CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023268	Serratia sp. MYb239 chromosome, complete genome	4 crisprs	DEDDh,DinG,csa3,cas3,RT	0	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023268_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023268_1

450993-451076

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCGAGCGGGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023268_1

>merge|CP023268|1|450993-451076|CRISPRCasFinder
GTGTTCCCCGCGCGAGCGGGGATAAACCGGCGACGGAGTCACCAATCATGACGAAATCATCGTGTTCCCCGCGTGAGCGGGGAT

>CP023268|1|1|450993-451076|CRISPRCasFinder
GTGTTCCCCGCGCGAGCGGGGAT	AAACCGGCGACGGAGTCACCAATCATGACGAAATCATC
GTGTTCCCCGCGTGAGCGGGGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP023268.1\|AVJ16011.1\|442385_443597_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236845
CP023268.1\|AVJ16021.1\|453763_454267_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
CP023268.1\|AVJ16015.1\|446328_447342_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
CP023268.1\|AVJ16017.1\|448505_449660_+\|antibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
CP023268.1\|AVJ16024.1\|456718_457345_+\|lysine-transporter-LysE	unknown	unknown	gnl\|CDD\|224199
CP023268.1\|AVJ19967.1\|453248_453770_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
CP023268.1\|AVJ16022.1\|455377_455599_+\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ16009.1\|439324_440209_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
CP023268.1\|AVJ16013.1\|443858_444725_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|375319
CP023268.1\|AVJ16020.1\|452000_452996_-\|protease	unknown	unknown	gnl\|CDD\|223896
CP023268.1\|AVJ16016.1\|447552_448524_+\|secretion-protein-HlyD	unknown	unknown	gnl\|CDD\|235136
CP023268.1\|AVJ16014.1\|444846_446286_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
CP023268.1\|AVJ16012.1\|443596_443836_+\|SirA-like-protein	unknown	unknown	gnl\|CDD\|236822
CP023268.1\|AVJ16018.1\|449656_450796_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
CP023268.1\|AVJ16019.1\|451110_451989_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
CP023268.1\|AVJ16023.1\|455717_456206_-\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP023268.1\|AVJ19968.1\|454253_454517_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178979
CP023268.1\|AVJ16026.1\|458127_458832_-\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ16025.1\|457712_458135_-\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ16010.1\|440398_442255_+\|DEAD/DEAH-family-ATP-dependent-RNA-helicase	unknown	unknown	gnl\|CDD\|236941

Protein	Function_ID	Function_description	E-value
CP023268.1\|AVJ16011.1\|442385_443597_+\|hypothetical-protein	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	0
CP023268.1\|AVJ16021.1\|453763_454267_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	8.76114e-54
CP023268.1\|AVJ16015.1\|446328_447342_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
CP023268.1\|AVJ16017.1\|448505_449660_+\|antibiotic-ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.48681e-19
CP023268.1\|AVJ16024.1\|456718_457345_+\|lysine-transporter-LysE	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	7.42648e-28
CP023268.1\|AVJ19967.1\|453248_453770_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	3.13673e-70
CP023268.1\|AVJ16009.1\|439324_440209_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
CP023268.1\|AVJ16013.1\|443858_444725_-\|transcriptional-regulator	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.36978e-48
CP023268.1\|AVJ16020.1\|452000_452996_-\|protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.47266e-117
CP023268.1\|AVJ16016.1\|447552_448524_+\|secretion-protein-HlyD	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.32571e-38
CP023268.1\|AVJ16014.1\|444846_446286_+\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.1882e-40
CP023268.1\|AVJ16012.1\|443596_443836_+\|SirA-like-protein	gnl\|CDD\|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	3.31176e-50
CP023268.1\|AVJ16018.1\|449656_450796_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.1565e-24
CP023268.1\|AVJ16019.1\|451110_451989_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
CP023268.1\|AVJ16023.1\|455717_456206_-\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.49399e-42
CP023268.1\|AVJ19968.1\|454253_454517_-\|hypothetical-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	5.43134e-35
CP023268.1\|AVJ16010.1\|440398_442255_+\|DEAD/DEAH-family-ATP-dependent-RNA-helicase	gnl\|CDD\|236941	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.	0

>CP023268.1|AVJ16018.1|449656_450796_+|ABC-transporter-permease
MKSYWQTFSRVLIGMLERPMWLMLILSLCVMSLVYANRSVWDLPVGVIDQDHSSASRELIRQLDATSKIAIKTYDSLDQAQRDLGWRELFAVIIMPVDLEKKILHGENIVVPVYGDATNRLANGQIQQDVVTAYQQLLNQYNTSLLLRSGFSERQAQIILTPIQGQTLDVFNPGISFAAIVFPGLLVMLLQHSLLIASVRVSIALKSAPSGKPSIPVYLGGLSALLPIWLFLSIVLFVLWPWVLGYRQTANIAEVLLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQAMPGWVRAISYCIPSTWATKAIAGVNQMGMSLNEVGNDVLMLLLLGAVYTVIGIGVGLVHNSVALRSLFRKRRA
>CP023268.1|AVJ16017.1|448505_449660_+|antibiotic-ABC-transporter-permease
MAMERVRAGWRCFSHAFSRECRVAFRSPVIHWLGWLFPLILFGLISSNFSEGTLLNLPVSVVDNDHSPLSKSLVRKLDAGSHAHVEAHDGGLSESLRRLRSAQDYALLYVPPDLEANALAGKQPSIVLYYNALFYGAGLYSTQDFSGLITETNGSYRSIIAASMGKTLPPLADVTLNYGSLFNASGSYIYYQQFAATIHLLQLFVVTCMIYVMARSKSLLSARPFSLALLGKLAPYTISFTTLLMIEIAALVGIFDARVSGNPLFMLLIGFFYVAAAQSIGLLLFTFTGSAITAYSLIGILVSIAMTYSGMAVPELSMPLPVRIISNIEPLTHALYAMFDVFLRQVPARAIFGVCALLLVYPLVTAFLVRNRLPKRLAKDEGAL
>CP023268.1|AVJ16016.1|447552_448524_+|secretion-protein-HlyD
MNKKTLFTLLLVVIAIAMAVLFRSHNQDLLLQGEVDAPEVIVASKAKGRVVERLIERGDDVKAGQVMITLDSPELLAQLRSAQATRDEAKAQLDQSLHGTREENIRSLRASLAQAQAELRNAQHDYDRNRSVAAKGYISKSELDSSRRSRDTAYQQVQDAKAKLDEGINGDRIELRQQYAAALRAAEENLLEVQAQADDLQVKAPVDGEVGPIPAEVGELLNASSPLVTLIRLPDAYFVFNLREDILANIRKGDKVKLRVPALKDKVIDAEVRYIAPLGDYATKRATRATGDFDLKTFEVRLYPAQPIEGLRPGMSSLWQWKE
>CP023268.1|AVJ16015.1|446328_447342_-|LLM-class-flavin-dependent-oxidoreductase
MTQNASVPLSVLDLSPIPQGAKARDAFHCSLDLAQHAEKWGFQRYWLAEHHNMTGIGSAATSVLLGYLAAGTDTIRLGSGGVMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGTDQRTMMALRRHLSGEVDNFPRDVQELQHYFAEVQPGQPVQAVPGQGLHVPIWLLGSSLYSAQLSAKLGLPFAFASHFAPDMLFQALRLYRENYQPSERWPQPHAMVCVNVIAADSERDARFLFSSMQQQFINLRRGEPGPLPPPVDNIHALWSAGEQYGVEQALRMSIVGDENNVREGLQALLRETEADEIMVNGQIFDHRARLRSFEIVAQVKDALTRG
>CP023268.1|AVJ16014.1|444846_446286_+|MFS-transporter
MSTPSSAAVLGRAGLIILLAGQLLPMIDFSIVNVGLDAMAQSLHATPTQLELIVAVYGVAFAVCLAMGGRMGDNLGRRRLFLWGVRLFALASLMCGLANSVWLLLVARTLQGVGAAMIVPQIMATIHVCLRGREHARAMALYGGIGGLAFIIGQVLGGLLVSLDIAGYGWRSVFLINIPLCVLVLVCAHRWVPDTRAQRRVNIDWPGTLLLALTIVCLLFPLALGPVWHWQWPCLALLALSGPLLLQLWRVERRQERRNNFPLLPPALLRLASVRFGLTIAILFFSCWSGFMFVMALTLQAGAKLNAFQSGNAFIALGVAYFISSLLSSTVIEHFGKVRTLLFGCLIQIGGLLALMLTMLLVWPQPDIVNLIPATLLIGAGQALIVSGFFRIGLADVPVEHAGSGSALLATVQQTSLGLGPILLGTVLVQVLHASPGDYLHALLAALVLELLLMLALLLRTLLVLRADRRLAAGQPSRT
>CP023268.1|AVJ16013.1|443858_444725_-|transcriptional-regulator
MSEITSPTDAGQADNRKQLGAFLRARRESLDPNRLGLPRMRQRRTPGLRREEVAQLADVGITWYTWLEQGRAIQASTKTLSAIAHALQCNEAETHHLFRLAGQSLPASAQHGGCEKLSPYGQRLLDQLDPLPAIISNARFDILGFNRAYCLLMGVDLATLPPEDRNCIYLAFTHEQWRASQLDWDDIMPKMVALFRAQMAEHLGDPVWERQLARYLSVSEDFRALWERHEVRSIDNNVKRFLHPQVGEMSLRQNNWWSAPRNGDRMLVYMPADEQSERRLQQLTGGAG
>CP023268.1|AVJ16012.1|443596_443836_+|SirA-like-protein
MTQQTIVPDYRLDMLGEPCPYPAVATLEAMPQLKAGEILEVISDCPQSINNIPLDARNHGYKVLDIQQDGPTIRYLIQR
>CP023268.1|AVJ16011.1|442385_443597_+|hypothetical-protein
MNWQQFKTDYLVRFWAPLPAVIAAGLLATYYFGLTGTFWAVTGEFTRWGGHVLQWLGLHPEQWAYFKVIGLEGTPLTRIDGRMIIGMFAGCIAAALWANNIKLRRPQHRIRIVQALLGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWLFALATAAGSYFGAKFTLLPLFRVPIKLQKVQAAAPLTQLPQQARRRFRLGMLVFLLMSAWSLWTLFDAPKLGIAMLFGIAFGLLIERAQICFTSAFRDLWITGRTHMARAIILGMAVSAIGIFSYVQLGVAPKIMWAGPNALIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNIIGATLLAYYWDALAPSLATDYDKINLLEVFGPTGGLLVTYLLLALALVAMLWWEKRFFRAKARAERVDARSM
>CP023268.1|AVJ16010.1|440398_442255_+|DEAD/DEAH-family-ATP-dependent-RNA-helicase
MTTELETSFADLGLSAPIISALNDLGYVKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDMYRALLAKLQPEEELEMETLAAALLKMAQGERPLILPPDPVFKPRKPREFNDRDDRRGDRRDGDRPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEILNHFTRTRILNKPMNMQLLGDAQPHDRRERRDGGNRRPFNGERREGGPRRSFGERREGGNAAGNGERRGGNANRERAPRRRFGDA
>CP023268.1|AVJ16009.1|439324_440209_+|lipoprotein-NlpI
MKLFLRWCYVATALMLAGCSNNDWRKDEVLAIPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPNDPFRSLWLYLVEREIDPKMAVTALQQRYDKADRGQWGWNIVEFYLGDISENTLMERLKADATDNTSLAEHLSETDFYLGKHYLSLGDKNSASALFKLTVANNVHNFVEHRYALLELALLGQEQDDLSESDQQ
>CP023268.1|AVJ16019.1|451110_451989_-|U32-family-peptidase
MKYALGPVLYYWPKTETESFYQQAMHSSADIIYLGESVCTKRREMKVGDWLALAKTVAQSGKQVVLSTLALLQAPSELNELKRYVENGEFLIEANDLGTVNMAAERGLPFVAGHALNCYNAYTLRLLHKQGMTRWCMPVELSRDWLGKVLEQCGELGFRRGFEVEVLGYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRAMRSQEDQQVFVLNGIQTMSGYCYNLGNELSGMQELVDIVRLSPQGVETLTMLEQFRANENAQQPLALAGSSDCNGYWRRVAGLELVQ
>CP023268.1|AVJ16020.1|452000_452996_-|protease
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFSEKKLQEAVEYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYQRHFAVHRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYQEGENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLALLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDRCIADPAGYQPDAGWMAALGAMSEGTQTTLGAYHRKWQ
>CP023268.1|AVJ19967.1|453248_453770_+|SCP2-domain-containing-protein
MLEKLRSRIVRQGPSLLRVPLKLTPFALQRQLLEQVLGWQFRQALADGDLEFLESRWLKIEVRDLALQWFMTVENDRLVVRQHAQADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELEAMPAPLRIGLLQLAEFVEAGLQEGAEPSSRVVAPC
>CP023268.1|AVJ16021.1|453763_454267_+|GNAT-family-N-acetyltransferase
MLIRVEIPVDAAGIDALLRSAFGRDDEADLVRQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVEGEDRQWVGLAPLAVEERLRRQGLGEKLVYEGLDALNEFSYAAVVVLGEPAYYSRFGFKPAAEFGLSCRWPGCEQAFQVYPLAQDALDGVNGAVEYAAPFNRF
>CP023268.1|AVJ19968.1|454253_454517_-|hypothetical-protein
MLRLPSGMLYTGITTDVARRLAQHQAGKGAKALRGKGELQLAFHCAVGDRSLALRLEYRIKQLSKVQKERLVSHPPLSLDYLLVKNG
>CP023268.1|AVJ16022.1|455377_455599_+|hypothetical-protein
MKRVIAIIVGTAIGIVLIWLAYPYISDWLVGPVHGEDQMSANFVLLLVGLGVGCVVGSLVGGLAYSRLKKRMR
>CP023268.1|AVJ16023.1|455717_456206_-|AsnC-family-transcriptional-regulator
MPLDMTEMKILRLLQDDARVTNQALAEKIGMSASPCWRKVRKLEEEEVIQGYRAVLDRKKIGLGVMVFIRVAIDSHSETEAKKFEEEVTALEDVVACYSIGGDADFLLQVVAPDLDSYADFAMSVVRRLPGIKEMQSMFVLKEIKPLVSYPIKKTAQTKSGQ
>CP023268.1|AVJ16024.1|456718_457345_+|lysine-transporter-LysE
MLGTAQIISYAAALGLAAAVPGPGMTALVARSVSGGAVTGFTMLTGLILGDLIYLSTAVFGLAVIAHTYTSLFTLINWAAACYLFFLAWQFWRYQPQAVNIDQKATRRELTSAWLSGLTITLGNPKTIAFYLAILPLVISLDRVSLQVWGTMLVPLTMSVLLAVGAIFILAAIKIRRFLTSASSQRILFRTTGVIMVLAAFGMVMKSL
>CP023268.1|AVJ16025.1|457712_458135_-|hypothetical-protein
MRKSVKAIIVTGVVITAAFVWAWPYIAMNFAGSAHYTEQDKREYEFYTPDLLKAMPRISPRYDFDFANITGPSSHVYAIRYYDTDDSSKVDAYLETAGYKKQKECFIEATCWTGDDPQETVTVSMLESSKSILVSVVYNF
>CP023268.1|AVJ16026.1|458127_458832_-|hypothetical-protein
MSKRSDIIDGAEASSAPYGLVYTEVIGWIDLGHAQGTDIRNLMRTIDSGESSGEEYYRVSYSQSMRDPTKTIKMGKFITWRIKHGHSYYERQSIALAMMMSLSLKFEGLQASFPMSLVTDSGFSGEDLISNLLGFYRAVSIQNPFSMLRPVSKAEALKRWDHYGKIGSWKNETFKPILFPDPKRFPHATPRRGELPSFMKTVRPWSDFRSGIVKIATANGSYMDSARNGVLPYA

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Crispr_ID: CP023268_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023268_2

457553-457642

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023268_2

>merge|CP023268|2|457553-457642|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAATCCAAGAATCAATTTGACACCAAAAGTTTAATCGTTCACTGCCGTACAGACAGCTTAGAAAT

>CP023268|2|2|457553-457642|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CCAAGAATCAATTTGACACCAAAAGTTTAATC
GTTCACTGCCGTACAGACAGCTTAGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP023268.1\|AVJ16023.1\|455717_456206_-\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP023268.1\|AVJ16022.1\|455377_455599_+\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ19968.1\|454253_454517_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178979
CP023268.1\|AVJ16017.1\|448505_449660_+\|antibiotic-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
CP023268.1\|AVJ16024.1\|456718_457345_+\|lysine-transporter-LysE	unknown	unknown	gnl\|CDD\|224199
CP023268.1\|AVJ19969.1\|459782_460301_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378506
CP023268.1\|AVJ19967.1\|453248_453770_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
CP023268.1\|AVJ16021.1\|453763_454267_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
CP023268.1\|AVJ16030.1\|462467_463028_-\|ribose-1,5-bisphosphokinase	unknown	unknown	gnl\|CDD\|236648
CP023268.1\|AVJ16032.1\|464163_464868_-\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118
CP023268.1\|AVJ16020.1\|452000_452996_-\|protease	unknown	unknown	gnl\|CDD\|223896
CP023268.1\|AVJ16028.1\|460578_461013_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
CP023268.1\|AVJ16026.1\|458127_458832_-\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ16031.1\|463027_464164_-\|phosphonate-metabolism-protein-PhnM	unknown	unknown	gnl\|CDD\|237967
CP023268.1\|AVJ16029.1\|461679_462477_-\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
CP023268.1\|AVJ16018.1\|449656_450796_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
CP023268.1\|AVJ16019.1\|451110_451989_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
CP023268.1\|AVJ19970.1\|461090_461732_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187560
CP023268.1\|AVJ16027.1\|459495_459786_-\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ16025.1\|457712_458135_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP023268.1\|AVJ16023.1\|455717_456206_-\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.49399e-42
CP023268.1\|AVJ16021.1\|453763_454267_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	8.76114e-54
CP023268.1\|AVJ19968.1\|454253_454517_-\|hypothetical-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	5.43134e-35
CP023268.1\|AVJ16017.1\|448505_449660_+\|antibiotic-ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.48681e-19
CP023268.1\|AVJ16024.1\|456718_457345_+\|lysine-transporter-LysE	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	7.42648e-28
CP023268.1\|AVJ19969.1\|459782_460301_-\|hypothetical-protein	gnl\|CDD\|378506	pfam10908, DUF2778, Protein of unknown function (DUF2778). This is a bacterial family of uncharacterized proteins.	1.31408e-43
CP023268.1\|AVJ19967.1\|453248_453770_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	3.13673e-70
CP023268.1\|AVJ16030.1\|462467_463028_-\|ribose-1,5-bisphosphokinase	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	1.11564e-93
CP023268.1\|AVJ16032.1\|464163_464868_-\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	3.22724e-141
CP023268.1\|AVJ16020.1\|452000_452996_-\|protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.47266e-117
CP023268.1\|AVJ16029.1\|461679_462477_-\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	7.75594e-154
CP023268.1\|AVJ16031.1\|463027_464164_-\|phosphonate-metabolism-protein-PhnM	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
CP023268.1\|AVJ16018.1\|449656_450796_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.1565e-24
CP023268.1\|AVJ16019.1\|451110_451989_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
CP023268.1\|AVJ19970.1\|461090_461732_+\|hypothetical-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.83772e-67
CP023268.1\|AVJ16028.1\|460578_461013_+\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	5.41145e-89

>CP023268.1|AVJ16024.1|456718_457345_+|lysine-transporter-LysE
MLGTAQIISYAAALGLAAAVPGPGMTALVARSVSGGAVTGFTMLTGLILGDLIYLSTAVFGLAVIAHTYTSLFTLINWAAACYLFFLAWQFWRYQPQAVNIDQKATRRELTSAWLSGLTITLGNPKTIAFYLAILPLVISLDRVSLQVWGTMLVPLTMSVLLAVGAIFILAAIKIRRFLTSASSQRILFRTTGVIMVLAAFGMVMKSL
>CP023268.1|AVJ16023.1|455717_456206_-|AsnC-family-transcriptional-regulator
MPLDMTEMKILRLLQDDARVTNQALAEKIGMSASPCWRKVRKLEEEEVIQGYRAVLDRKKIGLGVMVFIRVAIDSHSETEAKKFEEEVTALEDVVACYSIGGDADFLLQVVAPDLDSYADFAMSVVRRLPGIKEMQSMFVLKEIKPLVSYPIKKTAQTKSGQ
>CP023268.1|AVJ16022.1|455377_455599_+|hypothetical-protein
MKRVIAIIVGTAIGIVLIWLAYPYISDWLVGPVHGEDQMSANFVLLLVGLGVGCVVGSLVGGLAYSRLKKRMR
>CP023268.1|AVJ19968.1|454253_454517_-|hypothetical-protein
MLRLPSGMLYTGITTDVARRLAQHQAGKGAKALRGKGELQLAFHCAVGDRSLALRLEYRIKQLSKVQKERLVSHPPLSLDYLLVKNG
>CP023268.1|AVJ16021.1|453763_454267_+|GNAT-family-N-acetyltransferase
MLIRVEIPVDAAGIDALLRSAFGRDDEADLVRQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVEGEDRQWVGLAPLAVEERLRRQGLGEKLVYEGLDALNEFSYAAVVVLGEPAYYSRFGFKPAAEFGLSCRWPGCEQAFQVYPLAQDALDGVNGAVEYAAPFNRF
>CP023268.1|AVJ19967.1|453248_453770_+|SCP2-domain-containing-protein
MLEKLRSRIVRQGPSLLRVPLKLTPFALQRQLLEQVLGWQFRQALADGDLEFLESRWLKIEVRDLALQWFMTVENDRLVVRQHAQADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELEAMPAPLRIGLLQLAEFVEAGLQEGAEPSSRVVAPC
>CP023268.1|AVJ16020.1|452000_452996_-|protease
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFSEKKLQEAVEYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYQRHFAVHRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYQEGENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLALLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDRCIADPAGYQPDAGWMAALGAMSEGTQTTLGAYHRKWQ
>CP023268.1|AVJ16019.1|451110_451989_-|U32-family-peptidase
MKYALGPVLYYWPKTETESFYQQAMHSSADIIYLGESVCTKRREMKVGDWLALAKTVAQSGKQVVLSTLALLQAPSELNELKRYVENGEFLIEANDLGTVNMAAERGLPFVAGHALNCYNAYTLRLLHKQGMTRWCMPVELSRDWLGKVLEQCGELGFRRGFEVEVLGYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRAMRSQEDQQVFVLNGIQTMSGYCYNLGNELSGMQELVDIVRLSPQGVETLTMLEQFRANENAQQPLALAGSSDCNGYWRRVAGLELVQ
>CP023268.1|AVJ16018.1|449656_450796_+|ABC-transporter-permease
MKSYWQTFSRVLIGMLERPMWLMLILSLCVMSLVYANRSVWDLPVGVIDQDHSSASRELIRQLDATSKIAIKTYDSLDQAQRDLGWRELFAVIIMPVDLEKKILHGENIVVPVYGDATNRLANGQIQQDVVTAYQQLLNQYNTSLLLRSGFSERQAQIILTPIQGQTLDVFNPGISFAAIVFPGLLVMLLQHSLLIASVRVSIALKSAPSGKPSIPVYLGGLSALLPIWLFLSIVLFVLWPWVLGYRQTANIAEVLLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQAMPGWVRAISYCIPSTWATKAIAGVNQMGMSLNEVGNDVLMLLLLGAVYTVIGIGVGLVHNSVALRSLFRKRRA
>CP023268.1|AVJ16017.1|448505_449660_+|antibiotic-ABC-transporter-permease
MAMERVRAGWRCFSHAFSRECRVAFRSPVIHWLGWLFPLILFGLISSNFSEGTLLNLPVSVVDNDHSPLSKSLVRKLDAGSHAHVEAHDGGLSESLRRLRSAQDYALLYVPPDLEANALAGKQPSIVLYYNALFYGAGLYSTQDFSGLITETNGSYRSIIAASMGKTLPPLADVTLNYGSLFNASGSYIYYQQFAATIHLLQLFVVTCMIYVMARSKSLLSARPFSLALLGKLAPYTISFTTLLMIEIAALVGIFDARVSGNPLFMLLIGFFYVAAAQSIGLLLFTFTGSAITAYSLIGILVSIAMTYSGMAVPELSMPLPVRIISNIEPLTHALYAMFDVFLRQVPARAIFGVCALLLVYPLVTAFLVRNRLPKRLAKDEGAL
>CP023268.1|AVJ16025.1|457712_458135_-|hypothetical-protein
MRKSVKAIIVTGVVITAAFVWAWPYIAMNFAGSAHYTEQDKREYEFYTPDLLKAMPRISPRYDFDFANITGPSSHVYAIRYYDTDDSSKVDAYLETAGYKKQKECFIEATCWTGDDPQETVTVSMLESSKSILVSVVYNF
>CP023268.1|AVJ16026.1|458127_458832_-|hypothetical-protein
MSKRSDIIDGAEASSAPYGLVYTEVIGWIDLGHAQGTDIRNLMRTIDSGESSGEEYYRVSYSQSMRDPTKTIKMGKFITWRIKHGHSYYERQSIALAMMMSLSLKFEGLQASFPMSLVTDSGFSGEDLISNLLGFYRAVSIQNPFSMLRPVSKAEALKRWDHYGKIGSWKNETFKPILFPDPKRFPHATPRRGELPSFMKTVRPWSDFRSGIVKIATANGSYMDSARNGVLPYA
>CP023268.1|AVJ16027.1|459495_459786_-|hypothetical-protein
MKKAFLILAKLAVFIIFLMNVGVWFPFYHFIRRNIHHVMSLDTATNITDIIGGYPEPWDFMAIAIVLFLNTIISIILCKLTFMLARHIRKKMNKSD
>CP023268.1|AVJ19969.1|459782_460301_-|hypothetical-protein
MALYGKFIVNDADYSPLTIYGIGTFMAFSGDGNYRNAPGCGMIPNEGPIPSGKYWIVDRPTGGIREPIATWFSDVLNRNLRNIPTGKNEWFGLFRDDGKIDDHTWINGVKRGNFRLHPGTISYGCITLKHHSDFAAIRSALLRTKTINIRNMRLRTYGIIDVISNGECKVSG
>CP023268.1|AVJ16028.1|460578_461013_+|hypothetical-protein
MEQSEQQQHIIRFLSKQHVLTLCAGNGVEMWCANCFYVFDAERMALWLMTEPHTRHGQLMQQHAEVVGTIAPKPKSIALIKGIQYRAEARILSGDEEQQARARYCKRFPVAKAMSATLWQLSLQEVKMTDNVLGFGTKLFWARS
>CP023268.1|AVJ19970.1|461090_461732_+|hypothetical-protein
MARVLITGATGLVGGELLRLLLADRRVTAITAPSRRPLPPHDKLTNPVGDDLFALLTELDQPVDAVFCCLGTTRQQAGSDGNFHYVDYTLVVESALTGRRLGAQHCLAVSAMGASPHSTFLYNRIKGEMEQALREQGWQRLTLVRPSMLLGKRTAPRLLERVAQPLFRLLPGRWKSVAARDVAQTLLEQAFSPGDGVRVLESDRLQHGERLAH
>CP023268.1|AVJ16029.1|461679_462477_-|phosphonate-metabolism-protein-PhnP
MQLTFLGTGGAQQVPAFGCACAICQRARREPARRRRACSAMLDYQGETTLIDAGLTSLERRFSAGQIQRFLLTHYHMDHVQGLFHLRWGCGSAIPVYGPPDEQGCDDLFRHPGILDFQPPLAPFVSITLGGLRITPLPLIHSKITHGYLIQSADRTLAYLTDTVGLPPDTLRFLQGVRLDLLVLDCSLPPQAQAPRNHNDLTRALEIQQRLLPQRTLLTHISHRLDAWLLTHPLPPGLELAYDGLCIDVSAPDAPRAAADRTPAP
>CP023268.1|AVJ16030.1|462467_463028_-|ribose-1,5-bisphosphokinase
MAQLIYLMGASGSGKDSLLAALRNAADSAPLVAHRYITRPAQAGCENHVALSEREFLRRRANGLFALDWQAHHTRYALGIEVDLWLLQGIDVVINGSRAYLPYARQRYGAQLLPLCLQVEPAVLRRRLELRGREDSGQIEQRLARAAAYSVPSDCLRLDNNGELSETLAALLQLLTALRREETPCN
>CP023268.1|AVJ16031.1|463027_464164_-|phosphonate-metabolism-protein-PhnM
MIINNVKLVLDDQVVNGSLEMGDGVIRSFADGHSRLPQALDGEGGWLLPGLIELHTDNLDKFFMPRPNVDWPAHSAMSSHDALMVACGITTVLDAVAIGDVRDGGHRLENLQKMIDAVIHSQRAGVNRAEHRLHLRCELPNAGTLPLFEQLMDKPGVSLVSLMDHSPGQRQFASRAKYREYYQGKYNLSDAAMDEYEQQQVALSARWATPNRQAIAERCRERGIALASHDDATAAHVAESCALGSAIAEFPTTEEAARASHRQGLQVLMGAPNIVRGGSHSGNVAAHQLAAQGVLDILSSDYYPASLLDAAFLLAADARNGYDLPQSVAMVTRNPARALGLADRGTIAEGLRGDLVLARAHGEHIYVQHVWRQGRQVF
>CP023268.1|AVJ16032.1|464163_464868_-|phosphonate-C-P-lyase-system-protein-PhnL
MTIKIRVEHLSKTFVLHQQHGTRLPVLHDASLTVSAGECVVLHGHSGSGKSTLLRSLYANYLPDSGHIWLDHQGEWIDMAQAEARQILAVRRRTLGWVSQFLRVIPRISALEVVMQPLLELGVAHDECRERASALLSRLNVPQRLWGLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDARNSAAVVALVEQARRRGAAIVGIFHDDQVRTQVADRLHIMQAPQALETP

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Crispr_ID: CP023268_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023268_3

1959270-1959417

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP023268_3

>merge|CP023268|3|1959270-1959417|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAGCATTCTCCGCCGCCAGCGTATCACGCTCAGCGTTCACTGCCGTACAGGCAGCTTAGAAAAATGTTTGGGAGTCGATAAAAAACGGCTGGGCGTTCACTGCCGTACATGCCATTGATATA

>CP023268|3|3|1959270-1959417|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCATTCTCCGCCGCCAGCGTATCACGCTCAGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATGTTTGGGAGTCGATAAAAAACGGCTGGGC
GTTCACTGCCGTACATGCCATTGATATA

Protein	Signature genes	Signature genes Name	Protein_function
CP023268.1\|AVJ17321.1\|1957907_1958630_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239491
CP023268.1\|AVJ20047.1\|1950722_1951835_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
CP023268.1\|AVJ17318.1\|1954994_1955417_+\|DNA-polymerase-V-subunit-UmuD	unknown	unknown	gnl\|CDD\|182350
CP023268.1\|AVJ17315.1\|1952388_1952739_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226868
CP023268.1\|AVJ17332.1\|1967706_1969197_-\|aldehyde-dehydrogenase-PuuC	unknown	unknown	gnl\|CDD\|182108
CP023268.1\|AVJ17328.1\|1963983_1964598_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226233
CP023268.1\|AVJ17324.1\|1960688_1960889_+\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ17316.1\|1952758_1953385_-\|23S-rRNA-pseudouridine(2457)-synthase-RluE	unknown	unknown	gnl\|CDD\|183115
CP023268.1\|AVJ17327.1\|1963326_1963575_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
CP023268.1\|AVJ17326.1\|1962249_1962894_-\|agglutination-protein	unknown	unknown	gnl\|CDD\|226790
CP023268.1\|AVJ17319.1\|1955416_1956685_+\|DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
CP023268.1\|AVJ17329.1\|1964917_1965343_+\|universal-stress-protein-UspA	unknown	unknown	gnl\|CDD\|185073
CP023268.1\|AVJ17314.1\|1951932_1952379_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
CP023268.1\|AVJ17320.1\|1957195_1957465_+\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ17325.1\|1960987_1962253_-\|cysteine-desulfurase-like-protein	unknown	unknown	gnl\|CDD\|273906
CP023268.1\|AVJ17322.1\|1958700_1958991_-\|lipoprotein-bor	unknown	unknown	gnl\|CDD\|368828
CP023268.1\|AVJ17330.1\|1965621_1966377_+\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|379263
CP023268.1\|AVJ17317.1\|1953517_1954771_+\|isocitrate-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|180792
CP023268.1\|AVJ17323.1\|1959611_1960667_+\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ17331.1\|1966414_1967695_-\|gamma-glutamylputrescine-oxidoreductase	unknown	unknown	gnl\|CDD\|223737

Protein	Function_ID	Function_description	E-value
CP023268.1\|AVJ17321.1\|1957907_1958630_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239491	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.	8.01021e-78
CP023268.1\|AVJ20047.1\|1950722_1951835_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
CP023268.1\|AVJ17318.1\|1954994_1955417_+\|DNA-polymerase-V-subunit-UmuD	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	8.81328e-58
CP023268.1\|AVJ17315.1\|1952388_1952739_-\|hypothetical-protein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	2.57119e-33
CP023268.1\|AVJ17332.1\|1967706_1969197_-\|aldehyde-dehydrogenase-PuuC	gnl\|CDD\|182108	PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional.	0
CP023268.1\|AVJ17328.1\|1963983_1964598_-\|hypothetical-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	6.67097e-14
CP023268.1\|AVJ17325.1\|1960987_1962253_-\|cysteine-desulfurase-like-protein	gnl\|CDD\|273906	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. [Unknown function, Enzymes of unknown specificity].	3.35538e-172
CP023268.1\|AVJ17316.1\|1952758_1953385_-\|23S-rRNA-pseudouridine(2457)-synthase-RluE	gnl\|CDD\|183115	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE.	1.67316e-105
CP023268.1\|AVJ17326.1\|1962249_1962894_-\|agglutination-protein	gnl\|CDD\|226790	COG4340, COG4340, Uncharacterized protein conserved in bacteria [Function unknown].	5.90335e-71
CP023268.1\|AVJ17319.1\|1955416_1956685_+\|DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
CP023268.1\|AVJ17329.1\|1964917_1965343_+\|universal-stress-protein-UspA	gnl\|CDD\|185073	PRK15118, PRK15118, universal stress protein UspA.	1.43152e-30
CP023268.1\|AVJ17314.1\|1951932_1952379_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	9.22649e-61
CP023268.1\|AVJ17327.1\|1963326_1963575_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	1.71825e-05
CP023268.1\|AVJ17322.1\|1958700_1958991_-\|lipoprotein-bor	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	6.38932e-27
CP023268.1\|AVJ17330.1\|1965621_1966377_+\|3-oxoacyl-ACP-reductase	gnl\|CDD\|379263	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.	3.80116e-75
CP023268.1\|AVJ17317.1\|1953517_1954771_+\|isocitrate-dehydrogenase-(NADP(+))	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
CP023268.1\|AVJ17331.1\|1966414_1967695_-\|gamma-glutamylputrescine-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.16531e-77

>CP023268.1|AVJ17322.1|1958700_1958991_-|lipoprotein-bor
MKKLLAAVVLAMTVTGCAQQTFTMKHETVAVPKQTTTHHFFVSGIGQKKAIDAAAVCGGADKVVRTEVQQTFPNILLGIVTFGIYTPREARIYCAQ
>CP023268.1|AVJ17321.1|1957907_1958630_+|phosphatase-PAP2-family-protein
MQLHFKKRVAVCSMAALLFSASGAFAAESHGFLTPETAPDSLQILPPPPAENTTAFLNDKAAYETGKTLKDAQRQALAASDADYKNISAAFSAAFGEEISQEKMPALYALLQGVLQDSHDYAMRAAKDHYMRVRPFVVYKDSTCTPEKDKSMAKTGSYPSGHASFGWATALVLAEINPARETEILKRGYDFGQSRVVCGAHWQSDVDNGRLMGAAVVAALHSNQGFTDALAKAKAEFGKR
>CP023268.1|AVJ17320.1|1957195_1957465_+|hypothetical-protein
MKKLAFYKFIIGWGTANLGYAFAFLWLFIVWVIASHTVFRHEDYFHFKKILFNIITYGFNTWLDFAALYSTIFALLWALISVYRRKSVS
>CP023268.1|AVJ17319.1|1955416_1956685_+|DNA-polymerase-V-subunit-UmuC
MYALADVNSFYASCETLWRPDLRGRPVVVLSNNDGCVVARSEEAKALGIKMGVPYFKVKHPFERAGGIAFSSNYELYADMSMRVMSVLEGVAPRVEIYSIDESFMDLTGVRHCVDLATFGRQVRAKVLRDTGLTVGIGIAQTKTLAKLANHAAKKWPGTGGVVDLSSVGRQRKLMGLVSVAEVWGIGRRIAKKLQVMGIDTALQLADASTAMIRKNFSVVIEKTVRELRGEPCLELEEFAPTKQQILCSRSFGERITEYDDMRQAICMYATRAAEKLRGEHQYCMHISAWLKSSPFAINEQYYGNSASIKLSTPTQDTRDIIAAAMRCFDAIWQPGHRYQKAGVMLQDFFSHGVAQLGLFDEYQPQHNSERLMSVLDRINNSGRAKLWFAGQGMYQQWSMKREMLSPAYTTRVSDLPQARVC
>CP023268.1|AVJ17318.1|1954994_1955417_+|DNA-polymerase-V-subunit-UmuD
MTLFFPTPNPVKLELPLFSDKVPAGFPSPAADYVSSRIDLNEYCISHPNATYFLYATGDSMLEAGITEGSMLVVDRSIAPAHGDIVIACIAGEFTVKRLCLHPRAQLEPMNAKYEPIVLHDDGDSLEVVGVVVSSITRLK
>CP023268.1|AVJ17317.1|1953517_1954771_+|isocitrate-dehydrogenase-(NADP(+))
MESKVVVPAEGKKITVDAQGKLVVPHNPIIPFIEGDGIGVDVTPAMINVVNAAVDKAYHGERKISWMEIYTGEKSTHVYGKDVWLPDETLDLIRDYRVAIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENAEDIYAGIEWKAGSAEADKVIKFLRDEMGVQKIRFPEQCGIGVKPCSEEGTKRLVRAAIEYAITNDRDSVTLVHKGNIMKFTEGAFKDWGYELAREEFGGELIDGGPWLKIKNPNTGKEIVVKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSVILSAEMMLRHLGWFEAADLIVKGMEGAIAAKTVTYDFERLMEGAKLLKCSEFGDAIVEHM
>CP023268.1|AVJ17316.1|1952758_1953385_-|23S-rRNA-pseudouridine(2457)-synthase-RluE
MNKFPVKKHQVKRFSRPNSAKRPVPPGPRRVVLFNKPFDVLPQFTDEAGRSTLKEFIPFNDVYAAGRLDRDSEGLLVLTNDGKLQAQLTQPGKRTGKVYYVQVEGSPQESDLAQLRSGVTLKDGPTLPAGVERVAEPAWLWPRTPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHIGFPTLRLIRYSMGNLSLGDLQPGEWKTTDSP
>CP023268.1|AVJ17315.1|1952388_1952739_-|hypothetical-protein
MKTLGTLLLTTLLLTTLLCAAGAQAASFDCRKAASKDEQAICASRSLSDKDVEMATKYQFLRGLFAMGFRGEMQDRQNSWLAKRKQCGSDVSCLSNSYRQRIGELDAIYNKIDRPL
>CP023268.1|AVJ17314.1|1951932_1952379_-|NUDIX-hydrolase
MFKPHVTVANVVHAAGKFLIVEETVNHKALWNQPAGHLEAEETLLQAAERELWEETGIRAAPQSFLKMHQWIAPDGTPFLRFCFVVELPAIVPTAPQDSDIDRCLWLSADEILHAPNLRSPLVAESLRCYRQPERYPLSLIGSFNWPY
>CP023268.1|AVJ20047.1|1950722_1951835_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSDNSQKKVIVGMSGGVDSSVTAYLLQQEGYQVAGLFMKNWEEDDDEEYCSAATDLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRQDVDGKSRLLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVDGQTIGQHQGLMYHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLIVAQGHDHPRLMSLGLIAQQLHWVDRQPLTAPLRCTVKTRYRQQDLPCTITPIDDQRIEVRFDEPVAAVTPGQSAVFYQGEICLGGGIIEQRLPLEEG
>CP023268.1|AVJ17323.1|1959611_1960667_+|hypothetical-protein
MKYRKKRTTSIRESLDFMVDMVKKYFPVLVVFSTLYGSLLLFNYCVDYSVPFINVYTANYMLVFGILSLVIIMSVLVLPITLTFTGEFLAEKEHDRLVSGLTQCIFRDKELLVYFFIKIFQFSSFGLCLYFDSLPVYFYSSIVFVLSVVAAIITFKDFKGERLRSVVSFLFYYTIDTLICFSILITIYLLFPAEIKSINNVLKALVVVAVFIALSMSSGPFKGKGAVKTKNIMKKNRHAVRSMVIVLIVAEGIFASPFLMSDFIAPRVSSVIGFGNLNECFYAKDLTKYDIPQDMVSQTIRIDIVKLSIVARIGGEYYITTRLGEKAGFKFEADKLTEVACPMGLVKKSLI
>CP023268.1|AVJ17324.1|1960688_1960889_+|hypothetical-protein
MLNKISAILSLPLTLLCVSLSSMTIMGEHNSLVDVFLSVIVFFGFLNLFRIAGKLIAWFNGNANQA
>CP023268.1|AVJ17325.1|1960987_1962253_-|cysteine-desulfurase-like-protein
MTFTPERARAQFGALSQHYQDKPAIFFDGPGGSQVSHSVLEKMTGYLGSYNANLGGHYFSSQMTEQVMHNARASVRALLNAPSPDNIVFGMNMTSLTFHLSRIISRDWQPGDEIIVTALDHYANVSSWQQAAEDKQAIVHHIPLRPEDCTLDTERLCAQINDKTRLVAVTHASNVTGSVVDIRAITAAAQRVGAQVYVDAVHYAPHNLIDVQALGCDFLVCSAYKFFGPHIGMAYIAPQWLQRLRPYKVEPATDIGPGRFETGTQSFEGLAGVTAAIDYLAQWGTPGAPLRQRLQESFAAYHQHEEDLCRYFLQRLRQLEGARLYGYPEPDSTRRTPTFALTFKDFSPEQIAMLLGRHNICAGSGHFYAQGLIRQLNLQEHGGVLRIGMMHYNTRQEIDRLFEVLEDALAEADSPAAVDGR
>CP023268.1|AVJ17326.1|1962249_1962894_-|agglutination-protein
MLPGHENVVSMTSLSRQATQQLMPSFSDLPHTQHADGKYRLRRYSVITFRNNQVEDIGQRNFVQSDEFNHFQGNVVRHFEPIDSAVLQSEGMAEMCALFADVNGLPDGAKIEIHQMRVVAIYNETPVAPEGIHQDGFEHIAMASINRHNIVGGEVMLYDDNRSMPFFRRVLADSETVLLADNKLWHYFAPITAVAPGEEGHLDLLILTARREHA
>CP023268.1|AVJ17327.1|1963326_1963575_-|CsbD-family-protein
MFGKAEDKAKEVAGAAQEAFGEATGSPEHEIKGAARKYASQASYAVRDGADVVRHRVESNPLAGVAVAAAVGVVFGYLLGRK
>CP023268.1|AVJ17328.1|1963983_1964598_-|hypothetical-protein
MSQVIYRIEGSIIFSPEDTGLYRHNQADSIVAISSAAARLFTLLIKNKGHIVERETILEKVWDEYGLQASNNNLNQCLSILRRIIKNMGIDKNIIETIPKVGLRISHVIQIEEINLHPPVPGDPPAPDKRSRKKIKKKLFYSALLVGLLLMFSLFFNIFHLYNSYQSRPASLSLLNSTRGQAALCAVPPAETPRLSTVSLRTPH
>CP023268.1|AVJ17329.1|1964917_1965343_+|universal-stress-protein-UspA
MAYQHIVVATDLGENATQLLQKGAELASALRAKLSLIYIDIHHTGYYAELGIGAYNYTDQKFSERAASILESFRNQTPHPIAEVIIGRGELSEELNNAAQAKGFDLIIFGHHHDLWSRLFSATRQAINTLQIDVLVIPIDN
>CP023268.1|AVJ17330.1|1965621_1966377_+|3-oxoacyl-ACP-reductase
MRFDNKVVIITGAGNGMGEAAARRFAAEGATVVLADWAIDAVDAVAASLPAGKAHAVHIDVSDAEAVETMMNEIAARFGHIDVLLNNAGVHVAGSVLETSVADWRRIAGVDIDGVVFCSKFALPYLLKSKGCIVNTASVSGLGGDWGAAYYCAAKGAVVNLTRAMALDHGGEGVRVNAVCPSLVKTNMTNGWPQEIRDKFNERIALGRAAEPEEVAAVMAFLASEDASFINGANIPVDGGATASDGQPKIV
>CP023268.1|AVJ17331.1|1966414_1967695_-|gamma-glutamylputrescine-oxidoreductase
MTEHVKSYYAASANPHQPYPQLNESIECDVCIVGGGYTGLSSALFLVEAGYDVVVLESARIGFGASGRNGGQLVNSYSRDIDVIEQRYGADSARLLGSMMFEGAEIIRSRIKRYAIECDYRPGGIFAALNNKQYHMLIEQKGHWERYGNTQLELLDADRIRQEVASDRYVGALLDHSGGHIHPLNLALGEAEAIRLQGGRIFEQSAVTNIRHGDPALVSTAHGQVSARYVIVAGNAYLGDKLEPRLAKRSMPCGTQVVTTEPLAPEVAQSLIPQNYCVEDCNYLLDYYRITADHRLLYGGGVVYGARDPDDIDNLIRPKLLKTFPQLKGVRIDYRWTGNFLLTLSRMPQFGRLENNVYYMQGYSGHGVTCTHLAGKLIAELLRGDAERFDAFAKLPHLPFFGGRNLQIPFTAIGAAYYTLRDRIGV
>CP023268.1|AVJ17332.1|1967706_1969197_-|aldehyde-dehydrogenase-PuuC
MDFHHLQYWQQRAQALTIENRLFINGRYQPAAEGGTFTVEDPAGQRELTQAARAGSADVGLAVSAARAAFERGDWSRAAPSRRKAVLLALAEQIEQHAETLALLETLDTGKPIRHSLRDDIPGAARCLRWYAEAIDKVYGEIAPTGADALALIEREPVGVVGAITPWNFPLLLACWKLGPALATGNSVVLKPSEKSPLSAIYLGQLAQQAGLPDGVLNIISGFGHDAGKALALHPDVDALTFTGSTLVAKQLMVYAGESNMKRVWLEAGGKSANIIFADCPDIDKAARAAAAGIFYNQGQVCIAGTRLLVEESIQQPFLQALHKHAAAFTPGNPLDPDTQMGTLIDSGHSAKVADFIKQGLDQGATLFLDGRGSGPHDAYLGPTVLTQVDNTMQVAREEIFGPVLAVTPFNGEQQAIELANDSDYGLGAALWTRDLSRAHRLARQLRAGSVFINNYNDGDMTVPFGGYKQSGNGRDKSLHALDKFTELKTTWISLE

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Crispr_ID: CP023268_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023268_4

2799917-2799999

Orphan

I-F

Consensus_repeat	Method
AGGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023268_4

>merge|CP023268|4|2799917-2799999|CRISPRCasFinder
AGGCTGCCTGTACGGCAGTGAACAGGGGCGATGATGGTATGAGGATCAGAACAGATTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP023268|4|4|2799917-2799999|CRISPRCasFinder
AGGCTGCCTGTACGGCAGTGAAC	AGGGGCGATGATGGTATGAGGATCAGAACAGATTTCT
AAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP023268.1\|AVJ18070.1\|2807999_2808494_+\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ18067.1\|2803820_2805524_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
CP023268.1\|AVJ18060.1\|2795107_2795776_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
CP023268.1\|AVJ18059.1\|2794455_2795004_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP023268.1\|AVJ18071.1\|2809024_2809366_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371203
CP023268.1\|AVJ18066.1\|2802691_2803777_+\|monodechloroaminopyrrolnitrin-synthase-PrnB	unknown	unknown	gnl\|CDD\|255115
CP023268.1\|AVJ18069.1\|2806854_2808003_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|372235
CP023268.1\|AVJ18058.1\|2793783_2794206_-\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ18056.1\|2792148_2792724_+\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ18061.1\|2795775_2796096_+\|branched-chain-amino-acid-transport	unknown	unknown	unknown
CP023268.1\|AVJ18073.1\|2810319_2810703_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182365
CP023268.1\|AVJ18062.1\|2796257_2797391_+\|class-C-beta-lactamase	unknown	unknown	gnl\|CDD\|236894
CP023268.1\|AVJ18074.1\|2811127_2811649_-\|ferritin	unknown	unknown	gnl\|CDD\|224445
CP023268.1\|AVJ18068.1\|2805548_2806640_+\|2Fe-2S-ferredoxin	unknown	unknown	gnl\|CDD\|239611
CP023268.1\|AVJ18064.1\|2799521_2799896_+\|lyase	unknown	unknown	gnl\|CDD\|319923
CP023268.1\|AVJ20108.1\|2797721_2798750_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
CP023268.1\|AVJ18057.1\|2792874_2793714_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP023268.1\|AVJ18063.1\|2798824_2799346_-\|hypothetical-protein	unknown	unknown	unknown
CP023268.1\|AVJ18065.1\|2801093_2802692_+\|tryptophan-halogenase	unknown	unknown	gnl\|CDD\|368139
CP023268.1\|AVJ18072.1\|2809434_2810316_-\|copper-resistance-protein-CopD	unknown	unknown	gnl\|CDD\|224195

Protein	Function_ID	Function_description	E-value
CP023268.1\|AVJ18069.1\|2806854_2808003_+\|HNH-endonuclease	gnl\|CDD\|372235	pfam12639, Colicin-DNase, DNase/tRNase domain of colicin-like bacteriocin. Colicin-like bacteriocins are complex structures with an N-terminal beta-barrel translocation domain (pfam09000), a long double-alpha-helical receptor-binding domain (pfam11570) and this C-terminal RNAse/DNase domain with endonuclease activity. Their competitor bacteriocidal action is by a process that involves binding to a surface receptor, entering the cell, and, finally, killing it. The lethal action of colicin E3 is a specific cleavage in the ribosomal decoding A site. The crystal structure of colicin E3 reveals a Y-shaped molecule with the receptor binding domain forming a 100 Angstrom long stalk and the two globular heads of the translocation domain and this catalytic domain comprising the two arms.	0.00053285
CP023268.1\|AVJ18060.1\|2795107_2795776_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	5.9286e-39
CP023268.1\|AVJ18059.1\|2794455_2795004_-\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.51407e-12
CP023268.1\|AVJ18071.1\|2809024_2809366_-\|hypothetical-protein	gnl\|CDD\|371203	pfam10709, DUF2511, Protein of unknown function (DUF2511). This family is conserved in bacteria. The function is not known.	1.47682e-38
CP023268.1\|AVJ18057.1\|2792874_2793714_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.97102e-17
CP023268.1\|AVJ18073.1\|2810319_2810703_-\|hypothetical-protein	gnl\|CDD\|182365	PRK10301, PRK10301, CopC domain-containing protein YobA.	1.4669e-43
CP023268.1\|AVJ18062.1\|2796257_2797391_+\|class-C-beta-lactamase	gnl\|CDD\|236894	PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase; Provisional.	0
CP023268.1\|AVJ18074.1\|2811127_2811649_-\|ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	1.43206e-81
CP023268.1\|AVJ18068.1\|2805548_2806640_+\|2Fe-2S-ferredoxin	gnl\|CDD\|239611	cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.	5.48218e-85
CP023268.1\|AVJ18064.1\|2799521_2799896_+\|lyase	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.19925e-39
CP023268.1\|AVJ20108.1\|2797721_2798750_+\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	4.9565e-11
CP023268.1\|AVJ18067.1\|2803820_2805524_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	9.01008e-19
CP023268.1\|AVJ18066.1\|2802691_2803777_+\|monodechloroaminopyrrolnitrin-synthase-PrnB	gnl\|CDD\|255115	pfam08933, DUF1864, Domain of unknown function (DUF1864). This domain has no known function. It is found in various hypothetical and conserved domain proteins.	3.82572e-126
CP023268.1\|AVJ18065.1\|2801093_2802692_+\|tryptophan-halogenase	gnl\|CDD\|368139	pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.	0
CP023268.1\|AVJ18072.1\|2809434_2810316_-\|copper-resistance-protein-CopD	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	4.89826e-52

>CP023268.1|AVJ18064.1|2799521_2799896_+|lyase
MFDHVKFGVSDYAASKTFFLNALAPLGVSVVAEGTPDYGVELSSPSNASLCLYQTAERPAHLHLAFVADSRRQVDDFYRAALAAGGTDNGAPGLRPNYHTNYYAAFVIAPDGHNIEMVCHRPDE
>CP023268.1|AVJ18063.1|2798824_2799346_-|hypothetical-protein
MFDKFENEDDFLSSLPKYLRDPIVKFHTAIKETIDSLSPESSELFQSTLKQMKSLSHEVGEFIHIRASHLSDLFSKPLTFFKDTLEGAKNLADKVGNSFHEIKEKYDQLTDKPSHIFEGIKHWFDGLLGDKQEKTSAAEFNLYLDGHDHAAPAHSAIDVNGIATSHADMHSVM
>CP023268.1|AVJ20108.1|2797721_2798750_+|fatty-acid-desaturase
MVDEAPPLSLPVRVKYIRQQIIAAGNDVKLRFPVLKYQNAIGLGILLFSIFSLVAVSTFYIHQQISWWLCLLLNALCLSLAHEIEHDLIHNLYFKKNRFMYHLMMTLVWIVRPSSANPWARKTLHLKHHQYSGSEQDLEERALSNGTRWGVLRLLMTADLMVALAVVAWQDKGKGDLRGVLLTGLKAFFPVAFLTWGLWYLFLIVHGIDFAATLSGMPITWSGAAQAPIGYLDMLVVVLIGPNILWSFCLHFVSSNMHYHGDIEHNNILQQTQVMNPWWLWPLQLFCFNFGSTHSIHHFVVNEPFYIRQLTAAKAHRVMREMGVRFNDYGSFGRANRWGAAE
>CP023268.1|AVJ18062.1|2796257_2797391_+|class-C-beta-lactamase
MLKKTLPLLPLCLALLPTFGHAVDKAEIDKVVQPLMEKYAVPGMTIAVSVDGKPQFYNYGVASKQSKLPVTQNTLFEIGSLSKTFTATLAAYAQHAGKLDWAQPASHYLPQLQGSAFDRVSLLNLATHTSGLPLFVPDEITNEQQLMDYYRQWQPSHPIGSYRVYSNLGIGLLGMITAKSLAQPFTIAMEQRLLPALGMTHSYVNVPPAAQKDYAQGYNKEDQPVRVTPGPLDAESYGLKSSSSDLIRYLNANMGLVKVAPDWRQALDGVHRGYYHASEFTQDLMWESYPYPVTLDTLLAGNDAKVIMNGVPAQAITPPQAPQQQAWYNKTGSTNGFATYAVFIPAQKTAVVMLANKNFPNDERVKAVYQIVQSLTR
>CP023268.1|AVJ18061.1|2795775_2796096_+|branched-chain-amino-acid-transport
MSLHSIVTGMIILAAGTYLLRLSGALLGQKMAFSTTTRDLLADAATTLLLAVAVIATLFEDQHFAGAARVVGVLTGLLLTWRKVPLIIVLVAAAAVTALLRWLGLP
>CP023268.1|AVJ18060.1|2795107_2795776_+|branched-chain-amino-acid-ABC-transporter-permease
MKFNRLSVLNSEVVKGIVLVCLADGIVGVSYGSLATGYGFPLWVPLALSVLVLAGASEFLFIGIVAGGGSPFAAATAGLLVNARHMPFGMAVKDLIGHGPARFLGCHIMNDESVVFGVSQPTLPARKAAYWLCGLGIALCWPLGVIVGGSIGNLIPDVHSIGLDAVFPTILLALIVSALKNRRTLLSAVSGTAFALAAVPWAPIGMPVLFALLGLLIRKRTH
>CP023268.1|AVJ18059.1|2794455_2795004_-|transcriptional-regulator
MTQPITIIADALVRERQRAGLSLAEVARRAGIAKSTLSQLEAANGNPSLETLWSLCVALDIPFARLMEPQQNSTQVIRRGEGPTVVAEMADYTAALLATCPPGARRDIYLLTAQPGADRISQPHSPGSVEHIIITQGRALVGLIDTPVELYAGDYICYPGDRAHIFKALEPDTLAVLVSEQN
>CP023268.1|AVJ18058.1|2793783_2794206_-|hypothetical-protein
MKRSLPLLTAVLMGAASAAAGATFDLQYHPPEAADRKVGNAQQPLKPVPRHQIWNAEKLAQDNQRAESEEQAQALADYQRQRQRAHILGEQRERIRRHPNSTRPAARDYLVNCMPPGDRGSLKWDDEGRDPSLCGRISWD
>CP023268.1|AVJ18057.1|2792874_2793714_+|alpha/beta-hydrolase
MKPETEIVRVGDWQVYVERYMYPGVTDSVICVNGSFSTTLAFRSCVRNFKNRVNVILFDLPFLGQSRQHNDLTKPLAKSDEVFILQSLINHYEPSYLLSISWGGLAALMALSSRPRSIRKAVVASFSTKVNDAMNYYVSQGKKLLDEGKGDEAAMLLNTEVGKYLPNLLKQVNYEHLRQFDESAQKQVRYHVAQITEFNQADYIDTFRQIDTPILFINGEQDEYTTAQDIKELSNYINNCEFITVPQAGHFIYMESRFAADYFNDVMNGFLLVEEAMAS
>CP023268.1|AVJ18056.1|2792148_2792724_+|hypothetical-protein
MADNIVKDVADTASDLVGSVTGTAGDLVGGVSGTVGDLVDSTVDNATGAIGGVVDAVTSGSGGLWGVISGVAGSVGGLLSGVAGSLLGLVGDVAGTVGDLAGNVTDFVGGVLDKISDLGGDVGKVVDHVTDGVSGVVDHVTDGVSGATDATDALISALEQTGGDVAAAATPAAVEVNGVTDAADAAVHHAA
>CP023268.1|AVJ18065.1|2801093_2802692_+|tryptophan-halogenase
MSKPIKNIVIVGGGTAGWMSASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAGIKFVNWRESPDRSHNDYFYHLFGNVPNCDGVPLTHYWLRKREQGFQQSMAYACYPQPGALDGNLAPCLHDGSRQMSHAWHFDAHLVADFLKRWAVDRGVNRVVDEVVEVNLNDHGFISSLSTKEGRKLEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCDSAVATAVPNDDAQAGVEPYTSSIAMNAGWTWKIPMLGRFGSGYVFSSKFTSRDRATADFLKLWGLSDNQPLNQISFRVGRNKRAWVNNCVAIGLASCFLEPLESTGIYFIYAALYQLVKHFPDTAFDPRLADAFNAEIVYMFDDCRDFVQAHYFTSSREDTAFWLANRHELRLSDAIQEKIERYKAGLPLTTTSFDDDTYYDTFDFEFKNFWLNGNYYCIFAGLDMLPDRSLPLLQLRPESIDKAEAMFASIQHEAERLRTSLPTNYDYLRSLQKGYAEQSRPASPEIL
>CP023268.1|AVJ18066.1|2802691_2803777_+|monodechloroaminopyrrolnitrin-synthase-PrnB
MERALDRAGAFAATHAAVAACDPLQARPQVLQLPGLNRNQDVPGIVGLLREFLPVGGVPAGWGFTEAAAAMRDIGFFLGSLKRHGQEPADAVPGLEPLLLDLARITEMPPRETLLHVTVWNPSAADAQRSYSGLDDETHLLESVRMSMAALEAAIAVTVELTEVPLRSPAFAQGCDELAAYLQKMVESIVYAYRFISPQVFYDELRPFYEPIQIGGQSYLGPGAVEMPLFVLEHVLWGSQSDHPVYLEFKETYLPYVLPGYRAVYARFAGKPALVDRAIAEAQAAGAQDESVRAGLTALNRLFVILLRFRAPHHQLAERVYEAGRSGPSVGSGGYAPSMLGDLLTLTLAARSRLRAALNPS
>CP023268.1|AVJ18067.1|2803820_2805524_+|FAD-dependent-oxidoreductase
MTQKSPANGRDNHHFDVIIIGSGMSGTQMGAILAKQQFRVLIVEASSHPRFTIGESSIPETSLMNRIIADRYGIPELDHITSFYSTQRYVASSTGIKRNFGFVFHKPGQEHDPKEFTQCVIPELPWGPESHYYRQDVDAYLLQAAIKYGCTVLQNTKVTEFHADKDGVAITTAQNERFTGRYMIDCGGPRAPLAIKFNLREEPCRFKTHSRSLYTHMIGVKPFDDIFKVKGQRWRWHEGTLHHMFKGGWLWVIPFNNHPRSTNNLVSVGLQLDPRVYPKTDISAQQEFDEFLARFPSIGAQFRDAVPVRDWIRTDRLQFSSSSCVGDRYCLMLHANGFIDPLFSRGLENTAVTIHALAARLIKALNDDDFSPERFEYIERLQQKLLDHNDDFVSCCYTAFSDFRLWDAFHRLWAVGTILGQFRLVQAHARFRASRNEGDLDHLDNDPPYLGYLCADMEGYYQLFNDAKAEIEAVSAGHKPPEEAAARIHALIDERDFAKHMFGFGYCITGEKPQLNNSKHSLLPAMKLMYWTQTSAPAEVKKYFDYNPMFALLKAYITTRIGLMQKK
>CP023268.1|AVJ18068.1|2805548_2806640_+|2Fe-2S-ferredoxin
MNDIQLNQASVKAHPPKAYDATTSVAASWYVAIRSSDLKDKPKALTLFGRPCVAWRGATGQAVVMDRHCSHLGANLADGQVKDGCIQCPFHHWQYDEQGQCVHIPGHSQTVRSLEPVPRSVRQPTLVTAERYGYVWVWYGSPEPQHPLPDIAAADVDNDDFMHLHFAFETTTAVLRIVENFYDAQHAAPVHELPISAFELRLFDDWRQWPEVGPLAQSGAWFGAGIDFTVDRYFGPFGMLARALGLNMSQMNLHFDGYPGGCVMTVSLDGDFKYKLLQCVTPVSDDKNIMHMLISIKKVGGALRRATDYMLFGLQTRQAAQYDVKIWNGMKPDGGGAYSKYDKLVLKYRAFYRGWADRAVSER
>CP023268.1|AVJ18069.1|2806854_2808003_+|HNH-endonuclease
MLLIVKRLPDNLYHLFYGELVPELYDRIVTPSRAWDKICRRYTFDHKSAIGFSNFGSDIKERVAWDSSPVDEQGYYAKSIKHNIEHGDVVYIDTKSLWNPLDFAFYINHQGFLVSNSGYSAFKLDGANRIIHYYEQAVASRRGQSRPRATVRPVPQQPQTAKKALNTLNSKAVGRLLAAGGIYNQNVEGFAETAKQLGGEAADGFNQVANPQSIGSLIALSSIVAVAKLPSGGVANVKSLEELQQFLGTYKGERKLLDNIDVIKMNYVRRSREEAKLLRREFDGKVRKNFLKSISDNPEVTRRFNSDDLELIAKGRVPEDWSVHHKLPLDDSGTNDFNKLALINERYEHAVFTTTQSRITRGMSSGEPREVLWPVPKGVIYP
>CP023268.1|AVJ18070.1|2807999_2808494_+|hypothetical-protein
MRFKMKNMNDIVEEIQKLAELLEYPVYPGVTANLPYYDFGRKIGSQQHDFWAQYGQFIRLMDGFQIDGIRIYGLENHGKSKYNRLIEYNDELTLISQKAPNAYVESYDHLIVIGNNGTDTFVYDVRTQKWDMRDRIAIDESYESHDTFESFLSSVVKTIQVNNA
>CP023268.1|AVJ18071.1|2809024_2809366_-|hypothetical-protein
MKRALLALALLAGAGGALAAEGLENVTKLEFGKQWAFTKEEVTLQCRKDGALFVLNNSTLMQYPLNDIAQAQVAAGQQRAQPLATILLDDANHSGEKMSVEPFRARAQTLCAK
>CP023268.1|AVJ18072.1|2809434_2810316_-|copper-resistance-protein-CopD
MTLATLFVLCRFVHFTAVMLMFGIGLFTALLSPQRLSALLSRDLRPWLAGSTLAAAVSAVALLAVQAGLMGDGWQDTYQWDIWLAVLGTTFGEVWRWHLALSLCSLAALWLPLRLRAAASALLGGLLLISMAFIGHAAMHSGLFGTLHRLSHALHLLAAGYWFGSLLPLLVCLRYLHLPQWRAEAVTTLIRFSRWGHLAVAVVLITGVLNGLMIVGGWPLDISSPYQRLLLIKSALVLLMVGVALTNRYAIVPALHSVPNLAQRGVILACWSELALGGAVLLLVSLFATYAPT
>CP023268.1|AVJ18073.1|2810319_2810703_-|hypothetical-protein
MIGKIRSSSRLLATLFALFVGLSSQQVLAHAHLKLQTPAADATVSPAPQALTLSFSEGIEPGFSKVKLIGPDNKAVKIGKLQLDAKDNAKASIPIPEVLPAGKYQVDWHVVSVDGHKTKGQYSFTVK
>CP023268.1|AVJ18074.1|2811127_2811649_-|ferritin
MLTQEMTKQLNEQLNLEFYSANLYLQMSAWCADKGFEGAAAFLKEHSQEEMQHMQRLFDYLSDTGALPVLGSIAAPPVEFESLADVFQQTYEHEQLITRQINELAHVAMTTHDYSTFNFLQWYVAEQHEEEKLFKSVLDKLALVGTSGKALFFIDKDLKKMGAAGGEDSNGQL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023268_3	3.2\|1959358\|32\|CP023268\|CRISPRCasFinder	1959358-1959389	32	MH837543	Lactobacillus phage LR2, complete genome	39158-39189	6	0.812
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	NZ_CP035549	Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18 plasmid pYU07-18_89, complete sequence	77643-77674	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	NZ_CP031917	Escherichia coli O45:H2 strain FWSEC0003 plasmid unnamed11, complete sequence	83056-83087	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	NZ_CP042620	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence	58660-58691	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	NZ_AP018804	Escherichia coli strain E2863 plasmid pE2863-2, complete sequence	23786-23817	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	NZ_CP011430	Salmonella enterica subsp. enterica serovar Typhimurium strain YU39 isolate YUHS 05-78 plasmid pYU39_89, complete sequence	12586-12617	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	NZ_CP032497	Salmonella enterica subsp. enterica serovar Typhimurium strain SO21 plasmid pSO21_75, complete sequence	12586-12617	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	NZ_MN101851	Escherichia coli strain 13ZX28 plasmid p13ZX28-90, complete sequence	84056-84087	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	NZ_MN101855	Escherichia coli strain 13ZX36 plasmid p13ZX36-90, complete sequence	84942-84973	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	MF356679	Escherichia phage D6, complete genome	77834-77865	7	0.781
CP023268_3	3.1\|1959298\|32\|CP023268\|CRISPRCasFinder	1959298-1959329	32	MN013086	Klebsiella phage vB_Kpn_Chronis, complete genome	35876-35907	9	0.719

1. spacer 3.2|1959358|32|CP023268|CRISPRCasFinder matches to MH837543 (Lactobacillus phage LR2, complete genome) position: , mismatch: 6, identity: 0.812

aatgtttgggagtcgataaaaaacggctgggc-	CRISPR spacer
aatgtttggaagtcaataaaaaa-ggttggaaa	Protospacer
*********.****.******** **.***.

2. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to NZ_CP035549 (Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18 plasmid pYU07-18_89, complete sequence) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

3. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to NZ_CP031917 (Escherichia coli O45:H2 strain FWSEC0003 plasmid unnamed11, complete sequence) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

4. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to NZ_CP042620 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

5. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to NZ_AP018804 (Escherichia coli strain E2863 plasmid pE2863-2, complete sequence) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

6. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to NZ_CP011430 (Salmonella enterica subsp. enterica serovar Typhimurium strain YU39 isolate YUHS 05-78 plasmid pYU39_89, complete sequence) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

7. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to NZ_CP032497 (Salmonella enterica subsp. enterica serovar Typhimurium strain SO21 plasmid pSO21_75, complete sequence) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

8. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to NZ_MN101851 (Escherichia coli strain 13ZX28 plasmid p13ZX28-90, complete sequence) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

9. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to NZ_MN101855 (Escherichia coli strain 13ZX36 plasmid p13ZX36-90, complete sequence) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

10. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to MF356679 (Escherichia phage D6, complete genome) position: , mismatch: 7, identity: 0.781

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
gcattctccgccgccagcgcagcacacgcttt	Protospacer
*******************.* ***.* *  .

11. spacer 3.1|1959298|32|CP023268|CRISPRCasFinder matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 9, identity: 0.719

gcattctccgccgccagcgtatcacgctcagc	CRISPR spacer
acattctccgcagccagcttatcaatttcgat	Protospacer
.********** ****** *****  .**...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

827995 : 868127

Erwinia_phage(27.59%)

tRNA,plate,tail,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ16324.1\|827995_829042_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AVJ16325.1\|829022_829784_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.1e-55	47.6
AVJ16326.1\|829777_830404_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-32	46.7
AVJ16327.1\|830705_831725_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.0e-06	37.5
AVJ16328.1\|831779_832778_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-32	37.6
AVJ16329.1\|832851_835404_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.1e-27	19.8
AVJ16330.1\|835727_836819_+	murein transglycosylase B	NA	NA	NA	NA
AVJ16331.1\|836857_838261_-	MFS transporter	NA	NA	NA	NA
AVJ16332.1\|838498_838987_+	hypothetical protein	B5TK85	Pseudomonas_phage	5.8e-28	48.4
AVJ16333.1\|839099_840152_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.1e-111	61.2
AVJ16334.1\|840213_840744_+	recombination regulator RecX	NA	NA	NA	NA
AVJ16335.1\|840878_843506_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	6.0e-79	37.1
AVJ16336.1\|843758_843944_+	carbon storage regulator	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
AVJ16337.1\|844902_845469_+	fructose-1-phosphate/6-phosphogluconate phosphatase	G3MA51	Bacillus_virus	3.5e-08	26.3
AVJ16338.1\|845465_845894_+	hypothetical protein	NA	NA	NA	NA
AVJ16339.1\|846044_847607_+	glutamate--cysteine ligase	NA	NA	NA	NA
AVJ16340.1\|847774_848290_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
AVJ19992.1\|848362_849607_-	magnesium/cobalt efflux protein	NA	NA	NA	NA
AVJ16341.1\|849711_850503_-	hypothetical protein	NA	NA	NA	NA
AVJ16342.1\|850670_852032_+	signal recognition particle protein	NA	NA	NA	NA
AVJ16343.1\|852247_852496_+	30S ribosomal protein S16	NA	NA	NA	NA
AVJ16344.1\|852514_853063_+	ribosome maturation factor RimM	NA	NA	NA	NA
AVJ16345.1\|853115_853883_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AVJ16346.1\|853926_854283_+	50S ribosomal protein L19	NA	NA	NA	NA
AVJ19993.1\|854366_854693_-	hypothetical protein	NA	NA	NA	NA
AVJ16347.1\|855117_855540_-\|tail	phage tail protein	U5P083	Shigella_phage	2.0e-16	38.7
AVJ16348.1\|855541_857287_-	hypothetical protein	A0A0M3ULH6	Salmonella_phage	7.6e-62	52.2
AVJ16349.1\|857298_857865_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	2.8e-74	75.3
AVJ16350.1\|857868_858102_-	late control protein B	F1BUT0	Erwinia_phage	3.7e-17	75.5
AVJ16351.1\|858178_859330_-	hypothetical protein	A0A0M5M5V5	Salmonella_phage	1.0e-94	46.2
AVJ16352.1\|859326_859809_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.1e-42	53.6
AVJ16353.1\|859821_861876_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	6.5e-28	30.8
AVJ16354.1\|861868_862003_-\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	3.3e-10	70.5
AVJ16355.1\|862023_862311_-\|tail	phage tail protein	A0A0F7LDQ8	Escherichia_phage	4.3e-23	56.7
AVJ16356.1\|862380_862890_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	3.3e-66	69.5
AVJ16357.1\|862903_864073_-\|tail	phage tail protein	F1BUU3	Erwinia_phage	3.1e-184	79.6
AVJ16358.1\|864236_865145_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	6.4e-121	75.5
AVJ16359.1\|865149_865500_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	8.9e-39	68.1
AVJ16360.1\|865496_866132_-\|plate	baseplate assembly protein	A0A0F7LDY9	Escherichia_phage	6.8e-61	56.1
AVJ16361.1\|866220_866685_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	6.1e-19	41.9
AVJ16362.1\|866659_866893_-\|holin	holin	F1BUQ0	Erwinia_phage	1.5e-21	61.8
AVJ16363.1\|866795_867209_-	LysB family transcriptional regulator	NA	NA	NA	NA
AVJ16364.1\|867205_867718_-	glycoside hydrolase	A0A218M4K3	Erwinia_phage	1.1e-58	63.9
AVJ16365.1\|867701_867920_-	hypothetical protein	F1BUQ4	Erwinia_phage	4.6e-09	48.3
AVJ16366.1\|867923_868127_-\|tail	phage tail protein	F1BUQ5	Erwinia_phage	2.0e-19	64.2

DBSCAN-SWA_2

1819184 : 1883124

Salmonella_phage(29.55%)

lysis,integrase,tail,transposase,terminase,portal,capsid,head

attL 1819026:1819085|attR 1860257:1860381

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1819026:1819085	attL	NA	NA	NA	NA
AVJ17178.1\|1819184_1820195_-\|integrase	integrase	K7PLZ2	Enterobacterial_phage	1.2e-128	65.8
AVJ20036.1\|1820194_1820431_-	hypothetical protein	NA	NA	NA	NA
AVJ20037.1\|1820477_1820822_-	hypothetical protein	H9C172	Pectobacterium_phage	2.6e-30	58.2
AVJ17179.1\|1821003_1821396_-	hypothetical protein	NA	NA	NA	NA
AVJ17180.1\|1821395_1821701_-	hypothetical protein	NA	NA	NA	NA
AVJ17181.1\|1821700_1821907_-	hypothetical protein	A0A220NQV0	Salmonella_phage	3.2e-12	54.1
AVJ17182.1\|1821903_1822965_-	hypothetical protein	T1SBJ4	Salmonella_phage	1.1e-151	75.7
AVJ17183.1\|1822961_1823600_-	exodeoxyribonuclease VIII	NA	NA	NA	NA
AVJ17184.1\|1823599_1824130_-	hypothetical protein	A5LH62	Enterobacteria_phage	3.2e-56	62.4
AVJ17185.1\|1824604_1824892_-	DNA-binding protein	NA	NA	NA	NA
AVJ17186.1\|1825756_1826407_-	XRE family transcriptional regulator	G9L676	Escherichia_phage	1.8e-61	58.8
AVJ17187.1\|1826506_1826704_+	hypothetical protein	K7PHB1	Enterobacterial_phage	8.9e-20	75.4
AVJ17188.1\|1826732_1827257_+	DNA-binding protein	Q8SBF4	Shigella_phage	1.5e-13	30.5
AVJ17189.1\|1827270_1827456_+	hypothetical protein	NA	NA	NA	NA
AVJ20038.1\|1827452_1828361_+	GntR family transcriptional regulator	U5P0A0	Shigella_phage	9.5e-32	62.5
AVJ17190.1\|1828317_1829079_+	DNA replication protein DnaC	A0A1W6JP39	Morganella_phage	2.8e-53	44.1
AVJ17191.1\|1829075_1829423_+	hypothetical protein	NA	NA	NA	NA
AVJ17192.1\|1829419_1829989_+	S-adenosylmethionine-binding protein	Q858E6	Salmonella_phage	1.1e-81	76.2
AVJ17193.1\|1829985_1830357_+	hypothetical protein	A0A1C9IIA0	Salmonella_phage	2.5e-39	61.7
AVJ17194.1\|1830353_1831340_+	hypothetical protein	A0A0P0ZD76	Stx2-converting_phage	2.5e-86	48.2
AVJ17195.1\|1831391_1831790_+	antitermination protein Q	U5P0A5	Shigella_phage	1.4e-32	60.3
AVJ17196.1\|1831924_1832668_+	hypothetical protein	NA	NA	NA	NA
AVJ17197.1\|1832760_1833120_-	transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	7.6e-09	42.3
AVJ17198.1\|1833185_1833446_-	hypothetical protein	A0A1S5NR91	Burkholderia_phage	1.2e-08	39.5
AVJ17199.1\|1833614_1833863_+\|lysis	lysis protein	A0A127KNH9	Pseudomonas_phage	1.1e-06	37.7
AVJ17200.1\|1833865_1834345_+	lysozyme	A0A2I6TCA1	Escherichia_phage	2.9e-64	72.7
AVJ20039.1\|1834362_1834719_+	hypothetical protein	NA	NA	NA	NA
AVJ17201.1\|1834872_1835157_+	hypothetical protein	G8C7W3	Escherichia_phage	1.7e-27	68.1
AVJ17202.1\|1835320_1835584_+	hypothetical protein	NA	NA	NA	NA
AVJ17203.1\|1835665_1836220_+	hypothetical protein	NA	NA	NA	NA
AVJ17204.1\|1836405_1836615_+	hypothetical protein	NA	NA	NA	NA
AVJ17205.1\|1836624_1838085_+	glycosyltransferase	K7PKP3	Enterobacterial_phage	4.6e-230	77.0
AVJ17206.1\|1838066_1838657_+	hypothetical protein	S4TR53	Salmonella_phage	5.1e-71	64.3
AVJ17207.1\|1838649_1839018_+	HNH endonuclease	S4TTG9	Salmonella_phage	2.0e-49	76.7
AVJ17208.1\|1839189_1839645_+\|terminase	terminase	S4TNN3	Salmonella_phage	2.0e-38	59.1
AVJ17209.1\|1839647_1841306_+\|terminase	terminase	Q3HQS7	Burkholderia_phage	2.9e-236	71.9
AVJ17210.1\|1841364_1843308_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	87.2
AVJ17211.1\|1843511_1844864_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	5.3e-188	72.0
AVJ17212.1\|1844856_1845750_+\|portal	phage portal protein	S4TNN1	Salmonella_phage	1.1e-69	44.8
AVJ17213.1\|1845753_1846080_+	DNA-packaging protein	S4TSQ3	Salmonella_phage	4.4e-24	54.6
AVJ17214.1\|1846147_1846357_+	hypothetical protein	K7PJU7	Enterobacteria_phage	1.7e-08	55.1
AVJ17215.1\|1846362_1846713_+\|head,tail	head-tail adaptor protein	A0A286S2A2	Klebsiella_phage	3.8e-29	56.0
AVJ20040.1\|1846705_1847191_+	hypothetical protein	A0A0U3TGT7	Pseudomonas_phage	1.8e-50	61.3
AVJ17216.1\|1847187_1847553_+	hypothetical protein	K7PHI9	Enterobacteria_phage	4.9e-48	71.9
AVJ17217.1\|1847612_1848110_+\|tail	phage tail protein	A0A286S1Q8	Klebsiella_phage	1.4e-69	78.9
AVJ17218.1\|1848158_1848539_+\|tail	phage tail protein	K7PJU9	Enterobacteria_phage	1.5e-47	75.6
AVJ20041.1\|1848586_1848805_+\|tail	phage tail protein	A0A286S1P2	Klebsiella_phage	2.3e-21	63.4
AVJ20042.1\|1848897_1849254_+	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.4e-44	77.6
AVJ17219.1\|1849311_1851738_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	5.7e-140	42.2
AVJ17220.1\|1851737_1852208_+	hypothetical protein	A0A286S298	Klebsiella_phage	3.6e-59	61.3
AVJ17221.1\|1852204_1852687_+	ArsR family transcriptional regulator	A0A286S2B1	Klebsiella_phage	5.5e-55	63.8
AVJ17222.1\|1852697_1853078_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.2e-54	77.0
AVJ17223.1\|1853074_1856158_+	kinase	A0A286S259	Klebsiella_phage	7.6e-283	50.1
AVJ17224.1\|1856216_1858025_+	hypothetical protein	J7HXC9	Pseudomonas_phage	5.3e-10	60.0
AVJ17225.1\|1858028_1858739_+	hypothetical protein	NA	NA	NA	NA
AVJ17226.1\|1859239_1859473_+	hypothetical protein	NA	NA	NA	NA
AVJ17227.1\|1859814_1860078_-	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.3e-05	37.8
AVJ17228.1\|1860521_1860737_-	hypothetical protein	NA	NA	NA	NA
1860257:1860381	attR	NA	NA	NA	NA
AVJ17229.1\|1860834_1861023_-	hypothetical protein	NA	NA	NA	NA
AVJ17230.1\|1861354_1861603_-	hypothetical protein	NA	NA	NA	NA
AVJ17231.1\|1862058_1862322_-	hypothetical protein	NA	NA	NA	NA
AVJ17232.1\|1862470_1862695_-	hypothetical protein	NA	NA	NA	NA
AVJ20043.1\|1863074_1863839_+	nucleotidyltransferase	NA	NA	NA	NA
AVJ17233.1\|1864231_1865347_+	hypothetical protein	NA	NA	NA	NA
AVJ17234.1\|1865793_1866834_+	LacI family transcriptional regulator	NA	NA	NA	NA
AVJ20044.1\|1866871_1867843_-	porphobilinogen synthase	NA	NA	NA	NA
AVJ17235.1\|1868031_1868250_-	hypothetical protein	NA	NA	NA	NA
AVJ17236.1\|1868677_1868905_+	hypothetical protein	NA	NA	NA	NA
AVJ17237.1\|1869039_1870563_-	proline/glycine betaine transporter ProP	Q6JIH2	Burkholderia_virus	1.6e-55	31.7
AVJ17238.1\|1870924_1871539_+	hypothetical protein	NA	NA	NA	NA
AVJ17239.1\|1871900_1872200_+	hypothetical protein	NA	NA	NA	NA
AVJ17240.1\|1872323_1872827_+	hypothetical protein	NA	NA	NA	NA
AVJ17241.1\|1873491_1875213_-	potassium/proton antiporter	NA	NA	NA	NA
AVJ17242.1\|1875494_1875719_-	hypothetical protein	NA	NA	NA	NA
AVJ17243.1\|1876072_1877206_-	glucans biosynthesis protein MdoC	NA	NA	NA	NA
AVJ17244.1\|1877531_1879034_+	glucan biosynthesis protein G	NA	NA	NA	NA
AVJ17245.1\|1879026_1881588_+	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA
AVJ17246.1\|1881729_1881975_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA
AVJ17247.1\|1882083_1883124_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2051476 : 2059105

Tupanvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ17406.1\|2051476_2053405_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.8e-128	36.8
AVJ17407.1\|2053408_2053960_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.4e-16	33.1
AVJ17408.1\|2054058_2054256_+	50S ribosomal protein L35	NA	NA	NA	NA
AVJ17409.1\|2054299_2054656_+	50S ribosomal protein L20	NA	NA	NA	NA
AVJ17410.1\|2054745_2054928_-	hypothetical protein	NA	NA	NA	NA
AVJ17411.1\|2055034_2056018_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-34	38.9
AVJ17412.1\|2056032_2058420_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.4e-05	25.0
AVJ17413.1\|2058424_2058721_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.2e-13	40.0
AVJ17414.1\|2058895_2059105_+	hypothetical protein	S4TTC1	Salmonella_phage	2.0e-09	70.0

DBSCAN-SWA_4

2089132 : 2186664

Pectobacterium_phage(17.78%)

plate,lysis,tail,integrase,transposase,portal

attL 2078843:2078862|attR 2137552:2137571

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2078843:2078862	attL	NA	NA	NA	NA
AVJ17441.1\|2089132_2090215_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	2.4e-98	48.8
AVJ17442.1\|2090189_2090522_-	excisionase	NA	NA	NA	NA
AVJ17443.1\|2090487_2090688_-	hypothetical protein	H9C154	Pectobacterium_phage	1.6e-08	55.4
AVJ17444.1\|2090957_2091458_-	hypothetical protein	H9C156	Pectobacterium_phage	4.4e-55	67.5
AVJ17445.1\|2091454_2093602_-	hypothetical protein	H9C157	Pectobacterium_phage	2.4e-134	41.7
AVJ17446.1\|2093653_2093932_-	hypothetical protein	NA	NA	NA	NA
AVJ17447.1\|2093942_2094260_-	hypothetical protein	NA	NA	NA	NA
AVJ17448.1\|2094693_2095095_-	transcriptional regulator	I6PD69	Cronobacter_phage	2.1e-31	54.6
AVJ17449.1\|2095176_2095371_+	hypothetical protein	A0A1W6JP24	Morganella_phage	7.0e-09	42.9
AVJ20054.1\|2095432_2095882_+	hypothetical protein	H9C162	Pectobacterium_phage	1.4e-31	56.1
AVJ17450.1\|2095903_2096110_+	hypothetical protein	H9C163	Pectobacterium_phage	5.6e-17	60.9
AVJ17451.1\|2096112_2096832_+	replication protein	A0A1W6JP36	Morganella_phage	1.5e-27	66.3
AVJ17452.1\|2096828_2098202_+	replicative DNA helicase	Q76H51	Enterobacteria_phage	1.6e-115	49.3
AVJ17453.1\|2098245_2098728_+	hypothetical protein	H9C166	Pectobacterium_phage	9.8e-28	44.9
AVJ17454.1\|2098731_2098977_+	hypothetical protein	H9C167	Pectobacterium_phage	2.5e-11	48.1
AVJ17455.1\|2098973_2099186_+	hypothetical protein	K7PLX1	Enterobacteria_phage	4.3e-20	69.4
AVJ17456.1\|2099701_2100361_+	hypothetical protein	NA	NA	NA	NA
AVJ17457.1\|2100470_2100758_+	hypothetical protein	NA	NA	NA	NA
AVJ17458.1\|2100901_2101150_+	hypothetical protein	NA	NA	NA	NA
AVJ17459.1\|2101295_2101487_+	hypothetical protein	NA	NA	NA	NA
AVJ17460.1\|2101557_2102163_+	hypothetical protein	H9C173	Pectobacterium_phage	7.9e-75	67.9
AVJ17461.1\|2102162_2102369_+	hypothetical protein	H6WRY8	Salmonella_phage	1.4e-20	66.7
AVJ17462.1\|2102371_2102659_+	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	1.7e-32	68.8
AVJ20055.1\|2102658_2103024_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.6e-38	64.6
AVJ17463.1\|2103112_2103970_+	DNA methyltransferase	Q5GQR9	Synechococcus_phage	6.9e-08	24.1
AVJ17464.1\|2104000_2105437_-	hypothetical protein	NA	NA	NA	NA
AVJ20056.1\|2105840_2106089_+\|lysis	lysis protein	A0A127KNH9	Pseudomonas_phage	1.9e-06	37.7
AVJ17465.1\|2106091_2106586_+	lysozyme	M9P0E5	Enterobacteria_phage	9.0e-53	61.6
AVJ17466.1\|2106582_2106966_+	hypothetical protein	NA	NA	NA	NA
AVJ17467.1\|2107739_2108126_-	hypothetical protein	NA	NA	NA	NA
AVJ20057.1\|2108631_2109126_+	DUF1441 domain-containing protein	K7PJY2	Enterobacterial_phage	4.2e-50	64.6
AVJ17468.1\|2109125_2111243_+	DNA packaging protein	A0A291AWY5	Escherichia_phage	4.7e-292	68.9
AVJ17469.1\|2111239_2111455_+	hypothetical protein	NA	NA	NA	NA
AVJ17470.1\|2111462_2112974_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	9.9e-151	53.7
AVJ17471.1\|2112927_2115015_+	peptidase S14	A0A1W6JT88	Pseudomonas_phage	5.5e-200	58.2
AVJ17472.1\|2115091_2115442_+	hypothetical protein	NA	NA	NA	NA
AVJ17473.1\|2115442_2115802_+	hypothetical protein	NA	NA	NA	NA
AVJ17474.1\|2115804_2116476_+	hypothetical protein	R9TR34	Vibrio_phage	1.5e-21	34.5
AVJ20058.1\|2116494_2117016_+	hypothetical protein	NA	NA	NA	NA
AVJ17475.1\|2117015_2117633_+\|plate	baseplate assembly protein	A0A2I8TV69	Erwinia_phage	3.0e-13	33.2
AVJ17476.1\|2117670_2118030_+\|plate	baseplate assembly protein	V5YTB2	Pseudomonas_phage	2.4e-23	48.6
AVJ17477.1\|2118004_2118922_+\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	3.0e-57	41.9
AVJ17478.1\|2118908_2119445_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	6.8e-30	44.1
AVJ17479.1\|2119449_2120595_+	hypothetical protein	E5FJ29	Escherichia_phage	2.0e-26	47.2
AVJ17480.1\|2120594_2121176_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	1.0e-26	38.6
AVJ17481.1\|2121215_2122742_+\|tail	phage tail protein	R9TMQ0	Vibrio_phage	9.2e-72	36.0
AVJ17482.1\|2122738_2123245_+\|tail	phage tail protein	NA	NA	NA	NA
AVJ17483.1\|2123302_2123602_+	hypothetical protein	K4I007	Acidithiobacillus_phage	4.2e-05	34.2
AVJ17484.1\|2123705_2125337_+	hypothetical protein	R9TRP8	Vibrio_phage	1.1e-46	33.0
AVJ17485.1\|2125333_2125810_+\|tail	phage tail protein	V5YTC2	Pseudomonas_phage	1.0e-21	39.8
AVJ20059.1\|2125784_2126000_+\|tail	phage tail protein	NA	NA	NA	NA
AVJ17486.1\|2126001_2127129_+	late control protein D	R9TNM7	Vibrio_phage	8.7e-35	31.8
AVJ17487.1\|2127143_2129312_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	3.6e-13	27.0
AVJ17488.1\|2129325_2130123_+	hypothetical protein	NA	NA	NA	NA
AVJ17489.1\|2130650_2130965_-	hypothetical protein	NA	NA	NA	NA
AVJ17490.1\|2131993_2134174_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
AVJ17491.1\|2134388_2135732_+	enterochelin esterase	NA	NA	NA	NA
AVJ17492.1\|2135744_2135972_+	MbtH family protein	NA	NA	NA	NA
AVJ17493.1\|2136023_2144549_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.5e-75	20.0
2137552:2137571	attR	NA	NA	NA	NA
AVJ17494.1\|2144614_2145901_+	enterobactin transporter EntS	NA	NA	NA	NA
AVJ17495.1\|2145916_2146897_-	Fe2+-enterobactin ABC transporter substrate-binding protein	NA	NA	NA	NA
AVJ17496.1\|2147224_2149417_+	ferric-rhodotorulic acid/ferric-coprogen receptor FhuE	NA	NA	NA	NA
AVJ17497.1\|2149444_2150533_+	hypothetical protein	NA	NA	NA	NA
AVJ17498.1\|2150679_2151609_-	esterase	A0A167RJ59	Powai_lake_megavirus	5.7e-08	22.7
AVJ17499.1\|2151730_2152639_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVJ17500.1\|2152750_2153911_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	7.8e-39	36.4
AVJ17501.1\|2154083_2155106_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVJ17502.1\|2155168_2156371_+	MFS transporter	NA	NA	NA	NA
AVJ17503.1\|2157684_2158521_-	MipA/OmpV family protein	NA	NA	NA	NA
AVJ17504.1\|2158727_2159405_+	DNA-binding response regulator	NA	NA	NA	NA
AVJ17505.1\|2159404_2160793_+	sensor histidine kinase	NA	NA	NA	NA
AVJ17506.1\|2160847_2161285_+	hypothetical protein	NA	NA	NA	NA
AVJ17507.1\|2161948_2162623_+	hypothetical protein	NA	NA	NA	NA
AVJ17508.1\|2162664_2162997_-	hypothetical protein	NA	NA	NA	NA
AVJ17509.1\|2163227_2163473_+	hypothetical protein	NA	NA	NA	NA
AVJ17510.1\|2163502_2163781_+	hypothetical protein	NA	NA	NA	NA
AVJ17511.1\|2163755_2164451_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.4e-45	45.0
AVJ17512.1\|2164539_2165130_-	hypothetical protein	NA	NA	NA	NA
AVJ17513.1\|2166928_2169511_-	pilus assembly protein PapC	NA	NA	NA	NA
AVJ20060.1\|2169539_2170178_-	fimbrial chaperone	NA	NA	NA	NA
AVJ17514.1\|2170296_2170854_-	fimbrial protein	NA	NA	NA	NA
AVJ17515.1\|2171269_2171965_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	3.1e-35	36.9
AVJ17516.1\|2172001_2172172_-	hypothetical protein	Q716C1	Shigella_phage	6.5e-19	90.4
AVJ17517.1\|2172269_2172671_-	hypothetical protein	NA	NA	NA	NA
AVJ17518.1\|2172862_2173153_-	lipoprotein bor	C6ZCX3	Enterobacteria_phage	6.7e-32	66.0
AVJ17519.1\|2173365_2174364_+	hypothetical protein	NA	NA	NA	NA
AVJ17520.1\|2175202_2176417_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AVJ17521.1\|2176651_2176936_-	plasmid stabilization protein	NA	NA	NA	NA
AVJ17522.1\|2176928_2177171_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
AVJ17523.1\|2177745_2178027_-	cytoplasmic protein	NA	NA	NA	NA
AVJ17524.1\|2178029_2178239_-	resolvase	NA	NA	NA	NA
AVJ17525.1\|2178659_2178968_+	hypothetical protein	NA	NA	NA	NA
AVJ17526.1\|2179022_2179805_+	hypothetical protein	NA	NA	NA	NA
AVJ17527.1\|2179817_2180744_+	hypothetical protein	NA	NA	NA	NA
AVJ17528.1\|2180740_2181472_+	hypothetical protein	NA	NA	NA	NA
AVJ17529.1\|2181511_2182687_-	hypothetical protein	NA	NA	NA	NA
AVJ17530.1\|2182888_2183467_-	DNA resolvase	A0JC18	Ralstonia_phage	5.8e-27	39.8
AVJ17531.1\|2183616_2186664_+\|transposase	DDE transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3050805 : 3084840

Cronobacter_phage(56.67%)

transposase,integrase,tail,terminase,portal,capsid,head,holin

attL 3047444:3047458|attR 3066893:3066907

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3047444:3047458	attL	NA	NA	NA	NA
AVJ18291.1\|3050805_3051846_+\|transposase	IS630 family transposase	NA	NA	NA	NA
AVJ18292.1\|3051842_3052739_-\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	9.2e-72	45.8
AVJ18293.1\|3052829_3053129_-	transcriptional regulator	Q1JS61	Enterobacteria_phage	3.3e-18	43.4
AVJ18294.1\|3053227_3053581_+	hypothetical protein	NA	NA	NA	NA
AVJ18295.1\|3053577_3053838_+	hypothetical protein	NA	NA	NA	NA
AVJ18296.1\|3053828_3054044_+	hypothetical protein	NA	NA	NA	NA
AVJ18297.1\|3054120_3054429_+	hypothetical protein	NA	NA	NA	NA
AVJ18298.1\|3054663_3055782_+	hypothetical protein	K7RFY5	Vibrio_phage	2.9e-59	62.8
AVJ18299.1\|3055778_3056588_+	adenine methylase	E5G6L8	Salmonella_phage	1.9e-68	51.5
AVJ18300.1\|3056584_3056872_+	DNA-binding protein	NA	NA	NA	NA
AVJ18301.1\|3059023_3059254_+	hypothetical protein	NA	NA	NA	NA
AVJ18302.1\|3059641_3060815_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.1e-136	74.1
AVJ18303.1\|3061240_3061510_-	transcriptional regulator	F1BUM8	Cronobacter_phage	1.9e-25	61.6
AVJ18304.1\|3061571_3062318_-	hypothetical protein	NA	NA	NA	NA
AVJ20118.1\|3062319_3063978_-	hypothetical protein	NA	NA	NA	NA
AVJ18305.1\|3065072_3066113_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	3.3e-129	63.3
AVJ18306.1\|3066109_3067915_-\|terminase	terminase	F1BUM5	Cronobacter_phage	6.6e-194	55.8
3066893:3066907	attR	NA	NA	NA	NA
AVJ18307.1\|3068087_3068966_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	1.6e-44	40.1
AVJ18308.1\|3069023_3070076_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.2e-109	59.6
AVJ18309.1\|3070078_3070882_+\|terminase	terminase	F1BUM0	Cronobacter_phage	7.8e-70	57.1
AVJ20119.1\|3070908_3071370_+\|head	head completion protein	F1BUL8	Cronobacter_phage	1.3e-24	44.7
AVJ18310.1\|3071366_3071864_+\|tail	phage tail protein	A0A1D9C9R7	Salinivibrio_phage	3.1e-08	28.7
AVJ18311.1\|3071847_3072561_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.2e-58	51.5
AVJ18312.1\|3072557_3073682_+\|tail	phage tail protein	F1BUL5	Cronobacter_phage	6.3e-126	62.1
AVJ18313.1\|3073688_3074144_+\|tail	phage tail protein	A5X9I1	Aeromonas_virus	1.8e-47	60.3
AVJ18314.1\|3074149_3074449_+\|holin	holin	C7BGD7	Burkholderia_phage	6.1e-20	56.2
AVJ18315.1\|3074435_3074777_+	hypothetical protein	F1BUL3	Cronobacter_phage	4.0e-44	83.2
AVJ18316.1\|3074776_3075163_+	hypothetical protein	F1BUL2	Cronobacter_phage	2.5e-10	44.1
AVJ18317.1\|3075101_3075281_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.2e-07	54.7
AVJ18318.1\|3075277_3075544_+	hypothetical protein	A5X9I7	Aeromonas_virus	8.6e-18	53.0
AVJ18319.1\|3075728_3077642_+\|tail	phage tail tape measure protein	A0A2I7RNI7	Vibrio_phage	5.9e-100	41.7
AVJ18320.1\|3077634_3077967_+	hypothetical protein	Q94MY3	Haemophilus_virus	6.1e-29	61.9
AVJ18321.1\|3077963_3079148_+	hypothetical protein	F1BUK6	Cronobacter_phage	4.5e-143	62.3
AVJ18322.1\|3079140_3079743_+	hypothetical protein	F1BUK5	Cronobacter_phage	5.3e-47	51.1
AVJ18323.1\|3079821_3081423_+	hypothetical protein	F1BUK3	Cronobacter_phage	2.1e-50	40.6
AVJ18324.1\|3081426_3081924_+\|tail	tail assembly chaperone	Q37843	Escherichia_phage	1.3e-27	44.0
AVJ18325.1\|3081923_3082625_+	hypothetical protein	U3PIM3	Vibrio_phage	4.0e-06	27.1
AVJ18326.1\|3082621_3083176_+	hypothetical protein	F1BUJ9	Cronobacter_phage	7.8e-29	47.5
AVJ18327.1\|3083172_3084840_+	hypothetical protein	F1BUJ7	Cronobacter_phage	1.6e-122	41.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023268

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection