CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP019681	Salmonella enterica subsp. enterica serovar Enteritidis strain SE86 chromosome, complete genome	2 crisprs	WYL,DinG,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	15	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP019681_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019681_1

2960995-2961511

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

8 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP019681_1

>merge|CP019681|1|2960995-2961511|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACACTATTTATAAGCGTGTCATCTATGCAACCCAACCGGTTTATCCCCGCTGGCGCGGGGAACACACCTGCCCGACCCAATAAGGGGGCCCTCGTGACGGTTTATCCCCGCTGGCGCGGGGAACACGGCCGCTGGTCAAATTCCCAATCTGAGCAATCCGGTTTATCCCCGCTGGCGCGGGGAACACATAGCCCCGGCAGCGATAGCTAAACCAGTTCCCGGTTTATCCCCGCTGGCGCGGGGAACACGCCTCAAAATCTCTCGGTGAGATGTAAGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACACACCAGTGGTCAGCGGCGGATGAATTTGCCCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGAATGCTCATGCGCGTGAGCGCCATATATTCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGGACCGAAAAACCGTTTTCAGCCAACGTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP019681|1|1|2960995-2961511|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAC	TATTTATAAGCGTGTCATCTATGCAACCCAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCGCTGGTCAAATTCCCAATCTGAGCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAGCCCCGGCAGCGATAGCTAAACCAGTTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAATGCTCATGCGCGTGAGCGCCATATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGGACCGAAAAACCGTTTTCAGCCAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP019681|1|1|2960995-2961511|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAC	TATTTATAAGCGTGTCATCTATGCAACCCAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCGCTGGTCAAATTCCCAATCTGAGCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAGCCCCGGCAGCGATAGCTAAACCAGTTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAATGCTCATGCGCGTGAGCGCCATATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGGACCGAAAAACCGTTTTCAGCCAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP019681|1|1|2960997-2961511|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACTA	TTTATAAGCGTGTCATCTATGCAACCCAACCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	CTGCCCGACCCAATAAGGGGGCCCTCGTGACG
GTTTATCCCCGCTGGCGCGGGGAACACGG	CCGCTGGTCAAATTCCCAATCTGAGCAATCCG
GTTTATCCCCGCTGGCGCGGGGAACACAT	AGCCCCGGCAGCGATAGCTAAACCAGTTCCCG
GTTTATCCCCGCTGGCGCGGGGAACACGC	CTCAAAATCTCTCGGTGAGATGTAAGCGTCCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	CAGTGGTCAGCGGCGGATGAATTTGCCCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	GAATGCTCATGCGCGTGAGCGCCATATATTCG
GTTTATCCCCGCTGGCGCGGGGAACACAG	GCGGACCGAAAAACCGTTTTCAGCCAACGTCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP019681.1\|AVL14813.1\|2956359_2956716_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP019681.1\|AVL14809.1\|2953603_2954653_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP019681.1\|AVL14822.1\|2964206_2965265_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP019681.1\|AVL14811.1\|2955128_2955839_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP019681.1\|AVL14817.1\|2959933_2960980_+\|Zn-dependent-exopeptidase-M28	unknown	unknown	gnl\|CDD\|182299
CP019681.1\|AVL14814.1\|2956733_2957339_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP019681.1\|AVL14826.1\|2970116_2970389_+\|hypothetical-protein	unknown	unknown	unknown
CP019681.1\|AVL14808.1\|2952861_2953623_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP019681.1\|AVL14818.1\|2961607_2961901_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP019681.1\|AVL14815.1\|2957325_2958765_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP019681.1\|AVL14810.1\|2954649_2955129_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP019681.1\|AVL14820.1\|2962817_2963468_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP019681.1\|AVL14821.1\|2963449_2964196_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP019681.1\|AVL14823.1\|2965278_2965833_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP019681.1\|AVL14819.1\|2961900_2962821_-\|subtype-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP019681.1\|AVL16482.1\|2970504_2971458_+\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP019681.1\|AVL14825.1\|2967397_2970061_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP019681.1\|AVL14816.1\|2958774_2959683_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP019681.1\|AVL14824.1\|2965829_2967386_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP019681.1\|AVL14812.1\|2955857_2956169_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156

Protein	Function_ID	Function_description	E-value
CP019681.1\|AVL14813.1\|2956359_2956716_-\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP019681.1\|AVL14809.1\|2953603_2954653_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP019681.1\|AVL14822.1\|2964206_2965265_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
CP019681.1\|AVL14811.1\|2955128_2955839_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
CP019681.1\|AVL14817.1\|2959933_2960980_+\|Zn-dependent-exopeptidase-M28	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP019681.1\|AVL14814.1\|2956733_2957339_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.43771e-146
CP019681.1\|AVL14808.1\|2952861_2953623_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP019681.1\|AVL14818.1\|2961607_2961901_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP019681.1\|AVL14815.1\|2957325_2958765_-\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP019681.1\|AVL14810.1\|2954649_2955129_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
CP019681.1\|AVL14820.1\|2962817_2963468_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
CP019681.1\|AVL14821.1\|2963449_2964196_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
CP019681.1\|AVL14823.1\|2965278_2965833_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
CP019681.1\|AVL14819.1\|2961900_2962821_-\|subtype-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
CP019681.1\|AVL16482.1\|2970504_2971458_+\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP019681.1\|AVL14825.1\|2967397_2970061_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP019681.1\|AVL14816.1\|2958774_2959683_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP019681.1\|AVL14824.1\|2965829_2967386_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP019681.1\|AVL14812.1\|2955857_2956169_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64

>CP019681.1|AVL14817.1|2959933_2960980_+|Zn-dependent-exopeptidase-M28
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP019681.1|AVL14816.1|2958774_2959683_-|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP019681.1|AVL14815.1|2957325_2958765_-|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP019681.1|AVL14814.1|2956733_2957339_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRQRDIIRS
>CP019681.1|AVL14813.1|2956359_2956716_-|hypothetical-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP019681.1|AVL14812.1|2955857_2956169_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP019681.1|AVL14811.1|2955128_2955839_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP019681.1|AVL14810.1|2954649_2955129_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP019681.1|AVL14809.1|2953603_2954653_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP019681.1|AVL14808.1|2952861_2953623_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP019681.1|AVL14818.1|2961607_2961901_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP019681.1|AVL14819.1|2961900_2962821_-|subtype-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP019681.1|AVL14820.1|2962817_2963468_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP019681.1|AVL14821.1|2963449_2964196_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP019681.1|AVL14822.1|2964206_2965265_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>CP019681.1|AVL14823.1|2965278_2965833_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>CP019681.1|AVL14824.1|2965829_2967386_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP019681.1|AVL14825.1|2967397_2970061_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP019681.1|AVL14826.1|2970116_2970389_+|hypothetical-protein
MLIYLTKIALPEIIFKYAAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP019681.1|AVL16482.1|2970504_2971458_+|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT

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Crispr_ID: CP019681_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019681_2

2977663-2978302

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CNGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

10 spacers

cas3

The CRISPR arrays of CP019681_2

>merge|CP019681|2|2977663-2978302|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACGGCTACACGCAAAAATTCCAGTCGTTGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACCCGATTAAGATCCGCAGTCTGCATCAGTAACTCGGTTTATCCCCGCTGGCGAGGGGAACACCGATTCTACGGCAACAGGCCAGGCTGCGACCGCGGTTTATCCCCGCTGGCGCGGGGAACACATCAAACATGGAAACCCCTTTAATGAGAGCAACGGTTTATCCCCGCTGGCGCGGGGAACACTCAGGAACGCGCGGCGGAAGAGCTTGGTGTTTGCGGTTTATCCCCGCTGGCGCGGGGAACACGCTGCCTTTCCCGGAGTTCCGGCCCCTAAATTGGGTTTATCCCCGCTGGCGCGGGGAACACTCATGCGCTATAAAAATCAGACTGTCACATGCCGGTTTATCCCCGCTGGCGCGGGGAACACTGATTATTGACGACAACAGCACAGACCGGCAGCAGTTTATCCCCGCTGGCGCGGGGAACACAATAATCGGCAATTTGTCCTGGACAGGCACGGCAGTTTATCCCCGCTGGCGCGGGGAACACGAATCTGGAGGCCAACAGCGCGGCGAAATCCTCAGTTTATCCCCGCTGGCGCGGGGAACAC

>CP019681|2|2|2977663-2978302|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAGGAACGCGCGGCGGAAGAGCTTGGTGTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGCCTTTCCCGGAGTTCCGGCCCCTAAATT
GGGTTTATCCCCGCTGGCGCGGGGAACAC	TCATGCGCTATAAAAATCAGACTGTCACATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATTATTGACGACAACAGCACAGACCGGCAG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCT
CAGTTTATCCCCGCTGGCGCGGGGAACAC

>CP019681|2|2|2977663-2978302|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAGGAACGCGCGGCGGAAGAGCTTGGTGTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGCCTTTCCCGGAGTTCCGGCCCCTAAATT
GGGTTTATCCCCGCTGGCGCGGGGAACAC	TCATGCGCTATAAAAATCAGACTGTCACATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATTATTGACGACAACAGCACAGACCGGCAG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCT
CAGTTTATCCCCGCTGGCGCGGGGAACAC

>CP019681|2|2|2977726-2978302|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACTCG
GTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAACG
GTTTATCCCCGCTGGCGCGGGGAACAC	TCAGGAACGCGCGGCGGAAGAGCTTGGTGTTTGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	GCTGCCTTTCCCGGAGTTCCGGCCCCTAAATTGG
GTTTATCCCCGCTGGCGCGGGGAACAC	TCATGCGCTATAAAAATCAGACTGTCACATGCCG
GTTTATCCCCGCTGGCGCGGGGAACAC	TGATTATTGACGACAACAGCACAGACCGGCAGCA
GTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGGCA
GTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP019681.1\|AVL14835.1\|2982651_2983452_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP019681.1\|AVL14833.1\|2979405_2980704_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP019681.1\|AVL14832.1\|2978598_2979270_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP019681.1\|AVL14829.1\|2974093_2975893_-\|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component	unknown	unknown	gnl\|CDD\|182862
CP019681.1\|AVL14838.1\|2987438_2988212_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP019681.1\|AVL16483.1\|2972206_2972425_+\|hypothetical-protein	unknown	unknown	unknown
CP019681.1\|AVL14827.1\|2971545_2972280_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP019681.1\|AVL14826.1\|2970116_2970389_+\|hypothetical-protein	unknown	unknown	unknown
CP019681.1\|AVL14831.1\|2976766_2977564_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP019681.1\|AVL14840.1\|2988752_2989223_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP019681.1\|AVL14828.1\|2972381_2974094_-\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
CP019681.1\|AVL14836.1\|2984059_2984647_+\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP019681.1\|AVL14837.1\|2984726_2987426_+\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|185176
CP019681.1\|AVL16482.1\|2970504_2971458_+\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP019681.1\|AVL14825.1\|2967397_2970061_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP019681.1\|AVL14830.1\|2976316_2976679_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP019681.1\|AVL16484.1\|2976217_2976388_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP019681.1\|AVL14839.1\|2988231_2988738_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP019681.1\|AVL14834.1\|2980786_2982424_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP019681.1\|AVL14841.1\|2989219_2989756_+\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168

Protein	Function_ID	Function_description	E-value
CP019681.1\|AVL14833.1\|2979405_2980704_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP019681.1\|AVL14832.1\|2978598_2979270_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP019681.1\|AVL14829.1\|2974093_2975893_-\|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP019681.1\|AVL14838.1\|2987438_2988212_+\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP019681.1\|AVL14827.1\|2971545_2972280_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
CP019681.1\|AVL14831.1\|2976766_2977564_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
CP019681.1\|AVL14840.1\|2988752_2989223_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
CP019681.1\|AVL14828.1\|2972381_2974094_-\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP019681.1\|AVL14836.1\|2984059_2984647_+\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP019681.1\|AVL14837.1\|2984726_2987426_+\|fimbrial-assembly-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP019681.1\|AVL16482.1\|2970504_2971458_+\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP019681.1\|AVL14825.1\|2967397_2970061_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP019681.1\|AVL14830.1\|2976316_2976679_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP019681.1\|AVL14835.1\|2982651_2983452_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
CP019681.1\|AVL14839.1\|2988231_2988738_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP019681.1\|AVL14834.1\|2980786_2982424_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP019681.1\|AVL14841.1\|2989219_2989756_+\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121

>CP019681.1|AVL14831.1|2976766_2977564_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP019681.1|AVL14830.1|2976316_2976679_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP019681.1|AVL16484.1|2976217_2976388_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP019681.1|AVL14829.1|2974093_2975893_-|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWCWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP019681.1|AVL14828.1|2972381_2974094_-|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVAITDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP019681.1|AVL16483.1|2972206_2972425_+|hypothetical-protein
MVSANASTRSTFGSSFRAFRSSLDISSSRYTLPDGASLIRPTRAVGRIRHLCRHPAIQVIPRNHARDRAPGE
>CP019681.1|AVL14827.1|2971545_2972280_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP019681.1|AVL16482.1|2970504_2971458_+|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP019681.1|AVL14826.1|2970116_2970389_+|hypothetical-protein
MLIYLTKIALPEIIFKYAAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP019681.1|AVL14825.1|2967397_2970061_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP019681.1|AVL14832.1|2978598_2979270_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP019681.1|AVL14833.1|2979405_2980704_-|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP019681.1|AVL14834.1|2980786_2982424_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP019681.1|AVL14835.1|2982651_2983452_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP019681.1|AVL14836.1|2984059_2984647_+|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP019681.1|AVL14837.1|2984726_2987426_+|fimbrial-assembly-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQPPPIPLADNHAVNRKDME
>CP019681.1|AVL14838.1|2987438_2988212_+|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP019681.1|AVL14839.1|2988231_2988738_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP019681.1|AVL14840.1|2988752_2989223_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP019681.1|AVL14841.1|2989219_2989756_+|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP019681_2	2.5\|2977936\|33\|CP019681\|CRISPRCasFinder,CRT	2977936-2977968	33	NZ_CP032236	Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence	63403-63435	4	0.879
CP019681_2	2.5\|2977936\|33\|CP019681\|CRISPRCasFinder,CRT	2977936-2977968	33	NZ_LN681230	Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence	91355-91387	4	0.879
CP019681_2	2.14\|2977936\|35\|CP019681\|PILER-CR	2977936-2977970	35	NZ_CP032236	Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence	63403-63437	5	0.857
CP019681_2	2.14\|2977936\|35\|CP019681\|PILER-CR	2977936-2977970	35	NZ_LN681230	Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence	91353-91387	5	0.857
CP019681_2	2.15\|2977998\|34\|CP019681\|PILER-CR	2977998-2978031	34	NZ_CP044178	Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1	18967-19000	5	0.853
CP019681_2	2.15\|2977998\|34\|CP019681\|PILER-CR	2977998-2978031	34	CP053324	Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence	25136-25169	5	0.853
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP044178	Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1	18969-19000	6	0.812
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	CP053324	Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence	25138-25169	6	0.812
CP019681_2	2.15\|2977998\|34\|CP019681\|PILER-CR	2977998-2978031	34	NZ_LN890526	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence	31716-31749	6	0.824
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_LN890526	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence	31718-31749	7	0.781
CP019681_2	2.3\|2977814\|32\|CP019681\|CRISPRCasFinder,CRT	2977814-2977845	32	MN694003	Marine virus AFVG_250M677, complete genome	17629-17660	8	0.75
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	329022-329053	8	0.75
CP019681_2	2.8\|2978120\|32\|CP019681\|CRISPRCasFinder,CRT	2978120-2978151	32	MG592432	Vibrio phage 1.050.O._10N.286.48.A6, partial genome	21687-21718	8	0.75
CP019681_2	2.8\|2978120\|32\|CP019681\|CRISPRCasFinder,CRT	2978120-2978151	32	MG592431	Vibrio phage 1.049.O._10N.286.54.B5, partial genome	21426-21457	8	0.75
CP019681_2	2.12\|2977814\|34\|CP019681\|PILER-CR	2977814-2977847	34	MN694003	Marine virus AFVG_250M677, complete genome	17627-17660	8	0.765
CP019681_1	1.1\|2961024\|32\|CP019681\|CRISPRCasFinder,CRT	2961024-2961055	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
CP019681_1	1.3\|2961146\|32\|CP019681\|CRISPRCasFinder,CRT	2961146-2961177	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
CP019681_1	1.3\|2961146\|32\|CP019681\|CRISPRCasFinder,CRT	2961146-2961177	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
CP019681_1	1.3\|2961146\|32\|CP019681\|CRISPRCasFinder,CRT	2961146-2961177	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
CP019681_1	1.3\|2961146\|32\|CP019681\|CRISPRCasFinder,CRT	2961146-2961177	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
CP019681_1	1.7\|2961390\|32\|CP019681\|CRISPRCasFinder,CRT	2961390-2961421	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
CP019681_1	1.9\|2961026\|32\|CP019681\|PILER-CR	2961026-2961057	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
CP019681_1	1.11\|2961148\|32\|CP019681\|PILER-CR	2961148-2961179	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
CP019681_1	1.11\|2961148\|32\|CP019681\|PILER-CR	2961148-2961179	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
CP019681_1	1.11\|2961148\|32\|CP019681\|PILER-CR	2961148-2961179	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
CP019681_1	1.11\|2961148\|32\|CP019681\|PILER-CR	2961148-2961179	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
CP019681_1	1.15\|2961392\|32\|CP019681\|PILER-CR	2961392-2961423	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
CP019681_2	2.5\|2977936\|33\|CP019681\|CRISPRCasFinder,CRT	2977936-2977968	33	NZ_CP031947	Ruegeria sp. AD91A plasmid unnamed1, complete sequence	143751-143783	9	0.727
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP048340	Escherichia coli strain 142 plasmid p142_C, complete sequence	2410-2441	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_LR130559	Escherichia coli strain MS14385 isolate MS14385 plasmid 5	41882-41913	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP020518	Escherichia coli strain 222 plasmid unnamed2, complete sequence	13450-13481	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP020497	Escherichia coli strain 103 plasmid unnamed2, complete sequence	37140-37171	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP040921	Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence	32060-32091	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence	19381-19412	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP042622	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-7, complete sequence	2614-2645	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_LT985302	Escherichia coli strain ECOR 39 genome assembly, plasmid: RCS82_pI	11943-11974	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP028194	Escherichia coli strain CFSAN018748 plasmid pGMI14-004_3, complete sequence	15383-15414	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP024865	Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence	22646-22677	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	AP019710	Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome	4361-4392	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP024829	Escherichia coli strain CREC-544 plasmid pCREC-544_3, complete sequence	2221-2252	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP009861	Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence	2868-2899	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	CP025877	Escherichia coli strain 503458 plasmid p503458_49, complete sequence	18343-18374	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	4914-4945	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP032259	Escherichia coli strain AR_0067 plasmid unnamed2, complete sequence	23402-23433	9	0.719
CP019681_2	2.6\|2977998\|32\|CP019681\|CRISPRCasFinder,CRT	2977998-2978029	32	NZ_CP037450	Escherichia coli strain ATCC 25922 plasmid unnamed, complete sequence	15851-15882	9	0.719
CP019681_2	2.8\|2978120\|32\|CP019681\|CRISPRCasFinder,CRT	2978120-2978151	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	34441-34472	9	0.719
CP019681_2	2.10\|2978242\|32\|CP019681\|CRISPRCasFinder,CRT	2978242-2978273	32	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	405613-405644	9	0.719
CP019681_2	2.4\|2977875\|32\|CP019681\|CRISPRCasFinder,CRT	2977875-2977906	32	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	103231-103262	10	0.688
CP019681_2	2.10\|2978242\|32\|CP019681\|CRISPRCasFinder,CRT	2978242-2978273	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	699963-699994	10	0.688
CP019681_2	2.14\|2977936\|35\|CP019681\|PILER-CR	2977936-2977970	35	NZ_CP031947	Ruegeria sp. AD91A plasmid unnamed1, complete sequence	143751-143785	11	0.686

1. spacer 2.5|2977936|33|CP019681|CRISPRCasFinder,CRT matches to NZ_CP032236 (Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence) position: , mismatch: 4, identity: 0.879

tcaggaacgcgcggcggaagagcttggtgtttg	CRISPR spacer
tcaggaacgcgcagcggaagagcttggtaaatg	Protospacer
************.***************.  **

2. spacer 2.5|2977936|33|CP019681|CRISPRCasFinder,CRT matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 4, identity: 0.879

tcaggaacgcgcggcggaagagcttggtgtttg	CRISPR spacer
tcaggaacgcgcagcggaagagcttggtaaatg	Protospacer
************.***************.  **

3. spacer 2.14|2977936|35|CP019681|PILER-CR matches to NZ_CP032236 (Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence) position: , mismatch: 5, identity: 0.857

tcaggaacgcgcggcggaagagcttggtgtttgcg	CRISPR spacer
tcaggaacgcgcagcggaagagcttggtaaatgcc	Protospacer
************.***************.  ***

4. spacer 2.14|2977936|35|CP019681|PILER-CR matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 5, identity: 0.857

tcaggaacgcgcggcggaagagcttggtgtttgcg	CRISPR spacer
tcaggaacgcgcagcggaagagcttggtaaatgcc	Protospacer
************.***************.  ***

5. spacer 2.15|2977998|34|CP019681|PILER-CR matches to NZ_CP044178 (Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1) position: , mismatch: 5, identity: 0.853

gctgcctttcccggagttccggcccct----aaattgg	CRISPR spacer
ggtgcctttcccggagttccggccccttctcaaa----	Protospacer
* *************************    ***

6. spacer 2.15|2977998|34|CP019681|PILER-CR matches to CP053324 (Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.853

gctgcctttcccggagttccggcccct----aaattgg	CRISPR spacer
ggtgcctttcccggagttccggccccttctcaaa----	Protospacer
* *************************    ***

7. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP044178 (Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1) position: , mismatch: 6, identity: 0.812

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
ggtgcctttcccggagttccggccccttctca	Protospacer
* *************************   .

8. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to CP053324 (Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
ggtgcctttcccggagttccggccccttctca	Protospacer
* *************************   .

9. spacer 2.15|2977998|34|CP019681|PILER-CR matches to NZ_LN890526 (Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.824

gctgcctttcccggagttccggcccct----aaattgg	CRISPR spacer
ggtgccttttccggagttccggccccttctcaaa----	Protospacer
* *******.*****************    ***

10. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_LN890526 (Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.781

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
ggtgccttttccggagttccggccccttctca	Protospacer
* *******.*****************   .

11. spacer 2.3|2977814|32|CP019681|CRISPRCasFinder,CRT matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.75

cgattctacggcaacaggccaggctgcgaccg	CRISPR spacer
ggcgagcacggcaacagcccaggctgcgatcg	Protospacer
 *    .********** ***********.**

12. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP053022 (Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence) position: , mismatch: 8, identity: 0.75

gctgcctttcccggagttccggcccctaaatt---	CRISPR spacer
tatgcctttcccggctttccggccc---aactgac	Protospacer
  ************  *********   **.*

13. spacer 2.8|2978120|32|CP019681|CRISPRCasFinder,CRT matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
ttataattgactacaacagcacagagcagatt	Protospacer
* ** ****** ************* *.*

14. spacer 2.8|2978120|32|CP019681|CRISPRCasFinder,CRT matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
ttataattgactacaacagcacagagcagatt	Protospacer
* ** ****** ************* *.*

15. spacer 2.12|2977814|34|CP019681|PILER-CR matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.765

cgattctacggcaacaggccaggctgcgaccgcg	CRISPR spacer
ggcgagcacggcaacagcccaggctgcgatcgcg	Protospacer
 *    .********** ***********.****

16. spacer 1.1|2961024|32|CP019681|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

tatttataagcgtgtcatctatgcaacccaac	CRISPR spacer
aatttataatcatgtcatctatgccataattc	Protospacer
 ******** *.************ *.    *

17. spacer 1.3|2961146|32|CP019681|CRISPRCasFinder,CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

18. spacer 1.3|2961146|32|CP019681|CRISPRCasFinder,CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

19. spacer 1.3|2961146|32|CP019681|CRISPRCasFinder,CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

20. spacer 1.3|2961146|32|CP019681|CRISPRCasFinder,CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

21. spacer 1.7|2961390|32|CP019681|CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

gagaatgctcatgcgcgtgagcgccatatatt	CRISPR spacer
cgaaatgatcatgcgcgtcagcgccattgcgt	Protospacer
 ..**** ********** ********    *

22. spacer 1.9|2961026|32|CP019681|PILER-CR matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

tatttataagcgtgtcatctatgcaacccaac	CRISPR spacer
aatttataatcatgtcatctatgccataattc	Protospacer
 ******** *.************ *.    *

23. spacer 1.11|2961148|32|CP019681|PILER-CR matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

24. spacer 1.11|2961148|32|CP019681|PILER-CR matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

25. spacer 1.11|2961148|32|CP019681|PILER-CR matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

26. spacer 1.11|2961148|32|CP019681|PILER-CR matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

27. spacer 1.15|2961392|32|CP019681|PILER-CR matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

gagaatgctcatgcgcgtgagcgccatatatt	CRISPR spacer
cgaaatgatcatgcgcgtcagcgccattgcgt	Protospacer
 ..**** ********** ********    *

28. spacer 2.5|2977936|33|CP019681|CRISPRCasFinder,CRT matches to NZ_CP031947 (Ruegeria sp. AD91A plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tcaggaacgcgcggcggaagagcttggtgtttg	CRISPR spacer
ctttgcccgtgcggcggaagaccttggtgtttc	Protospacer
..  *  **.*********** **********

29. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP048340 (Escherichia coli strain 142 plasmid p142_C, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

30. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_LR130559 (Escherichia coli strain MS14385 isolate MS14385 plasmid 5) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

31. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP020518 (Escherichia coli strain 222 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

32. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP020497 (Escherichia coli strain 103 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

33. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP040921 (Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

34. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to CP053252 (Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

35. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP042622 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-7, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

36. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_LT985302 (Escherichia coli strain ECOR 39 genome assembly, plasmid: RCS82_pI) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

37. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP028194 (Escherichia coli strain CFSAN018748 plasmid pGMI14-004_3, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

38. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP024865 (Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

39. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to AP019710 (Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

40. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP024829 (Escherichia coli strain CREC-544 plasmid pCREC-544_3, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

41. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP009861 (Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

42. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to CP025877 (Escherichia coli strain 503458 plasmid p503458_49, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

43. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

44. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP032259 (Escherichia coli strain AR_0067 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

45. spacer 2.6|2977998|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP037450 (Escherichia coli strain ATCC 25922 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gctgcctttcccggagttccggcccctaaatt	CRISPR spacer
gtgccctttaccggagttccggccccttctca	Protospacer
*.  ***** *****************   .

46. spacer 2.8|2978120|32|CP019681|CRISPRCasFinder,CRT matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
agcttattgacgaaaacggcacagacaccaaa	Protospacer
 * ********** ***.********    *.

47. spacer 2.10|2978242|32|CP019681|CRISPRCasFinder,CRT matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 9, identity: 0.719

gaatctggaggccaacagcgcggcgaaatcct	CRISPR spacer
gaatctggagggcgacagcgcggtcgaccctg	Protospacer
*********** *.*********. .* .*.

48. spacer 2.4|2977875|32|CP019681|CRISPRCasFinder,CRT matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

atcaaacatggaaacccctttaatgagagcaa	CRISPR spacer
ctaaaacatggaaaccactgtaatgacgaatc	Protospacer
 * ************* ** ****** ..

49. spacer 2.10|2978242|32|CP019681|CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

gaatctggaggccaacagcgcggcgaaatcct	CRISPR spacer
gtggtcataggccatcagcgcggcgatatccc	Protospacer
* . ... ****** *********** ****.

50. spacer 2.14|2977936|35|CP019681|PILER-CR matches to NZ_CP031947 (Ruegeria sp. AD91A plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

tcaggaacgcgcggcggaagagcttggtgtttgcg	CRISPR spacer
ctttgcccgtgcggcggaagaccttggtgtttctc	Protospacer
..  *  **.*********** ********** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

934408 : 941721

Dickeya_phage(16.67%)

protease,integrase

attL 923146:923160|attR 941939:941953

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
923146:923160	attL	NA	NA	NA	NA
AVL12900.1\|934408_935527_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
AVL12901.1\|935523_937470_+	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
AVL12902.1\|937450_937645_+	hypothetical protein	NA	NA	NA	NA
AVL12903.1\|937599_937821_-	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AVL12904.1\|938144_938465_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AVL12905.1\|938495_940772_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AVL12906.1\|940984_941182_-	hypothetical protein	NA	NA	NA	NA
AVL12907.1\|941343_941721_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
941939:941953	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1013000 : 1024225

Salmonella_phage(36.36%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL12959.1\|1013000_1013411_-	enterohemolysin	H6WRX0	Salmonella_phage	5.0e-33	100.0
AVL12960.1\|1013431_1014061_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.6e-75	65.9
AVL12961.1\|1014044_1014671_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
AVL12962.1\|1014667_1016377_+\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
AVL12963.1\|1016376_1016958_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AVL12964.1\|1016961_1017210_-\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.1e-18	66.2
AVL12965.1\|1017435_1018404_+	secreted effector protein SseI	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
AVL12966.1\|1018671_1018920_+	hypothetical protein	A0A0P0ZEB3	Stx2-converting_phage	1.5e-24	68.8
AVL12967.1\|1019051_1019678_-	DUF159 family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AVL12968.1\|1020037_1020724_-	virulence protein	NA	NA	NA	NA
AVL12969.1\|1020994_1021186_-	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AVL12970.1\|1021612_1024225_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8

DBSCAN-SWA_3

1197800 : 1249900

Enterobacteria_phage(22.22%)

tail,holin,integrase,terminase,lysis,tRNA

attL 1225926:1225955|attR 1245547:1245576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL13154.1\|1197800_1199573_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AVL13155.1\|1199675_1200128_+	NUDIX pyrophosphatase	NA	NA	NA	NA
AVL13156.1\|1200157_1200898_+	transcriptional regulator	NA	NA	NA	NA
AVL13157.1\|1200934_1201456_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
AVL13158.1\|1201457_1202057_-	hypothetical protein	NA	NA	NA	NA
AVL16409.1\|1202283_1202958_+	hypothetical protein	NA	NA	NA	NA
AVL13159.1\|1203317_1203929_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AVL13160.1\|1203937_1204948_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.4e-07	26.4
AVL13161.1\|1205026_1205812_-	zinc ABC transporter permease	NA	NA	NA	NA
AVL13162.1\|1205808_1206564_-	Mn2+/Zn2+ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.5e-18	29.4
AVL13163.1\|1206627_1207587_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
AVL13164.1\|1207602_1208922_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	2.6e-14	40.9
AVL13165.1\|1208812_1209040_-	hypothetical protein	NA	NA	NA	NA
AVL13166.1\|1209038_1210010_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AVL13167.1\|1210082_1211525_-	pyruvate kinase II	NA	NA	NA	NA
AVL13168.1\|1211648_1212518_-	transcriptional regulator HexR	NA	NA	NA	NA
AVL13169.1\|1212701_1212887_-	hypothetical protein	NA	NA	NA	NA
AVL13170.1\|1212859_1214335_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
AVL13171.1\|1214569_1216381_+	phosphogluconate dehydratase	NA	NA	NA	NA
AVL13172.1\|1216418_1217060_+	keto-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
AVL13173.1\|1217159_1218338_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
AVL13174.1\|1218468_1218759_+	damage-inducible protein YebG	NA	NA	NA	NA
AVL13175.1\|1218826_1219180_+	hypothetical protein	NA	NA	NA	NA
AVL13176.1\|1219273_1219933_+	protein YebE	NA	NA	NA	NA
AVL13177.1\|1220145_1222197_+	oligopeptidase B	NA	NA	NA	NA
AVL13178.1\|1222233_1222932_-	DNA polymerase III subunit epsilon	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
AVL13179.1\|1222955_1223612_-	carbon-nitrogen hydrolase	NA	NA	NA	NA
AVL13180.1\|1223719_1223950_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AVL13181.1\|1224081_1224462_+	hypothetical protein	NA	NA	NA	NA
AVL13182.1\|1224462_1225338_+	hypothetical protein	NA	NA	NA	NA
AVL13183.1\|1225354_1225708_+	hypothetical protein	NA	NA	NA	NA
1225926:1225955	attL	NA	NA	NA	NA
AVL13184.1\|1226090_1227170_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-101	52.5
AVL16410.1\|1227144_1227417_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
AVL13185.1\|1227836_1229816_+	hypothetical protein	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
AVL13186.1\|1229833_1230025_-	hypothetical protein	NA	NA	NA	NA
AVL13187.1\|1230447_1230753_+	hypothetical protein	NA	NA	NA	NA
AVL13188.1\|1230816_1231416_+	hypothetical protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
AVL13189.1\|1231412_1231640_+	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
AVL13190.1\|1231769_1232459_+	antiterminator	I6PDF8	Cronobacter_phage	2.1e-60	54.9
AVL16411.1\|1232555_1233080_+	hypothetical protein	NA	NA	NA	NA
AVL13191.1\|1233453_1233903_-	hypothetical protein	NA	NA	NA	NA
AVL13192.1\|1234263_1234950_-	virulence protein	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
AVL13193.1\|1235219_1235555_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	4.1e-57	100.0
AVL13194.1\|1235541_1235991_+	muraminidase	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AVL16412.1\|1236008_1236488_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
AVL13195.1\|1236695_1237010_+	hypothetical protein	Q8VNN8	Enterobacteria_phage	9.9e-21	49.5
AVL13196.1\|1237382_1237916_-	Superoxide dismutase [Cu-Zn] 1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AVL13197.1\|1238005_1238701_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
AVL13198.1\|1238710_1238992_+	cell wall hydrolase	A0A0N7KZA3	Stx2-converting_phage	1.0e-29	66.3
AVL13199.1\|1242755_1243478_-	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AVL13200.1\|1243957_1244758_-	hypothetical protein	NA	NA	NA	NA
AVL13201.1\|1246615_1247269_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	3.2e-29	69.8
1245547:1245576	attR	NA	NA	NA	NA
AVL13202.1\|1247299_1247530_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
AVL13203.1\|1247583_1248117_+	hypothetical protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
AVL13204.1\|1248373_1248541_-	lytic enzyme	NA	NA	NA	NA
AVL13205.1\|1248605_1248794_-	hypothetical protein	NA	NA	NA	NA
AVL13206.1\|1248848_1249340_+	DNA breaking-rejoining protein	Q9EYD0	Enterobacteria_phage	7.1e-42	56.2
AVL13207.1\|1249326_1249506_+\|tail	phage tail protein	Q9EYD1	Enterobacteria_phage	2.7e-07	53.2
AVL13208.1\|1249525_1249900_+\|terminase	terminase	Q8VNN7	Enterobacteria_phage	1.1e-58	82.1

DBSCAN-SWA_4

1466630 : 1482574

Escherichia_phage(64.71%)

integrase,tRNA

attL 1478271:1478284|attR 1481724:1481737

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL13417.1\|1466630_1468004_+	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	32.0
AVL13418.1\|1468047_1468983_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.2e-144	97.3
AVL13419.1\|1469299_1469917_-	exodeoxyribonuclease	A0A088CD28	Shigella_phage	2.5e-36	41.9
AVL13420.1\|1469944_1470262_-	hypothetical protein	NA	NA	NA	NA
AVL13421.1\|1470346_1470568_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
AVL13422.1\|1470773_1470971_+	hypothetical protein	NA	NA	NA	NA
AVL13423.1\|1471005_1471527_+	hypothetical protein	NA	NA	NA	NA
AVL13424.1\|1471634_1471799_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.1e-06	46.8
AVL13425.1\|1472174_1472642_-	transcriptional regulator	A0A0U2QW76	Escherichia_phage	1.0e-53	66.9
AVL13426.1\|1472914_1473244_+	DNA-binding protein	A0A0U2QQN3	Escherichia_phage	6.5e-23	51.7
AVL13427.1\|1473405_1473960_-	hypothetical protein	NA	NA	NA	NA
AVL13428.1\|1473956_1474889_-	hypothetical protein	NA	NA	NA	NA
AVL13429.1\|1475258_1475471_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
AVL13430.1\|1475994_1476594_+	hypothetical protein	A0A0U2RT94	Escherichia_phage	5.5e-97	82.9
AVL13431.1\|1476593_1476884_+	hypothetical protein	A0A0U2KD41	Escherichia_phage	5.1e-40	76.0
AVL13432.1\|1476880_1477417_+	antiterminator	A0A0U2S606	Escherichia_phage	1.4e-70	70.9
1478271:1478284	attL	NA	NA	NA	NA
AVL13433.1\|1479587_1479983_+	hypothetical protein	Q71TK7	Escherichia_phage	4.7e-44	88.9
AVL16426.1\|1479904_1480093_+	hypothetical protein	Q8W636	Enterobacteria_phage	9.4e-11	57.4
AVL13434.1\|1480082_1480364_+	hypothetical protein	K7PKN9	Enterobacterial_phage	1.3e-16	49.4
AVL13435.1\|1480360_1480906_+	hypothetical protein	A0A0U2S643	Escherichia_phage	2.3e-89	83.4
AVL13436.1\|1481447_1481639_-\|integrase	integrase	A0A0U2JGI6	Escherichia_phage	1.6e-29	96.8
AVL13437.1\|1481606_1481759_+	multidrug transporter	NA	NA	NA	NA
1481724:1481737	attR	NA	NA	NA	NA
AVL13438.1\|1481751_1482090_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AVL13439.1\|1482139_1482574_-	universal stress protein F	A0A1W6JNV4	Morganella_phage	9.4e-30	52.1

DBSCAN-SWA_5

2014765 : 2062261

Salmonella_phage(78.18%)

portal,plate,capsid,integrase,terminase,tail,transposase

attL 2059654:2059668|attR 2065980:2065994

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL13951.1\|2014765_2015788_-\|transposase	IS110 family transposase ISSaen1	NA	NA	NA	NA
AVL13952.1\|2016249_2017068_-	hypothetical protein	NA	NA	NA	NA
AVL13953.1\|2017094_2017472_-	hypothetical protein	NA	NA	NA	NA
AVL13954.1\|2017864_2018047_-	hypothetical protein	NA	NA	NA	NA
AVL13955.1\|2018410_2018632_-	DNA-binding protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
AVL13956.1\|2018844_2019852_+	non-LEE encoded effector protein NleB	Q8HAB2	Salmonella_phage	7.9e-197	100.0
AVL13957.1\|2020136_2020706_-\|tail	phage tail protein	Q8HAB3	Salmonella_phage	7.3e-107	100.0
AVL13958.1\|2020705_2022268_-\|tail	phage tail protein	Q8HAB4	Salmonella_phage	9.8e-287	99.8
AVL13959.1\|2022254_2022842_-\|tail	phage tail protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
AVL13960.1\|2022844_2023924_-\|plate	phage baseplate protein	A0A192Y6E4	Salmonella_phage	2.5e-204	99.7
AVL13961.1\|2023916_2024330_-	hypothetical protein	Q8HAB8	Salmonella_phage	1.1e-75	100.0
AVL13962.1\|2024334_2024868_-\|plate	baseplate assembly protein	Q8HAB9	Salmonella_phage	2.1e-95	99.4
AVL13963.1\|2024867_2025926_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
AVL13964.1\|2025922_2027263_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	1.1e-249	99.1
AVL13965.1\|2027296_2029225_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.5
AVL13966.1\|2029309_2029636_-\|tail	phage tail protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
AVL13967.1\|2029632_2029989_-\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
AVL13968.1\|2029988_2031485_-\|tail	phage tail protein	Q8HAC5	Salmonella_phage	3.0e-277	99.2
AVL13969.1\|2031474_2031639_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
AVL13970.1\|2031642_2032203_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.0e-105	99.5
AVL13971.1\|2032199_2032712_-	hypothetical protein	Q8HAC8	Salmonella_phage	1.4e-85	93.5
AVL13972.1\|2032683_2033088_-\|tail	phage tail protein	A0A192Y6C2	Salmonella_phage	1.5e-69	96.3
AVL13973.1\|2033084_2033408_-	hypothetical protein	Q8SBH7	Shigella_phage	2.6e-40	72.0
AVL13974.1\|2033487_2034717_-\|capsid	phage capsid protein	Q8SBH8	Shigella_phage	1.8e-206	90.9
AVL13975.1\|2034726_2035329_-	peptidase	Q8SBH9	Shigella_phage	2.0e-99	91.5
AVL13976.1\|2035321_2036539_-\|portal	phage portal protein	A0A1W6JP33	Morganella_phage	7.6e-194	79.4
AVL13977.1\|2036687_2038418_-\|terminase	terminase	Q8W631	Enterobacteria_phage	3.2e-198	58.9
AVL13978.1\|2038417_2038855_-\|terminase	terminase	A0A1J0GV10	Halomonas_phage	1.6e-32	63.7
AVL13979.1\|2039001_2039352_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	3.1e-63	95.7
AVL13980.1\|2039375_2039915_-	hypothetical protein	A0A0A0P0G7	Enterobacteria_phage	5.3e-06	37.2
AVL13981.1\|2039911_2040529_-	endolysin	Q8HA86	Salmonella_phage	3.2e-92	78.9
AVL13982.1\|2040528_2040810_-	hypothetical protein	K7PKN9	Enterobacterial_phage	3.3e-36	80.6
AVL13983.1\|2040796_2041186_-	hypothetical protein	K7PHB9	Enterobacterial_phage	1.8e-40	71.0
AVL13984.1\|2041274_2041847_-	hypothetical protein	NA	NA	NA	NA
AVL13985.1\|2041859_2042933_-	hypothetical protein	NA	NA	NA	NA
AVL13986.1\|2042982_2043735_-	antitermination protein	A0A192Y5X6	Salmonella_phage	1.9e-134	92.0
AVL13987.1\|2043748_2044702_-	hypothetical protein	A0A1C9IHZ5	Salmonella_phage	7.3e-184	97.5
AVL13988.1\|2044745_2045606_-	DNA-binding protein	A0A192Y6F8	Salmonella_phage	1.5e-159	98.3
AVL13989.1\|2045622_2046012_-	hypothetical protein	A0A1C9IIA0	Salmonella_phage	1.9e-69	99.2
AVL13990.1\|2046020_2046902_-	DNA methylase	A0A1C9II58	Salmonella_phage	8.3e-166	96.2
AVL13991.1\|2046898_2047372_-	hypothetical protein	A0A1C9IHW0	Salmonella_phage	3.9e-53	94.6
AVL13992.1\|2047368_2048343_-	hypothetical protein	A0A1C9IHW0	Salmonella_phage	1.2e-165	97.8
AVL13993.1\|2048339_2048564_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AVL13994.1\|2048560_2049718_-	peptidase	Q8HA97	Salmonella_phage	2.8e-214	98.4
AVL13995.1\|2049714_2050269_-	hypothetical protein	A0A1C9II13	Salmonella_phage	3.4e-101	98.9
AVL13996.1\|2050297_2050522_-	transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AVL13997.1\|2050460_2050646_-	hypothetical protein	NA	NA	NA	NA
AVL13998.1\|2050619_2051315_+	transcriptional regulator	Q8HAA0	Salmonella_phage	2.7e-127	99.6
AVL13999.1\|2051520_2051706_+	hypothetical protein	A0A1C9II97	Salmonella_phage	1.2e-13	73.3
AVL16451.1\|2051633_2051882_+	hypothetical protein	NA	NA	NA	NA
AVL14000.1\|2051781_2052033_-	bssS family protein	NA	NA	NA	NA
AVL16452.1\|2052042_2052504_-	hypothetical protein	A0A1C9IHY8	Salmonella_phage	2.9e-21	84.5
AVL14001.1\|2052602_2053520_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	1.3e-97	59.7
AVL14002.1\|2053614_2054154_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AVL14003.1\|2054224_2054455_+	hypothetical protein	Q8HAA4	Salmonella_phage	2.0e-34	100.0
AVL14004.1\|2054451_2054967_+	hypothetical protein	A0A2H4FWH2	Salmonella_phage	1.3e-94	96.5
AVL14005.1\|2054963_2055323_+	Eaf protein	T1SA95	Salmonella_phage	1.0e-58	89.9
AVL14006.1\|2055594_2055888_+	hypothetical protein	A0A1V0E5L2	Salmonella_phage	1.5e-50	100.0
AVL14007.1\|2055884_2056748_+	hypothetical protein	S4TSR6	Salmonella_phage	5.2e-64	49.2
AVL14008.1\|2056744_2057314_+	exonuclease	A0A192Y6E0	Salmonella_phage	9.3e-110	99.5
AVL16453.1\|2057353_2057581_+	hypothetical protein	Q8HAA9	Salmonella_phage	3.2e-37	100.0
AVL14009.1\|2057582_2058572_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AVL14010.1\|2058863_2059661_+	protein MtfA	NA	NA	NA	NA
2059654:2059668	attL	NA	NA	NA	NA
AVL14011.1\|2060032_2060323_+\|integrase	integrase	H2BDA3	Pseudomonas_phage	1.2e-07	49.1
AVL16454.1\|2060986_2062261_+	recombinase	B7SYF8	Stenotrophomonas_phage	2.4e-73	39.9
2065980:2065994	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2175184 : 2185691

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL14125.1\|2175184_2176498_-	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AVL14126.1\|2176524_2177604_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
AVL14127.1\|2177608_2178382_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AVL14128.1\|2178397_2179372_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AVL14129.1\|2179377_2179929_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AVL14130.1\|2179929_2180808_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.1e-108	65.5
AVL14131.1\|2180855_2181755_-	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AVL14132.1\|2181754_2182840_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AVL14133.1\|2183216_2184110_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AVL14134.1\|2184287_2185691_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5

DBSCAN-SWA_7

2252889 : 2262060

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL14188.1\|2252889_2254923_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
AVL14189.1\|2255163_2255622_+	hypothetical protein	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
AVL14190.1\|2255793_2256324_+	lipoprotein	NA	NA	NA	NA
AVL14191.1\|2256380_2256848_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	4.3e-73	89.7
AVL14192.1\|2256894_2257614_-	DNA-binding response regulator	NA	NA	NA	NA
AVL14193.1\|2257610_2259296_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AVL14194.1\|2259518_2260250_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.5e-99	86.9
AVL14195.1\|2260309_2260417_+	hypothetical protein	NA	NA	NA	NA
AVL14196.1\|2260397_2261129_-	ABC transporter permease	NA	NA	NA	NA
AVL14197.1\|2261112_2262060_-	ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP019681

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection