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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP021325 Listeria monocytogenes strain NH1 chromosome, complete genome 2 crisprs DinG,cas3,WYL,casR,DEDDh,csa3 0 1 7 0

Results visualization

1. CP021325
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021325_2 536868-537156 Orphan I-A
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021325_3 2837430-2837540 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP021325_2 2.3|537027|35|CP021325|PILER-CR,CRISPRCasFinder,CRT 537027-537061 35 MH341453 Listeria phage PSU-VKH-LP041, complete genome 10139-10173 1 0.971
CP021325_2 2.3|537027|35|CP021325|PILER-CR,CRISPRCasFinder,CRT 537027-537061 35 NC_009813 Listeria phage B054, complete genome 10139-10173 2 0.943

1. spacer 2.3|537027|35|CP021325|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaa	Protospacer
*****************.*****************

2. spacer 2.3|537027|35|CP021325|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaa	Protospacer
*****************.**.**************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 120423 : 126948 10 Listeria_phage(33.33%) tail NA
DBSCAN-SWA_2 670048 : 706293 45 Listeria_phage(51.61%) capsid,head,portal,integrase,tail,holin,terminase attL 677270:677284|attR 681640:681654
DBSCAN-SWA_3 1151062 : 1158485 8 Hokovirus(33.33%) NA NA
DBSCAN-SWA_4 1272534 : 1315276 56 Listeria_phage(91.3%) capsid,head,portal,integrase,tail,holin,terminase attL 1272418:1272434|attR 1315388:1315404
DBSCAN-SWA_5 1886714 : 1895000 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 2394106 : 2450223 79 Listeria_phage(92.73%) capsid,protease,tail,holin,terminase NA
DBSCAN-SWA_7 2593512 : 2601356 7 Streptococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage