CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP014032	Vibrio fluvialis strain AK 1296-A2-1 chromosome 2, complete sequence	0 crisprs	DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,csa3	0	0	2	0
CP014033	Vibrio fluvialis strain AK 1296-A2-1 chromosome 1, complete sequence	0 crisprs	csa3,DinG,cas3,csx1,DEDDh	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

224015 : 259449

Vibrio_phage(30.0%)

plate,integrase,terminase,tail,capsid,portal

attL 213423:213437|attR 253777:253791

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
213423:213437	attL	NA	NA	NA	NA
AVH33413.1\|224015_225044_-\|integrase	integrase	A0A160DJR8	Vibrio_phage	2.0e-118	59.8
AVH33414.1\|225332_227024_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AVH33415.1\|227016_229350_+	ATP-binding protein	NA	NA	NA	NA
AVH33416.1\|229339_230503_+	protein-PII uridylyltransferase	NA	NA	NA	NA
AVH33417.1\|230492_231236_+	hypothetical protein	NA	NA	NA	NA
AVH33418.1\|231237_231732_-	hypothetical protein	NA	NA	NA	NA
AVH33419.1\|231784_232492_-	Cro/Cl family transcriptional regulator	M4MB93	Vibrio_phage	2.0e-13	35.7
AVH33420.1\|232620_232803_+	Cro/Cl family transcriptional regulator	M4R204	Salicola_phage	9.4e-08	56.6
AVH33421.1\|232871_233030_+	regulator	U3PFJ1	Vibrio_phage	5.5e-12	70.0
AVH33422.1\|233247_233787_+	transcriptional regulator	A0A2I7RNI1	Vibrio_phage	2.0e-53	57.0
AVH33423.1\|233796_234129_+	hypothetical protein	NA	NA	NA	NA
AVH33424.1\|234201_234498_+	hypothetical protein	NA	NA	NA	NA
AVH33425.1\|234494_235037_+	DNA methyltransferase	U3PDF3	Vibrio_phage	4.4e-85	83.4
AVH33426.1\|235053_237684_+	replication protein	A0A166YHE2	Vibrio_phage	7.7e-300	59.5
AVH33427.1\|237693_237945_+	zinc-binding protein	NA	NA	NA	NA
AVH34706.1\|237969_238194_+	hypothetical protein	NA	NA	NA	NA
AVH33428.1\|238190_238553_+	hypothetical protein	A0A1S6KZW3	Salmonella_phage	1.8e-10	35.2
AVH33429.1\|238861_240052_+	hypothetical protein	NA	NA	NA	NA
AVH33430.1\|240048_240987_+\|tail	phage tail protein	NA	NA	NA	NA
AVH33431.1\|240979_241555_+\|plate	baseplate assembly protein	B5TK73	Pseudomonas_phage	1.2e-11	33.1
AVH33432.1\|241551_241938_+	hypothetical protein	NA	NA	NA	NA
AVH33433.1\|241934_242981_+	hypothetical protein	S5FM68	Shigella_phage	1.5e-12	24.2
AVH33434.1\|242962_243442_+	hypothetical protein	NA	NA	NA	NA
AVH33435.1\|243438_244533_+\|tail	phage tail protein	E5FJ29	Escherichia_phage	3.9e-16	37.4
AVH34707.1\|244637_245462_+	hypothetical protein	NA	NA	NA	NA
AVH33436.1\|245576_246578_+	hypothetical protein	NA	NA	NA	NA
AVH33437.1\|246574_246982_+	hypothetical protein	NA	NA	NA	NA
AVH33438.1\|247113_247530_+	lysozyme	A0A1Q1PW74	Pseudoalteromonas_phage	1.4e-27	51.5
AVH33439.1\|247540_247771_+	hypothetical protein	NA	NA	NA	NA
AVH33440.1\|247761_248013_+	hypothetical protein	A0A1D9C9R8	Salinivibrio_phage	9.0e-09	45.2
AVH33441.1\|248093_248792_-	hypothetical protein	NA	NA	NA	NA
AVH33442.1\|248890_249415_-	hypothetical protein	NA	NA	NA	NA
AVH33443.1\|249534_250002_-	hypothetical protein	NA	NA	NA	NA
AVH33444.1\|250468_251434_-\|portal	phage portal protein	A0A0M3LS06	Mannheimia_phage	6.3e-58	40.9
AVH33445.1\|251444_253169_-\|terminase	terminase	E5E3X0	Burkholderia_phage	7.1e-113	41.4
AVH33446.1\|253339_254152_+\|capsid	phage capsid protein	A0A2H4J928	uncultured_Caudovirales_phage	1.7e-19	37.3
253777:253791	attR	NA	NA	NA	NA
AVH33447.1\|254194_255232_+\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	8.2e-64	41.7
AVH33448.1\|255340_255790_+	hypothetical protein	NA	NA	NA	NA
AVH33449.1\|255789_256254_+	hypothetical protein	A0A1S5NPS3	Burkholderia_phage	5.0e-05	29.4
AVH33450.1\|256250_256790_+	virion morphogenesis protein	NA	NA	NA	NA
AVH33451.1\|256790_256973_+	DUF2635 domain-containing protein	NA	NA	NA	NA
AVH33452.1\|256969_258103_+\|tail	phage tail protein	C9DGP7	Escherichia_phage	1.5e-47	38.7
AVH33453.1\|258106_258472_+	hypothetical protein	NA	NA	NA	NA
AVH33454.1\|258482_259178_+	hypothetical protein	NA	NA	NA	NA
AVH33455.1\|259161_259449_+\|tail	phage tail assembly protein	E5FFG7	Burkholderia_phage	9.7e-07	40.4

DBSCAN-SWA_2

920066 : 941126

Burkholderia_phage(18.75%)

plate,terminase,tail,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH34017.1\|920066_920174_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
AVH34018.1\|920209_920497_-\|tail	phage tail assembly protein	E5FFG7	Burkholderia_phage	5.7e-07	41.6
AVH34019.1\|920480_921188_-	hypothetical protein	NA	NA	NA	NA
AVH34020.1\|921198_921564_-	hypothetical protein	NA	NA	NA	NA
AVH34021.1\|921567_922701_-\|tail	phage tail protein	C9DGP7	Escherichia_phage	1.5e-47	38.7
AVH34022.1\|922697_922880_-	DUF2635 domain-containing protein	A0A0C4UR31	Shigella_phage	7.5e-05	46.4
AVH34023.1\|922880_923420_-	virion morphogenesis protein	NA	NA	NA	NA
AVH34024.1\|923416_923881_-	hypothetical protein	A0A1S5NPS3	Burkholderia_phage	8.6e-05	29.8
AVH34025.1\|923880_924330_-	hypothetical protein	NA	NA	NA	NA
AVH34026.1\|924438_925476_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	3.7e-64	42.0
AVH34027.1\|925518_926337_-\|capsid	phage capsid protein	Q94MZ5	Haemophilus_virus	1.7e-16	32.4
AVH34028.1\|926507_928232_+\|terminase	terminase	E5E3X0	Burkholderia_phage	1.6e-112	41.4
AVH34029.1\|928242_929208_+\|portal	phage portal protein	A0A0M3LS06	Mannheimia_phage	6.3e-58	40.9
AVH34030.1\|929695_930532_+	hypothetical protein	NA	NA	NA	NA
AVH34031.1\|930668_931352_+	hypothetical protein	NA	NA	NA	NA
AVH34032.1\|931948_932566_-	DNA-binding protein	A0A0P0ZCS0	Stx2-converting_phage	1.6e-22	59.8
AVH34033.1\|933082_933442_+	hypothetical protein	NA	NA	NA	NA
AVH34034.1\|933590_934130_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AVH34035.1\|934164_934596_+	GFA family protein	NA	NA	NA	NA
AVH34036.1\|934740_935181_+	hypothetical protein	NA	NA	NA	NA
AVH34037.1\|935257_935509_-	hypothetical protein	A0A1D9C9R8	Salinivibrio_phage	3.4e-08	43.8
AVH34038.1\|935499_935730_-	hypothetical protein	NA	NA	NA	NA
AVH34039.1\|935740_936157_-	lysozyme	A0A1Q1PW74	Pseudoalteromonas_phage	2.9e-28	53.0
AVH34742.1\|936390_936966_+	acyltransferase	A0A1V0SJ47	Klosneuvirus	2.8e-05	43.4
AVH34040.1\|937049_937613_-	hypothetical protein	R9TMQ2	Vibrio_phage	1.5e-56	59.3
AVH34041.1\|937605_938616_-	hypothetical protein	R9TNR5	Vibrio_phage	1.4e-71	72.1
AVH34042.1\|938612_939143_-	hypothetical protein	NA	NA	NA	NA
AVH34043.1\|939124_940171_-	hypothetical protein	S5FM68	Shigella_phage	1.1e-12	24.2
AVH34044.1\|940167_940554_-	hypothetical protein	NA	NA	NA	NA
AVH34045.1\|940550_941126_-\|plate	baseplate assembly protein	B5TK73	Pseudomonas_phage	5.8e-11	30.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014033

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26454 : 38972

Vibrio_phage(91.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH33077.1\|26454_28185_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.5e-49	35.0
AVH30430.1\|28294_29539_+	divalent metal cation transporter	NA	NA	NA	NA
AVH30431.1\|29708_30077_-	hypothetical protein	Q858Q3	Vibrio_phage	5.9e-25	51.2
AVH30432.1\|30195_30402_+	hypothetical protein	G8IRU4	Vibrio_phage	6.2e-16	53.8
AVH33078.1\|30470_31661_+	replication protein	G8IRU5	Vibrio_phage	6.6e-166	69.1
AVH30433.1\|31653_31971_+	hypothetical protein	G8IRU6	Vibrio_phage	2.2e-36	70.2
AVH30434.1\|31980_32205_+	hypothetical protein	R9TMT7	Vibrio_phage	1.2e-20	68.9
AVH30435.1\|32239_32455_+	hypothetical protein	R9TRU5	Vibrio_phage	3.0e-13	64.6
AVH30436.1\|32886_34050_+	hypothetical protein	G8IRU9	Vibrio_phage	3.5e-23	46.8
AVH30437.1\|34058_34400_+	DUF2523 domain-containing protein	R9TRT6	Vibrio_phage	1.8e-44	75.2
AVH30438.1\|34405_35776_+	toxin	R9TQ09	Vibrio_phage	3.0e-207	77.5
AVH30439.1\|35855_36035_+	hypothetical protein	NA	NA	NA	NA
AVH30440.1\|36544_38020_+	hypothetical protein	A0A2I7RNF1	Vibrio_phage	2.0e-07	19.8
AVH30441.1\|38022_38586_+	hypothetical protein	NA	NA	NA	NA
AVH33079.1\|38609_38972_-	regulator	A0A1W6UG37	Vibrio_phage	2.3e-37	61.5

DBSCAN-SWA_2

848506 : 855554

Megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH31118.1\|848506_848938_-	nucleoside-diphosphate kinase	K7YW26	Megavirus	2.6e-19	39.8
AVH31119.1\|849007_850300_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	4.5e-35	40.7
AVH31120.1\|850476_850671_-	Fe-S assembly protein IscX	NA	NA	NA	NA
AVH33121.1\|850726_851065_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
AVH31121.1\|851078_852932_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.8e-112	40.8
AVH31122.1\|852953_853469_-	co-chaperone HscB	NA	NA	NA	NA
AVH31123.1\|853536_853860_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	5.5e-27	54.2
AVH31124.1\|853919_854303_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	9.1e-53	77.4
AVH31125.1\|854339_855554_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.4e-30	30.5

DBSCAN-SWA_3

1066841 : 1077947

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH31295.1\|1066841_1069424_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.5e-77	38.2
AVH31296.1\|1069611_1070070_-	recombination regulator RecX	NA	NA	NA	NA
AVH31297.1\|1070139_1071192_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.7e-112	60.7
AVH31298.1\|1071364_1071853_-	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	1.3e-24	44.5
AVH31299.1\|1071937_1074499_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	5.8e-34	23.4
AVH31300.1\|1074567_1075554_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.3e-34	34.5
AVH31301.1\|1075625_1076561_-	murein hydrolase activator NlpD	I3PV79	Clostridium_phage	6.6e-12	32.0
AVH31302.1\|1076560_1077187_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	53.3
AVH31303.1\|1077179_1077947_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.1e-68	52.8

DBSCAN-SWA_4

1084079 : 1092791

Vibrio_phage(33.33%)

transposase,integrase,tRNA

attL 1080822:1080835|attR 1095598:1095611

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1080822:1080835	attL	NA	NA	NA	NA
AVH31313.1\|1084079_1085099_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.2e-109	57.7
AVH31314.1\|1085330_1085546_+	30S ribosomal protein S21	NA	NA	NA	NA
AVH31315.1\|1085574_1086018_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	4.3e-22	46.5
AVH31316.1\|1086136_1087882_+	DNA primase	A0A1S5RG58	Helicobacter_phage	4.5e-46	31.7
AVH31317.1\|1087979_1089857_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	5.5e-34	30.6
AVH31318.1\|1090239_1091481_+\|integrase	integrase	A0A1V0E8G8	Vibrio_phage	9.1e-110	47.6
AVH31319.1\|1091658_1092791_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.2e-53	43.4
1095598:1095611	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2252079 : 2258610

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH32294.1\|2252079_2253213_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-64	42.0
AVH32295.1\|2253224_2254475_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.8e-97	48.2
AVH32296.1\|2254577_2255027_+	transcriptional regulator NrdR	NA	NA	NA	NA
AVH32297.1\|2255040_2256150_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.5e-43	35.0
AVH32298.1\|2256153_2256807_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.0e-35	39.0
AVH32299.1\|2256848_2257958_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.8e-62	39.0
AVH32300.1\|2258139_2258610_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.9e-31	47.3

DBSCAN-SWA_6

2321464 : 2330817

Vibrio_phage(33.33%)

capsid,integrase

attL 2318650:2318696|attR 2331889:2331935

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2318650:2318696	attL	NA	NA	NA	NA
AVH32349.1\|2321464_2322454_-\|integrase	integrase	Q83VS6	Escherichia_phage	2.3e-76	47.2
AVH33181.1\|2322450_2323173_-	peptidase	L7TH81	Pseudomonas_virus	4.2e-06	24.7
AVH32350.1\|2323279_2323531_+	hypothetical protein	NA	NA	NA	NA
AVH32351.1\|2323540_2323801_+	hypothetical protein	NA	NA	NA	NA
AVH32352.1\|2323810_2324050_+	hypothetical protein	A0A2I7RNH0	Vibrio_phage	1.2e-07	42.4
AVH32353.1\|2324075_2324360_+	hypothetical protein	A0A2I7RNG7	Vibrio_phage	4.3e-23	59.8
AVH32354.1\|2324522_2324714_+	hypothetical protein	NA	NA	NA	NA
AVH32355.1\|2324772_2325006_+	hypothetical protein	NA	NA	NA	NA
AVH33182.1\|2325110_2327003_+	replication protein	F1BUM9	Cronobacter_phage	1.4e-53	36.1
AVH32356.1\|2327041_2327233_+	zinc-binding protein	NA	NA	NA	NA
AVH32357.1\|2327418_2328228_+	hypothetical protein	NA	NA	NA	NA
AVH32358.1\|2328230_2328971_+	hypothetical protein	NA	NA	NA	NA
AVH32359.1\|2329362_2329530_+	hypothetical protein	NA	NA	NA	NA
AVH32360.1\|2329513_2329777_+	zinc-binding protein	NA	NA	NA	NA
AVH32361.1\|2329788_2330817_+\|capsid	major capsid protein	A0A0U4K5I9	Pseudomonas_phage	4.5e-46	34.7
2331889:2331935	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014032

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014033

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection