CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023272	Pseudomonas lurida strain MYb11 chromosome, complete genome	2 crisprs	DEDDh,DinG,csa3,cas3,WYL	1	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023272_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023272_1

869585-869683

Orphan

Consensus_repeat	Method
GTGGGAGCGGGCTTGCTCGCGAAGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023272_1

>merge|CP023272|1|869585-869683|CRISPRCasFinder
GTGGGAGCGGGCTTGCTCGCGAAGGCGCCCCGACAGCCGCCCGCTATCTAACTGTCACCCCGCGATCCAACTGTGGGAGCGGGCTTGCCCGCGAAGGCG

>CP023272|1|1|869585-869683|CRISPRCasFinder
GTGGGAGCGGGCTTGCTCGCGAAGGCG	CCCCGACAGCCGCCCGCTATCTAACTGTCACCCCGCGATCCAACT
GTGGGAGCGGGCTTGCCCGCGAAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP023272.1\|AVJ36505.1\|869012_869498_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
CP023272.1\|AVJ36506.1\|870203_870482_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP023272.1\|AVJ36507.1\|870735_872274_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
CP023272.1\|AVJ36510.1\|876170_876683_+\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
CP023272.1\|AVJ36502.1\|865644_866544_-\|acyltransferase	unknown	unknown	gnl\|CDD\|237584
CP023272.1\|AVJ36499.1\|862396_862618_-\|hypothetical-protein	unknown	unknown	unknown
CP023272.1\|AVJ36501.1\|863569_865468_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|180120
CP023272.1\|AVJ36513.1\|878187_878769_-\|general-secretion-pathway-protein-GspH	unknown	unknown	gnl\|CDD\|378793
CP023272.1\|AVJ36512.1\|877286_878234_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
CP023272.1\|AVJ36503.1\|866544_868644_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
CP023272.1\|AVJ36498.1\|861627_862386_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|182741
CP023272.1\|AVJ36509.1\|873346_876178_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
CP023272.1\|AVJ36508.1\|872375_873332_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	unknown	unknown	gnl\|CDD\|235536
CP023272.1\|AVJ36515.1\|879444_880152_+\|pilus-assembly-protein-PilW	unknown	unknown	gnl\|CDD\|227301
CP023272.1\|AVJ36500.1\|862642_863560_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
CP023272.1\|AVJ36504.1\|868723_869014_-\|pressure-regulated-protein	unknown	unknown	gnl\|CDD\|378808
CP023272.1\|AVJ36511.1\|876675_877128_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
CP023272.1\|AVJ36496.1\|858162_860259_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
CP023272.1\|AVJ36497.1\|860370_861525_-\|2-alkenal-reductase	unknown	unknown	gnl\|CDD\|273938
CP023272.1\|AVJ36514.1\|878962_879448_+\|type-IV-pilus-modification-protein-PilV	unknown	unknown	gnl\|CDD\|131575

Protein	Function_ID	Function_description	E-value
CP023272.1\|AVJ36505.1\|869012_869498_+\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.8057e-67
CP023272.1\|AVJ36506.1\|870203_870482_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	8.25686e-28
CP023272.1\|AVJ36507.1\|870735_872274_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	0
CP023272.1\|AVJ36510.1\|876170_876683_+\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	2.4754e-67
CP023272.1\|AVJ36502.1\|865644_866544_-\|acyltransferase	gnl\|CDD\|237584	PRK14014, PRK14014, putative acyltransferase; Provisional.	0
CP023272.1\|AVJ36500.1\|862642_863560_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP023272.1\|AVJ36514.1\|878962_879448_+\|type-IV-pilus-modification-protein-PilV	gnl\|CDD\|131575	TIGR02523, probable_type-4_fimbrial_biogenesis_protein, type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc. [Cell envelope, Surface structures, Protein fate, Protein modification and repair].	1.79175e-23
CP023272.1\|AVJ36513.1\|878187_878769_-\|general-secretion-pathway-protein-GspH	gnl\|CDD\|378793	pfam12019, GspH, Type II transport protein GspH. GspH is involved in bacterial type II export systems. Like all pilins, GspH has an N-terminus alpha helix. This helix is followed by nine beta strands forming two beta sheets, one of five antiparallel strands and one of four antiparallel strands. GspH is a minor pseudopilin; it is expressed much less than other pseudopilins in the type II secretion pilus (major pilins). The function and localization of minor pseudo-pilins are still to be fully unraveled. It has been suggested that some minor pseudopilins may assemble either into the base or the tip of pili, or both. They function as initiators or regulators of pilus biogenesis and dynamics, and/or as adaptors between various pseudopilin component and other members of the T2SS.	9.89323e-18
CP023272.1\|AVJ36512.1\|877286_878234_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
CP023272.1\|AVJ36503.1\|866544_868644_-\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
CP023272.1\|AVJ36498.1\|861627_862386_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|182741	PRK10799, PRK10799, type 2 GTP cyclohydrolase I.	1.94162e-114
CP023272.1\|AVJ36509.1\|873346_876178_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
CP023272.1\|AVJ36508.1\|872375_873332_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.89642e-162
CP023272.1\|AVJ36515.1\|879444_880152_+\|pilus-assembly-protein-PilW	gnl\|CDD\|227301	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion].	1.44266e-12
CP023272.1\|AVJ36501.1\|863569_865468_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|180120	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional.	0
CP023272.1\|AVJ36504.1\|868723_869014_-\|pressure-regulated-protein	gnl\|CDD\|378808	pfam12088, DUF3565, Protein of unknown function (DUF3565). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.	3.87937e-30
CP023272.1\|AVJ36511.1\|876675_877128_+\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.40185e-52
CP023272.1\|AVJ36496.1\|858162_860259_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.23121e-96
CP023272.1\|AVJ36497.1\|860370_861525_-\|2-alkenal-reductase	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.10809e-143

>CP023272.1|AVJ36505.1|869012_869498_+|peptidylprolyl-isomerase
MTIAANKAVSIDYTLTNDAGEVIDSSAGGAPLVYLQGAGNIIPGLEKALEGKSVGDELTVAVEPEDAYGEYSAELVSTLSRSMFEGVDELEVGMQFHASAPDGQMQIVTIRDLDGDDVTVDGNHPLAGQRLNFQVKIVAIRDASQEEVAHGHVHGEGGHHH
>CP023272.1|AVJ36504.1|868723_869014_-|pressure-regulated-protein
MGRDLLHKNEERTSLNKDLPESEHNPDGRDRSTASFIIGFHQDEDQHWVAELSCGHTQHLRHQPPWQSRAWVLDPAQRLEKIGQPFACGWCTQERE
>CP023272.1|AVJ36503.1|866544_868644_-|phosphate-acetyltransferase
MQTFFIAPTDFGVGLTSISLGLVRTLERAGLKVGFFKPIAQPHPGDTGPERSTELVARTHGLKPPQPLGLAHVERMLGDGQLDELLEEIITLYQQAAVGKDVLIVEGMVPTRSASYAARVNLHLAKSLDAEVILVSAPENEVLTELSGRVELQAQLFGGPKDPKVLGVILNKVRTDESMEAFAARLKEHSPLLRSGDFRLLGCIPYQPELNAPRTRDVADLMGAQILNAGDYETRRMTKIIICARTMRNTVELLKPGVLVVTPGDRDDIILAVSLAAINGVPLAGLLLTSDTLPDPRIMDLCRGAFQAGLPVLSVSTGSYDTANQLNSLNKEIPIDDRERAEIITDFVASHLDARWLHQRCGTPREMRLSPAVFRYQLIQRAQAANKRIVLPEGSEPLTVQAAAICQARGIARCVLLAKPADVEAVARAQGIELPEGLEILDPDLIRQRYVEPMVALRKSKSLNAPMAEQQLEDTVVIATMMLALDEVDGLVSGVIHSTANTIRPALQLIKTAPGCTLVSSVFFMLFPEQVLVYGDCVMNPHPSAAELAEIALQSADSAAAFGITPRVAMISYSSGESASGEEVEKVREATLLAHEQQSSLLIDGPLQYDAAANENVARQLAPNSQVAGKATVFVFPDLNTGNTTHKAVQRSADCVSLGPMLQGLRKPVNDLPRGAQVDDIVYTIALTAIQAANRPIDI
>CP023272.1|AVJ36502.1|865644_866544_-|acyltransferase
MLDFLPAALRGVIASLLLALNTILLCSFLFIVALFKALPFAKRFSEWLMNHTHEAWVTNNKGWMNLVRRTRWHLTGLEGLDYQHSYLVTSNHQSWVDIMVLQYVLNRRIRPLKFFLKQELIWVPVIGLAWWALGFPFMKRYTKAYLEKHPEKKGKDLETTRKTCAKFRDNPVGIFNFAEGTRFTPGKHAQQNSPFRYLLKPKAGGIAFVLDAMGEQLKSLVNVTIHYPGGRPGYWDLLCGKVKDVVVHFEEVQIPAEFIGKNYEQDGAYRLAFQGWINQLWEDKDALLDKLHTDFPDNK
>CP023272.1|AVJ36501.1|863569_865468_+|sulfate-adenylyltransferase-subunit-CysN
MSHQSDLISEDILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDIDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARYGVQTQTRRHSFIASLLGIKHIVVAVNKMDINGFDQSVFEQIKADYLKFADGIAFKPSTLAFVPMSALKGDNVVNKSERSPWYTGQSLMEILETVEIANDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEVVVLPSGKSSRVKSIVTFEGELEHAGPGQAVTLTMEDEIDISRGDLLVHADNVPQVTDAFDAMLVWMAEEPMLPGKKYDIKRATSYVPGSITSIVHRVDVNTLAEGPASSLQLNEIGRVKVSLDAAIALDGYDSNRTTGAFIVIDRLTNGTVAAGMIIAPPVSHGGAAQHGSLAHVATEERALRFGQQPATVLFSGLSGAGKSTLAYAVERKLFDMGRAVFVLDGQNLRHDLNKGLPQDRAGRTENWRRAAHVARQFNEAGLLTLAAFVAPDAEGREQAKALIGGDRLLTVYVQASPLVCAERDPQGLYAAGGDNIPGESFPYDVPLNADLVIDTQALSVEESVKQVLELLRQRGAI
>CP023272.1|AVJ36500.1|862642_863560_+|sulfate-adenylyltransferase-subunit-CysD
MVDKLTHLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYKFRDKMVEELGLDLITHVNPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAAEREVIEKNGTLIMIDDDRILEHLSDEDKARIVKKKVRFRTLGCYPLTGAVESEAETLTDIIQEMLLTRTSERQGRVIDHDGAGSMEDKKRQGYF
>CP023272.1|AVJ36499.1|862396_862618_-|hypothetical-protein
MDGQRAVFERGMLAQHLLLFRTRARSKRYMNMPRGLGVKHVHECELACLRCRQLGTSATPSWSRRRQASAHIG
>CP023272.1|AVJ36498.1|861627_862386_+|Nif3-like-dinuclear-metal-center-hexameric-protein
MAVPLTTLVEEADRYLGSAKIADYCPNGLQVEGRPQVMRIVSGVTASQALLDAAVEAQADLILVHHGYFWKGENPCVTGMKQRRLKTLLKHDISLLAYHLPLDLHPDVGNNVQLARQLDITVEGPLDPSNPKIVGLVGSLAEPLSPRDFARRVQEVMGREPLLIEGSEMIRRVGWCTGGGQGYIDQAIAAGVDLYLSGEASEQTFHSARENDVSFIAAGHHATERYGVQALGEYLARRFALEHLFIDCPNPI
>CP023272.1|AVJ36497.1|860370_861525_-|2-alkenal-reductase
MLKALRFFGWPLLAGVLIAMLIIQRFPELVGLPSLDVNLQQAPQSNAVVQGPVTYADAVTIAAPAVVNLYTTKVINKPAHPLFEDPQFRRYFGDNGPKQRRMESSLGSGVIMSPEGYILTNNHVTTGADQIVVALRDGRETLARVVGSDPETDLAVLKIDLKSLPSITLGRSDGLRVGDVALAIGNPFGVGQTVTMGIISATGRNQLGLNSYEDFIQTDAAINPGNSGGALVDANGNLTGINTAIFSKSGGSQGIGFAIPVKLAMEVMKSIIEHGQVIRGWLGIEVQPLTKELAESFGLTGRPGIVVAGIFRDGPAQKAGLQLGDVILSINGEPAGDGRKSMNQVARIKPTDKVAIQVMRNGKEIKLLAEIGLRPPPAPVKEEE
>CP023272.1|AVJ36496.1|858162_860259_-|TonB-dependent-siderophore-receptor
MPSRRTAPLAGLALALLLDPAFAEENTLELDTISVTTDAYESATSPVMGYRATRSASATKTDTALRDIPQSISVIPATVLKDLGSTNVERALEFAGGVSKQNNFGGLTLYEYSVRGFTTSEFYQDGFSANRGYPSTPDTANIERIEVLKGPAASLYGRGDPGGTVNIVTKKPQPEAFATLQTSAGRWDRYRTALDLNTPLDSDGNVLSRVNLAVEDNHSFRDHVQSKRVFVAPSFSWQLDPDTTLLVESEFVRHSSTFDRGIVDASGVSRSTFLGEPNDGDIDNHNNRIQATLEHHLNDAWKLRLASHYKQGSLWGDASENRALNANGHTLNRRYRERSTGWHDSITQLELRGLFDSGRWQHELLVGTEYEDYRKKERVTAIAGSPYAIDIYNPVYGQPKPNGERSGTDVFEQTKSHALNLQDQIIFTDRLRGMVGARFEHFDQSTDDFTRNHAKSRQTHDAFTQRAGLLYQLTPQVGVFANASTSFKPNSGLDAEGKSFKPEDGVGYEVGIKSELFDDRLSATLAAFHIEKENVLALDPATNTNRAMGKARSQGLDLQVSGQVSDAVRVIGAFAYIDAEVTKGDKTIPTGSRILGVAKRSGSLLGVYEFQDGALRGSDLGAAFTYVGDRSGEAGTGFELPAYHTVDLLAHYKATENVTVGLNLNNLFDERYYERSYSNYWITPGEPRNLTVSLTLNL
>CP023272.1|AVJ36506.1|870203_870482_-|30S-ribosomal-protein-S20
MANTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDTKDAEKAQAAYVLAVPVIDRMADKGIIHKNKAARHKSRLNGHIKALSVAAAA
>CP023272.1|AVJ36507.1|870735_872274_+|murein-biosynthesis-integral-membrane-protein-MurJ
MNLLKSLAAVSSITMISRVLGFVRDTLLARIFGASMATDAFFIAFKLPNLLRRIFAEGAFSQAFVPILAEYKTQQGEEATRTFIAYVSGLLTLVLMLVTVLGMLAAPWVIWATAPGFANTPEKFALTTDLLRVTFPYILLISLSSLAGAILNTWNRFSVPAFVPTLLNVSMIIFALFLTPYFDPPVMALGWAVLAGGLAQLLYQLPHLKKIGMLVLPRLNLKDTGVWRVMRNMLPAILGVSVSQISLIINTAFASLLVSGSVSWMYYADRLMELPSGVLGVALGTILLPTLARTYASKDRQEYSRILDWGLRLCFVLVLPCALALGILAEPLTVSLFQYGQFDAHDALMTQHALVAYSVGLLGIIVIKVLAPGFYAQQNIRTPVKIAIFTLIVTQLLNLVFIGPLAHAGLALAISAGACINAGLLFYQLRKQQMFQPQPGWGLFALKLLVAVGAMSAVLLGLMHFMPAWDEGHMLERFMRLGGLVVAGVVVYFGMLLLQGFRLRDFNRKSLS
>CP023272.1|AVJ36508.1|872375_873332_+|bifunctional-riboflavin-kinase/FMN-adenylyltransferase
MSKKRVMQLVRGLHNLRPEHRGCVATIGNFDGVHRGHQAILARLRERAVELGVPSCVVIFEPQPREYFTPETAPARLARLRDKLQLLAEEGVDRVLCLAFNQRLQSLSAAEFVDRILVDGLGVQHLEVGDDFRFGCDRVGDFDFVQQAGVNQGFTVEAAQTVELDGLRVSSTQVRNALAAADFALAERLLGRPFRIAGRVLHGQKLARQLGTPTANVQLKRRRVPLTGVYLVSVDIDGQSWPGVANIGVRPTVAGDGKAHLEVHLLDFAGDLYDRRLTVVFHQKLREEQRFASLEALKTAINADVAAARALAAPSAHR
>CP023272.1|AVJ36509.1|873346_876178_+|isoleucine--tRNA-ligase
MTDYKATLNLPDTAFPMKAGLPQREPQILQRWDSIGLYGKLREIGKDRPKFVLHDGPPYANGTIHIGHALNKILKDMILRSKTLSGFDAPYVPGWDCHGLPIEHKVEVTYGKNLGADKTRELCRTYATEQIEGQKSEFIRLGVLGEWDNPYKTMNFKNEAGEIRALAEIVKGGFVFKGLKPVNWCFDCGSALAEAEVEYEDKKSSTIDVAFPIADDAKLAEAFGLASLGKPAAIVIWTTTPWTIPANQALNVHPEFTYALVDVGDRLLVLAEEMVEACLARYELQGSVIATTTGSALELINFRHPFYDRLSPVYLADYVELGSGTGIVHCSPAYGVDDFVICKKYGLVNDDIINPVQSNGVYVPSLEFFGGQFIFKADQPIIEKLREVGALMQTATIQHSYMHCWRHKTPLIYRATAQWFIGMDKEPTSGDTLRVRSLKAIEDTQFVPAWGQARLHSMIANRPDWCISRQRNWGVPIPFFLNKESGELHPRTVELMEAVAQRVEQEGIEAWFKLDAAELLGDEAPQYDKISDTLDVWFDSGTTHWHVLRGSHPMGHETGPRADLYLEGSDQHRGWFHSSLLTGCAIDNHAPYRELLTHGFTVDETGRKMSKSLKNVIEPKKINETLGADIMRLWVASTDYSGEIAVSDQILQRSADAYRRIRNTARFLLSNLTGFNPATDLLAAEDMLALDRWAVDRTLLLQRELQEHYGEYRFWNVYSKIHNFCVQELGGFYLDIIKDRQYTTGANSKARRSAQTALYHICEALVRWIAPILAFTADELWAYLPGERNESVMLNTWYEGLTELPADFELGREYWEGVMAVKVAVNKELEVQRAAKAVGGNLQAEVTLFAEEGLTADLAKLSNELRFVLITSTASLAPFAQAPADAVATEVPGLKLKVVKSAFPKCARCWHCREDVGVNPEHPEICGRCVDNISGEGEVRHYA
>CP023272.1|AVJ36510.1|876170_876683_+|lipoprotein-signal-peptidase
MPNSASRFGRLGWLVLSLLVLVIDQVSKAHFEGSLEMFQQIVVIPDYFSWTLAYNTGAAFSFLADGGGWQRWLFAVIAVVVSAVLVVWLKRLGRDDTWLAIALALVLGGALGNLYDRIALGHVIDFILVHWQNRHYFPAFNFADSAITVGAIMLALDMFKSKKTGETVND
>CP023272.1|AVJ36511.1|876675_877128_+|peptidylprolyl-isomerase
MTDQVLAEQRIGQNTEVTLHFALRLENGDTVDSTFDKAPATFKVGDGNLLPGFEAALFGFKAGDKRTLQILPENAFGQPNPQNVQIIPRSQFQDMDLSEGLLVIFNDAANTELPGVVKTFDDTQVTIDFNHPLAGKTLTFDVEIIDVKAI
>CP023272.1|AVJ36512.1|877286_878234_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQIKLANPRGFCAGVDRAIEIVNRALEVFGPPIYVRHEVVHNKFVVEDLRARGAIFVEELDQVPDDVIVIFSAHGVSQAVRTEAAGRGLKVFDATCPLVTKVHIEVARYSRDGRECILIGHAGHPEVEGTMGQYDASNGGAIYLVEDEKDVANLQVHNPDRLAFVTQTTLSMDDTSRVIDALRTRFPAIGGPRKDDICYATQNRQDAVKQLADECDVVLVVGSPNSSNSNRLRELAERMATPAYLIDGAEDMQRSWFDGVERIGITAGASAPEVLVRGVIQQLHAWGATGADELAGREENITFSMPKELRVRSLL
>CP023272.1|AVJ36513.1|878187_878769_-|general-secretion-pathway-protein-GspH
MKQRGFTLIELLLGLIVSGLLASLAVPSFTSLLGSQQRLGAAQSLAQGLRYARAEAIARNRAVVIHALGDDWSLGWRVIVDISGRGHPDDDNPVLLEHQDSGRAPIVGNGPLKSQVRFSGLGEPIFAGGGFRAGTVHVCAPDQAQSLHQIVLAPSGRISLRSDSAEQALCRGRPGTRALTAVSEPAVPWAWRK
>CP023272.1|AVJ36514.1|878962_879448_+|type-IV-pilus-modification-protein-PilV
MLACTNTCSPYTPNRHQAGMTLIEVLVATLILAIGLLGAAMIQLNALKYTDSSRMTSQASFIAYDMLDRIRANAGADYAWGQAERAAPNRATANVRDLDLHDFEANILGFAGESATGSVSISGGEVTVSISWDDSRGANTSGARETFTLTSRIVDEQEVAQ
>CP023272.1|AVJ36515.1|879444_880152_+|pilus-assembly-protein-PilW
MKCHAQGFSLVELLLALALGILLVLGGSQLVINSRITHASQQAAMLLQEDARFVLGKMIQDIRQAGMVGCLATGAIDNAPLAFDRPVSWSVGSGTRSLTLVTTDVGEGSGKPDWTVLSDCTGTAQAYPGNAPAPAPGQIRFAVRQLTYTFEAGQLKVSTPASPAKAVLVDNVKAFDISFGVAANPGSLNVVRYDAAPVDTSLIRSVRILMTLQDPSGRVKNQTYSVVAALRNRLG

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Crispr_ID: CP023272_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023272_2

4496317-4496429

Orphan

Consensus_repeat	Method
GTGAACCCATTCAAGTGTGGGAGCTGGCTTGCCTGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023272_2

>merge|CP023272|2|4496317-4496429|CRISPRCasFinder
GTGAACCCATTCAAGTGTGGGAGCTGGCTTGCCTGCGATGAGGCCATCAGCCCTGCCAAGGCCCCTACTTGATGTGTGAACCCGTTCAAGTGTGGGAGCTGGCTTGCCTGCGA

>CP023272|2|2|4496317-4496429|CRISPRCasFinder
GTGAACCCATTCAAGTGTGGGAGCTGGCTTGCCTGCGA	TGAGGCCATCAGCCCTGCCAAGGCCCCTACTTGATGT
GTGAACCCGTTCAAGTGTGGGAGCTGGCTTGCCTGCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP023272.1\|AVJ39567.1\|4499976_4500705_+\|Asp/Glu/hydantoin-racemase	unknown	unknown	gnl\|CDD\|226611
CP023272.1\|AVJ39568.1\|4500716_4501643_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP023272.1\|AVJ39566.1\|4498433_4499963_+\|nitrate-reductase	unknown	unknown	gnl\|CDD\|271404
CP023272.1\|AVJ39559.1\|4490692_4491415_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP023272.1\|AVJ39563.1\|4494830_4496174_+\|aminodeoxychorismate-synthase,-component-I	unknown	unknown	gnl\|CDD\|223225
CP023272.1\|AVJ39570.1\|4502648_4503338_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|178407
CP023272.1\|AVJ39555.1\|4484631_4485822_-\|2-methylaconitate-cis-trans-isomerase-PrpF	unknown	unknown	gnl\|CDD\|131387
CP023272.1\|AVJ39565.1\|4497224_4497959_+\|phosphoadenylyl-sulfate-reductase	unknown	unknown	gnl\|CDD\|215175
CP023272.1\|AVJ39562.1\|4493759_4494746_+\|alpha-L-glutamate-ligase-like-protein	unknown	unknown	gnl\|CDD\|274070
CP023272.1\|AVJ39569.1\|4501769_4502516_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|235500
CP023272.1\|AVJ39560.1\|4491685_4492222_+\|ATP-dependent-zinc-protease	unknown	unknown	gnl\|CDD\|226553
CP023272.1\|AVJ39561.1\|4492227_4493760_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379600
CP023272.1\|AVJ39564.1\|4496454_4497072_-\|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH	unknown	unknown	gnl\|CDD\|237437
CP023272.1\|AVJ39571.1\|4503445_4503829_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378502
CP023272.1\|AVJ39556.1\|4485831_4488426_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	unknown	unknown	gnl\|CDD\|131386
CP023272.1\|AVJ39557.1\|4488632_4489760_-\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
CP023272.1\|AVJ39572.1\|4503788_4504757_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187540
CP023272.1\|AVJ39554.1\|4482935_4484420_-\|2-methylcitrate-dehydratase	unknown	unknown	gnl\|CDD\|181845
CP023272.1\|AVJ39558.1\|4489802_4490696_-\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|183086
CP023272.1\|AVJ39573.1\|4504850_4505735_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
CP023272.1\|AVJ39567.1\|4499976_4500705_+\|Asp/Glu/hydantoin-racemase	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	8.08558e-59
CP023272.1\|AVJ39568.1\|4500716_4501643_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.02604e-64
CP023272.1\|AVJ39566.1\|4498433_4499963_+\|nitrate-reductase	gnl\|CDD\|271404	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
CP023272.1\|AVJ39559.1\|4490692_4491415_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.17024e-50
CP023272.1\|AVJ39563.1\|4494830_4496174_+\|aminodeoxychorismate-synthase,-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.4494e-169
CP023272.1\|AVJ39570.1\|4502648_4503338_-\|HAD-family-hydrolase	gnl\|CDD\|178407	PLN02811, PLN02811, hydrolase.	2.05407e-78
CP023272.1\|AVJ39555.1\|4484631_4485822_-\|2-methylaconitate-cis-trans-isomerase-PrpF	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
CP023272.1\|AVJ39565.1\|4497224_4497959_+\|phosphoadenylyl-sulfate-reductase	gnl\|CDD\|215175	PLN02309, PLN02309, 5'-adenylylsulfate reductase.	5.02965e-117
CP023272.1\|AVJ39562.1\|4493759_4494746_+\|alpha-L-glutamate-ligase-like-protein	gnl\|CDD\|274070	TIGR02291, conserved_protein_of_unknown_function, alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.	0
CP023272.1\|AVJ39569.1\|4501769_4502516_+\|oxidoreductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	5.51886e-108
CP023272.1\|AVJ39560.1\|4491685_4492222_+\|ATP-dependent-zinc-protease	gnl\|CDD\|226553	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones].	2.27326e-57
CP023272.1\|AVJ39561.1\|4492227_4493760_+\|hypothetical-protein	gnl\|CDD\|379600	pfam14402, 7TM_transglut, 7 transmembrane helices usually fused to an inactive transglutaminase. A family of seven transmembrane helices fused to an inactive transglutaminase domain. The transglutaminase domain is predicted to be extracellularly located. Members of this family are associated in gene neighborhoods with a pepsin-like peptidase and an ATP-grasp of the RimK-family. The ATP-grasp is predicted to modify the 7TM protein or a cofactor that interacts with it.	3.34786e-122
CP023272.1\|AVJ39564.1\|4496454_4497072_-\|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH	gnl\|CDD\|237437	PRK13582, thrH, bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH.	2.32135e-147
CP023272.1\|AVJ39571.1\|4503445_4503829_+\|hypothetical-protein	gnl\|CDD\|378502	pfam10861, DUF2784, Protein of Unknown function (DUF2784). This is a family of uncharacterized protein. The function is not known however it is conserved in Bacteria.	3.3891e-38
CP023272.1\|AVJ39556.1\|4485831_4488426_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	gnl\|CDD\|131386	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) ().	0
CP023272.1\|AVJ39557.1\|4488632_4489760_-\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
CP023272.1\|AVJ39572.1\|4503788_4504757_-\|hypothetical-protein	gnl\|CDD\|187540	cd05229, SDR_a3, atypical (a) SDRs, subgroup 3. These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.26438e-111
CP023272.1\|AVJ39554.1\|4482935_4484420_-\|2-methylcitrate-dehydratase	gnl\|CDD\|181845	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase.	0
CP023272.1\|AVJ39558.1\|4489802_4490696_-\|methylisocitrate-lyase	gnl\|CDD\|183086	PRK11320, prpB, 2-methylisocitrate lyase; Provisional.	0
CP023272.1\|AVJ39573.1\|4504850_4505735_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.81005e-35

>CP023272.1|AVJ39563.1|4494830_4496174_+|aminodeoxychorismate-synthase,-component-I
MPTCSVHPLPYRANPAEYFAVIRHAPGAVLLDSGRPAAERGRYDLLSAWPQTTLTVSPDESGSDFLQRLRENLAQLGDADLPDGYALPFAGGLIGYLSYDFGRHLEQMPHLAADDLHLPDARFGLYAWALISDHQAQASQLVFHPALADSERQRLIALFRHPVAGSTARFKLQGPMASDLTAERYRQAIVRIQDYIQAGDCYQVNFAQRFRAPCLGDPWVAYCALREACPTPFSGFQSLPDDGAVLSLSPERFVRISERHVETRPIKGTRPRGLTPEEDAAHAAELLASPKDRAENLMIVDLLRNDLGRTCRTGSVSVPELFSLESYPNVHHLVSSVTGTLADDKDALDLIAGSFPGGSITGAPKIRAMQIIDELEPTRRGLYCGSLVYLDVRGEMDSSIAIRSLLVKDGQVCCWGGGGIVADSQWEAEYQESLTKVKVLLHTLESL
>CP023272.1|AVJ39562.1|4493759_4494746_+|alpha-L-glutamate-ligase-like-protein
MFGFWKTWKALEARGIMGINRRNADYVLKYNKRSLYPIVDDKIITKERALAAGIHVPEMYGVISTEKEIDKLDDIIGGRSDFVIKPAQGAGGDGILVVADRFEGRYRTVSGKIISHEEIEHQISSILTGLYSLGGHRDRALIEYRVVPDQIFKSISYEGVPDIRIIVLMGYPVMAMLRLPTRQSGGKANLHQGAIGVGVDLATGLTLRGTWLNNIITKHPDTTNAVDGVQLPNWDGFMKLAAGCYELCGLGYIGVDMVLDQEKGPLILELNARPGLNIQIANDCGLTLRTHAVEARLEALKAAGVTETPEERVKFVQEMFGHIPPVEG
>CP023272.1|AVJ39561.1|4492227_4493760_+|hypothetical-protein
MRSLTLHLKILIAILVVLGISVTAYQIFVLGIPVTEDATDDLWNIDAKVEFVANPKDPVKIQMFVPPLSRDFVSLNESFISNNYGVSVNRTDGNRKVTWSARRAKGNQTLYYRLVLTKRYSGEKVKVKGPTFRDSIAVEGPEKIAAEALLAPIRQHSADVETFISEAIKRTNNLNDDNVKLLLAGDPSTPHKAKIVELLLSIAHVPVEKVHTIRLVADQPQTPELWLRSFNGNDWLYFNPETGEQGLPADRLLWWTGDENLITVDGGKKAMVTFSLNNSEMNAIRLAKLTDENTDANFLEYSLYGLPLQTQQTFMIMVMIPIGVLVILILRNLIGLQTLGTFTPVLIALAFRETQLGFGIALFTIITALGLSLRSYLEHLKLQMLPRLSVVLTFVVVLIAAISLFSHKLGLERGLSVALFPMVILTMTIERLSITWEERGANHALKVAIGTLFAASLAHLIMSVPELIYFVFTFPAILLILVGFMLAMGRYRGYRLTELVRFKAFLKADS
>CP023272.1|AVJ39560.1|4491685_4492222_+|ATP-dependent-zinc-protease
MRLKPFLLLICLLAAPGLGVAAEKTVYGLNEYAQLAGIDLEVAAKLDTGAKTASLSARDIKRFKRDGESWVRFYLAIDTAHSHPIERPLARVSKIKRRAGDYDPDEDKNYTARPVIALDICMGTALRSIEVNLTDRSAFQYPLLIGSEALKRFDALVDPSLKYAAGKPACAADAHTAE
>CP023272.1|AVJ39559.1|4490692_4491415_-|GntR-family-transcriptional-regulator
MLDQLESTAVAQDDSQTMSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLLVRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMTDAEIEELRQVLHTHERDEAFQAGLGYYQQEGDFDFHYRIIQGAGNRTLTQMLCGELYQLVRMYRIQFSATPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASKRNIARHFPDGAPQTTTQRGES
>CP023272.1|AVJ39558.1|4489802_4490696_-|methylisocitrate-lyase
MSSNNKSTPGQRFRDAVASEHPLQVVGAINANHALLAKRAGFKAIYLSGGGVAAGSLGVPDLGITGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAIHIEDQVGAKRCGHRPNKEIVSQQEMVDRIKAAVDARTDDSFVIMARTDALAVEGLESALDRAAACIEAGADMVFPEAITELEMYKLFASKVKAPILANITEFGATPLYTTEQLKSADVSIVLYPLSAFRAMNKAAENVYTAIRRDGTQQNVIDTMQTRMELYDRIDYHTFEQKLDALFAAKK
>CP023272.1|AVJ39557.1|4488632_4489760_-|2-methylcitrate-synthase
MAEAKVLSGAGLRGQVAGQTALSTVGQAGAGLTYRGYDVRELAADAQFEEVAYLLLYGELPTQAELAAYSAKLSKLRDLPQALKEVLERIPADAHPMDVMRTGCSFLGNIEPEKDFSVQRDVTDRLLAAFPAIMCYWYRFSHDGKRIDCVTDEPTIGGHFLHLLHGKQPSELHVKVMNVSLILYAEHEFNASTFTARVCASTLSDLYSCVTAAIGSLRGPLHGGANEAAMEMIERFGSAEEAVEGTLGMLARKDKIMGFGHAIYKDNDPRNEVIKGWSKKLADEVGDKVLFPVSEAIDKTMWQQKKLFPNADFYHASAYHFMGIPTKLFTPIFVCSRLTGWAAHVFEQRANNRIIRPSAEYTGVEQRKFVPIERR
>CP023272.1|AVJ39556.1|4485831_4488426_-|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD
MNTEFRKPLPGSRLDYFDARAAIEAITPGAYATLPYTSRVLAENLVRRCDPATLNASLGQLIDRKRDLDFPWFPARVVCHDILGQTALVDLAGLRDAIALQGGDPAQVNPVVPTQLIVDHSLAVEAGGFDPDAFEKNRAIEDRRNEDRFHFIEWTKKAFKNVDVIPPGNGIMHQINLEKMSPVIQVRDGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAESVMLGRASWMRLPESVGVELTGKLQPGITATDMVLALTEFLRQQKVVGAWLEFFGEGASALTLGDRATISNMAPEYGATAAMFYIDSQTIAYLKLTGREDEQVTLVEQYARHTGLWADDLKGARYERGLTFDLSSVVRNMAGPSNPHARVATSDLASKGICGQWDEVPGQIPDGAVIIAAITSCTNTSNPRNVIAAGLLARNANKLGLTRKPWVKSSLAPGSKTVAMYLEEAGLGHELEKLGFGVVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGLDTDGKEIRLQDIWPSDEEIDAVVKACVKPEQFRAVYIPMFAIHEDTGPKVAPLYDWRPQSTYIRRPPYWEGALAGARPLKGMRPLAVLPDNITTDHLSPSNAIMLDSAAGEYLAKMGLPEVDFNSYATHRGDHLTAQRATFANPKLFNEMVVENGKVKQGSLARIEPEGQVTRMWEAIETYMERKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIAAEGFERIHRTNLVGMGVLPLEFLPGTDRHTLQIDGSETYDVVGARTPRAQLTLVINRKNGERVEVPVTCRLDTAEEVSIYEAGGVLQRFAQDFLESAATA
>CP023272.1|AVJ39555.1|4484631_4485822_-|2-methylaconitate-cis-trans-isomerase-PrpF
MAHAAQIKIPATYMRGGTSKGVFFSLKDLPASAQVPGAARDALLLRVIGSPDPYDKQIDGMGGATSSTSKTVILAKSTRADHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGSFAISAGLVDPARVPHNGVAVVRVWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQLEFMDPAAEEEGGGGSMFPTGNLVDDLEVPGVGTFKATLINAGIPTIFINAQDLGYTGTELQGAINSDPKALAMFETVRAYGALRMGLIKHLDEAAQRQHTPKVAFVAKPADYVASSGKAIKAGDVDLLVRALSMGKLHHAMMGTAAVAIGTAAAISGTLVNLAAGGVERNAVRFGHPSGTLRVGAEATQVNGEWVVKKAIMSRSARVLMEGFVRVPGDAF
>CP023272.1|AVJ39554.1|4482935_4484420_-|2-methylcitrate-dehydratase
MSANVDQNNRPDYDRVLQDIADYVLTYRIDSQAALDTARHCLMDTLGCGLLALRFPECTKHLGPIVEGTVVPFGARVPGTSFRLDPVKAAWDIGCIVRWLDYNDTWLAAEWGHPSDNLGGILAVADHLSQQRVANGDTPLTVRAVLEAMIMAHEIQGVIALENSFNRVGLDHVLLVKVASTAVTAKLMGANREQLLAALSHAFVDGQALRTYRHAPNAGSRKSWAAGDASSRGVRLADIALRGEMGIPGVLSAPQWGFYDVLFSHTNKDLALKPEDKRAFSLSQPYGTYVMENVLFKISFPAEFHAQTACEAAVTLHPRVKNRLHEIERIVITTHESAIRIISKVGQLANAADRDHCLQYMTAVPLAFGNLVAEQYEDEFHAAHPIIDELRDKMVIVEDPRYSREYLEADKRSIANAVQVFFKDGSSTEQVAVEYPIGHRRRRVDGIPLLEDKFKANLATRFTAQRSAEILALCKDQAKLEDTPVNRFMDLFVI
>CP023272.1|AVJ39564.1|4496454_4497072_-|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH
MEIACLDLEGVLVPEIWIAFAEKTGIESLRATTRDIPDYDVLMKQRLRILDEHGLKLADIQEVIATLKPLDGAIEFVNWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHRLITDETDRVVSYQLRQKDPKRQSVLAFKSLYYRVIAAGDSYNDTTMLGEADRGILFHAPENVIREFPQFPAVHTFEDLKQAFIKASNRSLSL
>CP023272.1|AVJ39565.1|4497224_4497959_+|phosphoadenylyl-sulfate-reductase
MNQAFDVAELAATYANKSAQDILKLAFSQFGDDLWISFSGAEDVVLVDMAWKLNKNVKVFSLDTGRLHPETYRFIEQVRDFYKIDIELISPDQSKLEPFVKEKGLFSFYKDGHGECCGVRKIEPLRRKLAGVTAWATGQRRDQSPGTRSQVAALEVDTAFSTPERTLYKFNPLAQMTSEEIWGYIRMLELPYNSLHERGFISIGCEPCTRPVLPNQHEREGRWWWEEATQKECGLHAGNIISKA
>CP023272.1|AVJ39566.1|4498433_4499963_+|nitrate-reductase
MRPSLSNNLALDLPSSSLNPEAASPGPLVLSPRLHNKDLAPTKVEGRRWGRYSIFALWTNDVHNIANYSFAIGLYALGLGGWQILLSLGIGAALVYFFMNLSGYMGQKTGVPFPVISRISFGIHGAQIPALIRAVIAIAWFGIQTYLASVVFRVLLTAIHPGFAEYDHNSILGLSSLGWVCFVAIWLVQLVILAYGMEMVRRYEGFAGPVILLTVASLAGWMYFQAGGNIAWSIREPLSGGEMWRNIFAGGALWLAIYGTLILNFCDFARSSPCRKTIQVGNFWGLPVNILVFAAITVLLCGGQFQLNGRVIESPTEIIAAIPNTFFLVLGCLAFLIVTVAVNIMANFVAPAFVLSNLAPRYLNFRRAGLISATVAVLILPWNLYNSPLVIVYFLSGLGALLGPLYGVIMVDYWLIRKSQVDVPHLYSEDPNGIYYYSRGVNLRAVAAFIPAAVIAILLALLPGFASVSPFSWLFGAGIAGLLYLLIAKRQPFYADVSGESIAVDNVSH
>CP023272.1|AVJ39567.1|4499976_4500705_+|Asp/Glu/hydantoin-racemase
MRILVVNVNTTESITETIAQQARAVAAPGTEIVGLTPYFGAESVEGNFESYLAAIAVMDRVMAYDQPFDAVIQAGYGEHGREGLQELLDVPVVDITEAAASTAMFLGHAYSVVTTLDRTVPLIEDRLKLAGLYQRCASVRASGMAVLELEENPLAAMEAIVRQAELAISEDKAEVICLGCGGMAGLDEQIRQRTGVPVVDGVTAAVTIAESLVRLGLSTSKVRTYATPRPKKVMGWPGKFGR
>CP023272.1|AVJ39568.1|4500716_4501643_-|LysR-family-transcriptional-regulator
MESFGSIECFVRSAEGGSFAEAARHMSLTPAAVGKSVAKLEARLGVRLFQRSTRRLTLTEAGKLFLEEVSGSLTTIQNAVANLASAEGRPVGTLKVSMGTVFGNRYVVPLLGAFMRRFPDISPDWHFDNRQVDLIGQGFDAAIGGGFELPQGVVARKLTPAHRVLVASADYLAQRPPVRGPDDLSRCRGILIRSPQTGRIRSWQLTSLEREQRPLVLKPSMTMSDSEAACCASAQGLGIALVSMPMAVPFLDSGAVVRVLPDWYVDDGNISLYYAEHKLLPGKTRAFVDFIIEQFAEQHLAARFNATL
>CP023272.1|AVJ39569.1|4501769_4502516_+|oxidoreductase
MTTHTLSGKVALIQGGSRGIGAAIVKRLAAQGAAVAFTYVSSAAKAEALQNSVISEGGKALAIHADSANADAIRNAVNATVEAFGRLDILINNAGVLAIAPLEDFKLEDFDQTLAINVRSVFIATQEAAKHMGDGGRVINIGSTNAERMPFGGGGPYAMSKAALVGLTKGLARDLGPRGITINNVQPGPVDTDMNPANSDFADTLIGLMAVGRYGHVEEIASFVAYLAGPEAGYITGASLTIDGGFSA
>CP023272.1|AVJ39570.1|4502648_4503338_-|HAD-family-hydrolase
MNAPRTAVGPIKAVIFDMDGLLLDTEGIYTEVTQIIAERYGRTYDWGIKQHIIGRGAQDLADYVVKALDLPITPAQFLEIREPLMSERFPKALGMPGAEALVRHLKAHNIPIAVGTSSSRNSFGHKTTLHREWFGLFDTIVTADDPEVGAAKPAPDIFLTAARRLGVAPEDCLVFEDSPFGVTAAKAAHMTAIAVPDEAMADSKYHHADQIIRKLADFDLAAYGLPPRP
>CP023272.1|AVJ39571.1|4503445_4503829_+|hypothetical-protein
MLLRIAADSLVLFHLTFILFVLFGGLLALKWRRVMWLHLPAAAWGVAVEVLHLPCPLTQWENLLRHLAGQDGYGGGFVEHYILTLIYPAGLTPGIQLALGALVLLVNIAVYVCLIRRAQAGSQGRPM
>CP023272.1|AVJ39572.1|4503788_4504757_-|hypothetical-protein
MKKVLVLGATGGIGGEVARQLSAAGWEVCALTRDVDKARSQNAVFTWIKGDALNRDEVLAAARGCAVIVHGVNPPGYRNWAEQVLPMIDNTIAAAIVEGATVVLPGTVYNYGPDAFPVLHEDSPQHPQTRKGAIRVQLEQRLLDASRQGARALIVRAGDFFGARVANNWFAQGLVKPGKPVKVVSYPGVPGVMHQWAYLPDVARTMVELIEHRATLDAFACFHMAGHVDTDGTQMVQAIQRVMLRRTGHQPRVNRFPWWLLKVAAPFVVTLREMQEMRYLWQTPLRMDNQRLLAALGHEPHTPLEAAVEATLADLGCLPAHA
>CP023272.1|AVJ39573.1|4504850_4505735_+|LysR-family-transcriptional-regulator
MASTIGWELYRSFLGVLREGSLSGAARQLGITQPTVGRHIAALETALGVVLFTRSPNGLLPTAVARTLRAHAETMERTAAALERAASAQGDEVRGVVRVSASEVVGVEVLPPILTQLRQAHPHLKVELVLTNRLSDLLQLEADIAVRMVRPSQEQLLARRIGLIEVGLHARDDYLQRHGTPLHMQDLASHSLIGFDQENAFIRSLAIKGFERSAFACSSDSDLAQLALIRAGAGIGGCQVQLAKRDPRLRRVLPEGFALMLDTWVTMHEDLRNSPRCRVMFDALVEGLQRYVQD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP023272_1	1.1\|869612\|45\|CP023272\|CRISPRCasFinder	869612-869656	45	CP023272.1	1360308-1360352	0	1.0
CP023272_1	1.1\|869612\|45\|CP023272\|CRISPRCasFinder	869612-869656	45	CP023272.1	1360236-1360280	1	0.978

1. spacer 1.1|869612|45|CP023272|CRISPRCasFinder matches to position: 1360308-1360352, mismatch: 0, identity: 1.0

ccccgacagccgcccgctatctaactgtcaccccgcgatccaact	CRISPR spacer
ccccgacagccgcccgctatctaactgtcaccccgcgatccaact	Protospacer
*********************************************

2. spacer 1.1|869612|45|CP023272|CRISPRCasFinder matches to position: 1360236-1360280, mismatch: 1, identity: 0.978

ccccgacagccgcccgctatctaactgtcaccccgcgatccaact	CRISPR spacer
ccccgacagccgcccgctatctacctgtcaccccgcgatccaact	Protospacer
*********************** *********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

200171 : 208577

Pseudomonas_phage(88.89%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ35946.1\|200171_200579_+	hypothetical protein	A0A0S2SYH9	Pseudomonas_phage	1.8e-22	45.2
AVJ35947.1\|200827_201619_-	hypothetical protein	NA	NA	NA	NA
AVJ35948.1\|201821_202244_-	hypothetical protein	A0A1B0VMK5	Pseudomonas_phage	2.6e-61	86.4
AVJ35949.1\|202292_202895_-\|tail	phage tail protein	A0A1B0VMK7	Pseudomonas_phage	3.1e-87	83.0
AVJ35950.1\|202907_203288_-	hypothetical protein	A0A1B0VML3	Pseudomonas_phage	1.1e-45	67.5
AVJ35951.1\|203394_204003_-	hypothetical protein	A0A1B0VMK2	Pseudomonas_phage	7.1e-100	90.6
AVJ35952.1\|203999_204308_-	hypothetical protein	A0A1B0VML7	Pseudomonas_phage	9.0e-43	81.4
AVJ35953.1\|206248_206557_-	hypothetical protein	A0A1B0VMJ4	Pseudomonas_phage	9.0e-43	91.4
AVJ35954.1\|206657_207167_-	hypothetical protein	NA	NA	NA	NA
AVJ35955.1\|207163_207427_-	hypothetical protein	A0A1B0VMJ2	Pseudomonas_phage	2.7e-24	72.3
AVJ35956.1\|207902_208577_-	DNA-binding protein	H6WRU3	Salmonella_phage	3.3e-29	37.9

DBSCAN-SWA_2

1267887 : 1305194

uncultured_Caudovirales_phage(35.0%)

holin,plate,tail,tRNA,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ36850.1\|1267887_1268358_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
AVJ36851.1\|1268491_1269601_-	iron ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.4e-21	37.7
AVJ36852.1\|1269597_1270518_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	1.0e-17	27.3
AVJ36853.1\|1270952_1273061_+	dehydrogenase	NA	NA	NA	NA
AVJ36854.1\|1273138_1273477_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA
AVJ36855.1\|1273579_1274050_-	bacterioferritin	NA	NA	NA	NA
AVJ36856.1\|1274251_1274470_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
AVJ36857.1\|1274714_1275317_+	peroxiredoxin	NA	NA	NA	NA
AVJ36858.1\|1275381_1276053_-	ribonuclease T	NA	NA	NA	NA
AVJ36859.1\|1276049_1277096_-	dihydroorotase	NA	NA	NA	NA
AVJ36860.1\|1277252_1278161_+	hypothetical protein	NA	NA	NA	NA
AVJ36861.1\|1278303_1279521_+	argininosuccinate synthase	NA	NA	NA	NA
AVJ36862.1\|1280142_1280775_+	DNA-binding response regulator	NA	NA	NA	NA
AVJ36863.1\|1280859_1281042_-	hypothetical protein	NA	NA	NA	NA
AVJ36864.1\|1281149_1281788_-	endonuclease III	NA	NA	NA	NA
AVJ36865.1\|1281939_1283103_-	electron transport complex subunit RsxB	NA	NA	NA	NA
AVJ36866.1\|1283240_1285292_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
AVJ36867.1\|1285464_1286559_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
AVJ36868.1\|1287053_1287377_-	ferredoxin family protein	NA	NA	NA	NA
AVJ36869.1\|1287520_1290112_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.6e-28	23.7
AVJ36870.1\|1290310_1291045_+	XRE family transcriptional regulator	B5TK58	Pseudomonas_phage	2.4e-118	87.3
AVJ36871.1\|1291638_1291983_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	2.6e-46	81.9
AVJ36872.1\|1292004_1292520_+	hypothetical protein	NA	NA	NA	NA
AVJ36873.1\|1292523_1293135_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.2e-43	53.3
AVJ36874.1\|1293144_1293477_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	7.4e-35	66.4
AVJ36875.1\|1293473_1294469_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	7.3e-110	62.9
AVJ36876.1\|1294465_1295095_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.7e-43	52.2
AVJ36877.1\|1296583_1296964_+	hypothetical protein	B5TK82	Pseudomonas_phage	7.2e-18	38.8
AVJ36878.1\|1297231_1298398_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	3.6e-124	57.2
AVJ36879.1\|1298397_1298904_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	1.1e-21	34.5
AVJ36880.1\|1298955_1299528_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.8e-28	39.8
AVJ36881.1\|1299656_1300793_+	hypothetical protein	NA	NA	NA	NA
AVJ36882.1\|1300792_1301176_+	hypothetical protein	B0ZSH2	Halomonas_phage	1.0e-35	58.3
AVJ36883.1\|1301168_1301381_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	9.0e-18	61.4
AVJ36884.1\|1301390_1302401_+\|tail	phage tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	2.2e-93	52.9
AVJ36885.1\|1302422_1302980_+	lysozyme	B5TK83	Pseudomonas_phage	4.7e-74	72.1
AVJ41028.1\|1302967_1303468_+\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.4e-29	51.3
AVJ36886.1\|1303550_1304051_+	CinA family protein	B5TK85	Pseudomonas_phage	1.7e-70	83.1
AVJ36887.1\|1304135_1305194_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4

DBSCAN-SWA_3

1418789 : 1423746

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ36990.1\|1418789_1419539_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-62	50.2
AVJ36991.1\|1419538_1420216_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-43	52.5
AVJ36992.1\|1420423_1421260_+	peptigoglycan-binding protein LysM	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
AVJ36993.1\|1421365_1422370_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AVJ36994.1\|1422569_1422779_-	cold-shock protein CapB	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AVJ36995.1\|1423179_1423746_+	dCTP deaminase	S5VM63	Pseudomonas_phage	9.6e-75	73.8

DBSCAN-SWA_4

3650883 : 3660853

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ38849.1\|3650883_3651708_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.6e-105	71.6
AVJ38850.1\|3652011_3652614_+	hypothetical protein	NA	NA	NA	NA
AVJ41107.1\|3652742_3653237_+	M48 family peptidase	NA	NA	NA	NA
AVJ38851.1\|3653296_3654478_-	CoA transferase	NA	NA	NA	NA
AVJ38852.1\|3654635_3655028_+	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.6e-55	82.3
AVJ38853.1\|3655029_3655380_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	6.9e-39	69.4
AVJ38854.1\|3655379_3655658_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	6.9e-26	58.6
AVJ38855.1\|3655654_3655990_+	sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	2.6e-43	75.7
AVJ38856.1\|3655986_3656988_+	hypothetical protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.0e-168	86.6
AVJ38857.1\|3657076_3658072_+	glutathione-dependent reductase	NA	NA	NA	NA
AVJ38858.1\|3658177_3659572_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AVJ38859.1\|3659572_3660853_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-96	52.6

DBSCAN-SWA_5

5185227 : 5235228

Pseudomonas_phage(61.9%)

holin,plate,tail,protease,integrase

attL 5200284:5200301|attR 5244523:5244540

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ40166.1\|5185227_5187138_-\|protease	ATP-dependent metalloprotease	I3UL75	Ostreococcus_lucimarinus_virus	6.5e-115	48.7
AVJ40167.1\|5187338_5187989_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
AVJ40168.1\|5188095_5188404_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
AVJ40169.1\|5188427_5188832_-	MFS transporter	NA	NA	NA	NA
AVJ40170.1\|5188860_5189337_-	transcription elongation factor GreA	NA	NA	NA	NA
AVJ40171.1\|5189333_5192555_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
AVJ40172.1\|5192660_5193797_-	carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.4e-48	34.0
AVJ40173.1\|5194056_5194863_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
AVJ40174.1\|5194873_5195998_-	molecular chaperone DnaJ	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	2.1e-28	32.2
AVJ40175.1\|5196314_5198231_-	molecular chaperone DnaK	E5ESM6	Bathycoccus_sp._RCC1105_virus	1.9e-146	47.5
AVJ40176.1\|5198333_5198894_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AVJ40177.1\|5199148_5200822_+	DNA repair protein RecN	NA	NA	NA	NA
5200284:5200301	attL	NA	NA	NA	NA
AVJ40178.1\|5200907_5201312_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
AVJ40179.1\|5201410_5201938_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AVJ40180.1\|5202001_5202304_-	RnfH family protein	NA	NA	NA	NA
AVJ40181.1\|5202296_5202731_-	ubiquinone-binding protein	NA	NA	NA	NA
AVJ40182.1\|5202899_5203382_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	8.6e-24	42.7
AVJ40183.1\|5203417_5204185_-	transcriptional regulator PdhR	NA	NA	NA	NA
AVJ40184.1\|5204436_5206131_+	L-lactate permease	NA	NA	NA	NA
AVJ40185.1\|5206200_5209011_+	4Fe-4S ferredoxin	NA	NA	NA	NA
AVJ40186.1\|5209161_5209440_+	hypothetical protein	NA	NA	NA	NA
AVJ40187.1\|5210384_5210654_+	hypothetical protein	NA	NA	NA	NA
AVJ40188.1\|5210654_5211047_+	hypothetical protein	NA	NA	NA	NA
AVJ40189.1\|5211277_5211655_+	hypothetical protein	NA	NA	NA	NA
AVJ40190.1\|5211894_5212221_+	Holliday junction resolvase	NA	NA	NA	NA
AVJ40191.1\|5212265_5212865_-	hypothetical protein	NA	NA	NA	NA
AVJ40192.1\|5213134_5213353_+	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	4.4e-20	74.6
AVJ40193.1\|5213947_5214145_+	hypothetical protein	A0A1B0VMB6	Pseudomonas_phage	3.5e-16	67.2
AVJ40194.1\|5214176_5214416_+	excisionase	NA	NA	NA	NA
AVJ40195.1\|5214409_5214643_+	hypothetical protein	A0A2H4JA17	uncultured_Caudovirales_phage	1.3e-30	84.2
AVJ40196.1\|5215025_5215559_-	chitinase	A0A059VA40	Pseudomonas_phage	4.2e-72	77.4
AVJ40197.1\|5215545_5216076_-	hypothetical protein	A0A1S5R1J2	Pseudomonas_phage	5.2e-22	49.0
AVJ40198.1\|5217048_5217648_-\|tail	phage tail protein	B5TK76	Pseudomonas_phage	1.4e-84	74.4
AVJ40199.1\|5217638_5218676_-\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	1.3e-130	68.4
AVJ40200.1\|5218665_5219064_-	hypothetical protein	B5TK74	Pseudomonas_phage	2.3e-43	64.4
AVJ40201.1\|5219060_5219570_-	hypothetical protein	B5TK73	Pseudomonas_phage	1.9e-58	68.1
AVJ41153.1\|5220008_5220155_-	hypothetical protein	NA	NA	NA	NA
AVJ40202.1\|5220156_5220543_-	hypothetical protein	NA	NA	NA	NA
AVJ40203.1\|5220539_5220863_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.9e-14	41.8
AVJ40204.1\|5220852_5221257_+	hypothetical protein	NA	NA	NA	NA
AVJ40205.1\|5221395_5221638_-	hypothetical protein	NA	NA	NA	NA
AVJ40206.1\|5222405_5222795_-	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	1.1e-42	64.1
AVJ40207.1\|5222791_5223079_-	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	2.7e-25	61.8
AVJ40208.1\|5223071_5223752_-	hypothetical protein	A0A2D1GND4	Pseudomonas_phage	8.1e-44	49.7
AVJ40209.1\|5224000_5225206_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	2.9e-177	79.9
AVJ40210.1\|5225186_5226362_+	(p)ppGpp synthetase	A0A1B0VBT5	Salmonella_phage	6.5e-33	31.9
AVJ40211.1\|5226823_5227075_+	hypothetical protein	B5TK57	Pseudomonas_phage	9.0e-09	54.8
AVJ40212.1\|5227187_5228213_+	hypothetical protein	NA	NA	NA	NA
AVJ40213.1\|5228328_5229762_+	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA
AVJ40214.1\|5229777_5230266_-	TIGR00645 family protein	NA	NA	NA	NA
AVJ40215.1\|5230429_5232253_+	hypothetical protein	NA	NA	NA	NA
AVJ40216.1\|5232260_5232578_-	hypothetical protein	NA	NA	NA	NA
AVJ40217.1\|5232789_5235228_-\|protease	ATP-dependent protease	NA	NA	NA	NA
5244523:5244540	attR	NA	NA	NA	NA

DBSCAN-SWA_6

5574931 : 5623645

Tupanvirus(20.0%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ40527.1\|5574931_5575432_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
AVJ40528.1\|5575605_5576493_+	acyltransferase	NA	NA	NA	NA
AVJ40529.1\|5576489_5577062_-	hypothetical protein	NA	NA	NA	NA
AVJ40530.1\|5577188_5577833_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AVJ40531.1\|5577829_5578507_+	anti-sigma factor	NA	NA	NA	NA
AVJ40532.1\|5578583_5579042_+	hypothetical protein	NA	NA	NA	NA
AVJ40533.1\|5579167_5580367_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	29.7
AVJ40534.1\|5580551_5581409_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AVJ40535.1\|5581418_5582051_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
AVJ40536.1\|5582183_5585201_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
AVJ40537.1\|5585197_5585500_-	sarcosine oxidase subunit delta family protein	NA	NA	NA	NA
AVJ40538.1\|5585515_5586766_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
AVJ40539.1\|5586788_5588042_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.3e-99	52.5
AVJ40540.1\|5588212_5588941_-	conjugal transfer protein TraX	NA	NA	NA	NA
AVJ40541.1\|5589031_5590072_+	low specificity L-threonine aldolase	NA	NA	NA	NA
AVJ40542.1\|5590248_5590449_+	hypothetical protein	NA	NA	NA	NA
AVJ40543.1\|5590500_5591601_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AVJ40544.1\|5591882_5593178_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
AVJ40545.1\|5593955_5594726_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AVJ40546.1\|5594736_5595957_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
AVJ40547.1\|5595956_5597912_-	(Fe-S)-binding protein	NA	NA	NA	NA
AVJ40548.1\|5598096_5600157_-	N-methylproline demethylase	NA	NA	NA	NA
AVJ40549.1\|5600172_5600703_-	hydrocarbon binding protein	NA	NA	NA	NA
AVJ40550.1\|5600779_5601757_-	membrane dipeptidase	NA	NA	NA	NA
AVJ40551.1\|5601976_5602378_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AVJ40552.1\|5602419_5602836_+	hypothetical protein	NA	NA	NA	NA
AVJ40553.1\|5602960_5604139_-	hypothetical protein	NA	NA	NA	NA
AVJ40554.1\|5604207_5605185_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVJ40555.1\|5605359_5606304_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AVJ40556.1\|5606392_5607280_+	NADPH:quinone reductase	NA	NA	NA	NA
AVJ40557.1\|5607423_5608389_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
AVJ40558.1\|5608506_5608983_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
AVJ40559.1\|5609010_5610171_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
AVJ40560.1\|5610429_5610693_+	hypothetical protein	NA	NA	NA	NA
AVJ40561.1\|5610788_5611892_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AVJ40562.1\|5612401_5613778_-	L-serine ammonia-lyase	NA	NA	NA	NA
AVJ40563.1\|5614195_5615143_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AVJ40564.1\|5615213_5616059_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AVJ40565.1\|5616055_5617234_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.9e-26	37.1
AVJ40566.1\|5617284_5619276_-	beta-aspartyl-peptidase	A0A2I7QNT1	Vibrio_phage	3.1e-19	28.2
AVJ40567.1\|5619610_5620204_+	transcriptional regulator BetI	NA	NA	NA	NA
AVJ40568.1\|5620314_5621787_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AVJ41161.1\|5621941_5623645_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.4e-51	30.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023272

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection