CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP027134	Escherichia coli strain AR_0372 chromosome, complete genome	3 crisprs	c2c9_V-U4,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,csa3	14	12
CP027132	Escherichia coli strain AR_0372 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
CP027133	Escherichia coli strain AR_0372 plasmid unnamed4	0 crisprs	cas14j	0	1
CP027130	Escherichia coli strain AR_0372 plasmid unnamed1, complete sequence	0 crisprs	NA	0	2
CP027129	Escherichia coli strain AR_0372 plasmid unnamed5	0 crisprs	NA	0	1
CP027131	Escherichia coli strain AR_0372 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027134_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027134_1

599552-599701

Orphan

Consensus_repeat	Method
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027134_1

>merge|CP027134|1|599552-599701|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>CP027134|1|1|599552-599701|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTG
CGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP027134.1\|AVJ72589.1\|606503_607823_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
CP027134.1\|AVJ72240.1\|594833_596030_+\|inner-membrane-protein-YjgN	unknown	unknown	gnl\|CDD\|226719
CP027134.1\|AVJ71711.1\|596085_598941_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
CP027134.1\|AVJ68685.1\|601473_601602_-\|hypothetical-protein	unknown	unknown	unknown
CP027134.1\|AVJ69240.1\|590283_590736_+\|toxin-antitoxin-biofilm-protein-TabA	unknown	unknown	gnl\|CDD\|225345
CP027134.1\|AVJ72723.1\|607885_608650_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
CP027134.1\|AVJ68626.1\|599737_601249_-\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP027134.1\|AVJ73523.1\|601608_602616_+\|lipopolysaccharide-export-system-permease-protein-LptF	unknown	unknown	gnl\|CDD\|185075
CP027134.1\|AVJ73579.1\|588761_589475_-\|enoyl-(Acyl-carrier)-reductase-family-protein	unknown	unknown	gnl\|CDD\|183714
CP027134.1\|AVJ73314.1\|590858_592454_+\|hypothetical-protein	unknown	unknown	unknown
CP027134.1\|AVJ71900.1\|602615_603698_+\|lipopolysaccharide-export-system-permease-protein-LptG	unknown	unknown	gnl\|CDD\|237900
CP027134.1\|AVJ72090.1\|593675_594092_+\|regulator-of-ribonuclease-activity-B	unknown	unknown	gnl\|CDD\|236876
CP027134.1\|AVJ71065.1\|592509_593514_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
CP027134.1\|AVJ72739.1\|609921_610485_+\|carbohydrate-kinase,-thermoresistant-glucokinase-family-protein	unknown	unknown	gnl\|CDD\|182097
CP027134.1\|AVJ69069.1\|605438_606437_-\|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein	unknown	unknown	gnl\|CDD\|380489
CP027134.1\|AVJ71205.1\|598940_599384_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
CP027134.1\|AVJ69670.1\|608673_609705_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
CP027134.1\|AVJ69114.1\|594137_594611_-\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|366181
CP027134.1\|AVJ70519.1\|603858_605361_-\|AAA-like-domain-protein	unknown	unknown	gnl\|CDD\|283518
CP027134.1\|AVJ70227.1\|589545_590139_+\|bacterial-regulatory,-tetR-family-protein	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
CP027134.1\|AVJ72589.1\|606503_607823_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP027134.1\|AVJ72240.1\|594833_596030_+\|inner-membrane-protein-YjgN	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	3.05031e-150
CP027134.1\|AVJ71711.1\|596085_598941_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
CP027134.1\|AVJ69670.1\|608673_609705_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
CP027134.1\|AVJ69240.1\|590283_590736_+\|toxin-antitoxin-biofilm-protein-TabA	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.64234e-69
CP027134.1\|AVJ72723.1\|607885_608650_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
CP027134.1\|AVJ68626.1\|599737_601249_-\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP027134.1\|AVJ73523.1\|601608_602616_+\|lipopolysaccharide-export-system-permease-protein-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
CP027134.1\|AVJ73579.1\|588761_589475_-\|enoyl-(Acyl-carrier)-reductase-family-protein	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	5.2218e-149
CP027134.1\|AVJ71900.1\|602615_603698_+\|lipopolysaccharide-export-system-permease-protein-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP027134.1\|AVJ72090.1\|593675_594092_+\|regulator-of-ribonuclease-activity-B	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
CP027134.1\|AVJ71065.1\|592509_593514_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
CP027134.1\|AVJ72739.1\|609921_610485_+\|carbohydrate-kinase,-thermoresistant-glucokinase-family-protein	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
CP027134.1\|AVJ69069.1\|605438_606437_-\|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
CP027134.1\|AVJ71205.1\|598940_599384_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
CP027134.1\|AVJ69114.1\|594137_594611_-\|acetyltransferase-domain-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.70686e-18
CP027134.1\|AVJ70519.1\|603858_605361_-\|AAA-like-domain-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
CP027134.1\|AVJ70227.1\|589545_590139_+\|bacterial-regulatory,-tetR-family-protein	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.07846e-09

>CP027134.1|AVJ71205.1|598940_599384_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>CP027134.1|AVJ71711.1|596085_598941_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADNKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>CP027134.1|AVJ72240.1|594833_596030_+|inner-membrane-protein-YjgN
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKRFWWVTFFLPILMAIGMGAVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLARISRGIMPSLPFL
>CP027134.1|AVJ69114.1|594137_594611_-|acetyltransferase-domain-protein
MRRLTQQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEFDGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>CP027134.1|AVJ72090.1|593675_594092_+|regulator-of-ribonuclease-activity-B
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>CP027134.1|AVJ71065.1|592509_593514_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>CP027134.1|AVJ73314.1|590858_592454_+|hypothetical-protein
MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSNRSNEAGRNMMAHIESSSYIKNNDGSEIMKFVMNNPEGERADLSKVEIEITLSTITTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDESSLHLITNKVLACYQREANKEVALLLNNHQLNWKDAIDYNELLEKPLASTLEKIKKEHLLLMPHVCDDTIPYLLGEGGILEEINGLKTLHDTKIDSGTEGNDEINNIKINLSNILIDSLDDAKINLEKVIDSMLETFFKLPYINDVKILEWCFNQSMQYSDDTTKIKHARSVIDHIDFNCDQSKIAETLFFNLNKEPYKNSPELQELIWEKLVVYVNDFNLSNQEKSRLILRLFDDVKLVFDKVPLSILVNDIFLKDFFMKQPDFAKWYFYQLLKSYEGEQMYLNELGYVYGDEEKTKEIVNKLPGYVVKIFEEKIDNELKIRTRMMEILRDEQINIYEYINEKQLEKLNPQGNLRIAIEKFGWNNKPITA
>CP027134.1|AVJ69240.1|590283_590736_+|toxin-antitoxin-biofilm-protein-TabA
MIIGNIHNLQPWLPQELRQAIEHIKAHVTPETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLRGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>CP027134.1|AVJ70227.1|589545_590139_+|bacterial-regulatory,-tetR-family-protein
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKVGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE
>CP027134.1|AVJ73579.1|588761_589475_-|enoyl-(Acyl-carrier)-reductase-family-protein
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAEHLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>CP027134.1|AVJ68626.1|599737_601249_-|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>CP027134.1|AVJ68685.1|601473_601602_-|hypothetical-protein
MTEEDQKQDEEYRQLAFERLPHQISYDYHFKYARKNSSFAGF
>CP027134.1|AVJ73523.1|601608_602616_+|lipopolysaccharide-export-system-permease-protein-LptF
MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>CP027134.1|AVJ71900.1|602615_603698_+|lipopolysaccharide-export-system-permease-protein-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>CP027134.1|AVJ70519.1|603858_605361_-|AAA-like-domain-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDETHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>CP027134.1|AVJ69069.1|605438_606437_-|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>CP027134.1|AVJ72589.1|606503_607823_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIVFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>CP027134.1|AVJ72723.1|607885_608650_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>CP027134.1|AVJ69670.1|608673_609705_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>CP027134.1|AVJ72739.1|609921_610485_+|carbohydrate-kinase,-thermoresistant-glucokinase-family-protein
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE

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Crispr_ID: CP027134_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027134_2

3987561-3988138

TypeI-E

I-E

Consensus_repeat	Method
CGATTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
TTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
TTTATCCCCGCTGGCGCGGGGAACAC	CRT

9 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP027134_2

>merge|CP027134|2|3987561-3988138|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACGTCAATAGGCGGCGTCCCGTAGCCGTCCCCTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTTGAGGTCGATAAGTACGAACGGTTTCCCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGCCTGCTCCAGCGTCACTCCCTGCCCCTCGATTTATCCCCGCTGGCGCGGGGAACACTTCTGATACGTACTGAGGCCGGTTGTGATACGCGATTTATCCCCGCTGGCGCGGGGAACACTAACCCCCAATGAAGTTAATAAAGTCTATGGCCGATTTATCCCCGCTGGCGCGGGGAACACATGAGATTAAAATACTCAGTACTCTTACTCGCCGATTTATCCCCGCTGGCGCGGGGAACACCAGCGTGGCGCGATAAAGCAATGTGTCTGGCTCGATTTATCCCCGCTGGCGCGGGGAACACCAGAGGCAACCGACGCGGATTCAGTAGGAAAGCGATTTATCCCCGCTGGCGCGGGGAACACCGATAGACACTTTGCGGTCATTGTCTATTCGGCGATTTATCCCCGCTGGCGCGGGGAACAC

>CP027134|2|1|3987561-3988138|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTGAGGTCGATAAGTACGAACGGTTTCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGCCTGCTCCAGCGTCACTCCCTGCCCCT
CGATTTATCCCCGCTGGCGCGGGGAACAC	TTCTGATACGTACTGAGGCCGGTTGTGATACG
CGATTTATCCCCGCTGGCGCGGGGAACAC	TAACCCCCAATGAAGTTAATAAAGTCTATGGC
CGATTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATTAAAATACTCAGTACTCTTACTCGC
CGATTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTGGCGCGATAAAGCAATGTGTCTGGCT
CGATTTATCCCCGCTGGCGCGGGGAACAC	CAGAGGCAACCGACGCGGATTCAGTAGGAAAG
CGATTTATCCCCGCTGGCGCGGGGAACAC	CGATAGACACTTTGCGGTCATTGTCTATTCGG
CGATTTATCCCCGCTGGCGCGGGGAACAC

>CP027134|2|2|3987564-3988138|CRISPRCasFinder
TTTATCCCCGCTGACGCGGGGAACAC	GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTTCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GTTGAGGTCGATAAGTACGAACGGTTTCCCTGCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GATCGCCTGCTCCAGCGTCACTCCCTGCCCCTCGA
TTTATCCCCGCTGGCGCGGGGAACAC	TTCTGATACGTACTGAGGCCGGTTGTGATACGCGA
TTTATCCCCGCTGGCGCGGGGAACAC	TAACCCCCAATGAAGTTAATAAAGTCTATGGCCGA
TTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATTAAAATACTCAGTACTCTTACTCGCCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTGGCGCGATAAAGCAATGTGTCTGGCTCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CAGAGGCAACCGACGCGGATTCAGTAGGAAAGCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CGATAGACACTTTGCGGTCATTGTCTATTCGGCGA
TTTATCCCCGCTGGCGCGGGGAACAC

>CP027134|2|1|3987564-3988138|CRT
TTTATCCCCGCTGACGCGGGGAACAC	GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTTCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GTTGAGGTCGATAAGTACGAACGGTTTCCCTGCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GATCGCCTGCTCCAGCGTCACTCCCTGCCCCTCGA
TTTATCCCCGCTGGCGCGGGGAACAC	TTCTGATACGTACTGAGGCCGGTTGTGATACGCGA
TTTATCCCCGCTGGCGCGGGGAACAC	TAACCCCCAATGAAGTTAATAAAGTCTATGGCCGA
TTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATTAAAATACTCAGTACTCTTACTCGCCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTGGCGCGATAAAGCAATGTGTCTGGCTCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CAGAGGCAACCGACGCGGATTCAGTAGGAAAGCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CGATAGACACTTTGCGGTCATTGTCTATTCGGCGA
TTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP027134.1\|AVJ71610.1\|3989777_3990074_+\|hypothetical-protein	unknown	unknown	unknown
CP027134.1\|AVJ71472.1\|3979373_3980135_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP027134.1\|AVJ68850.1\|3983852_3985280_-\|sulfate-adenylyltransferase,-large-subunit	unknown	unknown	gnl\|CDD\|235349
CP027134.1\|AVJ68673.1\|3985281_3986190_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP027134.1\|AVJ72970.1\|3981640_3982351_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP027134.1\|AVJ69737.1\|3991903_3992440_-\|CRISPR-associated-protein-CasB/Cse2	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP027134.1\|AVJ69259.1\|3982874_3983198_-\|inner-membrane-protein-YgbE	unknown	unknown	gnl\|CDD\|371891
CP027134.1\|AVJ68594.1\|3990076_3990823_-\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP027134.1\|AVJ71431.1\|3990833_3991889_-\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP027134.1\|AVJ70533.1\|3988524_3989448_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP027134.1\|AVJ69839.1\|3982369_3982681_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP027134.1\|AVJ70239.1\|3986441_3987479_+\|M42-glutamyl-aminopeptidase-family-protein	unknown	unknown	gnl\|CDD\|182299
CP027134.1\|AVJ69844.1\|3983247_3983853_-\|adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP027134.1\|AVJ71830.1\|3981161_3981641_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP027134.1\|AVJ71471.1\|3988234_3988405_-\|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E	cas2	cd09755_cas2_CAS-I-E	gnl\|CDD\|236930
CP027134.1\|AVJ70823.1\|3997407_3998142_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP027134.1\|AVJ72308.1\|3992436_3993999_-\|CRISPR-associated-protein-CasA/Cse1	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP027134.1\|AVJ68825.1\|3980115_3981165_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|234884
CP027134.1\|AVJ70423.1\|3994096_3996754_-\|CRISPR-associated-endonuclease-Cas3-HD	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP027134.1\|AVJ72548.1\|3989444_3989768_-\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795

Protein	Function_ID	Function_description	E-value
CP027134.1\|AVJ69737.1\|3991903_3992440_-\|CRISPR-associated-protein-CasB/Cse2	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.72866e-28
CP027134.1\|AVJ71472.1\|3979373_3980135_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP027134.1\|AVJ68850.1\|3983852_3985280_-\|sulfate-adenylyltransferase,-large-subunit	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP027134.1\|AVJ68673.1\|3985281_3986190_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP027134.1\|AVJ72970.1\|3981640_3982351_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
CP027134.1\|AVJ69259.1\|3982874_3983198_-\|inner-membrane-protein-YgbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP027134.1\|AVJ68594.1\|3990076_3990823_-\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.25317e-47
CP027134.1\|AVJ71431.1\|3990833_3991889_-\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.45078e-156
CP027134.1\|AVJ70533.1\|3988524_3989448_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
CP027134.1\|AVJ69839.1\|3982369_3982681_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP027134.1\|AVJ70239.1\|3986441_3987479_+\|M42-glutamyl-aminopeptidase-family-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP027134.1\|AVJ69844.1\|3983247_3983853_-\|adenylylsulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP027134.1\|AVJ71830.1\|3981161_3981641_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.39634e-105
CP027134.1\|AVJ71471.1\|3988234_3988405_-\|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.06656e-33
CP027134.1\|AVJ70823.1\|3997407_3998142_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.91666e-137
CP027134.1\|AVJ72308.1\|3992436_3993999_-\|CRISPR-associated-protein-CasA/Cse1	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP027134.1\|AVJ68825.1\|3980115_3981165_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP027134.1\|AVJ70423.1\|3994096_3996754_-\|CRISPR-associated-endonuclease-Cas3-HD	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP027134.1\|AVJ72548.1\|3989444_3989768_-\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.06506e-41

>CP027134.1|AVJ70239.1|3986441_3987479_+|M42-glutamyl-aminopeptidase-family-protein
MFSALRHRTAALALGVCFILPVHASSAKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP027134.1|AVJ68673.1|3985281_3986190_-|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP027134.1|AVJ68850.1|3983852_3985280_-|sulfate-adenylyltransferase,-large-subunit
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP027134.1|AVJ69844.1|3983247_3983853_-|adenylylsulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP027134.1|AVJ69259.1|3982874_3983198_-|inner-membrane-protein-YgbE
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP027134.1|AVJ69839.1|3982369_3982681_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP027134.1|AVJ72970.1|3981640_3982351_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP027134.1|AVJ71830.1|3981161_3981641_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP027134.1|AVJ68825.1|3980115_3981165_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP027134.1|AVJ71472.1|3979373_3980135_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>CP027134.1|AVJ71471.1|3988234_3988405_-|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E
MIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGVRLVSFLPVDNQ
>CP027134.1|AVJ70533.1|3988524_3989448_-|CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP027134.1|AVJ72548.1|3989444_3989768_-|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E
MEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP027134.1|AVJ71610.1|3989777_3990074_+|hypothetical-protein
MAFARFTNCWIRPQVETKGLSGTQLWRKWSAFDGENITFRRAFLRQDKKAKRPLEFFPTIKKLPFFAARKKIPQPLMHYIFTATHQMQQLRRQKLAGM
>CP027134.1|AVJ68594.1|3990076_3990823_-|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDASYRLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP027134.1|AVJ71431.1|3990833_3991889_-|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECVSFDVMNKQGSMKDVLDFICA
>CP027134.1|AVJ69737.1|3991903_3992440_-|CRISPR-associated-protein-CasB/Cse2
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDDLLRQLRRAVKLLNGSVNLISLAEDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>CP027134.1|AVJ72308.1|3992436_3993999_-|CRISPR-associated-protein-CasA/Cse1
MNSFSLLTTPWLPVRYKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLESEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLDKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRHIEEGQDADELLSKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQNAKAAREKKQEAAE
>CP027134.1|AVJ70423.1|3994096_3996754_-|CRISPR-associated-endonuclease-Cas3-HD
MTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLTDYFRQLGFADTEQAAQFFAWLLCWHDTGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWHHYLSEYEELLPSSSLSPRKLKRVMEMWMPITTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLVQAQNALTVFPLKAKVAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQCDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDSSQRAGKVLICTQVLESSVDCDMDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIASVVKPYANGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRKDPEMANVILVTDDESCGYSAMEGLTGKVG
>CP027134.1|AVJ70823.1|3997407_3998142_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRTNLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: CP027134_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027134_3

4015276-4015914

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CTCGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

10 spacers

The CRISPR arrays of CP027134_3

>merge|CP027134|3|4015276-4015914|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATTCCCGCTGGTGCGGGGAACTCATCAGTGATATCCAACATTGCGGAGCTAAACGCGGTTTATCCCCGCTGGCGCGGGGAACTCACGAACGCGGCACACCAGGGCGTCTCATCGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCGGCACATGCCTGATCATATGTGTAGCAACGGTCGGTTTATCCCCGCTGGCGCGGGGAACTCACGATGTATGACCGGAAAACCTCAGACTGGCGCGGTTTATCCCCGCTGGCGCGGGGAACTCACGATGTATGACCGGAAAACCTCAGACTGGCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCCGCGTTATTTTCCCTGAAAACAATAAAGCTCGGTTTATCCCCGCTGGCGCGGGGAACTCTAATATCCCTGGCGATAATCAACCGGCTTACTCGGTTTATCCCCGCTGGCGCGGGGAACTCGAGAGCGAGGGGAGATTCCGGCAGGGCGTGCACGGTTTATCCCCGCTGGCGCGGGGAACTCGCGGGTATGCTCCGCTCCGTGTTCGACAAACTCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGGTCGCGGGGACGCCACGGGCAGTCAATGTCGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027134|3|3|4015276-4015914|CRISPRCasFinder
TGGTTTATTCCCGCTGGTGCGGGGAACTC	ATCAGTGATATCCAACATTGCGGAGCTAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGAACGCGGCACACCAGGGCGTCTCATCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGCACATGCCTGATCATATGTGTAGCAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGCGTTATTTTCCCTGAAAACAATAAAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAATGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027134|3|2|4015276-4015914|CRT
TGGTTTATTCCCGCTGGTGCGGGGAACTC	ATCAGTGATATCCAACATTGCGGAGCTAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGAACGCGGCACACCAGGGCGTCTCATCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGCACATGCCTGATCATATGTGTAGCAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGCGTTATTTTCCCTGAAAACAATAAAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAATGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027134|3|2|4015640-4015914|PILER-CR
CTCGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTA
CTCGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTG
CACGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAA
CTCGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAAT
GTCGGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
CP027134.1\|AVJ72318.1\|4006182_4007043_-\|electron-transfer-flavodomain-protein	unknown	unknown	gnl\|CDD\|224936
CP027134.1\|AVJ71156.1\|4017385_4018090_+\|repair-family-protein	unknown	unknown	gnl\|CDD\|224429
CP027134.1\|AVJ73450.1\|4018208_4018667_-\|transposase-IS200-like-family-protein	unknown	unknown	gnl\|CDD\|224854
CP027134.1\|AVJ69296.1\|4004734_4005256_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|225511
CP027134.1\|AVJ69279.1\|4007039_4007819_-\|electron-transfer-flavodomain-protein	unknown	unknown	gnl\|CDD\|224997
CP027134.1\|AVJ70663.1\|4005480_4006083_+\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|222853
CP027134.1\|AVJ69821.1\|4022109_4022901_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP027134.1\|AVJ70408.1\|4023633_4025868_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP027134.1\|AVJ70096.1\|4023307_4023556_-\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP027134.1\|AVJ69580.1\|4020244_4021882_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
CP027134.1\|AVJ72168.1\|4004057_4004600_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224865
CP027134.1\|AVJ71295.1\|4025915_4027217_-\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
CP027134.1\|AVJ70761.1\|4013210_4014638_+\|FGGY-family-of-carbohydrate-kinase,-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|212662
CP027134.1\|AVJ71852.1\|4016252_4016924_-\|putative-7-cyano-7-deazaguanosine-(preQ0)-biosynthesis-protein-QueE	unknown	unknown	gnl\|CDD\|275126
CP027134.1\|AVJ71675.1\|4009227_4010682_-\|FAD-binding-domain-protein	unknown	unknown	gnl\|CDD\|223354
CP027134.1\|AVJ69356.1\|4007796_4009113_-\|inner-membrane-metabolite-transport-protein-YgcS	unknown	unknown	gnl\|CDD\|340929
CP027134.1\|AVJ69828.1\|4010751_4011537_-\|KR-domain-protein	unknown	unknown	gnl\|CDD\|187605
CP027134.1\|AVJ70061.1\|4022972_4023284_-\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP027134.1\|AVJ72583.1\|4011855_4013133_+\|inner-membrane-protein-YqcE	unknown	unknown	gnl\|CDD\|349949
CP027134.1\|AVJ71459.1\|4018859_4020158_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
CP027134.1\|AVJ72318.1\|4006182_4007043_-\|electron-transfer-flavodomain-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	8.34461e-89
CP027134.1\|AVJ71156.1\|4017385_4018090_+\|repair-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.15376e-73
CP027134.1\|AVJ73450.1\|4018208_4018667_-\|transposase-IS200-like-family-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.62797e-46
CP027134.1\|AVJ69296.1\|4004734_4005256_+\|transposase-family-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.12866e-05
CP027134.1\|AVJ69279.1\|4007039_4007819_-\|electron-transfer-flavodomain-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.81851e-61
CP027134.1\|AVJ70663.1\|4005480_4006083_+\|integrase-core-domain-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.11886e-43
CP027134.1\|AVJ69821.1\|4022109_4022901_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
CP027134.1\|AVJ70408.1\|4023633_4025868_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP027134.1\|AVJ70096.1\|4023307_4023556_-\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP027134.1\|AVJ69580.1\|4020244_4021882_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP027134.1\|AVJ72168.1\|4004057_4004600_+\|hypothetical-protein	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	7.78219e-84
CP027134.1\|AVJ71295.1\|4025915_4027217_-\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP027134.1\|AVJ70761.1\|4013210_4014638_+\|FGGY-family-of-carbohydrate-kinase,-N-terminal-domain-protein	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.12912e-100
CP027134.1\|AVJ71852.1\|4016252_4016924_-\|putative-7-cyano-7-deazaguanosine-(preQ0)-biosynthesis-protein-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
CP027134.1\|AVJ71675.1\|4009227_4010682_-\|FAD-binding-domain-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.6361e-82
CP027134.1\|AVJ69356.1\|4007796_4009113_-\|inner-membrane-metabolite-transport-protein-YgcS	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.42914e-50
CP027134.1\|AVJ69828.1\|4010751_4011537_-\|KR-domain-protein	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.07958e-139
CP027134.1\|AVJ70061.1\|4022972_4023284_-\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.93561e-68
CP027134.1\|AVJ72583.1\|4011855_4013133_+\|inner-membrane-protein-YqcE	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.01506e-28
CP027134.1\|AVJ71459.1\|4018859_4020158_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>CP027134.1|AVJ70761.1|4013210_4014638_+|FGGY-family-of-carbohydrate-kinase,-N-terminal-domain-protein
MVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKLLPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYNAMNKGIFKELTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP027134.1|AVJ72583.1|4011855_4013133_+|inner-membrane-protein-YqcE
MQHNSYRRWIALAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>CP027134.1|AVJ69828.1|4010751_4011537_-|KR-domain-protein
MSIESLNALSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILINNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP027134.1|AVJ71675.1|4009227_4010682_-|FAD-binding-domain-protein
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>CP027134.1|AVJ69356.1|4007796_4009113_-|inner-membrane-metabolite-transport-protein-YgcS
MDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP027134.1|AVJ69279.1|4007039_4007819_-|electron-transfer-flavodomain-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLELIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAVGKAAIIRKTVAAESPAMQCLQLARAEQQRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>CP027134.1|AVJ72318.1|4006182_4007043_-|electron-transfer-flavodomain-protein
MNIAIVTINQENAATASWQAAQDFSGCTLAHWKIEPQPAVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHAECQ
>CP027134.1|AVJ70663.1|4005480_4006083_+|integrase-core-domain-protein
MQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSALADRGLVQSMSRKGNCLDNAVMENFFGHLKEEMYYRRDYRNVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEHQKAG
>CP027134.1|AVJ69296.1|4004734_4005256_+|transposase-family-protein
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPRVAARFNIPSHNTVKNWIKGYRKSGNEAFIRRRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKKRQELEKKRKSSGA
>CP027134.1|AVJ72168.1|4004057_4004600_+|hypothetical-protein
MIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP027134.1|AVJ71852.1|4016252_4016924_-|putative-7-cyano-7-deazaguanosine-(preQ0)-biosynthesis-protein-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP027134.1|AVJ71156.1|4017385_4018090_+|repair-family-protein
MQIAVLIVPTTKDETIEKYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSEIESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSDGGGSSGGGGASGRW
>CP027134.1|AVJ73450.1|4018208_4018667_-|transposase-IS200-like-family-protein
MGNEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKSVRILEAECCADHIHMLVEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK
>CP027134.1|AVJ71459.1|4018859_4020158_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP027134.1|AVJ69580.1|4020244_4021882_-|CTP-synthase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP027134.1|AVJ69821.1|4022109_4022901_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP027134.1|AVJ70061.1|4022972_4023284_-|mRNA-interferase-MazF
MGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP027134.1|AVJ70096.1|4023307_4023556_-|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP027134.1|AVJ70408.1|4023633_4025868_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRECVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVMANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP027134.1|AVJ71295.1|4025915_4027217_-|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDNPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLDSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVAGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027134_2	2.6\|3987895\|32\|CP027134\|PILER-CR	3987895-3987926	32	NZ_CP037443	Klebsiella sp. PO552 plasmid p2, complete sequence	42679-42710	1	0.969
CP027134_2	2.15\|3987895\|35\|CP027134\|CRISPRCasFinder,CRT	3987895-3987929	35	NZ_CP037443	Klebsiella sp. PO552 plasmid p2, complete sequence	42676-42710	2	0.943
CP027134_3	3.2\|4015366\|32\|CP027134\|CRISPRCasFinder,CRT	4015366-4015397	32	KT898133	Aeromonas phage phiARM81ld, complete genome	45655-45686	2	0.938
CP027134_3	3.14\|4015854\|30\|CP027134\|PILER-CR	4015854-4015883	30	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	320389-320418	5	0.833
CP027134_3	3.8\|4015732\|32\|CP027134\|CRISPRCasFinder,CRT	4015732-4015763	32	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	37866-37897	6	0.812
CP027134_3	3.12\|4015732\|30\|CP027134\|PILER-CR	4015732-4015761	30	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	37868-37897	6	0.8
CP027134_2	2.3\|3987712\|32\|CP027134\|PILER-CR	3987712-3987743	32	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	39410-39441	7	0.781
CP027134_3	3.6\|4015610\|32\|CP027134\|CRISPRCasFinder,CRT	4015610-4015641	32	KC821619	Cellulophaga phage phi18:1, complete genome	6924-6955	7	0.781
CP027134_3	3.6\|4015610\|32\|CP027134\|CRISPRCasFinder,CRT	4015610-4015641	32	KC821627	Cellulophaga phage phi18:2, complete genome	6924-6955	7	0.781
CP027134_3	3.14\|4015854\|30\|CP027134\|PILER-CR	4015854-4015883	30	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	107507-107536	7	0.767
CP027134_3	3.14\|4015854\|30\|CP027134\|PILER-CR	4015854-4015883	30	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	199281-199310	7	0.767
CP027134_2	2.2\|3987651\|32\|CP027134\|PILER-CR	3987651-3987682	32	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	347859-347890	8	0.75
CP027134_2	2.5\|3987834\|32\|CP027134\|PILER-CR	3987834-3987865	32	KC847113	Bacillus phage PBP180, complete sequence	100-131	8	0.75
CP027134_3	3.2\|4015366\|32\|CP027134\|CRISPRCasFinder,CRT	4015366-4015397	32	MN901520	Halorubrum coriense virus Hardycor2, complete genome	16524-16555	8	0.75
CP027134_3	3.7\|4015671\|32\|CP027134\|CRISPRCasFinder,CRT	4015671-4015702	32	MN855878	Bacteriophage sp. isolate 336, complete genome	5171-5202	8	0.75
CP027134_3	3.10\|4015854\|32\|CP027134\|CRISPRCasFinder,CRT	4015854-4015885	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	107507-107538	8	0.75
CP027134_3	3.10\|4015854\|32\|CP027134\|CRISPRCasFinder,CRT	4015854-4015885	32	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	199281-199312	8	0.75
CP027134_2	2.1\|3987590\|32\|CP027134\|PILER-CR	3987590-3987621	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	11267-11298	9	0.719
CP027134_2	2.5\|3987834\|32\|CP027134\|PILER-CR	3987834-3987865	32	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	20152-20183	9	0.719
CP027134_2	2.5\|3987834\|32\|CP027134\|PILER-CR	3987834-3987865	32	NC_049837	Klebsiella phage vB_KpnS_Alina, complete genome	13583-13614	9	0.719
CP027134_2	2.6\|3987895\|32\|CP027134\|PILER-CR	3987895-3987926	32	NZ_CP019063	Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence	287201-287232	9	0.719
CP027134_3	3.6\|4015610\|32\|CP027134\|CRISPRCasFinder,CRT	4015610-4015641	32	NZ_CP020483	Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence	383-414	9	0.719
CP027134_2	2.5\|3987834\|32\|CP027134\|PILER-CR	3987834-3987865	32	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	179050-179081	10	0.688
CP027134_2	2.14\|3987834\|35\|CP027134\|CRISPRCasFinder,CRT	3987834-3987868	35	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	20152-20186	12	0.657

1. spacer 2.6|3987895|32|CP027134|PILER-CR matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 1, identity: 0.969

atgagattaaaatactcagtactcttactcgc	CRISPR spacer
atgagattaaaatactcagcactcttactcgc	Protospacer
*******************.************

2. spacer 2.15|3987895|35|CP027134|CRISPRCasFinder,CRT matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.943

atgagattaaaatactcagtactcttactcgccga	CRISPR spacer
atgagattaaaatactcagcactcttactcgccgt	Protospacer
*******************.**************

3. spacer 3.2|4015366|32|CP027134|CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

acgaacgcggcacaccagggcgtctcatcgtc	CRISPR spacer
acgaacgcggcgcaccagggcgtctcgtcgtc	Protospacer
***********.**************.*****

4. spacer 3.14|4015854|30|CP027134|PILER-CR matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 5, identity: 0.833

aaggtcgcggggacgccacgggcagtcaat	CRISPR spacer
caggtcggcgggacgccacgggcagtcgac	Protospacer
 ******  ******************.*.

5. spacer 3.8|4015732|32|CP027134|CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

gagagcgaggggagattccggcagggcgtgca	CRISPR spacer
aatcgtgaggggatcttccggcagggcgtgca	Protospacer
.*  *.*******  *****************

6. spacer 3.12|4015732|30|CP027134|PILER-CR matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.8

gagagcgaggggagattccggcagggcgtg	CRISPR spacer
aatcgtgaggggatcttccggcagggcgtg	Protospacer
.*  *.*******  ***************

7. spacer 2.3|3987712|32|CP027134|PILER-CR matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 7, identity: 0.781

gatcgcctgctccagcgtcactccctgcccct	CRISPR spacer
gttcgcctgctccagcgtcaatgccccctccc	Protospacer
* ****************** * **. *.**.

8. spacer 3.6|4015610|32|CP027134|CRISPRCasFinder,CRT matches to KC821619 (Cellulophaga phage phi18:1, complete genome) position: , mismatch: 7, identity: 0.781

gccgcgttattttccctgaaaacaataaagct	CRISPR spacer
gcggttttattttccctgaaaagaaaaaagag	Protospacer
** *. **************** ** ****

9. spacer 3.6|4015610|32|CP027134|CRISPRCasFinder,CRT matches to KC821627 (Cellulophaga phage phi18:2, complete genome) position: , mismatch: 7, identity: 0.781

gccgcgttattttccctgaaaacaataaagct	CRISPR spacer
gcggttttattttccctgaaaagaaaaaagag	Protospacer
** *. **************** ** ****

10. spacer 3.14|4015854|30|CP027134|PILER-CR matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 7, identity: 0.767

aaggtcgcggggacgccacgggcagtcaat	CRISPR spacer
gatttcgctgggaccccacgggcagtcgac	Protospacer
.*  **** ***** ************.*.

11. spacer 3.14|4015854|30|CP027134|PILER-CR matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaggtcgcggggacgccacgggcagtcaat	CRISPR spacer
gatttcgctgggaccccacgggcagtcgac	Protospacer
.*  **** ***** ************.*.

12. spacer 2.2|3987651|32|CP027134|PILER-CR matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gttgaggtcgataagtacgaacggtttccctg	CRISPR spacer
gaagaggtcgatgagtacgaatggttacagcg	Protospacer
*  *********.********.**** *  .*

13. spacer 2.5|3987834|32|CP027134|PILER-CR matches to KC847113 (Bacillus phage PBP180, complete sequence) position: , mismatch: 8, identity: 0.75

taacccccaatgaagttaataaagtctatggc	CRISPR spacer
ttctctctaatgtagttaataaagtcgatggt	Protospacer
*  .*.*.**** ************* ****.

14. spacer 3.2|4015366|32|CP027134|CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

acgaacgcggcacaccagggcgtctcatcgtc--	CRISPR spacer
ccgaacgcggcacacccgagcg--tcggcggcgg	Protospacer
 *************** *.***  **. ** *

15. spacer 3.7|4015671|32|CP027134|CRISPRCasFinder,CRT matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

taatatccc----tggcgataatcaaccggcttact	CRISPR spacer
----acgccatggtggcgataatcatcctgcttact	Protospacer
    *. **    ************ ** *******

16. spacer 3.10|4015854|32|CP027134|CRISPRCasFinder,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

aaggtcgcggggacgccacgggcagtcaatgt	CRISPR spacer
gatttcgctgggaccccacgggcagtcgacgg	Protospacer
.*  **** ***** ************.*.*

17. spacer 3.10|4015854|32|CP027134|CRISPRCasFinder,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aaggtcgcggggacgccacgggcagtcaatgt	CRISPR spacer
gatttcgctgggaccccacgggcagtcgacgg	Protospacer
.*  **** ***** ************.*.*

18. spacer 2.1|3987590|32|CP027134|PILER-CR matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

gtcaataggcggcgtcccgtagccgtcccctt	CRISPR spacer
gtgctctggcggcgtgccgtagccatccccga	Protospacer
**   . ******** ********.*****

19. spacer 2.5|3987834|32|CP027134|PILER-CR matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taacccccaatgaagttaataaagtctatggc	CRISPR spacer
ctttaggcaatgaagttaaaaaattctatggc	Protospacer
.  .   ************ *** ********

20. spacer 2.5|3987834|32|CP027134|PILER-CR matches to NC_049837 (Klebsiella phage vB_KpnS_Alina, complete genome) position: , mismatch: 9, identity: 0.719

taacccccaatgaagttaataaagtctatggc	CRISPR spacer
acattggcgatgaagttaataacgtgtatggc	Protospacer
  *..  *.************* ** ******

21. spacer 2.6|3987895|32|CP027134|PILER-CR matches to NZ_CP019063 (Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

atgagattaaaatactcagtactcttactcgc	CRISPR spacer
cgggaattaacatactcggtactcttaccgtc	Protospacer
  *..***** ******.**********.  *

22. spacer 3.6|4015610|32|CP027134|CRISPRCasFinder,CRT matches to NZ_CP020483 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence) position: , mismatch: 9, identity: 0.719

gccgcgttattttccctgaaaacaataaagct	CRISPR spacer
tagcctttattttcactcaaaacaataaaagt	Protospacer
    * ******** ** ***********. *

23. spacer 2.5|3987834|32|CP027134|PILER-CR matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 10, identity: 0.688

taacccccaatgaagttaataaagtctatggc	CRISPR spacer
gtagattcaatgaagttaataaaaactatgat	Protospacer
  *  ..****************. *****..

24. spacer 2.14|3987834|35|CP027134|CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

taacccccaatgaagttaataaagtctatggccga	CRISPR spacer
ctttaggcaatgaagttaaaaaattctatggcgat	Protospacer
.  .   ************ *** ******** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

596085 : 629517

Shigella_phage(25.0%)

holin,integrase,tRNA,transposase

attL 621534:621547|attR 626856:626869

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ71711.1\|596085_598941_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7
AVJ71205.1\|598940_599384_-	DNA polymerase III subunit chi	NA	NA	NA	NA
AVJ68626.1\|599737_601249_-	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
AVJ68685.1\|601473_601602_-	hypothetical protein	NA	NA	NA	NA
AVJ73523.1\|601608_602616_+	lipopolysaccharide export system permease protein LptF	NA	NA	NA	NA
AVJ71900.1\|602615_603698_+	lipopolysaccharide export system permease protein LptG	NA	NA	NA	NA
AVJ70519.1\|603858_605361_-	AAA-like domain protein	A0A248XCZ8	Klebsiella_phage	1.4e-83	43.9
AVJ69069.1\|605438_606437_-	periplasmic binding and sugar binding domain of LacI family protein	NA	NA	NA	NA
AVJ72589.1\|606503_607823_-	gnt-II system L-idonate transporter	NA	NA	NA	NA
AVJ72723.1\|607885_608650_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
AVJ69670.1\|608673_609705_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
AVJ72739.1\|609921_610485_+	carbohydrate kinase, thermoresistant glucokinase family protein	NA	NA	NA	NA
AVJ71069.1\|610488_611508_-	zinc-binding dehydrogenase family protein	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.7
AVJ72924.1\|612048_613239_+\|integrase	phage integrase family protein	B7SYF8	Stenotrophomonas_phage	9.4e-72	40.1
AVJ70174.1\|613639_613882_-	putative pstB	NA	NA	NA	NA
AVJ73146.1\|614005_614341_-	sulfatase family protein	NA	NA	NA	NA
AVJ71188.1\|614394_614742_-	putative lipoprotein	NA	NA	NA	NA
AVJ73024.1\|615894_616038_+	hypothetical protein	NA	NA	NA	NA
AVJ69827.1\|616065_617394_-\|transposase	insertion element 4 transposase N-terminal family protein	NA	NA	NA	NA
AVJ73495.1\|617705_617852_-	hypothetical protein	NA	NA	NA	NA
AVJ72547.1\|618020_619238_+	sugar (and other) transporter family protein	NA	NA	NA	NA
AVJ69487.1\|619249_620368_+	oxidoreductase family, C-terminal alpha/beta domain protein	NA	NA	NA	NA
AVJ71257.1\|620410_620536_+	hypothetical protein	NA	NA	NA	NA
AVJ72335.1\|620588_620819_-	putative yjhD protein	NA	NA	NA	NA
AVJ71225.1\|620823_621072_+	putative membrane protein	NA	NA	NA	NA
AVJ69206.1\|621159_621432_+\|transposase	transposase family protein	Q716C1	Shigella_phage	1.0e-37	97.7
AVJ70623.1\|621505_622327_+	DDE domain protein	Q716C2	Shigella_phage	3.2e-164	99.3
621534:621547	attL	NA	NA	NA	NA
AVJ72422.1\|622737_624741_-\|holin	transporter, betaine/carnitine/choline transporter family protein	A0A2I7QNT1	Vibrio_phage	7.5e-21	25.9
AVJ70665.1\|624888_625707_-	HTH-like domain protein	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
AVJ72562.1\|625742_626045_-\|transposase	transposase family protein	NA	NA	NA	NA
AVJ71448.1\|626270_626657_+\|integrase	integrase core domain protein	Q716C2	Shigella_phage	6.2e-57	97.1
AVJ73487.1\|626978_627236_+	hypothetical protein	NA	NA	NA	NA
626856:626869	attR	NA	NA	NA	NA
AVJ68780.1\|627792_628404_-	ABC transporter family protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.6e-05	26.5
AVJ69137.1\|628387_628528_+	hypothetical protein	NA	NA	NA	NA
AVJ72336.1\|628560_629517_-	fe(3+) dicitrate transport system permease protein FecD	A0A2H4IY97	uncultured_Caudovirales_phage	2.4e-17	26.1

DBSCAN-SWA_2

635931 : 685436

Escherichia_phage(33.33%)

integrase,transposase

attL 644097:644111|attR 688388:688402

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ69866.1\|635931_636117_+\|transposase	putative transposase	Q71TF0	Escherichia_phage	7.3e-24	85.2
AVJ73434.1\|636117_636327_+\|transposase	putative transposase	U5P0U6	Shigella_phage	2.2e-32	98.6
AVJ69878.1\|637087_637345_+	biofilm development YmgB/AriR family protein	NA	NA	NA	NA
AVJ71436.1\|637507_637621_-	hypothetical protein	NA	NA	NA	NA
AVJ69976.1\|638095_639454_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
AVJ70759.1\|639692_641078_-\|transposase	transposase IS66 family protein	A0A0P0ZBS5	Stx2-converting_phage	5.0e-258	89.1
AVJ71889.1\|641127_641475_-\|transposase	putative transposase	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
AVJ71250.1\|641899_642028_-	hypothetical protein	NA	NA	NA	NA
AVJ69119.1\|642206_642641_-	hypothetical protein	NA	NA	NA	NA
AVJ70320.1\|643289_643859_-	hypothetical protein	NA	NA	NA	NA
644097:644111	attL	NA	NA	NA	NA
AVJ71509.1\|645382_645589_+	helix-turn-helix domain protein	NA	NA	NA	NA
AVJ70421.1\|645683_646286_+	hypothetical protein	NA	NA	NA	NA
AVJ69802.1\|646607_648092_-	hypothetical protein	NA	NA	NA	NA
AVJ72976.1\|648286_648403_-	hypothetical protein	NA	NA	NA	NA
AVJ68874.1\|648526_648643_-	hypothetical protein	NA	NA	NA	NA
AVJ72791.1\|648873_648996_+	hypothetical protein	NA	NA	NA	NA
AVJ69219.1\|649322_650195_+	miro-like family protein	NA	NA	NA	NA
AVJ71163.1\|650567_653687_+	antigen 43	NA	NA	NA	NA
AVJ73288.1\|653757_653916_+	hypothetical protein	NA	NA	NA	NA
AVJ73522.1\|654070_654889_+	hypothetical protein	A0A2C9CX26	Yersinia_phage	1.6e-46	39.7
AVJ68622.1\|655230_655413_+	intergenic-region protein	NA	NA	NA	NA
AVJ70221.1\|655468_655702_+	intergenic-region protein	NA	NA	NA	NA
AVJ73256.1\|655717_656194_+	DNA repair RadC family protein	NA	NA	NA	NA
AVJ71473.1\|656256_656478_+	hypothetical protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
AVJ70285.1\|656477_656591_+	putative intergenic-region protein	NA	NA	NA	NA
AVJ69515.1\|656760_657009_+	yagB/YeeU/YfjZ family protein	NA	NA	NA	NA
AVJ71406.1\|657935_659195_+	5-methylthioribose kinase	NA	NA	NA	NA
AVJ71059.1\|659204_660320_+	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
AVJ71134.1\|660350_660992_+	L-fuculose phosphate aldolase	NA	NA	NA	NA
AVJ68629.1\|661131_662100_+	sugar transport family protein	NA	NA	NA	NA
AVJ71421.1\|662140_663127_-	helix-turn-helix family protein	NA	NA	NA	NA
AVJ73071.1\|663164_663287_-	hypothetical protein	NA	NA	NA	NA
AVJ69728.1\|663473_664823_-	H+ symporter family protein	NA	NA	NA	NA
AVJ72002.1\|664929_666897_-	hypothetical protein	NA	NA	NA	NA
AVJ70713.1\|666907_667813_-	putative 2-keto-3-deoxy-galactonate aldolase YagE	NA	NA	NA	NA
AVJ70012.1\|667817_668606_-	bacterial transcriptional regulator family protein	NA	NA	NA	NA
AVJ70716.1\|668645_668792_-	hypothetical protein	NA	NA	NA	NA
AVJ71277.1\|668908_669691_-	deoR-like helix-turn-helix domain protein	NA	NA	NA	NA
AVJ72121.1\|669707_670340_-	ribulose-phosphate 3 epimerase family protein	NA	NA	NA	NA
AVJ70670.1\|670351_670783_-	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein	NA	NA	NA	NA
AVJ70024.1\|670913_671720_-	putative sgc region protein SgcQ	NA	NA	NA	NA
AVJ69764.1\|671732_673046_-	PTS system, galactitol-specific IIC component family protein	NA	NA	NA	NA
AVJ71389.1\|673057_673303_-	PTS system, Lactose/Cellobiose specific IIB subunit	NA	NA	NA	NA
AVJ70584.1\|673332_674454_-	M42 glutamyl aminopeptidase family protein	NA	NA	NA	NA
AVJ68760.1\|675239_675986_-	hypothetical protein	NA	NA	NA	NA
AVJ69945.1\|676041_676587_-	acetyltransferase family protein	NA	NA	NA	NA
AVJ72827.1\|676598_676856_-	hypothetical protein	NA	NA	NA	NA
AVJ69753.1\|677346_677478_-	hypothetical protein	NA	NA	NA	NA
AVJ70217.1\|677641_677851_+	superfamily I DNA helicase	NA	NA	NA	NA
AVJ68873.1\|678372_678834_+	phospholipase D family protein	NA	NA	NA	NA
AVJ69186.1\|679416_680397_-	hypothetical protein	Q08JA2	Stx2-converting_phage	4.7e-101	56.6
AVJ72070.1\|680461_681568_-	mutarotase, YjhT family protein	NA	NA	NA	NA
AVJ70757.1\|681587_682136_-	putative N-acetylneuraminic acid outer membrane channel protein NanC	NA	NA	NA	NA
AVJ73508.1\|682969_683107_-	hypothetical protein	NA	NA	NA	NA
AVJ68688.1\|683759_684362_+\|integrase	phage integrase family protein	A0A2L1IV36	Escherichia_phage	3.1e-55	52.3
AVJ70930.1\|684839_685436_+\|integrase	phage integrase family protein	A0A2L1IV36	Escherichia_phage	3.9e-50	53.4
688388:688402	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1215742 : 1270795

Bacillus_phage(28.57%)

integrase,tRNA,protease,transposase

attL 1213805:1213819|attR 1219757:1219771

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1213805:1213819	attL	NA	NA	NA	NA
AVJ69327.1\|1215742_1216345_-\|integrase	integrase core domain protein	A0A1B1P773	Bacillus_phage	9.9e-62	56.8
AVJ72932.1\|1216344_1216629_-	helix-turn-helix domain protein	NA	NA	NA	NA
AVJ69278.1\|1216782_1218051_-	protein AraJ	NA	NA	NA	NA
AVJ69142.1\|1218092_1221236_-	exonuclease SbcC family protein	G3MAB6	Bacillus_virus	5.8e-12	26.9
1219757:1219771	attR	NA	NA	NA	NA
AVJ70671.1\|1221232_1222435_-	exonuclease SbcCD, D subunit	R4JGS2	Bacillus_phage	2.4e-06	32.4
AVJ71809.1\|1222624_1223314_+	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	4.4e-37	38.0
AVJ69500.1\|1223371_1224667_+	phosphate regulon sensor kinase PhoR	W8CYF6	Bacillus_phage	1.3e-26	30.8
AVJ72007.1\|1225073_1226393_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
AVJ70128.1\|1226587_1227046_+\|transposase	transposase IS200 like family protein	NA	NA	NA	NA
AVJ70335.1\|1227179_1228553_+	proline-specific permease ProY	NA	NA	NA	NA
AVJ70554.1\|1228708_1230526_+	alpha amylase, N-terminal ig-like domain protein	NA	NA	NA	NA
AVJ72695.1\|1230711_1232169_+	hypothetical protein	NA	NA	NA	NA
AVJ68830.1\|1232189_1232771_-	hypothetical protein	NA	NA	NA	NA
AVJ71286.1\|1232989_1234060_+\|tRNA	tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AVJ72713.1\|1234115_1235243_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.1e-89	46.1
AVJ72113.1\|1235265_1235598_+	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	2.8e-10	33.0
AVJ68777.1\|1235658_1237473_+	protein-export membrane protein SecD	NA	NA	NA	NA
AVJ70809.1\|1237483_1238455_+	protein-export membrane protein SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.0e-44	37.9
AVJ70610.1\|1238649_1239108_+\|transposase	transposase IS200 like family protein	NA	NA	NA	NA
AVJ72498.1\|1239294_1239642_+	HNH endonuclease family protein	NA	NA	NA	NA
AVJ69905.1\|1239679_1240564_-	nucleoside-specific channel-forming protein tsx	NA	NA	NA	NA
AVJ73459.1\|1240861_1241149_-	hypothetical protein	NA	NA	NA	NA
AVJ71577.1\|1241472_1241745_-\|transposase	transposase IS200 like family protein	A0A1S5RHE3	Helicobacter_phage	1.9e-28	65.6
AVJ68740.1\|1241827_1242925_+\|transposase	transposase, IS605 OrfB family	A0A1W6JP07	Morganella_phage	4.0e-194	96.2
AVJ70298.1\|1242960_1243149_-	hypothetical protein	NA	NA	NA	NA
AVJ72522.1\|1243425_1243749_+	transcriptional regulator NrdR	NA	NA	NA	NA
AVJ69523.1\|1243770_1244856_+	riboflavin biosynthesis protein RibD	A0A1V0SE20	Indivirus	1.3e-51	35.3
AVJ69423.1\|1244944_1245415_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.3e-29	47.4
AVJ70525.1\|1245434_1245854_+	transcription antitermination factor NusB	NA	NA	NA	NA
AVJ71849.1\|1245931_1246909_+	thiamine-monophosphate kinase	NA	NA	NA	NA
AVJ69832.1\|1246886_1247402_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA
AVJ69485.1\|1247578_1249150_-	pentapeptide repeats family protein	NA	NA	NA	NA
AVJ71520.1\|1249380_1250355_-	aldo/keto reductase family protein	NA	NA	NA	NA
AVJ71058.1\|1250409_1252272_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
AVJ71224.1\|1252296_1253196_-	farnesyl diphosphate synthase	NA	NA	NA	NA
AVJ72176.1\|1253195_1253438_-	exodeoxyribonuclease VII, small subunit	NA	NA	NA	NA
AVJ68803.1\|1253643_1255092_+\|tRNA	tRNA sulfurtransferase ThiI	NA	NA	NA	NA
AVJ72179.1\|1255145_1255736_-	DJ-1 family protein	NA	NA	NA	NA
AVJ69381.1\|1255698_1256610_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AVJ72570.1\|1256777_1257269_+	hypothetical protein	NA	NA	NA	NA
AVJ71141.1\|1257396_1258689_-	inner membrane transport protein YajR	NA	NA	NA	NA
AVJ71984.1\|1258909_1259797_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
AVJ68644.1\|1259811_1260087_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
AVJ71523.1\|1260140_1260656_-	cytochrome o ubiquinol oxidase, subunit III	NA	NA	NA	NA
AVJ70313.1\|1260744_1262685_-	cytochrome o ubiquinol oxidase, subunit I	NA	NA	NA	NA
AVJ69068.1\|1262757_1263645_-	ubiquinol oxidase, subunit II	NA	NA	NA	NA
AVJ72505.1\|1264164_1265640_-	ampG-like permease family protein	NA	NA	NA	NA
AVJ72674.1\|1265683_1266262_-	prokaryotic membrane lipolipid attachment site family protein	NA	NA	NA	NA
AVJ69889.1\|1266569_1266884_+	protein BolA	NA	NA	NA	NA
AVJ73537.1\|1266892_1267081_+	hypothetical protein	NA	NA	NA	NA
AVJ71132.1\|1267227_1268526_+	trigger factor	NA	NA	NA	NA
AVJ71907.1\|1268771_1269395_+	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.9e-64	63.9
AVJ71166.1\|1269520_1270795_+\|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.7e-132	56.4

DBSCAN-SWA_4

2000745 : 2078340

Enterobacteria_phage(36.36%)

head,transposase,lysis,portal,capsid,terminase,integrase,tail,tRNA

attL 2001873:2001888|attR 2045188:2045203

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ71929.1\|2000745_2001204_+\|transposase	transposase IS200 like family protein	NA	NA	NA	NA
AVJ70103.1\|2001325_2002285_-	putative L,D-transpeptidase YcfS	NA	NA	NA	NA
2001873:2001888	attL	NA	NA	NA	NA
AVJ69474.1\|2002431_2005878_-	transcription-repair coupling factor	NA	NA	NA	NA
AVJ70762.1\|2006005_2007079_-	inner membrane protein YcfT	NA	NA	NA	NA
AVJ72964.1\|2007339_2008539_+	liporeleasing system, transmembrane, LolC/E family protein	NA	NA	NA	NA
AVJ69457.1\|2008531_2009233_+	liporeleasing system, ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-35	39.8
AVJ70943.1\|2009232_2010477_+	liporeleasing system, transmembrane protein LolE	NA	NA	NA	NA
AVJ73572.1\|2010505_2011417_+	glucokinase family protein	NA	NA	NA	NA
AVJ72909.1\|2011432_2012254_+	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	5.6e-23	35.6
AVJ71864.1\|2012390_2013176_-	inner membrane protein YcfZ	NA	NA	NA	NA
AVJ73500.1\|2013172_2013634_-	inner membrane protein YmfA	NA	NA	NA	NA
AVJ71991.1\|2013691_2014738_-	putative lipo family protein	NA	NA	NA	NA
AVJ68858.1\|2014734_2015529_-	binding-protein-dependent transport system inner membrane component family protein	NA	NA	NA	NA
AVJ72635.1\|2015695_2016715_-\|integrase	phage integrase family protein	Q77Z04	Phage_21	3.1e-79	43.6
AVJ70891.1\|2016782_2017052_-	excisionase-like family protein	NA	NA	NA	NA
AVJ68680.1\|2017113_2019570_-	enterobacterial exodeoxyribonuclease VIII family protein	V5UQJ3	Shigella_phage	3.3e-103	42.6
AVJ73403.1\|2019647_2019851_-	hypothetical protein	NA	NA	NA	NA
AVJ70806.1\|2020046_2020901_-	phage regulatory, Rha family protein	A0A0P0ZE80	Stx2-converting_phage	3.6e-65	63.2
AVJ70864.1\|2021203_2021341_+	hypothetical protein	NA	NA	NA	NA
AVJ72896.1\|2021431_2021806_-	hypothetical protein	NA	NA	NA	NA
AVJ72230.1\|2021817_2022024_-	hypothetical protein	NA	NA	NA	NA
AVJ70122.1\|2022176_2022584_-	helix-turn-helix domain protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
AVJ69420.1\|2022660_2022888_+	putative transcriptional repressor of cell division inhibition protein	NA	NA	NA	NA
AVJ70090.1\|2022931_2023423_+	hypothetical protein	NA	NA	NA	NA
AVJ71484.1\|2023394_2024435_+	putative primosomal protein I	A0A0U2RT81	Escherichia_phage	1.0e-90	87.2
AVJ70832.1\|2024466_2024889_+	putative phage replication protein P	A0A0U2JGJ0	Escherichia_phage	2.8e-71	89.3
AVJ69362.1\|2024922_2025693_+	HTH domain protein	A0A0U2SAW4	Escherichia_phage	1.1e-86	68.4
AVJ73183.1\|2025708_2026101_+	hypothetical protein	A0A088CBK9	Shigella_phage	1.5e-39	63.3
AVJ68679.1\|2026097_2026394_+	hypothetical protein	A0A0U2SAZ1	Escherichia_phage	1.2e-47	95.8
AVJ71123.1\|2026390_2026852_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	2.6e-38	94.0
AVJ70683.1\|2026829_2027186_+	putative bacteriophage protein	A0A2R2Z307	Escherichia_phage	1.1e-57	98.3
AVJ70880.1\|2027530_2027689_+	putative ycgB protein	A0A0A7NRY2	Enterobacteria_phage	3.0e-18	89.6
AVJ72718.1\|2027690_2028056_+	HNH endonuclease family protein	A0A2R2Z2X9	Escherichia_phage	1.9e-68	99.2
AVJ71726.1\|2028052_2029039_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.8e-44	41.5
AVJ71539.1\|2029213_2029339_+	putative membrane protein	NA	NA	NA	NA
AVJ68681.1\|2029791_2029908_+	hypothetical protein	NA	NA	NA	NA
AVJ69678.1\|2029969_2030221_+	hypothetical protein	NA	NA	NA	NA
AVJ68870.1\|2030567_2031626_+	hypothetical protein	A0A291AWV9	Escherichia_phage	1.8e-90	48.3
AVJ69197.1\|2031626_2031995_+	endodeoxyribonuclease RusA family protein	V5URS4	Shigella_phage	2.4e-34	62.8
AVJ69140.1\|2031987_2032677_+	phage antitermination Q family protein	I6PDF8	Cronobacter_phage	7.1e-56	48.1
AVJ71305.1\|2032853_2033087_+	hypothetical protein	S5MQK8	Escherichia_phage	3.7e-33	93.4
AVJ70553.1\|2033062_2033176_+	putative membrane protein	NA	NA	NA	NA
AVJ73105.1\|2033456_2033642_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	6.4e-20	73.7
AVJ72742.1\|2033917_2034067_-	hypothetical protein	NA	NA	NA	NA
AVJ72038.1\|2034052_2034241_+	hypothetical protein	H6WZJ9	Escherichia_phage	1.9e-27	96.8
AVJ69790.1\|2034237_2034399_+	hypothetical protein	Q08JA2	Stx2-converting_phage	1.6e-14	89.1
AVJ70196.1\|2034548_2034764_+\|lysis	lysis S family protein	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
AVJ73043.1\|2034768_2035659_+	hypothetical protein	Q08JA0	Stx2-converting_phage	3.6e-108	70.6
AVJ71321.1\|2035695_2036229_+	phage lysozyme family protein	Q6H9V6	Enterobacteria_phage	3.3e-101	96.0
AVJ72777.1\|2036388_2036526_+	hypothetical protein	Q687G2	Enterobacteria_phage	1.3e-17	97.8
AVJ69232.1\|2036527_2036995_+\|lysis	bacteriophage lysis family protein	Q7AYI6	Enterobacteria_phage	7.0e-55	77.9
AVJ71683.1\|2037608_2037953_+	phage DNA packaging Nu1 family protein	NA	NA	NA	NA
AVJ71194.1\|2038005_2039853_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	7.3e-257	67.6
AVJ70674.1\|2039836_2040043_+\|head,tail	phage head-to-tail joining family protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
AVJ69496.1\|2040039_2041632_+\|portal	phage portal protein, lambda family	K7P6U7	Enterobacteria_phage	4.9e-185	61.1
AVJ71526.1\|2041621_2043070_+	peptidase S49 family protein	A0A2I6TC87	Escherichia_phage	9.9e-100	53.1
AVJ70173.1\|2043106_2043454_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.8e-23	59.1
AVJ71728.1\|2043511_2044540_+\|capsid	phage major capsid E family protein	C6ZCY2	Enterobacteria_phage	1.4e-116	62.2
AVJ69468.1\|2044591_2044966_+	DNA packaging FI family protein	NA	NA	NA	NA
AVJ72746.1\|2044958_2045312_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.9e-41	70.1
2045188:2045203	attR	NA	NA	NA	NA
AVJ72832.1\|2045327_2045861_+\|tail	prophage minor tail Z family protein	A0A2R9YJK4	Escherichia_phage	2.5e-56	64.6
AVJ70197.1\|2045857_2046253_+\|tail	minor tail protein U	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
AVJ69534.1\|2046260_2047010_+\|tail	phage tail family protein	Q687F6	Enterobacteria_phage	2.7e-125	93.8
AVJ68846.1\|2047028_2047460_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	7.4e-43	68.8
AVJ72702.1\|2047510_2047900_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	2.5e-37	82.4
AVJ73515.1\|2047880_2050442_+\|tail	phage tail tape measure protein, lambda family	A0A2R9YJM8	Escherichia_phage	0.0e+00	87.5
AVJ73074.1\|2050438_2050768_+\|tail	phage minor tail family protein	Q687F2	Enterobacteria_phage	2.1e-58	99.1
AVJ70393.1\|2050767_2051466_+\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	3.2e-128	96.6
AVJ69875.1\|2051476_2052220_+	nlpC/P60 family protein	Q6H9T4	Enterobacteria_phage	5.0e-148	98.0
AVJ72330.1\|2052216_2052798_+\|tail	bacteriophage lambda tail assembly I family protein	H6WZM5	Escherichia_phage	4.0e-92	96.9
AVJ70093.1\|2053141_2056834_+	hypothetical protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	85.7
AVJ72766.1\|2056901_2057501_+	outer membrane beta-barrel domain protein	H6WZM8	Escherichia_phage	7.7e-107	94.0
AVJ70842.1\|2058149_2058887_-	hypothetical protein	NA	NA	NA	NA
AVJ73456.1\|2058938_2059085_-	hypothetical protein	Q8W769	Escherichia_phage	1.1e-06	79.2
AVJ71817.1\|2059914_2060679_+\|tail	phage tail fiber repeat family protein	K7PHC9	Enterobacteria_phage	1.2e-40	64.7
AVJ71615.1\|2060678_2061263_+\|tail	caudovirales tail fiber assembly family protein	K7PMH7	Enterobacteria_phage	6.6e-103	94.8
AVJ73014.1\|2062042_2062309_+\|tail	caudovirales tail fiber assembly family protein	K7PMH7	Enterobacteria_phage	1.5e-17	81.8
AVJ70994.1\|2062540_2063374_-	binding-protein-dependent transport system inner membrane component family protein	Q6GZ02	Mycoplasma_phage	6.5e-11	28.7
AVJ73206.1\|2063387_2064524_-	spermidine/putrescine import ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
AVJ70912.1\|2064502_2064718_-	hypothetical protein	NA	NA	NA	NA
AVJ71754.1\|2064773_2066000_+	peptidase T	NA	NA	NA	NA
AVJ70188.1\|2066048_2067170_-	50S ribosomal protein L16 arginine hydroxylase	NA	NA	NA	NA
AVJ68738.1\|2067245_2068706_-	sensor protein PhoQ	NA	NA	NA	NA
AVJ69167.1\|2068705_2069377_-	transcriptional regulatory protein PhoP	NA	NA	NA	NA
AVJ69217.1\|2069546_2070917_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
AVJ72642.1\|2070920_2071562_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
AVJ71600.1\|2071597_2072704_-\|tRNA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	NA	NA	NA	NA
AVJ69334.1\|2072757_2073219_-	phosphatase NudJ	NA	NA	NA	NA
AVJ69469.1\|2073228_2073762_-	pseudouridine synthase family protein	NA	NA	NA	NA
AVJ72938.1\|2074117_2074240_-	hypothetical protein	NA	NA	NA	NA
AVJ72573.1\|2075566_2076817_+	isocitrate dehydrogenase, NADP-dependent	Q77Z09	Phage_21	6.5e-23	98.1
AVJ69331.1\|2077881_2078340_+\|transposase	transposase IS200 like family protein	NA	NA	NA	NA

DBSCAN-SWA_5

2295307 : 2353499

Escherichia_phage(49.02%)

transposase,holin,lysis,terminase,integrase,tail,tRNA,coat

attL 2286203:2286218|attR 2329187:2329202

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2286203:2286218	attL	NA	NA	NA	NA
AVJ72369.1\|2295307_2296240_-	diguanylate cyclase domain protein	A0A127AWB9	Bacillus_phage	2.3e-17	39.5
AVJ72963.1\|2296498_2297002_+\|transposase	putative transposase	U5P0U6	Shigella_phage	3.1e-85	93.8
AVJ70587.1\|2297571_2298555_+	zinc transport protein ZntB	NA	NA	NA	NA
AVJ70935.1\|2298517_2298658_+	hypothetical protein	NA	NA	NA	NA
AVJ70161.1\|2299032_2300406_+	ATP-independent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
AVJ72195.1\|2300534_2301470_-\|tRNA	tRNA 2-thiocytidine biosynthesis protein TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
AVJ70639.1\|2301521_2302127_-\|integrase	phage integrase family protein	A0A0U2JGI6	Escherichia_phage	7.8e-115	99.5
AVJ70443.1\|2302758_2302974_-	putative excisionase	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
AVJ71013.1\|2303073_2303334_-	double-strand break reduction domain protein	A0A0U2QL97	Escherichia_phage	7.6e-27	98.4
AVJ70098.1\|2303504_2304314_-	protein RecT	A0A1P8DTF2	Proteus_phage	4.0e-106	71.5
AVJ73031.1\|2304306_2306907_-	exodeoxyribonuclease 8	A0A0U2I1R6	Escherichia_phage	6.1e-249	63.5
AVJ71366.1\|2307008_2307284_-	putative phage protein	A0A0U2QW85	Escherichia_phage	4.0e-42	95.6
AVJ69379.1\|2307528_2307750_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
AVJ73090.1\|2308191_2308680_+	superinfection exclusion B family protein	NA	NA	NA	NA
AVJ69418.1\|2308842_2309022_-	hypothetical protein	NA	NA	NA	NA
AVJ69501.1\|2309264_2309684_-	helix-turn-helix family protein	A0A2I6PIE7	Escherichia_phage	5.5e-19	46.5
AVJ72019.1\|2309763_2310018_+	putative 8.4 kDa cro protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
AVJ70620.1\|2310014_2310437_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.3e-68	92.9
AVJ71622.1\|2310514_2311303_+	hypothetical protein	G9L6A8	Escherichia_phage	2.0e-41	64.3
AVJ69811.1\|2311309_2312056_+	istB-like ATP binding family protein	V5UQI5	Shigella_phage	1.1e-110	78.5
AVJ70758.1\|2312078_2312840_+	feoC like transcriptional regulator family protein	A0A0U2SAW4	Escherichia_phage	1.7e-114	87.0
AVJ69372.1\|2312855_2313278_+	hypothetical protein	A0A0U2QQN3	Escherichia_phage	7.4e-64	90.6
AVJ68878.1\|2313439_2313943_+	hypothetical protein	Q9G078	Enterobacteria_phage	4.3e-18	39.7
AVJ70916.1\|2314063_2314837_-	kilA-N domain protein	A0A1L2BWW1	Bacteriophage	9.6e-09	42.6
AVJ70573.1\|2315567_2315777_-	tellurite resistance protein B	NA	NA	NA	NA
AVJ71537.1\|2316776_2317376_+	hypothetical protein	A0A0U2RT94	Escherichia_phage	2.9e-106	92.0
AVJ73272.1\|2317375_2317666_+	hypothetical protein	A0A0U2KD41	Escherichia_phage	7.4e-47	88.5
AVJ69579.1\|2317662_2318205_+	hypothetical protein	A0A0U2S606	Escherichia_phage	5.8e-77	76.3
AVJ72955.1\|2318181_2318298_-	hypothetical protein	NA	NA	NA	NA
AVJ70303.1\|2318861_2318996_+	hypothetical protein	NA	NA	NA	NA
AVJ71806.1\|2319343_2319685_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	6.2e-53	90.1
AVJ70578.1\|2319688_2320165_+	lysozyme	K7PKV2	Enterobacteria_phage	5.0e-85	95.6
AVJ71952.1\|2320161_2320626_+\|lysis	bacteriophage lysis family protein	A0A0K2FJD0	Enterobacteria_phage	4.0e-71	93.4
AVJ70023.1\|2320796_2322221_+	trk system potassium uptake protein TrkG	NA	NA	NA	NA
AVJ69690.1\|2322358_2323150_+	parB-like nuclease domain protein	R4TG31	Halovirus	2.8e-48	40.2
AVJ71917.1\|2323142_2324075_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.1e-83	54.9
AVJ68635.1\|2324052_2324262_+	hypothetical protein	NA	NA	NA	NA
AVJ68670.1\|2324265_2325360_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	4.5e-113	80.5
AVJ73102.1\|2325334_2326642_+\|terminase	terminase-like family protein	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.4
AVJ73430.1\|2326644_2328051_+	hypothetical protein	G8C7P4	Escherichia_phage	3.0e-186	69.0
AVJ70282.1\|2328034_2329147_+	phage Mu F like family protein	I6PD76	Cronobacter_phage	7.1e-114	54.5
AVJ71688.1\|2329251_2330016_+	hypothetical protein	G8C7P6	Escherichia_phage	6.9e-84	64.2
2329187:2329202	attR	NA	NA	NA	NA
AVJ71343.1\|2330114_2331254_+\|coat	P22 coat family protein	G8C7P7	Escherichia_phage	9.7e-159	75.0
AVJ72482.1\|2331296_2331473_+	hypothetical protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
AVJ73126.1\|2331476_2331872_+	hypothetical protein	NA	NA	NA	NA
AVJ68757.1\|2331871_2332255_+	putative glutamate 5-kinase	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
AVJ69033.1\|2332255_2332636_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.5e-18	43.6
AVJ72786.1\|2332632_2333025_+	bacteriophage related domain of unknown function family protein	NA	NA	NA	NA
AVJ72831.1\|2333051_2334014_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	8.4e-55	38.6
AVJ73068.1\|2334074_2334524_+	hypothetical protein	NA	NA	NA	NA
AVJ71504.1\|2334691_2334832_+	hypothetical protein	NA	NA	NA	NA
AVJ70206.1\|2334995_2338229_+\|tail	phage tail tape measure protein, lambda family	A0A2H4J9A1	uncultured_Caudovirales_phage	7.4e-103	33.0
AVJ68957.1\|2338263_2338560_+\|tail	phage minor tail family protein	H6WZM2	Escherichia_phage	1.8e-24	52.0
AVJ68843.1\|2338559_2339258_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.1e-125	93.5
AVJ69183.1\|2339263_2340007_+	nlpC/P60 family protein	K7PLW1	Enterobacteria_phage	1.0e-145	96.7
AVJ70598.1\|2340003_2340546_+\|tail	bacteriophage lambda tail assembly I family protein	A0A291AWV5	Escherichia_phage	1.1e-75	83.0
AVJ70963.1\|2340606_2344086_+	fibronectin type III family protein	A5LH43	Enterobacteria_phage	0.0e+00	89.6
AVJ70981.1\|2344153_2344753_+	outer membrane beta-barrel domain protein	Q9EV15	Enterobacteria_phage	9.8e-102	91.5
AVJ68912.1\|2345182_2345623_-	putative membrane protein	NA	NA	NA	NA
AVJ70351.1\|2345771_2347217_+\|tail	putative tail fiber domain protein	A0A0E3M194	Enterobacteria_phage	2.3e-133	55.3
AVJ72918.1\|2347213_2347495_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.2e-17	47.8
AVJ68847.1\|2347618_2348209_+\|tail	putative phage tail fiber protein	A0A1X7QGH6	Escherichia_phage	1.7e-58	61.7
AVJ71009.1\|2348219_2348513_+	hypothetical protein	NA	NA	NA	NA
AVJ72489.1\|2348740_2349331_-	putative DNA-invertase from lambdoid prophage Rac	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
AVJ69427.1\|2349647_2349764_-	putative dNA-binding transcriptional regulator	A0A192Y6D5	Salmonella_phage	2.2e-10	78.9
AVJ71903.1\|2350666_2351950_+	H+ symporter family protein	NA	NA	NA	NA
AVJ68834.1\|2352038_2353499_+	mannitol dehydrogenase Rossmann domain protein	G8DCZ3	Micromonas_pusilla_virus	5.1e-43	29.7

DBSCAN-SWA_6

2502100 : 2612529

113

Enterobacteria_phage(39.62%)

head,transposase,lysis,portal,capsid,terminase,integrase,tail

attL 2557317:2557332|attR 2606531:2606546

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ72638.1\|2502100_2502559_-\|transposase	transposase IS200 like family protein	NA	NA	NA	NA
AVJ69539.1\|2502736_2503405_-	hypothetical protein	NA	NA	NA	NA
AVJ70845.1\|2503707_2504301_-	tellurite resistance protein TehB	NA	NA	NA	NA
AVJ73275.1\|2504297_2505290_-	tellurite resistance protein TehA	NA	NA	NA	NA
AVJ73299.1\|2505413_2506394_+	bacterial transferase hexapeptide family protein	NA	NA	NA	NA
AVJ69834.1\|2506385_2506925_-	ribosomal-protein-serine acetyltransferase	NA	NA	NA	NA
AVJ72577.1\|2506987_2507212_-	hypothetical protein	NA	NA	NA	NA
AVJ71073.1\|2507351_2508971_-	glucans biosynthesis protein D	NA	NA	NA	NA
AVJ70083.1\|2509231_2510524_-	hypothetical protein	NA	NA	NA	NA
AVJ72046.1\|2510791_2511715_+	lysR substrate binding domain protein	NA	NA	NA	NA
AVJ73110.1\|2511752_2513393_-	methyl-accepting chemotaxis protein III	NA	NA	NA	NA
AVJ70502.1\|2514012_2514165_-	hypothetical protein	A0A0R6PKG1	Moraxella_phage	6.6e-07	69.8
AVJ71171.1\|2514430_2514961_-	prokaryotic cytochrome b561 family protein	A0A0U2QLA7	Escherichia_phage	2.0e-18	43.9
AVJ70097.1\|2515149_2516151_+	glyceraldehyde-3-phosphate dehydrogenase, type I	NA	NA	NA	NA
AVJ73293.1\|2516192_2517608_-	lactaldehyde dehydrogenase	NA	NA	NA	NA
AVJ69778.1\|2517828_2518629_-	protein YdcF	NA	NA	NA	NA
AVJ70072.1\|2518744_2518858_-	hypothetical protein	NA	NA	NA	NA
AVJ72863.1\|2519241_2519685_-	hypothetical protein	NA	NA	NA	NA
AVJ71289.1\|2519677_2519839_-	hypothetical protein	NA	NA	NA	NA
AVJ71185.1\|2520300_2524203_-	ATP-dependent helicase HrpA	A0A1V0SIV3	Klosneuvirus	2.2e-53	29.5
AVJ73494.1\|2524403_2525009_+	NADPH-dependent FMN reductase family protein	NA	NA	NA	NA
AVJ73296.1\|2525062_2526331_-	protein-tyrosine phosphatase family protein	NA	NA	NA	NA
AVJ69505.1\|2526368_2527955_-	methyltransferase domain protein	NA	NA	NA	NA
AVJ73295.1\|2528141_2528609_-	cytidylyltransferase family protein	NA	NA	NA	NA
AVJ70524.1\|2528816_2529038_-	putative membrane protein	NA	NA	NA	NA
AVJ69569.1\|2529037_2529643_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
AVJ72303.1\|2529813_2531379_-	hypothetical protein	NA	NA	NA	NA
AVJ72685.1\|2532183_2533044_-	putative oxidoreductase YdbC	NA	NA	NA	NA
AVJ71743.1\|2533251_2538210_-	autotransporter beta-domain protein	NA	NA	NA	NA
AVJ71316.1\|2539629_2539749_-	hypothetical protein	NA	NA	NA	NA
AVJ69611.1\|2539733_2540000_-	hypothetical protein	NA	NA	NA	NA
AVJ72930.1\|2540064_2540250_-	ynbE-like lipofamily protein	NA	NA	NA	NA
AVJ70270.1\|2540246_2542886_-	dicarboxylate transport family protein	NA	NA	NA	NA
AVJ69150.1\|2543093_2544083_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
AVJ72517.1\|2544193_2544616_+	heat shock protein HslJ	NA	NA	NA	NA
AVJ73252.1\|2544612_2544738_-	hypothetical protein	NA	NA	NA	NA
AVJ70987.1\|2544965_2545082_+	hypothetical protein	NA	NA	NA	NA
AVJ69887.1\|2545152_2548677_+	ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
AVJ68677.1\|2549043_2550177_+	outer membrane protein N	Q1MVN1	Enterobacteria_phage	8.3e-118	58.8
AVJ72118.1\|2550317_2550752_+	hypothetical protein	A0A1W6JNV4	Morganella_phage	3.0e-28	52.8
AVJ72104.1\|2551459_2552251_+	periplasmic solute binding family protein	NA	NA	NA	NA
AVJ72177.1\|2552250_2553078_+	ABC transporter family protein	G9BWD6	Planktothrix_phage	3.8e-11	28.5
AVJ70457.1\|2553080_2553932_+	ABC 3 transport family protein	NA	NA	NA	NA
AVJ69454.1\|2553928_2554786_+	ABC 3 transport family protein	NA	NA	NA	NA
AVJ69335.1\|2555258_2556053_+	hypothetical protein	NA	NA	NA	NA
AVJ68785.1\|2556598_2556892_-	hypothetical protein	NA	NA	NA	NA
AVJ70384.1\|2556934_2557699_-	chaperone of endosialidase family protein	A0A0E3M4A9	Enterobacteria_phage	1.5e-102	76.3
2557317:2557332	attL	NA	NA	NA	NA
AVJ72228.1\|2557984_2558266_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.4e-18	50.0
AVJ71429.1\|2558265_2559687_-\|tail	putative tail fiber domain protein	A0A1X7QGG5	Escherichia_phage	1.1e-167	69.0
AVJ71936.1\|2559835_2560276_+	putative membrane protein	NA	NA	NA	NA
AVJ71908.1\|2560761_2561220_-\|transposase	transposase IS200 like family protein	NA	NA	NA	NA
AVJ69851.1\|2561416_2562016_-	outer membrane beta-barrel domain protein	Q9EV15	Enterobacteria_phage	9.8e-102	91.5
AVJ68827.1\|2562083_2565563_-	fibronectin type III family protein	A5LH43	Enterobacteria_phage	0.0e+00	89.6
AVJ71814.1\|2565623_2566166_-\|tail	bacteriophage lambda tail assembly I family protein	A0A291AWV5	Escherichia_phage	1.1e-75	83.0
AVJ71788.1\|2566162_2566906_-	nlpC/P60 family protein	K7PLW1	Enterobacteria_phage	9.5e-147	96.7
AVJ70966.1\|2566911_2567610_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.9e-131	97.4
AVJ70511.1\|2567609_2567939_-\|tail	phage minor tail family protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
AVJ71887.1\|2567935_2570497_-\|tail	phage tail tape measure protein, lambda family	A0A0K2FI43	Enterobacteria_phage	0.0e+00	95.9
AVJ73368.1\|2570489_2570924_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
AVJ68776.1\|2570905_2571328_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
AVJ71629.1\|2571343_2572057_-\|tail	major tail protein V	A0A0K2FJ05	Enterobacteria_phage	1.0e-126	99.6
AVJ73037.1\|2572091_2572487_-\|tail	minor tail protein U	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
AVJ69919.1\|2572483_2572723_-\|tail	prophage minor tail Z family protein	A0A2R9YJK4	Escherichia_phage	2.6e-37	100.0
AVJ69359.1\|2572802_2573063_-\|tail	prophage minor tail Z family protein	A0A2R9YJK4	Escherichia_phage	5.6e-30	100.0
AVJ72436.1\|2573074_2573428_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.0e-62	100.0
AVJ72170.1\|2573439_2573838_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	2.3e-62	98.5
AVJ72923.1\|2573879_2574899_-\|capsid	phage major capsid E family protein	C6ZCY2	Enterobacteria_phage	2.3e-191	99.7
AVJ69663.1\|2574959_2575292_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
AVJ71552.1\|2575301_2576621_-	peptidase S49 family protein	A0A2I6TC87	Escherichia_phage	2.2e-231	97.7
AVJ71626.1\|2576601_2578203_-\|portal	phage portal protein, lambda family	A0A0K2FJC0	Enterobacteria_phage	1.1e-309	99.2
AVJ72541.1\|2578199_2578406_-\|head,tail	head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AVJ71282.1\|2578402_2580328_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
AVJ70722.1\|2580302_2580848_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
AVJ71843.1\|2581296_2581470_+	hypothetical protein	A0A0K2FIR8	Escherichia_phage	1.9e-10	76.7
AVJ70517.1\|2582089_2582266_-	gnsA/GnsB family protein	NA	NA	NA	NA
AVJ70838.1\|2582936_2583137_-	cold shock-like protein CspG	A0A1W6JNX5	Morganella_phage	3.7e-21	74.2
AVJ73117.1\|2583511_2583994_-	hypothetical protein	A0A291LBG9	Klebsiella_phage	2.8e-06	29.9
AVJ68849.1\|2584005_2584539_-	phage lysozyme family protein	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AVJ71244.1\|2584535_2584847_-	hypothetical protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AVJ72411.1\|2584851_2585067_-\|lysis	lysis S family protein	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AVJ71746.1\|2585820_2586036_-	cold shock protein CspA	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
AVJ71671.1\|2586348_2586549_+	cold-shock DNA-binding domain protein	NA	NA	NA	NA
AVJ71208.1\|2586783_2586939_-	hypothetical protein	NA	NA	NA	NA
AVJ73257.1\|2586970_2587723_-	antitermination family protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
AVJ69716.1\|2587736_2588690_-	hypothetical protein	Q8SBE5	Shigella_phage	3.3e-104	58.4
AVJ69321.1\|2589132_2589384_-	hypothetical protein	NA	NA	NA	NA
AVJ72053.1\|2589445_2589562_-	hypothetical protein	NA	NA	NA	NA
AVJ70678.1\|2590114_2590354_-	antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
AVJ69103.1\|2590886_2591219_+	flxA-like family protein	NA	NA	NA	NA
AVJ72618.1\|2591655_2592969_-\|integrase	integrase core domain protein	NA	NA	NA	NA
AVJ70988.1\|2593452_2594481_-	hypothetical protein	NA	NA	NA	NA
AVJ71475.1\|2595300_2595867_-	hypothetical protein	NA	NA	NA	NA
AVJ72795.1\|2596168_2596441_-	hypothetical protein	A0A0U2QQN3	Escherichia_phage	5.7e-41	92.2
AVJ72174.1\|2596607_2597573_-	putative ybl78	U5P0A0	Shigella_phage	2.6e-56	60.8
AVJ72625.1\|2597553_2598075_-	hypothetical protein	NA	NA	NA	NA
AVJ72150.1\|2598639_2598774_+	putative transcriptional repressor DicA	I6PD69	Cronobacter_phage	2.9e-06	52.3
AVJ72192.1\|2598888_2599098_+	hypothetical protein	M4QQ57	Salicola_phage	5.4e-07	53.2
AVJ69271.1\|2599117_2599675_+	hypothetical protein	NA	NA	NA	NA
AVJ72840.1\|2599895_2600051_-	putative ybl82 protein	NA	NA	NA	NA
AVJ71870.1\|2600022_2600136_-	putative ybl82 protein	NA	NA	NA	NA
AVJ70925.1\|2600161_2600350_+	dicB family protein	NA	NA	NA	NA
AVJ69585.1\|2600346_2600538_+	hypothetical protein	NA	NA	NA	NA
AVJ70263.1\|2600631_2603103_+	putative exonuclease VIII	A0A192Y6E0	Salmonella_phage	1.2e-57	56.1
AVJ72352.1\|2603175_2603427_+	hypothetical protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AVJ70085.1\|2603461_2604742_+\|integrase	phage integrase family protein	B6DZ48	Enterobacteria_phage	3.9e-156	62.6
AVJ73574.1\|2604929_2605949_-	zinc-binding dehydrogenase family protein	E3SJ82	Synechococcus_phage	4.3e-17	26.2
AVJ72527.1\|2605960_2607175_-	mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein	Q6A202	Oenococcus_phage	1.4e-46	29.0
2606531:2606546	attR	NA	NA	NA	NA
AVJ69859.1\|2607380_2607707_-	hypothetical protein	A0A218MNG8	uncultured_virus	2.2e-23	54.5
AVJ70215.1\|2607841_2608183_+	hypothetical protein	NA	NA	NA	NA
AVJ73182.1\|2608217_2608778_+	spermidine N(1)-acetyltransferase	NA	NA	NA	NA
AVJ70729.1\|2608780_2609404_-	hypothetical protein	NA	NA	NA	NA
AVJ71402.1\|2609598_2609904_+	hypothetical protein	NA	NA	NA	NA
AVJ71441.1\|2610102_2612529_+	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein	A0A077SK27	Escherichia_phage	1.7e-213	49.2

DBSCAN-SWA_7

2862239 : 2953375

110

Enterobacteria_phage(44.78%)

head,lysis,portal,protease,capsid,terminase,integrase,tail,tRNA

attL 2939222:2939237|attR 2958886:2958901

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ72041.1\|2862239_2863079_-\|protease	protease HtpX	NA	NA	NA	NA
AVJ70594.1\|2863312_2865361_-\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	3.0e-86	33.5
AVJ72743.1\|2865380_2866079_-	proP effector	NA	NA	NA	NA
AVJ73022.1\|2866175_2866673_-	free methionine-R-sulfoxide reductase	NA	NA	NA	NA
AVJ68720.1\|2866802_2868086_+	inner membrane protein YebS	NA	NA	NA	NA
AVJ71632.1\|2868054_2870688_+	mce related family protein	NA	NA	NA	NA
AVJ71104.1\|2870812_2872207_+	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA
AVJ70954.1\|2872324_2872561_+	hypothetical protein	NA	NA	NA	NA
AVJ72855.1\|2872665_2872857_+	hypothetical protein	NA	NA	NA	NA
AVJ69421.1\|2872857_2873514_-	serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	2.8e-57	50.7
AVJ69499.1\|2873909_2874248_-	hypothetical protein	NA	NA	NA	NA
AVJ70142.1\|2874263_2875136_-	inner membrane protein YebZ	NA	NA	NA	NA
AVJ69597.1\|2875139_2875514_-	protein YobA	NA	NA	NA	NA
AVJ71584.1\|2875652_2875883_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
AVJ70989.1\|2875984_2876641_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AVJ70789.1\|2876664_2877327_+	exodeoxyribonuclease 10	Q6UAU3	Klebsiella_phage	2.0e-07	41.6
AVJ70597.1\|2877323_2879384_-\|protease	protease 2	NA	NA	NA	NA
AVJ69622.1\|2879592_2880252_-	inner membrane protein YebE	NA	NA	NA	NA
AVJ72276.1\|2880578_2880935_-	protein YebF	NA	NA	NA	NA
AVJ72081.1\|2881001_2881292_-	yebG family protein	NA	NA	NA	NA
AVJ72078.1\|2881425_2882604_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
AVJ72028.1\|2882658_2883300_-	KHG/KDPG aldolase	NA	NA	NA	NA
AVJ70561.1\|2883336_2885148_-	phosphogluconate dehydratase	NA	NA	NA	NA
AVJ72703.1\|2885382_2886858_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	4.4e-79	37.5
AVJ69357.1\|2887023_2887173_-	hypothetical protein	NA	NA	NA	NA
AVJ68765.1\|2887195_2888065_+	SIS domain protein	NA	NA	NA	NA
AVJ70019.1\|2888192_2889635_+	pyruvate kinase	NA	NA	NA	NA
AVJ73202.1\|2889766_2890738_-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
AVJ71926.1\|2890856_2892179_-	opacity-associated A LysM-like domain protein	A8ATH6	Listeria_phage	1.2e-14	40.9
AVJ70547.1\|2892194_2893127_-	high-affinity zinc uptake system protein ZnuA	NA	NA	NA	NA
AVJ72561.1\|2893205_2893961_+	zinc import ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	1.3e-18	28.3
AVJ71242.1\|2893957_2894743_+	high-affinity zinc uptake system membrane protein ZnuB	NA	NA	NA	NA
AVJ69850.1\|2894892_2895903_-	holliday junction DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
AVJ68607.1\|2895911_2896523_-	holliday junction DNA helicase RuvA	NA	NA	NA	NA
AVJ72579.1\|2896484_2896631_+	hypothetical protein	NA	NA	NA	NA
AVJ69143.1\|2896797_2897400_+	hypothetical protein	NA	NA	NA	NA
AVJ70092.1\|2897401_2897923_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
AVJ72124.1\|2897957_2898698_-	DNA-binding regulatory, YebC/PmpR family protein	NA	NA	NA	NA
AVJ73385.1\|2898726_2899110_-	dihydroneopterin triphosphate pyrophosphatase	NA	NA	NA	NA
AVJ71836.1\|2899296_2901030_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AVJ71955.1\|2901378_2901945_+	isochorismatase family protein	NA	NA	NA	NA
AVJ72683.1\|2902026_2902143_-	hypothetical protein	NA	NA	NA	NA
AVJ69853.1\|2902299_2902548_+	dinI-like family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
AVJ71998.1\|2902663_2903248_-\|tail	caudovirales tail fiber assembly family protein	K7PMH7	Enterobacteria_phage	6.6e-103	94.8
AVJ69656.1\|2903247_2904012_-\|tail	phage tail fiber repeat family protein	K7PHC9	Enterobacteria_phage	1.2e-40	64.7
AVJ68704.1\|2904905_2905046_-	hypothetical protein	NA	NA	NA	NA
AVJ70442.1\|2905039_2905777_+	hypothetical protein	NA	NA	NA	NA
AVJ69510.1\|2906425_2907025_-	outer membrane beta-barrel domain protein	Q9EV15	Enterobacteria_phage	2.0e-107	96.5
AVJ71709.1\|2907092_2910566_-	hypothetical protein	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.5
AVJ70959.1\|2910909_2911491_-\|tail	bacteriophage lambda tail assembly I family protein	Q9EYE5	Enterobacteria_phage	4.0e-92	91.1
AVJ71771.1\|2911487_2912231_-	nlpC/P60 family protein	Q6H9T4	Enterobacteria_phage	2.1e-146	97.2
AVJ70479.1\|2912241_2912880_-\|tail	phage minor tail protein L	A0A0P0ZD44	Stx2-converting_phage	4.2e-119	96.2
AVJ72260.1\|2912939_2913269_-\|tail	phage minor tail family protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
AVJ72229.1\|2913265_2915839_-\|tail	phage tail tape measure protein, lambda family	A0A2R9YJM8	Escherichia_phage	0.0e+00	83.3
AVJ73527.1\|2915819_2916209_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.1e-37	81.7
AVJ70112.1\|2916259_2916691_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	4.8e-42	68.8
AVJ72687.1\|2916704_2917457_-\|tail	phage tail family protein	Q687F6	Enterobacteria_phage	1.2e-133	98.4
AVJ71914.1\|2917464_2917860_-\|tail	minor tail protein U	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
AVJ69586.1\|2917856_2918432_-\|tail	prophage minor tail Z family protein	A0A2R9YJK4	Escherichia_phage	6.4e-50	57.8
AVJ69760.1\|2918447_2918801_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	4.9e-61	97.4
AVJ72037.1\|2918812_2919199_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.2e-52	90.2
AVJ68807.1\|2919240_2920260_-\|capsid	phage major capsid E family protein	A0A2I6TCE5	Escherichia_phage	4.3e-190	98.2
AVJ72397.1\|2920322_2920655_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
AVJ69438.1\|2920664_2921984_-\|protease	clp protease family protein	A0A2I6TC87	Escherichia_phage	2.8e-234	98.9
AVJ70707.1\|2921964_2923566_-\|portal	phage portal protein, lambda family	A0A0K2FJC0	Enterobacteria_phage	7.2e-309	98.9
AVJ72430.1\|2923562_2923769_-\|head,tail	head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AVJ70774.1\|2923765_2925691_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.4
AVJ69506.1\|2925665_2926211_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.2e-79	83.3
AVJ70978.1\|2926652_2927120_-\|lysis	bacteriophage lysis family protein	Q7AYI6	Enterobacteria_phage	7.0e-55	77.9
AVJ73271.1\|2927121_2927259_-	hypothetical protein	Q687G2	Enterobacteria_phage	1.3e-17	97.8
AVJ73370.1\|2927418_2927952_-	phage lysozyme family protein	Q6H9V6	Enterobacteria_phage	7.4e-101	96.0
AVJ73443.1\|2928002_2928347_-	hypothetical protein	A0A0P0ZD64	Stx2-converting_phage	7.2e-57	97.4
AVJ71354.1\|2928351_2928567_-\|lysis	lysis S family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
AVJ71695.1\|2928717_2930571_-	hypothetical protein	H6WZJ9	Escherichia_phage	0.0e+00	91.1
AVJ71957.1\|2931359_2932409_-	DNA methylase family protein	S5MDR0	Escherichia_phage	3.1e-188	91.4
AVJ72975.1\|2932436_2932583_-	hypothetical protein	NA	NA	NA	NA
AVJ69902.1\|2932558_2932756_-	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
AVJ71838.1\|2932918_2933716_-	putative transmembrane protein	A0A0M4R2T6	Salmonella_phage	3.4e-25	32.3
AVJ72634.1\|2933722_2933950_-	hypothetical protein	NA	NA	NA	NA
AVJ72025.1\|2934222_2934912_-	phage antitermination Q family protein	I6PDF8	Cronobacter_phage	2.7e-55	47.2
AVJ72077.1\|2934908_2935232_-	endodeoxyribonuclease RusA family protein	V5URS4	Shigella_phage	5.2e-33	63.8
AVJ70749.1\|2935280_2936198_-	hypothetical protein	U5P0K4	Shigella_phage	3.3e-173	93.8
AVJ69856.1\|2936322_2936580_-	putative bacteriophage protein	Q8W639	Enterobacteria_phage	4.7e-21	68.8
AVJ71280.1\|2936576_2937977_-	dnaB-like helicase N terminal domain protein	Q8W640	Enterobacteria_phage	3.2e-244	91.8
AVJ72939.1\|2937973_2938591_-	istB-like ATP binding family protein	Q8W641	Enterobacteria_phage	9.7e-113	97.1
AVJ68619.1\|2938883_2939840_-	hypothetical protein	Q8W642	Enterobacteria_phage	1.7e-55	96.3
2939222:2939237	attL	NA	NA	NA	NA
AVJ70614.1\|2940162_2940333_-	hypothetical protein	NA	NA	NA	NA
AVJ69869.1\|2940383_2940578_-	hypothetical protein	NA	NA	NA	NA
AVJ72852.1\|2940574_2941426_-	phage regulatory, Rha family protein	A0A1C9IHV9	Salmonella_phage	3.1e-93	66.5
AVJ73259.1\|2941534_2942242_-	phage regulatory Rha family protein	Q8W645	Enterobacteria_phage	3.9e-118	91.1
AVJ69472.1\|2942577_2943234_+	repressor protein C2	Q8W648	Enterobacteria_phage	3.1e-125	97.7
AVJ70896.1\|2943337_2943838_+	helix-turn-helix domain protein	Q8W649	Enterobacteria_phage	1.8e-64	96.2
AVJ69925.1\|2944128_2944335_+	hypothetical protein	Q8W651	Enterobacteria_phage	1.3e-29	94.1
AVJ70356.1\|2944529_2944718_+	hypothetical protein	Q8W652	Enterobacteria_phage	1.8e-09	50.9
AVJ70556.1\|2944780_2945305_+	hypothetical protein	Q8W653	Enterobacteria_phage	3.7e-65	68.1
AVJ71486.1\|2945824_2946139_+	hypothetical protein	B1GS43	Salmonella_phage	2.8e-39	86.0
AVJ70860.1\|2946125_2946308_+	ead/Ea22-like family protein	NA	NA	NA	NA
AVJ72268.1\|2946304_2946646_+	hypothetical protein	A0A076G839	Escherichia_phage	4.5e-27	77.9
AVJ71855.1\|2946806_2947292_+	ead/Ea22-like family protein	A5VWB3	Enterobacteria_phage	1.1e-42	86.1
AVJ70367.1\|2947416_2947809_+	putative upf89.0 protein	G9L6B3	Escherichia_phage	2.5e-74	98.5
AVJ71127.1\|2947805_2947991_+	putative upf89.5 protein	Q1MVF7	Enterobacteria_phage	3.5e-18	88.7
AVJ70960.1\|2948098_2948332_+	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	2.8e-36	100.0
AVJ70570.1\|2948470_2948659_+	hypothetical protein	Q6H9Z8	Enterobacteria_phage	1.3e-20	82.3
AVJ71144.1\|2948662_2948809_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.4e-22	93.8
AVJ71268.1\|2948948_2949065_-	hypothetical protein	NA	NA	NA	NA
AVJ69615.1\|2949109_2950423_+\|integrase	phage integrase family protein	Q8W658	Enterobacteria_phage	4.1e-246	95.6
AVJ73185.1\|2950449_2951175_+	hypothetical protein	Q859D1	Escherichia_coli_phage	5.4e-70	96.9
AVJ68743.1\|2951227_2951623_+	inner membrane protein YecN	NA	NA	NA	NA
AVJ72864.1\|2951663_2952407_+\|tRNA	tRNA (cmo5U34)-methyltransferase	F5B419	Synechococcus_phage	4.6e-24	30.0
AVJ69704.1\|2952403_2953375_+\|tRNA	tRNA (mo5U34)-methyltransferase	NA	NA	NA	NA
2958886:2958901	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3146770 : 3154288

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ70059.1\|3146770_3147319_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	4.4e-48	54.4
AVJ72983.1\|3147323_3148202_-	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	1.9e-106	64.5
AVJ70470.1\|3148259_3149159_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.7e-28	35.1
AVJ72117.1\|3149158_3150244_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.3e-101	54.2
AVJ72921.1\|3150615_3151509_-	regulatory protein GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
AVJ72865.1\|3151740_3152736_-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	A0A1V0QG29	Shearwaterpox_virus	2.5e-09	26.0
AVJ72996.1\|3152893_3154288_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	9.8e-20	31.9

DBSCAN-SWA_9

3201693 : 3254559

Escherichia_phage(35.29%)

plate,head,transposase,lysis,holin,portal,capsid,terminase,integrase,tail

attL 3205982:3206008|attR 3238880:3238906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ70075.1\|3201693_3203097_+	signal transduction histidine-protein kinase BaeS	W8CYF6	Bacillus_phage	2.7e-33	29.4
AVJ69734.1\|3203093_3203816_+	transcriptional regulatory, C terminal family protein	W8CYM9	Bacillus_phage	3.7e-31	33.6
AVJ73175.1\|3203995_3204328_+	hypothetical protein	NA	NA	NA	NA
AVJ71263.1\|3204475_3205837_+	peptidase U32 family protein	Q6DW11	Phage_TP	1.6e-216	99.2
3205982:3206008	attL	NA	NA	NA	NA
AVJ70919.1\|3206409_3207573_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	1.0e-203	98.7
AVJ73152.1\|3207572_3208052_-	phage P2 GpU family protein	Q7Y4C7	Escherichia_virus	4.3e-84	99.4
AVJ70360.1\|3208066_3209668_-\|tail	phage tail tape measure protein, TP901 family, core region	M1T2S3	Escherichia_phage	1.4e-243	93.4
AVJ73474.1\|3209782_3210514_-	hypothetical protein	A0A0F7LCI6	Escherichia_phage	1.3e-119	99.6
AVJ70763.1\|3210658_3210934_-	mu-like prophage FluMu gp41 family protein	A0A0F7LDQ8	Escherichia_phage	2.2e-40	98.9
AVJ69788.1\|3210990_3211509_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.2e-93	99.4
AVJ72591.1\|3211521_3212712_-\|tail	major tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.8e-224	99.2
AVJ71826.1\|3212971_3213157_-	hypothetical protein	Q858R9	Enterobacteria_phage	1.0e-25	96.7
AVJ69021.1\|3214869_3215397_-\|tail	caudovirales tail fiber assembly family protein	U5N0T1	Enterobacteria_phage	1.2e-90	95.4
AVJ73219.1\|3215400_3217719_-\|tail	phage tail-collar fiber family protein	U5N099	Enterobacteria_phage	6.3e-213	68.1
AVJ73243.1\|3217729_3218260_-\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	3.9e-102	99.4
AVJ70310.1\|3218252_3219161_-\|plate	baseplate J-like family protein	U5N3T9	Enterobacteria_phage	1.5e-162	100.0
AVJ68866.1\|3219165_3219513_-	lysozyme family protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
AVJ72590.1\|3219509_3220145_-\|plate	baseplate assembly protein V	U5N3F0	Enterobacteria_phage	8.5e-112	97.6
AVJ69892.1\|3220228_3221014_+	hypothetical protein	NA	NA	NA	NA
AVJ69602.1\|3221085_3221538_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	1.7e-74	97.3
AVJ72073.1\|3221530_3221998_-\|tail	P2 phage tail completion R family protein	U5N0S7	Enterobacteria_phage	7.4e-81	97.4
AVJ73203.1\|3221960_3222119_-	putative protein lysB	A0A0F7LCN5	Escherichia_phage	2.6e-22	100.0
AVJ70904.1\|3222105_3222531_-\|lysis	phage lysis regulatory, LysB family protein	Q858W0	Yersinia_virus	1.0e-65	97.2
AVJ69709.1\|3222518_3222944_-	putative protein lysA	Q858W1	Yersinia_virus	1.5e-59	89.4
AVJ73214.1\|3222958_3223456_-	phage lysozyme family protein	A0A0F7LBS0	Escherichia_phage	1.5e-92	99.4
AVJ72182.1\|3223455_3223737_-\|holin	phage holin 2 family protein	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
AVJ70557.1\|3223740_3223860_-	phage Tail Protein X family protein	A0A0F7LCN2	Escherichia_phage	5.7e-14	97.4
AVJ71150.1\|3223943_3224453_-\|head	phage head completion family protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
AVJ73028.1\|3224552_3225251_-\|terminase	phage small terminase subunit	Q858W5	Yersinia_virus	1.9e-117	98.7
AVJ72388.1\|3225299_3226373_-\|capsid	phage major capsid protein, P2 family	Q94MC7	Enterobacteria_phage	1.9e-201	99.4
AVJ71158.1\|3226431_3227286_-\|capsid	phage capsid scaffolding (GPO) serine peptidase family protein	A0A0F7LA11	Escherichia_phage	1.7e-139	100.0
AVJ69664.1\|3227459_3229232_+\|terminase	ATPase subunit of terminase family protein	A0A0F7LCM8	Escherichia_phage	0.0e+00	99.8
AVJ68808.1\|3229231_3230266_+\|portal	phage portal protein, PBSX family	A0A0F7LDI7	Escherichia_phage	1.9e-201	100.0
AVJ71879.1\|3230304_3230466_-	hypothetical protein	M1TAP7	Escherichia_phage	8.9e-18	94.3
AVJ70734.1\|3230583_3231231_-	putative prophage protein	NA	NA	NA	NA
AVJ70484.1\|3231323_3232055_-	putative orf97	A0A218M4H5	Erwinia_phage	1.0e-108	78.6
AVJ69262.1\|3232284_3232437_-	hypothetical protein	Q2P9X3	Enterobacteria_phage	4.0e-20	95.9
AVJ70040.1\|3232490_3232943_-	hypothetical protein	Q2P9X4	Enterobacteria_phage	3.0e-79	96.0
AVJ69016.1\|3232942_3235228_-	bacteriophage replication protein A	Q7Y4B8	Escherichia_virus	0.0e+00	98.3
AVJ69743.1\|3235217_3235493_-	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
AVJ69314.1\|3235489_3235714_-	phage/conjugal plasmid C-4 type zinc finger, TraR family protein	S4TRY6	Salmonella_phage	2.9e-35	100.0
AVJ73162.1\|3235716_3236016_-	hypothetical protein	S4TUD1	Salmonella_phage	3.5e-44	98.0
AVJ71021.1\|3236015_3236240_-	hypothetical protein	S4TP68	Salmonella_phage	5.2e-32	97.3
AVJ70327.1\|3236303_3236804_-	putative replication gene B protein	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
AVJ72696.1\|3236800_3236971_-	putative orf78	S4TNZ7	Salmonella_phage	6.1e-25	100.0
AVJ71679.1\|3236981_3237236_-	regulatory phage cox family protein	Q1JS62	Enterobacteria_phage	3.5e-45	100.0
AVJ71823.1\|3237786_3238800_+\|integrase	phage integrase family protein	Q83VS6	Escherichia_phage	2.4e-193	98.8
AVJ73006.1\|3239076_3239394_-	hypothetical protein	NA	NA	NA	NA
3238880:3238906	attR	NA	NA	NA	NA
AVJ68682.1\|3239808_3240708_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	4.8e-12	29.0
AVJ70466.1\|3240789_3241524_-	deoR-like helix-turn-helix domain protein	NA	NA	NA	NA
AVJ70230.1\|3241668_3242709_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
AVJ71800.1\|3242756_3243014_-	PTS system, galactitol-specific IIC component domain protein	NA	NA	NA	NA
AVJ69538.1\|3243086_3244295_+\|transposase	transposase DDE domain protein	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
AVJ69530.1\|3244304_3244430_-	bacterial regulatory helix-turn-helix, lysR family protein	NA	NA	NA	NA
AVJ73094.1\|3244660_3245809_-	sodium/glutamate symporter	NA	NA	NA	NA
AVJ69492.1\|3246021_3246147_-	hypothetical protein	NA	NA	NA	NA
AVJ70799.1\|3246622_3247009_+	ACT domain protein	NA	NA	NA	NA
AVJ68724.1\|3247157_3247703_+	putative transcriptional regulator of tet operon	NA	NA	NA	NA
AVJ70055.1\|3247680_3248304_-	tetracycline repressor protein class B from transposon Tn10	NA	NA	NA	NA
AVJ71837.1\|3248409_3249591_+	tetracycline resistance protein, class B	A0A2H4UVM2	Bodo_saltans_virus	1.7e-09	25.0
AVJ69304.1\|3249703_3250297_-	transposon Tn10 TetC protein	NA	NA	NA	NA
AVJ70172.1\|3250384_3250801_+	transposon Tn10 TetD protein	NA	NA	NA	NA
AVJ72313.1\|3251327_3251690_+\|transposase	transposase family protein	Q6H9S5	Enterobacteria_phage	5.6e-36	100.0
AVJ71572.1\|3251686_3252037_+\|transposase	putative transposase	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
AVJ70277.1\|3252067_3253681_+\|transposase	transposase C of IS166 homeodomain protein	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
AVJ71333.1\|3253707_3254559_-\|transposase	transposase DDE domain protein	A4KWT9	Enterobacteria_phage	9.8e-164	100.0

DBSCAN-SWA_10

3289223 : 3298666

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ72082.1\|3289223_3290360_+	VWA domain containing CoxE-like family protein	Q9EYF7	Enterobacteria_phage	2.5e-162	97.4
AVJ72640.1\|3290356_3292357_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
AVJ69786.1\|3292481_3292943_+	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AVJ69833.1\|3292984_3293455_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AVJ72185.1\|3293501_3294221_-	response regulator	NA	NA	NA	NA
AVJ71230.1\|3294217_3295903_-	putative sensor-like histidine kinase YehU	Q9EYF3	Enterobacteria_phage	7.3e-304	99.5
AVJ72740.1\|3296124_3296856_+	merR regulatory family protein	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
AVJ70740.1\|3297003_3297726_-	putative osmoprotectant uptake system permease protein YehW	NA	NA	NA	NA
AVJ68588.1\|3297739_3298666_-	ABC transporter family protein	G3M9Y6	Bacillus_virus	4.8e-23	30.8

DBSCAN-SWA_11

3701897 : 3747116

Escherichia_phage(54.9%)

head,protease,terminase,integrase,tail

attL 3703736:3703752|attR 3744002:3744018

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ69904.1\|3701897_3702038_-	hypothetical protein	G9L6F3	Escherichia_phage	1.1e-16	95.7
AVJ71413.1\|3702115_3702259_+	hypothetical protein	G9L6F2	Escherichia_phage	1.3e-17	100.0
AVJ72790.1\|3702320_3702467_+	hypothetical protein	NA	NA	NA	NA
AVJ72681.1\|3702572_3703088_+	glycine zipper 2TM domain protein	G9L6F1	Escherichia_phage	2.9e-62	99.4
AVJ71621.1\|3703103_3703643_+	hypothetical protein	G9L6F0	Escherichia_phage	1.6e-42	96.6
3703736:3703752	attL	NA	NA	NA	NA
AVJ71435.1\|3703839_3704337_-	hypothetical protein	A0A193GYU6	Enterobacter_phage	6.7e-48	66.5
AVJ69453.1\|3704333_3704963_-	chitinase class I family protein	G9L6E8	Escherichia_phage	2.9e-112	96.7
AVJ70660.1\|3704952_3705261_-	hypothetical protein	G9L6E7	Escherichia_phage	1.3e-49	100.0
AVJ70039.1\|3705247_3705607_-	putative membrane protein	G9L6E6	Escherichia_phage	3.1e-55	96.6
AVJ71446.1\|3705827_3708434_-\|tail	putative tailspike protein	G9L6E4	Escherichia_phage	2.7e-79	65.2
AVJ71661.1\|3708722_3708887_+	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	3.2e-23	100.0
AVJ69588.1\|3709024_3709156_+	ash family protein	NA	NA	NA	NA
AVJ72856.1\|3709579_3709894_+	putative anti-repressor protein	G9L6E2	Escherichia_phage	4.8e-52	99.0
AVJ72943.1\|3710336_3710849_+	toxin YafO, type II toxin-antitoxin system family protein	NA	NA	NA	NA
AVJ70652.1\|3710930_3711092_+	putative transmembrane anchored domain protein	G9L6D9	Escherichia_phage	2.5e-20	100.0
AVJ70208.1\|3711123_3711360_-	putative membrane protein	A0A2R9YJP3	Escherichia_phage	1.1e-40	100.0
AVJ69343.1\|3711615_3714090_-	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	99.3
AVJ70264.1\|3714095_3715898_-	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	0.0e+00	98.0
AVJ70143.1\|3715894_3718345_-	putative prophage MuMc02, structural protein P5	A0A0F6R8M6	Escherichia_coli_O157_typing_phage	0.0e+00	97.3
AVJ72225.1\|3718407_3718953_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	1.8e-86	93.9
AVJ70688.1\|3718952_3719417_-	hypothetical protein	G9L6D1	Escherichia_phage	1.9e-84	99.4
AVJ69020.1\|3719416_3721816_-	hypothetical protein	G9L6D0	Escherichia_phage	0.0e+00	98.7
AVJ72502.1\|3721887_3722493_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.7e-112	99.5
AVJ72278.1\|3722492_3722816_-	hypothetical protein	A0A0F6R8M8	Escherichia_coli_O157_typing_phage	2.6e-53	98.1
AVJ69576.1\|3722866_3723034_-	hypothetical protein	G9L6C7	Escherichia_phage	9.5e-23	100.0
AVJ72920.1\|3723212_3723650_-	hypothetical protein	A0A0F6R7N9	Escherichia_coli_O157_typing_phage	1.4e-70	95.2
AVJ69761.1\|3723701_3724688_-	hypothetical protein	G9L6C5	Escherichia_phage	5.6e-187	99.4
AVJ72207.1\|3724702_3725398_-\|protease	putative endoprotease	G9L6C4	Escherichia_phage	6.0e-95	100.0
AVJ70365.1\|3725400_3725697_-	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
AVJ72769.1\|3725693_3727373_-\|head,tail	bacteriophage head to tail connecting family protein	G9L6C2	Escherichia_phage	8.0e-303	99.3
AVJ70874.1\|3727387_3727570_-	hypothetical protein	G9L6C1	Escherichia_phage	1.5e-05	93.3
AVJ69563.1\|3728345_3729047_+	hypothetical protein	NA	NA	NA	NA
AVJ72485.1\|3729046_3729235_+	hypothetical protein	NA	NA	NA	NA
AVJ69391.1\|3729258_3730728_-\|terminase	putative terminase B large subunit	G9L6B8	Escherichia_phage	6.8e-290	97.8
AVJ69408.1\|3730724_3731435_-\|terminase	terminase small subunit	Q287B7	Escherichia_phage	1.0e-105	85.2
AVJ69700.1\|3731475_3731814_-	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	3.5e-56	96.4
AVJ70318.1\|3731806_3731929_-	putative membrane protein	A0A1B0V7K1	Salmonella_phage	7.7e-06	52.8
AVJ70250.1\|3731928_3732588_-	hypothetical protein	S4TSR6	Salmonella_phage	1.4e-53	61.9
AVJ69205.1\|3732598_3733354_-	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	6.5e-143	93.2
AVJ72506.1\|3733355_3734252_-	ead/Ea22-like family protein	A0A088CC42	Shigella_phage	2.9e-158	88.9
AVJ73297.1\|3734248_3734725_-	hypothetical protein	A0A2I6TCH0	Escherichia_phage	9.4e-31	68.8
AVJ72673.1\|3734786_3735047_-	hypothetical protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.4e-44	97.6
AVJ69910.1\|3735248_3736034_-	replication P family protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	9.3e-153	100.0
AVJ69556.1\|3736030_3736846_-	helix-turn-helix domain protein	Q286X4	Escherichia_phage	1.7e-117	95.6
AVJ72853.1\|3736861_3737062_-	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	1.0e-31	98.5
AVJ69872.1\|3737212_3737443_-	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
AVJ70738.1\|3737597_3738182_+	helix-turn-helix family protein	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
AVJ71278.1\|3738335_3738488_+	hypothetical protein	G9L6A5	Escherichia_phage	5.4e-25	100.0
AVJ69782.1\|3738490_3738790_+	hypothetical protein	G9L6A4	Escherichia_phage	5.8e-47	99.0
AVJ70132.1\|3738786_3739608_+	hypothetical protein	A0A2R9YJH7	Escherichia_phage	1.5e-161	98.5
AVJ71049.1\|3739688_3740546_+	recT family protein	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	2.7e-161	99.3
AVJ72050.1\|3740595_3740844_+	prophage CP4-57 regulatory family protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
AVJ69231.1\|3741245_3741896_+	MT-A70 family protein	G9L699	Escherichia_phage	5.2e-125	96.3
AVJ70397.1\|3741892_3742552_+	serine/threonine-protein phosphatase	K7P6H8	Enterobacteria_phage	4.4e-103	79.5
AVJ70521.1\|3742554_3743811_-\|integrase	phage integrase family protein	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	4.4e-237	99.0
AVJ69309.1\|3744003_3745581_-	GMP synthase	NA	NA	NA	NA
3744002:3744018	attR	NA	NA	NA	NA
AVJ68756.1\|3745649_3747116_-	inosine-5'-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.9

DBSCAN-SWA_12

3964065 : 3971205

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ69315.1\|3964065_3966627_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	9.2e-32	20.8
AVJ70166.1\|3966732_3967389_+	serine/threonine-protein phosphatase 2	A0A077SLQ6	Escherichia_phage	5.0e-51	47.0
AVJ72813.1\|3967439_3968171_-	HTH domain protein	A0A077SK06	Escherichia_phage	2.1e-66	56.2
AVJ73425.1\|3968402_3969311_+	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein	A0A077SLF7	Escherichia_phage	1.1e-117	76.5
AVJ71460.1\|3969307_3970570_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AVJ69692.1\|3970608_3971205_+	class II Aldolase and Adducin N-terminal domain protein	A0A077SK32	Escherichia_phage	2.3e-79	74.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP027133

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

737 : 96780

Escherichia_phage(58.14%)

transposase,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ68489.1\|737_3725_+	putative ddrB	A0A1B0VFX4	Salmonella_phage	0.0e+00	98.9
AVJ68490.1\|3714_4023_+	putative odaA	Q1MVN0	Enterobacteria_phage	2.4e-48	94.1
AVJ68491.1\|4805_6161_-	dGTPase family protein	NA	NA	NA	NA
AVJ68492.1\|6409_6898_-	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	1.3e-64	79.0
AVJ68493.1\|7067_7625_+	lysozyme	Q71TF3	Escherichia_phage	4.2e-107	100.0
AVJ68494.1\|8048_8507_+\|transposase	transposase IS200 like family protein	I4AZI8	Saccharomonospora_phage	2.9e-13	32.3
AVJ68495.1\|8621_9536_-	putative proB	Q71TR6	Escherichia_phage	3.9e-158	96.4
AVJ68496.1\|9753_10884_+\|transposase	transposase, IS605 OrfB family	Q9G0F2	Phage_Gifsy-1	9.2e-186	84.5
AVJ68497.1\|10916_12638_-	putative proA	Q1MVN6	Enterobacteria_phage	0.0e+00	99.5
AVJ68498.1\|12824_19481_+	SNF2 family N-terminal domain protein	Q1MVN7	Enterobacteria_phage	0.0e+00	98.7
AVJ68499.1\|19514_19955_+	hypothetical protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
AVJ68500.1\|20062_20200_+	modulator protein	Q71TG0	Escherichia_phage	4.7e-20	100.0
AVJ68501.1\|20236_21241_-	putative RelA/SpoT domain protein	A0A1B0VBT5	Salmonella_phage	2.9e-138	74.8
AVJ68502.1\|21466_22057_-	hypothetical protein	A0A077SK30	Escherichia_phage	4.8e-101	96.4
AVJ68503.1\|22297_22858_-	recombination enhancement function protein	Q5QBN4	Enterobacteria_phage	1.5e-99	98.9
AVJ68504.1\|23466_24417_-	recombinase cre	Q71TG5	Escherichia_phage	4.1e-179	100.0
AVJ68505.1\|24505_24727_-	putative cre-associated protein	Q5QBN7	Enterobacteria_phage	4.5e-36	100.0
AVJ68506.1\|25643_26495_+	repressor protein C1	A0A077SLM8	Escherichia_phage	1.2e-158	100.0
AVJ68507.1\|26527_27646_-	hypothetical protein	A0A077SLR9	Escherichia_phage	3.7e-179	88.7
AVJ68508.1\|28203_29688_-\|terminase	putative large terminase protein	Q5QBP2	Enterobacteria_phage	4.3e-292	99.8
AVJ68509.1\|29687_30881_-	helix-turn-helix domain protein	A0A077SL59	Escherichia_phage	9.8e-178	99.0
AVJ68510.1\|30966_31419_-	putative late promoter-activating protein	Q71T63	Escherichia_phage	3.0e-79	100.0
AVJ68511.1\|31507_32551_-	hypothetical protein	A0A077SLM1	Escherichia_phage	1.7e-205	99.4
AVJ68512.1\|32578_32758_-	putative pdcA	Q71TH5	Escherichia_phage	1.2e-23	98.3
AVJ68513.1\|32762_33143_-	toxin doc	Q71T66	Escherichia_phage	1.9e-63	100.0
AVJ68514.1\|33142_33364_-	antitoxin phd	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
AVJ68515.1\|33546_35103_+	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	1.4e-104	42.9
AVJ68516.1\|35099_36356_+	type I restriction modification DNA specificity domain protein	NA	NA	NA	NA
AVJ68517.1\|36477_39594_+	type I site-specific deoxyribonuclease, HsdR family protein	A0A220A398	Liberibacter_phage	8.3e-27	24.0
AVJ68518.1\|39673_39844_-	putative membrane domain protein	A0A1B0VBV0	Salmonella_phage	9.7e-15	92.9
AVJ68519.1\|39859_40045_-	putative morphogenetic protein	Q71T77	Escherichia_phage	1.0e-25	98.4
AVJ68520.1\|40438_41701_-	putative pmgS	Q1MVG4	Enterobacteria_phage	2.7e-234	99.8
AVJ68521.1\|42002_42704_-	putative pmgQ	Q1MVG6	Enterobacteria_phage	1.3e-142	99.6
AVJ68522.1\|42700_43378_-	serine/threonine-protein phosphatase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
AVJ68523.1\|43374_44001_-	putative pmgP	A0A077SK52	Escherichia_phage	2.3e-122	99.5
AVJ68524.1\|44502_44619_-	putative hdmA	A0A077SK20	Escherichia_phage	4.7e-13	100.0
AVJ68525.1\|44724_45303_-	VRR-NUC domain protein	A0A077SLK0	Escherichia_phage	2.0e-104	96.9
AVJ68526.1\|45305_45551_-	putative pmgL	A0A1B0VDU5	Salmonella_phage	1.5e-40	100.0
AVJ68527.1\|45697_46075_+	putative 26 protein	Q38620	Escherichia_phage	2.2e-67	100.0
AVJ68528.1\|46084_47302_+	hypothetical protein	A0A077SL53	Escherichia_phage	1.9e-224	99.8
AVJ68529.1\|47305_48034_+	putative upf79.2	A0A077SK19	Escherichia_phage	9.3e-139	100.0
AVJ68530.1\|48020_48806_+	hypothetical protein	A0A1B0V7N6	Salmonella_phage	7.9e-144	99.2
AVJ68531.1\|49026_49824_+	putative upf77.7	Q1MVH7	Enterobacteria_phage	3.4e-150	100.0
AVJ68532.1\|49816_50449_+	putative upf76.8	A0A077SK50	Escherichia_phage	6.9e-90	100.0
AVJ68533.1\|50495_51494_-	glycosyl transferases group 1 family protein	A0A1B0VCH7	Salmonella_phage	3.4e-192	97.6
AVJ68534.1\|51493_52789_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	4.0e-241	100.0
AVJ68535.1\|52848_53064_+	hypothetical protein	NA	NA	NA	NA
AVJ68536.1\|53494_53920_-	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	1.8e-70	100.0
AVJ68537.1\|54431_54548_-	hypothetical protein	A0A1B0VAL9	Salmonella_phage	1.1e-14	97.4
AVJ68538.1\|55477_57670_-	DNA adenine methylase family protein	A0A077SL51	Escherichia_phage	1.8e-23	98.1
AVJ68539.1\|57738_58644_-	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	1.6e-159	99.7
AVJ68540.1\|58999_59119_-	hypothetical protein	NA	NA	NA	NA
AVJ68541.1\|59383_60172_+	putative upfB	Q71TL4	Escherichia_phage	1.0e-119	100.0
AVJ68542.1\|60211_60634_+	putative ppfA	Q71TL5	Escherichia_phage	5.0e-60	100.0
AVJ68543.1\|60668_60800_+	putative membrane lipoprotein	Q71TL6	Escherichia_phage	1.2e-17	100.0
AVJ68544.1\|60809_61202_+	putative upfA	A0A077SLJ1	Escherichia_phage	7.6e-71	97.7
AVJ68545.1\|61537_62422_+	repFIB replication protein A	A0A077SLP3	Escherichia_phage	2.1e-161	100.0
AVJ68546.1\|62714_63524_+	hypothetical protein	A0A077SK46	Escherichia_phage	7.1e-156	97.8
AVJ68547.1\|63740_64889_+	plasmid partition protein A	A0A077SL49	Escherichia_phage	4.6e-217	100.0
AVJ68548.1\|64905_65907_+	parB	Q38420	Escherichia_phage	1.7e-178	100.0
AVJ68549.1\|66133_67840_+	putative upf57.5	Q1MVJ5	Enterobacteria_phage	4.7e-311	94.4
AVJ68550.1\|67900_69490_+	hypothetical protein	Q71TB2	Escherichia_phage	2.9e-302	98.9
AVJ68551.1\|69583_70315_+	putative upf54.2	A0A1B0V835	Salmonella_phage	6.8e-97	99.2
AVJ68552.1\|70427_71159_-	hypothetical protein	NA	NA	NA	NA
AVJ68553.1\|71198_71453_+	putative upf52.7	Q71TM5	Escherichia_phage	5.9e-40	98.8
AVJ68554.1\|71786_72221_+	hypothetical protein	A0A077SLI4	Escherichia_phage	3.0e-76	99.3
AVJ68555.1\|72403_72580_-	hypothetical protein	A0A1B0VDM5	Salmonella_phage	3.3e-10	78.4
AVJ68556.1\|72699_73545_-	putative replication protein repL	Q1MVK3	Enterobacteria_phage	9.4e-151	98.2
AVJ68557.1\|73574_74375_-	kilA-N domain protein	Q1MVK4	Enterobacteria_phage	1.9e-148	100.0
AVJ68558.1\|74539_75061_-	phage antirepressor KilAC domain protein	Q71TC1	Escherichia_phage	1.4e-88	99.4
AVJ68559.1\|75194_75377_+	putative membrane protein	NA	NA	NA	NA
AVJ68560.1\|75579_75801_-	putative cell division repressor	A0A077SLM6	Escherichia_phage	1.3e-38	100.0
AVJ68561.1\|76381_76699_+	putative simB	Q71TC5	Escherichia_phage	2.9e-28	100.0
AVJ68562.1\|76706_77486_+	putative simC	Q71TC6	Escherichia_phage	9.3e-145	96.1
AVJ68563.1\|78027_78300_+	putative tubA	Q1MVL0	Enterobacteria_phage	3.9e-42	98.9
AVJ68564.1\|78310_78922_+	putative tubB	Q71TN8	Escherichia_phage	2.9e-109	99.5
AVJ68565.1\|78886_79000_-	hypothetical protein	NA	NA	NA	NA
AVJ68566.1\|79014_79818_+	putative pmgB	Q71TC9	Escherichia_phage	3.8e-157	98.5
AVJ68567.1\|79771_79888_+	hypothetical protein	NA	NA	NA	NA
AVJ68568.1\|79899_83595_+	transglycosylase SLT domain protein	A0A1B0VDM8	Salmonella_phage	0.0e+00	85.8
AVJ68569.1\|83594_83951_+	putative pmgA	Q71TP1	Escherichia_phage	1.0e-61	100.0
AVJ68570.1\|83947_85381_+	putative bplA	A0A1B0VAD6	Salmonella_phage	1.1e-271	99.8
AVJ68571.1\|85380_86217_+	putative pep42	A0A1B0V7F2	Salmonella_phage	1.4e-154	100.0
AVJ68572.1\|86559_86730_+\|tail	putative tail fiber protein R	Q71TD4	Escherichia_phage	1.1e-23	98.2
AVJ68573.1\|86741_89666_+	hypothetical protein	A0A1B0V7G4	Salmonella_phage	3.8e-13	44.7
AVJ68574.1\|89781_90105_+\|tail	putative tail fiber protein	K7PH60	Enterobacterial_phage	2.6e-32	61.0
AVJ68575.1\|90115_90574_+	phage Tail Collar domain protein	A0A0F7LCR3	Escherichia_phage	1.4e-44	57.4
AVJ68576.1\|90573_91185_+\|tail	caudovirales tail fiber assembly family protein	M1SV83	Escherichia_phage	3.6e-83	78.6
AVJ68577.1\|91190_91688_-	phage Tail Collar domain protein	K7P7Q7	Enterobacteria_phage	2.9e-43	57.3
AVJ68578.1\|92819_93515_-	hypothetical protein	U5N099	Enterobacteria_phage	2.2e-12	93.2
AVJ68579.1\|94180_94882_-\|tail	phage tail fiber repeat family protein	A0A1B0V7G4	Salmonella_phage	1.5e-80	97.5
AVJ68580.1\|95067_95238_-\|tail	putative tail fiber protein R	Q71TD4	Escherichia_phage	1.1e-23	98.2
AVJ68581.1\|95622_96180_-	putative pep42	A0A1B0V7F2	Salmonella_phage	1.9e-99	100.0
AVJ68582.1\|96405_96780_-	bplA domain protein	Q71TP2	Escherichia_phage	7.8e-57	91.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP027129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

327 : 5193

Escherichia_phage(44.44%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ68276.1\|327_654_+	hypothetical protein	M1SV83	Escherichia_phage	6.8e-41	76.6
AVJ68277.1\|711_852_+\|tail	caudovirales tail fiber assembly family protein	Q9MCR5	Enterobacteria_phage	1.7e-09	85.7
AVJ68278.1\|1447_1924_-	phage Tail Collar domain protein	A0A0F7LCR3	Escherichia_phage	2.4e-47	59.4
AVJ68279.1\|2334_2568_+	helix-turn-helix domain of resolvase family protein	A0A0A7NPV4	Enterobacteria_phage	2.9e-25	88.1
AVJ68280.1\|3105_3267_+	putative lydC domain protein	A0A1B0VBS6	Salmonella_phage	1.0e-10	68.8
AVJ68281.1\|3554_3671_+	putative lydA	Q37876	Escherichia_phage	8.0e-13	100.0
AVJ68282.1\|3667_4111_+	putative lydB	A0A077SK09	Escherichia_phage	1.3e-82	100.0
AVJ68283.1\|4097_4700_+	hypothetical protein	Q1MVM6	Enterobacteria_phage	5.4e-100	100.0
AVJ68284.1\|4701_5193_+	darA domain protein	Q1MVM7	Enterobacteria_phage	1.5e-87	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP027130

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2755 : 85441

Escherichia_phage(36.11%)

transposase,protease,integrase

attL 6648:6707|attR 52888:53708

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ68405.1\|2755_3274_-\|transposase	putative transposase	A0A0P0ZEB3	Stx2-converting_phage	6.5e-94	99.4
AVJ68321.1\|3431_4094_-	istB-like ATP binding family protein	A0A2L1IVB6	Escherichia_phage	9.7e-119	100.0
AVJ68425.1\|4210_5233_-	helix-turn-helix family protein	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
AVJ68473.1\|5246_6005_-\|transposase	helix-turn-helix domain of transposase IS66 family protein	A0A0P0ZBS5	Stx2-converting_phage	9.1e-129	96.9
AVJ68326.1\|6006_6264_-\|transposase	transposase C of IS166 homeodomain protein	A0A0P0ZEB3	Stx2-converting_phage	2.3e-31	97.4
AVJ68292.1\|6312_6606_-\|transposase	putative transposase	A0A0P0ZDM8	Stx2-converting_phage	2.9e-51	100.0
6648:6707	attL	NA	NA	NA	NA
AVJ68394.1\|6711_7416_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ68338.1\|7540_7948_+	resolvase, N terminal domain protein	A0A219YA40	Aeromonas_phage	6.8e-14	36.3
AVJ68333.1\|8132_8690_+	osmC-like family protein	NA	NA	NA	NA
AVJ68305.1\|8831_9413_+	bacterial regulatory, tetR family protein	NA	NA	NA	NA
AVJ68301.1\|9417_9756_+	alkylhydroperoxidase AhpD family core domain protein	NA	NA	NA	NA
AVJ68313.1\|9785_10115_-	thioredoxin-like domain protein	V9SJ74	Achromobacter_phage	1.3e-10	34.7
AVJ68391.1\|10328_11435_+	flavin oxidoreductase / NADH oxidase family protein	NA	NA	NA	NA
AVJ68431.1\|11500_12202_+	DSBA-like thioredoxin domain protein	NA	NA	NA	NA
AVJ68387.1\|12267_13041_+	KR domain protein	NA	NA	NA	NA
AVJ68379.1\|13226_14450_-	aminotransferase class I and II family protein	NA	NA	NA	NA
AVJ68300.1\|14580_15453_-	eamA-like transporter family protein	NA	NA	NA	NA
AVJ68451.1\|15694_16447_+	alpha/beta hydrolase family protein	NA	NA	NA	NA
AVJ68327.1\|16886_17891_+\|transposase	transposase family protein	NA	NA	NA	NA
AVJ68372.1\|18311_19055_-	histidine phosphatase super family protein	NA	NA	NA	NA
AVJ68373.1\|19176_19662_-	winged helix-turn-helix DNA-binding family protein	NA	NA	NA	NA
AVJ68410.1\|19686_20157_-	thioredoxin-like family protein	NA	NA	NA	NA
AVJ68422.1\|20158_20854_-	ABC transporter family protein	G9BWD6	Planktothrix_phage	7.5e-29	38.9
AVJ68424.1\|20858_21971_-	macB-like periplasmic core domain protein	NA	NA	NA	NA
AVJ68416.1\|21978_23262_-	macB-like periplasmic core domain protein	NA	NA	NA	NA
AVJ68419.1\|23264_24644_-	hypothetical protein	NA	NA	NA	NA
AVJ68470.1\|24747_25269_-	Fe2+ transport family protein	NA	NA	NA	NA
AVJ68323.1\|25315_27232_-	iron permease FTR1 family protein	NA	NA	NA	NA
AVJ68367.1\|27432_27552_-	hypothetical protein	NA	NA	NA	NA
AVJ68462.1\|27548_28310_-	ubiquinone oxidoreductase, Na(+)-translocating, C subunit	NA	NA	NA	NA
AVJ68320.1\|28302_28431_+	hypothetical protein	NA	NA	NA	NA
AVJ68335.1\|28546_29053_-	thioredoxin-like family protein	NA	NA	NA	NA
AVJ68331.1\|29042_29201_-	DSBA-like thioredoxin domain protein	NA	NA	NA	NA
AVJ68382.1\|29350_29482_-	hypothetical protein	A0A077SL39	Escherichia_phage	3.2e-10	97.0
AVJ68459.1\|29857_30361_+\|transposase	putative transposase	Q71TF0	Escherichia_phage	4.5e-92	96.4
AVJ68463.1\|30411_31539_+\|transposase	transposase DDE domain protein	Q9E8P4	Bluetongue_virus	3.1e-218	99.7
AVJ68378.1\|31548_31965_-	transposon Tn10 TetD protein	NA	NA	NA	NA
AVJ68435.1\|32052_32646_+	transposon Tn10 TetC protein	NA	NA	NA	NA
AVJ68461.1\|32758_33940_-	tetracycline resistance protein, class B	NA	NA	NA	NA
AVJ68294.1\|34045_34669_+	tetracycline repressor protein class B from transposon Tn10	NA	NA	NA	NA
AVJ68475.1\|34646_35192_-	putative transcriptional regulator of tet operon	NA	NA	NA	NA
AVJ68364.1\|35340_35727_-	ACT domain protein	NA	NA	NA	NA
AVJ68324.1\|35979_36483_-\|transposase	putative transposase	Q71TF0	Escherichia_phage	1.5e-95	100.0
AVJ68409.1\|36710_36875_-	hypothetical protein	NA	NA	NA	NA
AVJ68351.1\|36865_37570_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ68421.1\|37603_37747_-\|transposase	transposase domain protein	NA	NA	NA	NA
AVJ68389.1\|38623_39100_-	erythromycin resistance repressor protein	NA	NA	NA	NA
AVJ68466.1\|39207_40446_-	major Facilitator Superfamily protein	NA	NA	NA	NA
AVJ68296.1\|40442_41348_-	phosphotransferase enzyme family protein	NA	NA	NA	NA
AVJ68369.1\|41469_42174_-\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVJ68481.1\|42198_42333_+	insertion sequence IS4321 domain protein	NA	NA	NA	NA
AVJ68377.1\|42914_43754_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AVJ68371.1\|44300_45089_-	nucleotidyltransferase domain protein	NA	NA	NA	NA
AVJ68299.1\|45850_46864_+\|integrase	integron integrase family protein	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AVJ68468.1\|46850_47369_-	putative cytosine-specific DNA methylase	NA	NA	NA	NA
AVJ68330.1\|47393_48098_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVJ68332.1\|48172_49120_+\|transposase	transposase DDE domain group 1 family protein	A0A1B0VDR3	Salmonella_phage	9.9e-40	100.0
AVJ68302.1\|49100_49223_+	hypothetical protein	NA	NA	NA	NA
AVJ68380.1\|49375_50251_+	beta-lactamase CTX-M-1	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AVJ68383.1\|50297_50570_-	cupin fold metallo, WbuC family protein	NA	NA	NA	NA
AVJ68359.1\|51423_52905_+\|transposase	tn3 transposase DDE domain protein	Q1MVP5	Enterobacteria_phage	1.5e-284	99.8
AVJ68390.1\|52951_53656_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ68285.1\|54446_54650_-\|transposase	putative transposase	NA	NA	NA	NA
52888:53708	attR	NA	NA	NA	NA
AVJ68298.1\|55404_56265_-	aminoglycoside 3-N-acetyltransferase family protein	NA	NA	NA	NA
AVJ68303.1\|56371_57076_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ68304.1\|57707_58538_-	beta-lactamase OXA-1	NA	NA	NA	NA
AVJ68480.1\|59366_60071_-\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ68329.1\|60061_60676_+\|transposase	tn3 transposase DDE domain protein	A0A1B0V7H9	Salmonella_phage	1.1e-89	98.2
AVJ68420.1\|60672_61278_-	resolvase, N terminal domain protein	A0A1S5Y2X8	uncultured_archaeal_virus	9.4e-20	35.3
AVJ68288.1\|61372_64270_+	hypothetical protein	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
AVJ68465.1\|64406_64739_-	mRNA interferase PemK	NA	NA	NA	NA
AVJ68366.1\|64740_64959_-	antitoxin PemI	NA	NA	NA	NA
AVJ68474.1\|65090_65744_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AVJ68314.1\|65740_65863_-	hypothetical protein	NA	NA	NA	NA
AVJ68411.1\|66682_67540_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AVJ68454.1\|68503_69526_+\|transposase	transposase family protein	NA	NA	NA	NA
AVJ68437.1\|69997_70351_+	putative membrane protein	NA	NA	NA	NA
AVJ68381.1\|70763_71264_-	hypothetical protein	NA	NA	NA	NA
AVJ68429.1\|71568_72072_+\|transposase	putative transposase	U5P0U6	Shigella_phage	1.7e-94	99.4
AVJ68317.1\|72186_72543_+\|transposase	transposase family protein	Q6H9S5	Enterobacteria_phage	5.7e-33	89.5
AVJ68291.1\|72539_72890_+\|transposase	putative transposase	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
AVJ68401.1\|72920_73142_+	hypothetical protein	NA	NA	NA	NA
AVJ68342.1\|73249_73435_+\|transposase	putative transposase	A0A0P0ZBS5	Stx2-converting_phage	2.9e-20	70.7
AVJ68386.1\|73498_73978_-	arginine repressor, C-terminal domain protein	NA	NA	NA	NA
AVJ68388.1\|74058_75462_-	C4-dicarboxylate anaerobic carrier family protein	NA	NA	NA	NA
AVJ68356.1\|75509_76514_-	ornithine carbamoyltransferase	NA	NA	NA	NA
AVJ68347.1\|76598_77462_-	amino acid kinase family protein	NA	NA	NA	NA
AVJ68433.1\|77520_78741_-	arginine deiminase	NA	NA	NA	NA
AVJ68478.1\|79401_79548_-	hypothetical protein	NA	NA	NA	NA
AVJ68452.1\|79582_79828_+	pre-toxin domain with VENN motif family protein	NA	NA	NA	NA
AVJ68385.1\|79830_79950_+	putative adhesin/hemagglutinin/hemolysin domain protein	NA	NA	NA	NA
AVJ68286.1\|80055_80508_-	incFII RepA family protein	NA	NA	NA	NA
AVJ68289.1\|80962_81202_+	hypothetical protein	NA	NA	NA	NA
AVJ68350.1\|81744_81924_-	hypothetical protein	NA	NA	NA	NA
AVJ68346.1\|82075_82303_+	insA N-terminal domain protein	Q71TE9	Escherichia_phage	5.4e-37	97.3
AVJ68352.1\|82681_84253_-\|transposase	transposase C of IS166 homeodomain protein	A0A0P0ZEB3	Stx2-converting_phage	4.9e-169	58.5
AVJ68436.1\|84359_84539_+	hypothetical protein	NA	NA	NA	NA
AVJ68471.1\|84619_84925_-\|transposase	transposase family protein	A0A0P0ZCV4	Stx2-converting_phage	3.9e-14	44.6
AVJ68446.1\|85273_85441_+\|transposase	putative transposase	U5P0U6	Shigella_phage	7.8e-09	100.0

DBSCAN-SWA_2

159284 : 166010

Cedratvirus(16.67%)

transposase,integrase

attL 149341:149355|attR 166465:166479

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
149341:149355	attL	NA	NA	NA	NA
AVJ68482.1\|159284_160112_-	ABC transporter family protein	A0A1M7XV31	Cedratvirus	3.6e-14	27.0
AVJ68442.1\|160111_160903_-	periplasmic solute binding family protein	NA	NA	NA	NA
AVJ68393.1\|161575_162079_+\|transposase	putative transposase	U5P0U6	Shigella_phage	3.7e-94	99.4
AVJ68374.1\|162258_162495_-	hypothetical protein	F1C5A5	Cronobacter_phage	3.1e-19	57.9
AVJ68404.1\|162905_163238_-	homeo-like domain protein	U5N3F9	Enterobacteria_phage	2.8e-50	98.0
AVJ68361.1\|164007_164985_+	repFIB replication protein A	J9Q7H0	Salmonella_phage	4.6e-101	63.9
AVJ68345.1\|165269_166010_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
166465:166479	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027134

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP027133

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP027129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. CP027130

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection