CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027171	Pseudomonas aeruginosa strain AR_0354 chromosome, complete genome	2 crisprs	RT,csa3,DinG,DEDDh,PD-DExK,WYL,cas3	0	3	5	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027171_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027171_2

4722505-4722652

Orphan

Consensus_repeat	Method
GGAGGCTCCAGCGCAGACGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027171_2

>merge|CP027171|2|4722505-4722652|CRISPRCasFinder
GGAGGCTCCAGCGCAGACGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAGAGAACAAAGGGGACAGATTTATTTTCCCTACTCTAGTTTTCTAAGCAAGGAGGCTCCAGCGCAGCCGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG

>CP027171|2|1|4722505-4722652|CRISPRCasFinder
GGAGGCTCCAGCGCAGACGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG	AGAACAAAGGGGACAGATTTATTTTCCCTACTCTAGTTTTCTAAGCAA
GGAGGCTCCAGCGCAGCCGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP027171.1\|AVK14417.1\|4702077_4702293_+\|dodecin-family-protein	unknown	unknown	gnl\|CDD\|225896
CP027171.1\|AVK13143.1\|4703001_4704690_+\|POTRA-domain,-ShlB-type-family-protein	unknown	unknown	gnl\|CDD\|225387
CP027171.1\|AVK11558.1\|4728211_4728850_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368539
CP027171.1\|AVK13094.1\|4725248_4726622_+\|exoenzyme-S	unknown	unknown	gnl\|CDD\|227872
CP027171.1\|AVK10443.1\|4699777_4700986_-\|tryptophan-synthase,-beta-subunit	unknown	unknown	gnl\|CDD\|235288
CP027171.1\|AVK12814.1\|4723016_4723412_+\|putative-lipoprotein	unknown	unknown	unknown
CP027171.1\|AVK09971.1\|4701089_4701977_+\|lysR-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|176171
CP027171.1\|AVK11168.1\|4721210_4722032_-\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|222853
CP027171.1\|AVK11128.1\|4723676_4724930_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225715
CP027171.1\|AVK11920.1\|4727117_4727804_+\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|224379
CP027171.1\|AVK14725.1\|4717706_4720613_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377410
CP027171.1\|AVK09813.1\|4704802_4716418_+\|filamentous-hemagglutinin-family-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|379124
CP027171.1\|AVK13796.1\|4723425_4723680_-\|toxin-SymE,-type-I-toxin-antitoxin-system-family-protein	unknown	unknown	gnl\|CDD\|370150
CP027171.1\|AVK12990.1\|4722064_4722373_-\|transposase-family-protein	unknown	unknown	gnl\|CDD\|225511
CP027171.1\|AVK10646.1\|4720811_4720949_+\|hypothetical-protein	unknown	unknown	unknown
CP027171.1\|AVK12782.1\|4727834_4728188_+\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|226710
CP027171.1\|AVK14962.1\|4702482_4702704_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369019
CP027171.1\|AVK10404.1\|4729529_4731191_-\|hypothetical-protein	unknown	unknown	unknown
CP027171.1\|AVK10101.1\|4728864_4729248_-\|helix-turn-helix-family-protein	unknown	unknown	gnl\|CDD\|238045
CP027171.1\|AVK11904.1\|4731800_4731941_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027171.1\|AVK14417.1\|4702077_4702293_+\|dodecin-family-protein	gnl\|CDD\|225896	COG3360, COG3360, Uncharacterized conserved protein [Function unknown].	6.39458e-35
CP027171.1\|AVK13143.1\|4703001_4704690_+\|POTRA-domain,-ShlB-type-family-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	9.26606e-164
CP027171.1\|AVK11558.1\|4728211_4728850_+\|hypothetical-protein	gnl\|CDD\|368539	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.	2.3215e-121
CP027171.1\|AVK13094.1\|4725248_4726622_+\|exoenzyme-S	gnl\|CDD\|227872	COG5585, COG5585, NAD+--asparagine ADP-ribosyltransferase [Signal transduction mechanisms].	1.87747e-56
CP027171.1\|AVK10443.1\|4699777_4700986_-\|tryptophan-synthase,-beta-subunit	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
CP027171.1\|AVK11128.1\|4723676_4724930_-\|hypothetical-protein	gnl\|CDD\|225715	COG3174, COG3174, Predicted membrane protein [Function unknown].	7.51308e-88
CP027171.1\|AVK14962.1\|4702482_4702704_+\|hypothetical-protein	gnl\|CDD\|369019	pfam06649, DUF1161, Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.	1.04227e-23
CP027171.1\|AVK11168.1\|4721210_4722032_-\|integrase-core-domain-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.31633e-88
CP027171.1\|AVK12782.1\|4727834_4728188_+\|putative-lipoprotein	gnl\|CDD\|226710	COG4259, COG4259, Uncharacterized protein conserved in bacteria [Function unknown].	2.32647e-62
CP027171.1\|AVK11920.1\|4727117_4727804_+\|putative-lipoprotein	gnl\|CDD\|224379	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane].	3.72394e-88
CP027171.1\|AVK14725.1\|4717706_4720613_+\|hypothetical-protein	gnl\|CDD\|377410	pfam04830, DUF637, Possible hemagglutinin (DUF637). This family represents a conserved region found in a bacterial protein which may be a hemagglutinin or hemolysin.	7.24788e-40
CP027171.1\|AVK09813.1\|4704802_4716418_+\|filamentous-hemagglutinin-family-N-terminal-domain-protein	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	8.68186e-41
CP027171.1\|AVK13796.1\|4723425_4723680_-\|toxin-SymE,-type-I-toxin-antitoxin-system-family-protein	gnl\|CDD\|370150	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system. SymE (SOS-induced yjiW gene with similarity to MazE ) is an SOS-induced toxin. It inhibits cell growth, decreases protein synthesis and increases RNA degradation. It may play a role in the recycling of RNAs damaged under SOS response-inducing conditions. It is predicted to have an AbrB fold, similar to that of the antitoxin MazE. Its translation is repressed by the antisense RNA SymR, which acts as an antitoxin.	0.00701735
CP027171.1\|AVK12990.1\|4722064_4722373_-\|transposase-family-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.08397e-14
CP027171.1\|AVK09971.1\|4701089_4701977_+\|lysR-substrate-binding-domain-protein	gnl\|CDD\|176171	cd08482, PBP2_TrpI, The C-terminal substrate binding domain of LysR-type transcriptional regulator TrpI, which is involved in control of tryptophan synthesis, contains type 2 periplasmic binding fold. TrpI and indoleglycerol phosphate (InGP), are required to activate transcription of the trpBA, the genes for tryptophan synthase. The trpBA is induced by the InGp substrate, rather than by tryptophan, but the exact mechanism of the activation event is not known. This substrate-binding domain of TrpI shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.34631e-98
CP027171.1\|AVK10101.1\|4728864_4729248_-\|helix-turn-helix-family-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.28572e-09

>CP027171.1|AVK12990.1|4722064_4722373_-|transposase-family-protein
MSKQRRTFSAEFKREAAALVLDQGYSHIDACRSLGVVDSALRRWVKQLEAERQGVTPKSKALTPEQQKIQELEARINRLEREKAILKKATALLMSDELDRTR
>CP027171.1|AVK11168.1|4721210_4722032_-|integrase-core-domain-protein
MVCSAFDVARSCYYVHRLRRRRVDARRVALRSQVNQLFSQSRGSAGSRSILGMLREEGVTIGRFRVRRLMRELGLVSKQPGSHAYKQATVERPDIPNRLNREFATEHPNQVWCGDITYVWAQGRWHYLAAVLDLHTRRVIGWAFSAKPDAELVIKALDMAYEQRGKPQQVLFHSDQGSQYASRLFRQRLWRYRMQQSMSRRGNCWDNSPMERLFRSLKSEWVPSTGYLTAQEAQRDISHYLMHRYNWIRPHQFNDGLPPAVAEEKLNPLSGMG
>CP027171.1|AVK10646.1|4720811_4720949_+|hypothetical-protein
MVFYSDLHAIEYIYFKIYDKSFLVKLREYWSNNLRDYCYLFFPGE
>CP027171.1|AVK14725.1|4717706_4720613_+|hypothetical-protein
MPVSDSPHKDQLHLQLGVGLSAEQMAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLAPNGALIQGRDVKLVSGGDLHNVGTLRARNDLSATADNLDNSGLIEAGKRLDLLAGDSIRNRQGGVIAGRDVSLTALTGDVINERSVTRYDSALDGRTWERSFADSAARVEAANSLNVQAGRDIANLGGVLQSRGDLSLDAGRDVTVAAVEDRQGQTRWNTSRLQSVTQLGAEVSAGRDLNVSAGRDLSAVASALEARRDIALSAGRDVTLAAAANEEHAYSKTRKVTYQEDKVAQQGTRVDAGGDLAINAGQDLRLIASQASAGDEAYLVAGDKLELLAANDSNYYLYDKKKKGDFGRKETRRDEVTDVKAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVTFEAVKDLHQESHEKSKGDLAWQSSKGKGQTDETVRQSQIVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDAMVQADPQLAWLKEAEQRGDVDWRMVQEVHDSWKYSNSGLGAAPSLAIAIVAAAYLGPVYGAMASNLATGTINNGGDFGKGLKFATSSNALKGYAVAGATAYLVSPQLDEMFGVSTDNVNKVTKGFDLSTMSGLGGFATYSIIQGLSQAGIQTAAFGGSFADNLGDAMAGQATNLAMAAGFNLIGDWADGKFDSGSPQKIMAHALMGGLLAQATGGDFKTGAMAAGANEALVNVLSNMAGGEEKLELMASQLTGLLAATVVDGDVAKGAEIAKNATAYNQQVHRDALSRLKRGMSALHEQGKYADLEPEIVLAELQKIASGEAKSVSDLNPKVVQFLNSEFSPASLRETLFEPESWEEYAAIAVDVLYPTPGGKAAAIEKAGGKLSKEALEALEKKFSESTKQELKSKLLQEDPRNLIPTQTKAEMSGSQIKRIVKSIKENGFDQEKPVDVWRNPKTGRLEIQDGHHRTEAAKKAGLDKIPVSIWE
>CP027171.1|AVK09813.1|4704802_4716418_+|filamentous-hemagglutinin-family-N-terminal-domain-protein
MDIRSPLNQCIALSLAGILFLNPIVAAAAGLALDKAAGGNTGLGQAGNGVPIVNIATPNGAGLSNNHFRDYNVGANGLILNNATGKTQGTQLGGIILGNPNLKGQAAQVILNQVTGGNRSTLAGYTEVAGQSARVIVANPHGITCQGCGFINTPRATLTTGKPIMDGQRLERFQVDGGDIVVEGAELNVGNLEQFDLITRSAKLNAKLYAKNLNIVTGRNDVQADSLQATPRAADGSEKPQLAIDSSALGGMYAGAIRLVGTEQGVGVKLAGDMAASGGDIRIDASGKLSLAQASSQGDLKIAAQAVELNGKTYAGGSAEIRSAEELVNRQSLAARERIALEAAHIDNAGVIEAGVEPDERRNARGDLELRSGTLRNAGSLVASRALEAKASQALDNQGGSLKGATVRVDGGHLDNRGGKLLAEGELRVEASSLDNRQDGLLQSRDRAVVKTRGDLDNRGGQVIGLNDLEVGAATLDNGQQGLLGSQQSTRVSAQALVNRGDGEVSGKRVEARVGSLDNRGGKLIGDDLLVVASGAIDNRLGLFSAANRLDLRARSLDNSGKGTLSSRGGLEVSLGGLLDNRDEGNLLSQGAQRVTVGQLDNRAGGLLSSRSELNVHGASLDNRGGVLVADAGLSATGGAFDNRDGGSASGKAGVRVEVASLRNDQGGKLLSDGRLDLAANAVGNAGGRIAAKGDLQATLGSLAQQGGELVSEKTLKVAADTLDNSQSGLIAANGGIAIEARQVDNRAGEISSTSKVAVNAREQLDNRGGKVIGDSGLRLTVQRLLNQAKGVLAGRDGLSLDGGELFNGDGGRLDSQNSLSVSLGGVLDNQGGALVSEGSLTARAARLDNRGGTFSSAGALALTSQAALDNQGGRLLSDAGVTLKGASLDNSRSGVISAKGAVDIRTGVLDNSRNGGIGSNAGITLVAARLDNGQQGRVSAKGLLDANLKGLDQRGGGVLVSETGVTLDLNGGTLVNRDGGLIATPGALLLRQLGAVDNGAGGEISSDRAFTLAAASLDNRGGRLIGADSLTLRIAQALDNSLGGVISGAAGLDIAAARLDNSAKGTLASRAGIDLRVDGALDNHAEGTVSGARLTLASASLDNSGKGLLSGNAGLSVVTGALDNAEGGQLISQGVLDVSSADLDNRGGALSGKQSLRLSAANLDNRGGLLTSDGELELTAGRVDSADGGEISARGDLRLTVERLVQRQGRLIGERGVSLDLRGGDLDNQGGLISARGPLSIERLNVLDNRQGGEISSQQGFELLARRIDNGQQGRIISAGKLRLDADALGNAGAGLLSGWQGLTVTGGSLDNSAGGTLSSKDGELAISLGGALDNHGQGALVSKGAQRIDAASLDNAQGIVSGESDVTLSIAGKLDNGQGGLVSAQRALSFERDDTLLNNAGGRINGGSLLLKGASLDNSDGQLISQGRLDAILGGALVNTGAARLASGGDLLLRSASVDNRGGKLVSQGLLEISAGSLDNSASGTLAGQADMSLRLGGGALRNQQDGLIFSQAGALEVQAGSLDNRQGTLQAQGDNRLRIGGALDNQGGRLDSRAGNLDLQSGSLDNGAGGVLNSAKGWLKLVTGLFDNSAGVTQAQSLEIRAGQGVRNQQGHLSALGGDNRIVTADFDNQGGGLYASGLLSLDGQRFLNQGAAAGQGGKVGAGRIDFSLAGALANRFGQLESESELQLRAAAIDNSGGSLRALGRSGSTRLVAGGLNNAYGVLESANQDLDLQLGSLANAGGRILHTGNGTFGLDSGQVIRAGGELTTNGLLDIRASEWTNSSVLQAGRLNLDIGTFRQTADGKLLAVQSFTGRGGDWSNDGLLASDGSLRLDLSGGYRGNGRATSLGDFALNAASLDLGNAASLAGGANVTLGAGNLLVNRGRITAAGDLVASAASLNNYGTLGGGGNLRLNAPALLNERGLLFSGADMTLRAGDITNLYGDVYSLGRLDIARDDAGNRAASLRNLSGVIESGKDFSLRASLIENRRAVLESKSGLYTAKMEQTACIEGVNAGDCSGKRNAIWTITQRDKTEVTASSAMGQLLAGGDFAIDGGTLNNLSSLIGSGGNLTANLEVLDNQGLETGELETIRVLRTARGGDIGGIDQKSRNFTNLYWYQSANFDPARAGEIPAALNAILSDWSFEYEFPSKGPTPISSGDQSYAAVIQAAGDVTVNASTRIDNGVTRPGYTFVGSGRQVGDSAVGGSGVSVVVPLTSQLPPDLARRQVNPVTLPGFSLPQGDNGLFRLSSRFAEDGNGSAALGAGADRTQGGSGVSVGQQGAGNVAGTWQGQGVRVDGLAGAANVQGQGGSALGGSLPGVARVQGVPGNATPSASHKYLIETNPALTELKQFLNSDYLLSGLGMNPDDSKKRLGDGLYEQRLIRDAVVARTGQRYIDGLSSDEALFRYLMDNAIAYKDKLQLQLGVGLSAEQMAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLAPSGALIQGRDVKLVSGGDLHNVGTLRARNDLSATADNLDNSGLIEAGKRLDLLAGDSIRNRQGGVIAGRDVSLTALTGDVINERSVTRYDSALDGRTWERSFADSAARVEAANSLNVQAGRDIANLGGVLQSRGDLSLDAGRDVTVAAIEDRQGQTRWNTSRLQSVTQLGAEVSAGRDLNVSAGRDLSAVASALEARRDIALSAGRDVTLAAAANEEHSFATGKKVTAKNDRVEHQSTVVSAGGDLSVQGGNDVTFVASQAKASNEAYLYAGNDLNLLAAHDESYSYYAKKKKGSFGRSSSRMSESETSTVVSSSIQAGQGAELVAKRDVNVEASSASSMKGELTVVAGRDVNLTAAANSYSSASAKSKSGGLGLSSTSKANAQSSSYTSVQGATLSGDTTVVQARRDISVAASNVVSTGKTALRAGNDIIIDSVAETSESHRSESKKKSGLMSSGGIGITLGTAKNASTQDTRTVVNQGSTIGSVLGDVDMRAGKNLSITASDVVAGKDINLVGQNVSILAADNQNVSEQTRKTSKSGLTLALSGTVGSAIDATYQNAKQARNEDDSRLSALQGIKAGLSGVQAWQAAQQNGGMTGENSAQFVGISASLGSQKSSSRQRQEQQISQGSTLTAGGNLNIIATGSGAVGEDGDLRVQGSKLQAGKDLQLIANRDVVLEAAANTQKLDGKNKSSGGAVGVSVGVGSGEAGISIFANANKGAGKEIGNGTTWTETTLDAGQKASLVSGRDTTLKGAQVNGESILAKVGRDLTLQSLQDRDYYDSKQKNVGGGASLAIVGQGGGANLSLSQSKLHSKYDSVQEQTGLFAGKGGFQVEVGKHTQLDGSVIASTAEAEKNRLSTGSLGWSEIRNKAEYKSQLQSVSVSSANDGAGAFVSNMPSGMLIAYNHGDSASGTTGSAISEGTLEVRDPARQQQDVATLSRDPSRANDSVSPIFDKEKEQKRLQQVQLIGEIGTQAMDILRTQGQLDADKAARAELEARGISAPDAGASERQVEDYRKALLGTNAYQDIMGKYGTGGDYQKAAQAVTAALQGLAGGDIGSALAGASSPYVAGVIKQVAGDNDTARIMAHAVLGAVVAQAQGNSAAAGGAGAAGSELAAQVISERLYGTRDSATLNEAQKQTITALASLAGGLAGSVVDGSSGGAIAGAAGGKNATENNFLGGGTPPGLISYGQAASSLTEYMRKNGATAEEITQAQRDLAQGQGFDGVQPANEFIKAWGEAMVAEAAGLGIVAGLGRFGLWGAKGATPVVTAEGRIGNSVFTDVNQTARPAAQANPNQPTLIADRVDAKIAAKGTPHPNGNMADAHAEIGVIQKAFNEGKTVGSDMTMNVVGKDVCGYCRGDIAAAASKSGLKSLTIQAKDDITGLPKTYYWEVGMKSIREKKI
>CP027171.1|AVK13143.1|4703001_4704690_+|POTRA-domain,-ShlB-type-family-protein
MALHRLAFIFLCLPLMASAAPFTSPGDRDLIRDRQQRLLDEQRKRLEELQQLPGKGAPAAADASGDDERCFEIRRIELEGAGHLDESARRQLLAPYQGRCLGVGQLNALLKAVTDHYLDRGYVTTRAYLPQQDLASGTLRIIVVEGRLEGLDSSALASPRELAMSFPGRTGELLDLRELEQLVDQLSRLPSRQAQLELVPGSEVGGSRVRLKGERDKPWRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQLNLRANRDAVTDRWRHSDSQSLFYSLPWGWWTFTYGYSQSDYRTRNEASGFPFKLDGDSRSHQFRAERVLHRDGVSKTAMSLGLSHQRTNNYVEDTRLEDQSTRITETQLGFNHGRRIGSGFVNLDLGWQQGIGALGAQGRGHPQAGDPNARYDKYSLTLSYLQPFQLWGERFSFDSLATGQRSEDVLFSPQRISLGGNSSVRGFKDQTLTGDSGGYWRNQLRWRRAVEWAPLRPWLQEYGVAFAYDVGVIRHDRYNDGASGRMSGNAIELDARGRYFAASVGFARSLERPSAIERREHPIYFRVDAFF
>CP027171.1|AVK14962.1|4702482_4702704_+|hypothetical-protein
MKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKANGVPAYTLEIVDKGSVTDKKVVGTCDGGTKEIVYQRG
>CP027171.1|AVK14417.1|4702077_4702293_+|dodecin-family-protein
MSNHHTYKKIELVGSSKTSIEDAINNALAEAAKSIQHLEWFEVVDTRGHIENGAVGHYQVTLKVGFRIANS
>CP027171.1|AVK09971.1|4701089_4701977_+|lysR-substrate-binding-domain-protein
MSRDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLLEDDLGVALFGKDGRGVKLTDSGVRLRDVCGDAFERLRGVCAELRRQTAEAPFVLGVPGSLLARWFIPRLDQLNRALPDLRLQLSTSEGEFDPRRPGLDAMLWFAEPPWPADMQVFELAPERMGPVVSPRLAQETGLAQAPAARLLQEPLLHTASRPQAWPAWAASQGLAAEALRYGQGFEHLYYLLEAAVAGLGVAIAPEALVRDDLAAGRLAAPWGFIETDARLALWVPARLHDPRAGRLAQWLREQLAG
>CP027171.1|AVK10443.1|4699777_4700986_-|tryptophan-synthase,-beta-subunit
MTSYRNGPDAKGLFGRFGGQYVAETLMPLILDLAREYEKAKDDPAFQEELAYFQRDYVGRPSPLYFAERLTEHCGGAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIDRQQANVFRMKLLGAEVIPVTAGTGTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQLAEKEGRLPDSLVACIGGGSNAMGLFHPFLDDAGVQIVGVEAAGHGIDTGKHAASLNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDTGRVEYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHHMQQESKA
>CP027171.1|AVK12814.1|4723016_4723412_+|putative-lipoprotein
MPVLALRLTALAALAISVSGCVMEAYGSRARSDAQSWIGLPIQDVIKRFGEPERVTGDAARQKYVWKEYENYSHDYDYTYYEQGHGNTPNSSVLNQKTGTANQSGYYTCIYEFFADASGRVVDATARGECR
>CP027171.1|AVK13796.1|4723425_4723680_-|toxin-SymE,-type-I-toxin-antitoxin-system-family-protein
MRRRGKLGAPLDESDDNRLAPRINLRGYWLQRPGFEDRTRTRVRQGGLAITAERGEGTPPRWTEASLRGRRQGGGWLSQSPFAA
>CP027171.1|AVK11128.1|4723676_4724930_-|hypothetical-protein
MTLSLDLLLSLCTALAIGLLIGAERGWQERDHEDARQIAGIRTFSLAGLLGGFATLLAGELGSAVWVALLLALAALAVAGYVSDVRRGGDQGMTTEIALLMTFLLGSLALTEQRLLAAAGGIVLTLLLSLKDKLHALLKRLTAEELSGTLKLLFISVVLLPVLPNQGYGPWAFFNPYLTWWMVVLIAALGFSAYLAIRLIGSRKGLLLTAVLGGLVSSTVMTLTLARLRERMPDALLACALLATSALMFPRILVEIGAIHPALLKELALPFAATTLVYLGGTLFHALRGGRASQEAPDEPGLRNPFELLPALRFAALLSAILLLVEVGRRLFGDAGIYAVALLSGLADVDAITLSLARAAQGELDPGVASRGIALAALSNSLVKAGLVVLVGGKRLALQTLPFSLAGLLVGALLILL
>CP027171.1|AVK13094.1|4725248_4726622_+|exoenzyme-S
MHIQSSQQNPSFVAELSQAVAGRLGQVEARQVATPREAQQLAQRQEAPKGEGLLSRLGAALARPFVAIIEWLGKLLGSRAHAATQAPLSRQDAPPAASLSAAEIKQMMLQKALPLTLGGLGKASELATLTAERLAKDHTRLASGDGALRSLATALVGIRDGSLIEASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSASPEQLREIAVQLHAVMDKVALLRHAVESEVKGEPVDKALADGLVEHFGLEAEQYLGEHPDGPYSDAEVMALGLYTNGEYQHLNRSLRQGRELDAGQALIDRGMSAAFEKSGPAEQVVKTFRGTQGRDAFEAVKEGQVGHDAGYLSTSRDPSVARSFAGLGTITTLFGRSGIDVSEISIEGDEQEILYDKGTDMRVLLSAKDGQGVTRRVLEEATLGERSGHSEGLLDALDLATGTDRSGKPQEQDLRLRMRGLDLA
>CP027171.1|AVK11920.1|4727117_4727804_+|putative-lipoprotein
MSHSANKALLPLLAVATLAGLAGCATETSTALPVQQVESVNRPYSGVRSPIAVGKFDNRSSYMRGIFSDGVDRLGGQAKTILITHLQQTNRFNVLDRDNMSEIQQEAAIKGQAQRLKGADYVVTGDVTEFGRKEVGDRQLFGILGRGKSQIAYAKVALNIVNISTSEVVYSTQGAGEYALSNREVIGFGGTASYDSTLNGKVLDLAMREAVNKLVNAVDSGAWKPQNQ
>CP027171.1|AVK12782.1|4727834_4728188_+|putative-lipoprotein
MSKTITWTAALLGSMALAGCSGPKTLYQWEGYQAQVHEYFKGESKEAQAQALEADLEKIRAKNGAVPPGYHAQLGLLYSSIGKDDQMVREFETEKALFPESATYMDFLLNNARGGAR
>CP027171.1|AVK11558.1|4728211_4728850_+|hypothetical-protein
MAGFTLLALLGGCAPTKSVDYSAFKQAKPRSILVLPPLNESPDVKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRYMVISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD
>CP027171.1|AVK10101.1|4728864_4729248_-|helix-turn-helix-family-protein
MSFAQNLLRLRQQNALTQRQMAERLGITVSQLRHFETKGGHPSLVVLQTIAGRFAVPLDWLVCERSERQALPEDLRLQFEAIGRLRLDERRAIRALLDDLIRQYMAKRNAAAKPLPAACAEATETSP
>CP027171.1|AVK10404.1|4729529_4731191_-|hypothetical-protein
MRYARHASRYSLFALAVSAALLPGAGWAANGDLAGARTPPSVACSWDREAALSYEERRLDTPLPFSGANVVTHDQTPLAERIVKGAGFDGFEPAFAKRLCAADGRTPVTSYAKALKLVTEEGRALWRAAVDRAQGRRAIPAGALPASDDRMLYWTRLYMTRTLRQWAPSFHLGKAQAQALQWRFERASRGQLDIDLPRRYAADGSRYRRMIISGFDVFTLGTPGTANTGLRNGNPSGATALALDGREFRLADGSLLRIEAYLLPVSYDPFNRGMQEDTLGPWFRPGPRRVDASITISQGGANQFWLEAWNGRFHGSSAGNDGIVYCPADSALPNYVLPLGSVTNPGTAPISLRGSGCNINPPRRWLGYDSASRWRQNLPAQFSKASLPVRQLLAADTWRGIERPPGATSQAAEGFDVTWHTNYDFFPDCANPRTENVPTNGVMNAMPDPSLVLPPNRRICARNGGGGDYLSNESAYRNTVLRDAFRLEIPAGHIHVPVMNNYYTGVPASGGGARNDNAISDARYEAYRSAIVAQTRALLVGVGNALAQGAQAD
>CP027171.1|AVK11904.1|4731800_4731941_+|hypothetical-protein
MKRKMLAASLLLWMFSLTAQADCAVLGPGEDPCAGPVLGPTVCECP

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Crispr_ID: CP027171_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027171_3

5004560-5004673

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027171_3

>merge|CP027171|3|5004560-5004673|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>CP027171|3|2|5004560-5004673|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
CP027171.1\|AVK12953.1\|4996940_4998299_+\|glutamine-synthetase,-catalytic-domain-protein	unknown	unknown	gnl\|CDD\|223252
CP027171.1\|AVK10276.1\|5001372_5002470_+\|bacterial-extracellular-solute-binding-family-protein	unknown	unknown	gnl\|CDD\|270377
CP027171.1\|AVK15490.1\|5012372_5013002_+\|2OG-Fe(II)-oxygenase-superfamily-protein	unknown	unknown	gnl\|CDD\|226274
CP027171.1\|AVK15015.1\|5013023_5013578_-\|hypothetical-protein	unknown	unknown	unknown
CP027171.1\|AVK11507.1\|4992449_4993115_-\|bacterial-regulatory,-tetR-family-protein	unknown	unknown	gnl\|CDD\|224228
CP027171.1\|AVK14626.1\|5011502_5012255_-\|hypothetical-protein	unknown	unknown	unknown
CP027171.1\|AVK13171.1\|5013843_5014338_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224597
CP027171.1\|AVK12980.1\|4994492_4995869_-\|glutamine-synthetase,-catalytic-domain-protein	unknown	unknown	gnl\|CDD\|223252
CP027171.1\|AVK13599.1\|4999853_5000954_+\|putative-lipo-family-protein	unknown	unknown	gnl\|CDD\|270377
CP027171.1\|AVK12671.1\|5009853_5010429_-\|putative-thiol-disulfide-isomerase-and-thioredoxins-protein	unknown	unknown	gnl\|CDD\|239267
CP027171.1\|AVK13855.1\|5005716_5008104_-\|penicillin-amidase-family-protein	unknown	unknown	gnl\|CDD\|225241
CP027171.1\|AVK15631.1\|4993175_4994237_-\|bacterial-extracellular-solute-binding-family-protein	unknown	unknown	gnl\|CDD\|270377
CP027171.1\|AVK15320.1\|4991408_4992287_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
CP027171.1\|AVK11511.1\|5010541_5011483_+\|lysophospholipase-family-protein	unknown	unknown	gnl\|CDD\|225176
CP027171.1\|AVK12528.1\|4998364_4999735_+\|beta-eliminating-lyase-family-protein	unknown	unknown	gnl\|CDD\|180994
CP027171.1\|AVK13403.1\|5002524_5003679_+\|polyamine-ABC-transporter,-ATP-binding-family-protein	unknown	unknown	gnl\|CDD\|183226
CP027171.1\|AVK11774.1\|5008214_5009267_+\|arabinose-binding-domain-of-AraC-transcription-regulator,-N-term-family-protein	unknown	unknown	gnl\|CDD\|378890
CP027171.1\|AVK12813.1\|4996147_4996900_+\|peptidase-C26-family-protein	unknown	unknown	gnl\|CDD\|336781
CP027171.1\|AVK12749.1\|5008100_5008250_-\|hypothetical-protein	unknown	unknown	unknown
CP027171.1\|AVK13460.1\|5009245_5009749_-\|putative-transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027171.1\|AVK12953.1\|4996940_4998299_+\|glutamine-synthetase,-catalytic-domain-protein	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
CP027171.1\|AVK10276.1\|5001372_5002470_+\|bacterial-extracellular-solute-binding-family-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
CP027171.1\|AVK15490.1\|5012372_5013002_+\|2OG-Fe(II)-oxygenase-superfamily-protein	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	1.82307e-67
CP027171.1\|AVK11507.1\|4992449_4993115_-\|bacterial-regulatory,-tetR-family-protein	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.54898e-08
CP027171.1\|AVK13171.1\|5013843_5014338_+\|hypothetical-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	1.65548e-66
CP027171.1\|AVK12980.1\|4994492_4995869_-\|glutamine-synthetase,-catalytic-domain-protein	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
CP027171.1\|AVK13599.1\|4999853_5000954_+\|putative-lipo-family-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
CP027171.1\|AVK12671.1\|5009853_5010429_-\|putative-thiol-disulfide-isomerase-and-thioredoxins-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00270287
CP027171.1\|AVK13855.1\|5005716_5008104_-\|penicillin-amidase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
CP027171.1\|AVK15631.1\|4993175_4994237_-\|bacterial-extracellular-solute-binding-family-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.13028e-163
CP027171.1\|AVK15320.1\|4991408_4992287_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
CP027171.1\|AVK11511.1\|5010541_5011483_+\|lysophospholipase-family-protein	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	6.84301e-56
CP027171.1\|AVK12528.1\|4998364_4999735_+\|beta-eliminating-lyase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
CP027171.1\|AVK13403.1\|5002524_5003679_+\|polyamine-ABC-transporter,-ATP-binding-family-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
CP027171.1\|AVK11774.1\|5008214_5009267_+\|arabinose-binding-domain-of-AraC-transcription-regulator,-N-term-family-protein	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.67458e-32
CP027171.1\|AVK12813.1\|4996147_4996900_+\|peptidase-C26-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	3.1783e-108

>CP027171.1|AVK13403.1|5002524_5003679_+|polyamine-ABC-transporter,-ATP-binding-family-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>CP027171.1|AVK10276.1|5001372_5002470_+|bacterial-extracellular-solute-binding-family-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>CP027171.1|AVK13599.1|4999853_5000954_+|putative-lipo-family-protein
MKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>CP027171.1|AVK12528.1|4998364_4999735_+|beta-eliminating-lyase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>CP027171.1|AVK12953.1|4996940_4998299_+|glutamine-synthetase,-catalytic-domain-protein
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>CP027171.1|AVK12813.1|4996147_4996900_+|peptidase-C26-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACGKRAGQR
>CP027171.1|AVK12980.1|4994492_4995869_-|glutamine-synthetase,-catalytic-domain-protein
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>CP027171.1|AVK15631.1|4993175_4994237_-|bacterial-extracellular-solute-binding-family-protein
MPRLSVLLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPASAQHPRQAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>CP027171.1|AVK11507.1|4992449_4993115_-|bacterial-regulatory,-tetR-family-protein
MQPTSSIRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLTGFISDLNR
>CP027171.1|AVK15320.1|4991408_4992287_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNHTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>CP027171.1|AVK13855.1|5005716_5008104_-|penicillin-amidase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLIAEKVNPDNPNQVWYQGKWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWKGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRAAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>CP027171.1|AVK12749.1|5008100_5008250_-|hypothetical-protein
MGQGAGRRVVLHGGSSRLTKDFQGPSIRSMPRAGGIRRMLGTTTRRKDR
>CP027171.1|AVK11774.1|5008214_5009267_+|arabinose-binding-domain-of-AraC-transcription-regulator,-N-term-family-protein
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHGVLTRHAEEQTRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREKGYSTSGT
>CP027171.1|AVK13460.1|5009245_5009749_-|putative-transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASTLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>CP027171.1|AVK12671.1|5009853_5010429_-|putative-thiol-disulfide-isomerase-and-thioredoxins-protein
MTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLVALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>CP027171.1|AVK11511.1|5010541_5011483_+|lysophospholipase-family-protein
MSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>CP027171.1|AVK14626.1|5011502_5012255_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>CP027171.1|AVK15490.1|5012372_5013002_+|2OG-Fe(II)-oxygenase-superfamily-protein
MHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRIRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESAACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>CP027171.1|AVK15015.1|5013023_5013578_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>CP027171.1|AVK13171.1|5013843_5014338_+|hypothetical-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGSRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027171_1	1.1\|3298953\|23\|CP027171\|CRT	3298953-3298975	23	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	13811-13833	0	1.0
CP027171_1	1.1\|3298953\|23\|CP027171\|CRT	3298953-3298975	23	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	1066-1088	0	1.0
CP027171_1	1.2\|3298997\|33\|CP027171\|CRT	3298997-3299029	33	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	1012-1044	0	1.0
CP027171_1	1.2\|3298997\|33\|CP027171\|CRT	3298997-3299029	33	NZ_CP030914	Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence	25270-25302	0	1.0
CP027171_1	1.2\|3298997\|33\|CP027171\|CRT	3298997-3299029	33	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	13855-13887	0	1.0
CP027171_1	1.3\|3299051\|23\|CP027171\|CRT	3299051-3299073	23	NC_019202	Pseudomonas aeruginosa plasmid pKLC102, complete sequence	13909-13931	0	1.0
CP027171_1	1.3\|3299051\|23\|CP027171\|CRT	3299051-3299073	23	NC_016138	Pseudomonas aeruginosa plasmid pUM505, complete sequence	968-990	0	1.0
CP027171_1	1.1\|3298953\|23\|CP027171\|CRT	3298953-3298975	23	NZ_CP030914	Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence	25226-25248	1	0.957
CP027171_1	1.3\|3299051\|23\|CP027171\|CRT	3299051-3299073	23	NZ_CP030914	Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence	25324-25346	2	0.913
CP027171_1	1.3\|3299051\|23\|CP027171\|CRT	3299051-3299073	23	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	399737-399759	4	0.826

1. spacer 1.1|3298953|23|CP027171|CRT matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

cccgatctacctcattcaacccc	CRISPR spacer
cccgatctacctcattcaacccc	Protospacer
***********************

2. spacer 1.1|3298953|23|CP027171|CRT matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

cccgatctacctcattcaacccc	CRISPR spacer
cccgatctacctcattcaacccc	Protospacer
***********************

3. spacer 1.2|3298997|33|CP027171|CRT matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

tgaaatcagcggcaagcaatgcgctttaccgct	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccgct	Protospacer
*********************************

4. spacer 1.2|3298997|33|CP027171|CRT matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 0, identity: 1.0

tgaaatcagcggcaagcaatgcgctttaccgct	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccgct	Protospacer
*********************************

5. spacer 1.2|3298997|33|CP027171|CRT matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

tgaaatcagcggcaagcaatgcgctttaccgct	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccgct	Protospacer
*********************************

6. spacer 1.3|3299051|23|CP027171|CRT matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

acagaatccgccgagtacgccct	CRISPR spacer
acagaatccgccgagtacgccct	Protospacer
***********************

7. spacer 1.3|3299051|23|CP027171|CRT matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

acagaatccgccgagtacgccct	CRISPR spacer
acagaatccgccgagtacgccct	Protospacer
***********************

8. spacer 1.1|3298953|23|CP027171|CRT matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 1, identity: 0.957

cccgatctacctcattcaacccc	CRISPR spacer
cccgatctaccccattcaacccc	Protospacer
***********.***********

9. spacer 1.3|3299051|23|CP027171|CRT matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 2, identity: 0.913

acagaatccgccgagtacgccct	CRISPR spacer
aaaaaatccgccgagtacgccct	Protospacer
* *.*******************

10. spacer 1.3|3299051|23|CP027171|CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 4, identity: 0.826

acagaatccgccgagtacgccct	CRISPR spacer
ggtgaatccgccgagtacgccca	Protospacer
.  *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

301109 : 340542

Acinetobacter_phage(20.0%)

integrase,transposase

attL 324660:324719|attR 342358:344232

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVK15474.1\|301109_302984_+\|integrase	phage integrase family protein	NA	NA	NA	NA
AVK14334.1\|306429_307569_+	bacterial stress family protein	W5SAB9	Pithovirus	1.1e-05	32.4
AVK10580.1\|307847_308039_-	hypothetical protein	NA	NA	NA	NA
AVK10561.1\|308090_308765_+	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	3.9e-06	24.1
AVK11061.1\|308754_309513_+	putative trehalose 6-phosphatase	NA	NA	NA	NA
AVK15540.1\|309505_310600_+	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	8.2e-38	34.4
AVK14918.1\|310599_311547_+	putative aTP/GTP-binding protein	NA	NA	NA	NA
AVK13904.1\|312277_312871_+	bacterial stress family protein	A0A2I7QY07	Vibrio_phage	2.4e-23	37.4
AVK13123.1\|313329_314049_+	tellurium resistance family protein	NA	NA	NA	NA
AVK09600.1\|314096_314546_+	terB	NA	NA	NA	NA
AVK14972.1\|314558_315593_+	integral membrane, TerC family protein	A0A291LBC5	Escherichia_phage	6.5e-69	45.9
AVK12328.1\|315621_316200_+	bacterial stress family protein	K4JRX3	Caulobacter_phage	2.5e-30	39.8
AVK13476.1\|316235_316814_+	bacterial stress family protein	NA	NA	NA	NA
AVK13141.1\|317077_318409_+	hypothetical protein	NA	NA	NA	NA
AVK11646.1\|320956_323923_-	hypothetical protein	A0A1B0V7H9	Salmonella_phage	0.0e+00	96.8
AVK10262.1\|323926_324487_-	resolvase, N terminal domain protein	A0A1B0V7I5	Salmonella_phage	1.8e-57	96.8
324660:324719	attL	NA	NA	NA	NA
AVK12818.1\|324927_326358_-\|transposase	transposase DDE domain protein	NA	NA	NA	NA
AVK13863.1\|326534_327548_-\|integrase	integron integrase family protein	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AVK10885.1\|328544_329384_+	dihydropteroate synthase	NA	NA	NA	NA
AVK12383.1\|329980_330973_-	bacterial TniB family protein	NA	NA	NA	NA
AVK14764.1\|330975_332655_-\|transposase	mu transposase, C-terminal family protein	NA	NA	NA	NA
AVK14178.1\|332821_332983_+	hypothetical protein	NA	NA	NA	NA
AVK14694.1\|333092_334772_+\|transposase	mu transposase, C-terminal family protein	NA	NA	NA	NA
AVK11074.1\|334774_335767_+	bacterial TniB family protein	NA	NA	NA	NA
AVK15185.1\|336363_337203_-	dihydropteroate synthase	NA	NA	NA	NA
AVK15737.1\|337660_338074_-	hypothetical protein	NA	NA	NA	NA
AVK12541.1\|339528_340542_+\|integrase	integron integrase family protein	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
342358:344232	attR	NA	NA	NA	NA

DBSCAN-SWA_2

533479 : 540373

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVK09963.1\|533479_534760_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.4e-97	45.2
AVK11313.1\|534761_536159_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AVK12168.1\|536163_537138_-	glutathione S-transferase, C-terminal domain protein	NA	NA	NA	NA
AVK09649.1\|537225_538209_-	glycosyl transferase family, a/b domain protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.0e-140	73.4
AVK11335.1\|538205_538541_-	sulfur relay, TusE/DsrC/DsvC family protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
AVK12479.1\|538537_538843_-	sulfur relay protein TusB/DsrH	NA	NA	NA	NA
AVK14750.1\|538842_539202_-	sulfur relay protein TusC/DsrF	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
AVK13301.1\|539198_539594_-	dsrE/DsrF-like family protein	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
AVK09856.1\|539704_540373_-	inhibitor of apoptosis-promoting Bax1 family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_3

4435619 : 4455050

Catovirus(25.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVK09689.1\|4435619_4437305_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	3.5e-56	31.4
AVK10982.1\|4437440_4438913_-	betaine aldehyde dehydrogenase	NA	NA	NA	NA
AVK10843.1\|4438973_4439567_-	transcriptional repressor BetI	NA	NA	NA	NA
AVK10060.1\|4439528_4439645_+	putative transcriptional regulator BetI	NA	NA	NA	NA
AVK14306.1\|4439845_4441450_+\|holin	transporter, betaine/carnitine/choline transporter family protein	A0A2I7QNT1	Vibrio_phage	3.5e-21	26.0
AVK11627.1\|4441668_4442847_-\|holin	choline ABC transporter, ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-24	35.1
AVK10632.1\|4442850_4443690_-\|holin	choline ABC transporter, permease protein	NA	NA	NA	NA
AVK09669.1\|4443731_4444670_-\|holin	choline ABC transporter, periplasmic binding family protein	NA	NA	NA	NA
AVK15230.1\|4444926_4445094_-	hypothetical protein	NA	NA	NA	NA
AVK09811.1\|4445133_4446510_+	L-serine ammonia-lyase	NA	NA	NA	NA
AVK13226.1\|4446929_4448033_+	amidotransferase family protein	NA	NA	NA	NA
AVK14590.1\|4448078_4448327_-	hypothetical protein	NA	NA	NA	NA
AVK12214.1\|4448595_4449489_-	lysR substrate binding domain protein	NA	NA	NA	NA
AVK14148.1\|4449596_4450664_+	hypothetical protein	NA	NA	NA	NA
AVK14813.1\|4450637_4451603_-	hypothetical protein	A0A0G2Y6Q1	Acanthamoeba_polyphaga_mimivirus	1.5e-19	33.3
AVK15067.1\|4451608_4452088_-	hypothetical protein	NA	NA	NA	NA
AVK10779.1\|4452138_4453104_-	L-carnitine dehydrogenase	NA	NA	NA	NA
AVK15658.1\|4453154_4454039_-	hypothetical protein	NA	NA	NA	NA
AVK13041.1\|4454111_4455050_-\|holin	choline ABC transporter, periplasmic binding family protein	NA	NA	NA	NA

DBSCAN-SWA_4

5296136 : 5348802

Pseudomonas_phage(24.0%)

tRNA,holin,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVK09740.1\|5296136_5297162_+\|tRNA	tRNA threonylcarbamoyl adenosine modification protein YgjD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
AVK13952.1\|5297240_5297810_-	acyl-phosphate glycerol 3-phosphate acyltransferase	NA	NA	NA	NA
AVK11039.1\|5297893_5298247_+	dihydroneopterin aldolase	NA	NA	NA	NA
AVK14080.1\|5298237_5298780_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AVK13001.1\|5298752_5299985_-	putative RNA and SrmB- binding site of polymerase A family protein	A0A076G5T8	Escherichia_phage	1.6e-77	43.1
AVK13469.1\|5300028_5300535_-	hypothetical protein	NA	NA	NA	NA
AVK12755.1\|5300629_5302183_-	spoVR like family protein	NA	NA	NA	NA
AVK13342.1\|5302179_5303451_-	hypothetical protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
AVK13547.1\|5303551_5305474_-	prkA AAA domain protein	NA	NA	NA	NA
AVK10744.1\|5305495_5305669_+	hypothetical protein	NA	NA	NA	NA
AVK12699.1\|5305752_5306085_-	rhodanese-like domain protein	NA	NA	NA	NA
AVK14681.1\|5306128_5306980_-	bis(5'-nucleosyl)-tetraphosphatase	A0A2R4ALP3	Aeromonas_phage	2.4e-08	44.2
AVK13274.1\|5306979_5307360_-	hypothetical protein	NA	NA	NA	NA
AVK13784.1\|5307396_5308203_-	dimethyladenosine transferase	NA	NA	NA	NA
AVK10428.1\|5308318_5309305_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
AVK10552.1\|5309301_5310516_-	chaperone SurA	NA	NA	NA	NA
AVK11769.1\|5310574_5313358_-	organic solvent tolerance family protein	NA	NA	NA	NA
AVK10520.1\|5313502_5314519_+	phosphotransferase enzyme family protein	NA	NA	NA	NA
AVK15126.1\|5314515_5315190_+	nucleotidyl transferase family protein	NA	NA	NA	NA
AVK15406.1\|5315191_5315950_+	dnaJ domain protein	NA	NA	NA	NA
AVK13283.1\|5315950_5317012_-	hypothetical protein	NA	NA	NA	NA
AVK12694.1\|5317238_5319557_+	sensory box protein	NA	NA	NA	NA
AVK15006.1\|5319605_5320235_+	bacterial regulatory, luxR family protein	NA	NA	NA	NA
AVK14606.1\|5320375_5321398_+	bacterial extracellular solute-binding family protein	NA	NA	NA	NA
AVK14134.1\|5321631_5322741_+	polyamine ABC transporter, ATP-binding family protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
AVK11328.1\|5322796_5323843_+	bacterial extracellular solute-binding family protein	NA	NA	NA	NA
AVK13708.1\|5323957_5325205_+	binding-protein-dependent transport system inner membrane component family protein	NA	NA	NA	NA
AVK11625.1\|5325310_5326141_+	binding-protein-dependent transport system inner membrane component family protein	NA	NA	NA	NA
AVK09883.1\|5326264_5326939_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
AVK11254.1\|5326938_5327757_+	phosphoglycolate phosphatase, bacterial	NA	NA	NA	NA
AVK13981.1\|5327829_5329308_+	anthranilate synthase component I	NA	NA	NA	NA
AVK10722.1\|5329494_5329809_-	pyocin activator PrtN family protein	NA	NA	NA	NA
AVK11430.1\|5329908_5330679_-	repressor protein CI	A0A1B0Z078	Pseudomonas_phage	6.1e-72	59.0
AVK11726.1\|5331136_5331337_+	phage/conjugal plasmid C-4 type zinc finger, TraR family protein	W6ATC1	Enterobacter_phage	3.7e-05	58.3
AVK12471.1\|5331384_5331744_+	hypothetical protein	NA	NA	NA	NA
AVK15055.1\|5332202_5332556_+\|holin	putative holin	B5TK61	Pseudomonas_phage	3.9e-26	53.3
AVK13382.1\|5332577_5333093_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
AVK13080.1\|5333089_5333647_+\|plate	phage baseplate assembly V family protein	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
AVK11567.1\|5333799_5334126_+	lysozyme family protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
AVK10065.1\|5334122_5335010_+\|plate	baseplate J-like family protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
AVK15576.1\|5335128_5335536_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	2.0e-53	70.4
AVK12905.1\|5335537_5337646_+\|tail	phage tail-collar fiber family protein	Q9ZXK6	Pseudomonas_virus	2.6e-218	51.1
AVK13404.1\|5337654_5338095_+\|tail	putative tail fiber assembly	NA	NA	NA	NA
AVK13678.1\|5338137_5339298_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.4
AVK14545.1\|5339310_5339814_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
AVK14294.1\|5339828_5340173_+	mu-like prophage FluMu gp41 family protein	NA	NA	NA	NA
AVK13614.1\|5340354_5342580_+\|tail	putative tail length determinator protein	NA	NA	NA	NA
AVK11926.1\|5342589_5343462_+	phage P2 GpU family protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-75	51.7
AVK11298.1\|5343469_5343643_+	phage Tail Protein X family protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	6.0e-12	58.9
AVK12801.1\|5343700_5344690_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	3.7e-106	55.8
AVK13732.1\|5344722_5345352_+	chitinase class I family protein	A0A125RNP1	Pseudomonas_phage	3.2e-87	78.5
AVK09816.1\|5345348_5345711_+	hypothetical protein	H2BDA0	Pseudomonas_phage	6.5e-16	48.7
AVK09578.1\|5345779_5345965_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.1e-15	70.5
AVK15246.1\|5346312_5346918_+	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.1e-75	66.3
AVK09625.1\|5346919_5347969_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
AVK15262.1\|5347965_5348802_+	indole-3-glycerol phosphate synthase family protein	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_5

6086852 : 6095881

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVK14393.1\|6086852_6087488_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-40	52.3
AVK10090.1\|6087533_6088427_+	biotin-lipoyl like family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
AVK14700.1\|6088531_6089536_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
AVK15897.1\|6089962_6090286_-	ferredoxin-1	NA	NA	NA	NA
AVK14740.1\|6090352_6092893_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	2.4e-24	22.1
AVK15174.1\|6092899_6093064_+	putative TolB-like translocation domain protein	NA	NA	NA	NA
AVK12626.1\|6093045_6094053_-	WD40-like Beta Propeller Repeat family protein	NA	NA	NA	NA
AVK13977.1\|6094200_6094707_+	competence/damage-inducible CinA C-terminal domain protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
AVK12436.1\|6094840_6095881_+	protein RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

Anti-CRISPR protein detection

Acr_ID: CP027171.1|AVK14881.1|3351692_3352085_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP027171.1|AVK14881.1|3351692_3352085_+|hypothetical-protein

3351692_3352085_+

130 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|3	0.4251968503937008	0.9307692307692308	0.8785714285714286

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027171

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information