CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP027416	Salmonella enterica subsp. enterica strain FDAARGOS_320 plasmid unnamed3	0 crisprs	NA	0
CP027415	Salmonella enterica subsp. enterica strain FDAARGOS_320 plasmid unnamed1, complete sequence	0 crisprs	cas14j	1
CP027413	Salmonella enterica subsp. enterica strain FDAARGOS_320 plasmid unnamed2, complete sequence	0 crisprs	cas14j	1
CP027414	Salmonella enterica subsp. enterica strain FDAARGOS_320 chromosome, complete genome	0 crisprs	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20046 : 46524

Stx2-converting_phage(27.27%)

integrase,transposase

attL 17526:17540|attR 43561:43575

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
17526:17540	attL	NA	NA	NA	NA
AVL69850.1\|20046_21246_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AVL69851.1\|21255_21444_-	hypothetical protein	NA	NA	NA	NA
AVL69949.1\|21624_22449_-	aminoglycoside N-acetyltransferase AAC(3)-VIa	NA	NA	NA	NA
AVL69852.1\|22690_23482_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AVL69853.1\|23574_24048_-	trimethoprim-resistant dihydrofolate reductase DfrA1	G3MBI7	Bacillus_virus	3.7e-19	32.1
AVL69854.1\|24204_25218_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AVL69855.1\|25156_25771_+	DUF3330 domain-containing protein	NA	NA	NA	NA
AVL69856.1\|25896_26457_+	DNA resolvase	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AVL69857.1\|26459_29426_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
AVL69950.1\|29434_29851_+	hypothetical protein	NA	NA	NA	NA
AVL69858.1\|29985_30219_+	hypothetical protein	NA	NA	NA	NA
AVL69859.1\|30327_30594_-	hypothetical protein	NA	NA	NA	NA
AVL69951.1\|30593_31088_-	hypothetical protein	NA	NA	NA	NA
AVL69860.1\|31143_31746_-	proQ/FINO family protein	NA	NA	NA	NA
AVL69861.1\|32099_33446_+	hypothetical protein	NA	NA	NA	NA
AVL69862.1\|33724_35605_+	colicin	NA	NA	NA	NA
AVL69863.1\|35622_35970_-	colicin transporter	NA	NA	NA	NA
AVL69864.1\|36088_36436_+	hypothetical protein	NA	NA	NA	NA
AVL69865.1\|36453_37044_-	hypothetical protein	NA	NA	NA	NA
AVL69866.1\|37040_37301_-	hypothetical protein	NA	NA	NA	NA
AVL69867.1\|37869_38283_+	hypothetical protein	NA	NA	NA	NA
AVL69868.1\|38284_39070_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.0e-55	96.5
AVL69869.1\|39323_39527_+	hypothetical protein	NA	NA	NA	NA
AVL69870.1\|39653_40286_+	hypothetical protein	A0A0K1LMB9	Rhodobacter_phage	1.4e-29	39.1
AVL69952.1\|40456_40660_+	hypothetical protein	NA	NA	NA	NA
AVL69871.1\|40898_41873_+	StbA family protein	A0A222YXF2	Escherichia_phage	3.1e-73	45.1
AVL69872.1\|41876_42269_+	plasmid stability protein	NA	NA	NA	NA
AVL69873.1\|42352_42547_-	hypothetical protein	NA	NA	NA	NA
AVL69874.1\|42545_43890_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.5e-75	51.3
43561:43575	attR	NA	NA	NA	NA
AVL69875.1\|43938_44586_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.1e-21	46.0
AVL69876.1\|44585_44933_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AVL69877.1\|44952_46524_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP027414

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

465587 : 512631

Burkholderia_phage(40.91%)

tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL65568.1\|465587_466586_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AVL65569.1\|466673_467984_-	conjugal transfer protein	NA	NA	NA	NA
AVL65570.1\|468230_468746_+	transcriptional regulator Zur	NA	NA	NA	NA
AVL65571.1\|468844_469054_-	CsbD family protein	NA	NA	NA	NA
AVL69641.1\|469075_469189_-	hypothetical protein	NA	NA	NA	NA
AVL65572.1\|469185_470511_-	MATE family efflux transporter	NA	NA	NA	NA
AVL65573.1\|470689_471298_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AVL65574.1\|471406_471775_-	diacylglycerol kinase	NA	NA	NA	NA
AVL65575.1\|471945_474366_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
AVL65576.1\|474464_475337_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AVL65577.1\|475350_475848_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AVL65578.1\|476028_476946_-	maltose operon protein MalM	NA	NA	NA	NA
AVL65579.1\|477109_478468_-	maltoporin	NA	NA	NA	NA
AVL65580.1\|478556_479666_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AVL65581.1\|480027_481218_+	maltose-binding periplasmic protein	NA	NA	NA	NA
AVL65582.1\|481349_482894_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AVL65583.1\|482908_483799_+	maltose ABC transporter permease	NA	NA	NA	NA
AVL65584.1\|483964_484375_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AVL65585.1\|484517_486614_-	YjbH domain-containing protein	NA	NA	NA	NA
AVL65586.1\|486613_487351_-	hypothetical protein	NA	NA	NA	NA
AVL65587.1\|487347_487986_-	YjbF family lipoprotein	NA	NA	NA	NA
AVL65588.1\|488049_488292_-	outer membrane protein	NA	NA	NA	NA
AVL65589.1\|488735_490385_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AVL65590.1\|490729_492079_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AVL65591.1\|492211_492559_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AVL65592.1\|493134_493422_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
AVL65593.1\|493424_494030_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.2e-59	59.4
AVL65594.1\|494042_494357_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AVL65595.1\|494516_494972_+	hypothetical protein	NA	NA	NA	NA
AVL65596.1\|494968_495166_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AVL65597.1\|495155_496583_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AVL65598.1\|496582_497107_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AVL65599.1\|497158_497476_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AVL65600.1\|497435_497564_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AVL65601.1\|497660_500015_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	6.9e-66	30.6
AVL65602.1\|500014_500968_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AVL65603.1\|500967_501177_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AVL65604.1\|501164_502208_+	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AVL65605.1\|502217_502940_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
AVL65606.1\|503267_503630_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AVL65607.1\|503626_504556_+	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
AVL65608.1\|504555_506103_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AVL65609.1\|506266_506626_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AVL65610.1\|506616_507732_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
AVL65611.1\|507724_508357_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
AVL65612.1\|508359_510105_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
AVL65613.1\|510109_510715_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AVL65614.1\|510711_511167_+	hypothetical protein	NA	NA	NA	NA
AVL65615.1\|511415_511706_+	hypothetical protein	NA	NA	NA	NA
AVL65616.1\|511902_512631_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

DBSCAN-SWA_2

2101600 : 2180190

Salmonella_phage(34.43%)

lysis,holin,tail,transposase,tRNA,terminase,capsid,protease,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL67043.1\|2101600_2102638_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AVL67044.1\|2102753_2103443_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AVL67045.1\|2103761_2104145_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AVL67046.1\|2104206_2104794_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
AVL69712.1\|2104896_2105796_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVL67047.1\|2105813_2107148_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AVL67048.1\|2107278_2108016_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
AVL67049.1\|2108000_2109623_-	L-aspartate oxidase	NA	NA	NA	NA
AVL67050.1\|2109707_2109887_+	hypothetical protein	NA	NA	NA	NA
AVL67051.1\|2110047_2110623_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AVL67052.1\|2110654_2111305_+	anti-sigma-E factor RseA	NA	NA	NA	NA
AVL67053.1\|2111304_2112261_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AVL67054.1\|2112257_2112737_+	SoxR reducing system protein RseC	NA	NA	NA	NA
AVL67055.1\|2112766_2112883_+	transcriptional regulator	NA	NA	NA	NA
AVL67056.1\|2113232_2114577_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.5e-75	51.3
AVL67057.1\|2114658_2115888_+	DUF4102 domain-containing protein	H6WRW7	Salmonella_phage	5.4e-232	93.6
AVL67058.1\|2115865_2116150_-	excisionase Xis	H6WRW8	Salmonella_phage	1.7e-43	88.3
AVL67059.1\|2116190_2116430_-	DUF4060 domain-containing protein	H6WRW9	Salmonella_phage	1.8e-35	96.2
AVL69713.1\|2116472_2117630_-	enterohemolysin	S4TTE8	Salmonella_phage	1.2e-212	97.9
AVL67060.1\|2117592_2120793_-	DNA breaking-rejoining protein	H6WRX1	Salmonella_phage	0.0e+00	68.7
AVL67061.1\|2121503_2121710_+	hypothetical protein	K7P7I0	Enterobacteria_phage	7.4e-17	67.6
AVL67062.1\|2121817_2122903_-	ParA family protein	H2BD62	Pseudomonas_phage	1.5e-60	38.0
AVL67063.1\|2123054_2123522_-	transcriptional regulator	K7PHG0	Enterobacteria_phage	3.2e-68	86.9
AVL67064.1\|2123535_2123763_+	Rha family transcriptional regulator	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
AVL67065.1\|2123728_2124103_+	hypothetical protein	S4TTD7	Salmonella_phage	2.8e-62	97.6
AVL67066.1\|2124194_2125100_+	Replication protein O	A0A0M5M7Y1	Salmonella_phage	4.4e-170	96.3
AVL67067.1\|2125096_2125789_+	phage replication protein	G8C7U6	Escherichia_phage	1.8e-78	60.2
AVL67068.1\|2125803_2126469_+	hypothetical protein	A0A1V0E5L5	Salmonella_phage	2.8e-25	44.9
AVL67069.1\|2126470_2126941_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.1e-68	80.1
AVL67070.1\|2126943_2127597_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	6.3e-62	52.0
AVL67071.1\|2127589_2127871_+	ASCH domain-containing protein	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	3.2e-47	95.7
AVL67072.1\|2127982_2128174_+	hypothetical protein	G8C7S2	Escherichia_phage	1.1e-17	68.9
AVL67073.1\|2128432_2128666_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
AVL67074.1\|2128782_2129031_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
AVL67075.1\|2129065_2129668_+	hypothetical protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AVL67076.1\|2129667_2129874_+	hypothetical protein	S4TNP0	Salmonella_phage	6.0e-35	97.1
AVL67077.1\|2129876_2130488_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
AVL67078.1\|2130484_2130625_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
AVL67079.1\|2130621_2131299_+	antiterminator	I6PDF8	Cronobacter_phage	7.7e-63	54.0
AVL67080.1\|2131295_2131481_+	hypothetical protein	NA	NA	NA	NA
AVL67081.1\|2132640_2132829_+	hypothetical protein	NA	NA	NA	NA
AVL67082.1\|2133043_2133730_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
AVL69714.1\|2134005_2134335_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AVL67083.1\|2134318_2134771_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
AVL69715.1\|2134788_2135241_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
AVL67084.1\|2135476_2135878_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
AVL67085.1\|2135912_2136107_+	hypothetical protein	NA	NA	NA	NA
AVL67086.1\|2136164_2136710_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AVL67087.1\|2136681_2138613_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
AVL67088.1\|2138596_2138800_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
AVL67089.1\|2138796_2140377_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
AVL67090.1\|2140366_2141863_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
AVL67091.1\|2141875_2142223_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AVL67092.1\|2142277_2143306_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AVL67093.1\|2143363_2143723_+	DNA packaging protein	NA	NA	NA	NA
AVL67094.1\|2143733_2144117_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
AVL67095.1\|2144144_2144723_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
AVL67096.1\|2144771_2146022_-\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	7.8e-218	100.0
AVL67097.1\|2146010_2146412_+\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AVL67098.1\|2146419_2147166_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AVL67099.1\|2147216_2147612_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AVL67100.1\|2147608_2147947_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AVL67101.1\|2147918_2151014_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
AVL67102.1\|2151016_2151346_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
AVL67103.1\|2151355_2152054_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
AVL67104.1\|2152060_2152798_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
AVL67105.1\|2152695_2153343_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
AVL67106.1\|2153404_2156767_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
AVL67107.1\|2156805_2157048_+	hypothetical protein	NA	NA	NA	NA
AVL67108.1\|2157101_2159474_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
AVL67109.1\|2159470_2160295_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
AVL67110.1\|2160284_2160863_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
AVL67111.1\|2160959_2161187_-	phage virulence factor	NA	NA	NA	NA
AVL67112.1\|2161293_2161506_+	hypothetical protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
AVL69716.1\|2161568_2161634_+	hypothetical protein	NA	NA	NA	NA
AVL67113.1\|2162298_2162844_-\|transposase	transposase	NA	NA	NA	NA
AVL67114.1\|2163090_2163228_-	hypothetical protein	NA	NA	NA	NA
AVL67115.1\|2163712_2165206_-	type III secretion system protein	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
AVL67116.1\|2165610_2167410_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
AVL67117.1\|2167426_2168401_+	S26 family signal peptidase	NA	NA	NA	NA
AVL67118.1\|2168674_2169355_+	ribonuclease 3	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
AVL67119.1\|2169351_2170257_+	GTPase Era	NA	NA	NA	NA
AVL67120.1\|2170268_2170997_+	DNA repair protein RecO	NA	NA	NA	NA
AVL67121.1\|2171008_2171740_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AVL67122.1\|2171739_2172120_+	holo-ACP synthase	NA	NA	NA	NA
AVL67123.1\|2172231_2172492_-	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
AVL67124.1\|2172529_2173456_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
AVL67125.1\|2173571_2174768_+	MFS transporter	NA	NA	NA	NA
AVL67126.1\|2174789_2175707_+	oxidoreductase	NA	NA	NA	NA
AVL67127.1\|2175745_2176594_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AVL67128.1\|2176709_2177603_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
AVL67129.1\|2177613_2178975_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AVL67130.1\|2178978_2179614_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
AVL67131.1\|2179638_2180190_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA

DBSCAN-SWA_3

2550928 : 2563219

Salmonella_phage(45.45%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL67454.1\|2550928_2553295_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
AVL69729.1\|2553623_2554613_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.4e-190	97.3
AVL67455.1\|2554627_2554996_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
AVL67456.1\|2555024_2556356_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
AVL67457.1\|2556652_2556982_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
AVL67458.1\|2557574_2558816_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
AVL67459.1\|2558818_2559346_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
AVL67460.1\|2559723_2560167_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
AVL67461.1\|2560220_2562050_-	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
AVL67462.1\|2562397_2562688_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
AVL67463.1\|2562715_2563219_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_4

2635270 : 2644441

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL67533.1\|2635270_2636218_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AVL67534.1\|2636201_2636933_+	ABC transporter permease	NA	NA	NA	NA
AVL67535.1\|2636913_2637021_-	hypothetical protein	NA	NA	NA	NA
AVL67536.1\|2637080_2637812_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AVL67537.1\|2638034_2639720_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AVL67538.1\|2639716_2640436_+	DNA-binding response regulator	NA	NA	NA	NA
AVL67539.1\|2640482_2640950_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AVL67540.1\|2641006_2641537_-	hypothetical protein	NA	NA	NA	NA
AVL67541.1\|2641708_2642167_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AVL67542.1\|2642407_2644441_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_5

2712749 : 2723255

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL67597.1\|2712749_2714153_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
AVL67598.1\|2714330_2715224_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AVL67599.1\|2715600_2716686_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AVL67600.1\|2716685_2717585_+	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
AVL67601.1\|2717632_2718511_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	9.3e-109	65.5
AVL67602.1\|2718511_2719063_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
AVL67603.1\|2719068_2720061_+	protein RfbI	NA	NA	NA	NA
AVL67604.1\|2720057_2720831_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AVL67605.1\|2720835_2721915_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
AVL67606.1\|2721941_2723255_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_6

2809249 : 2859999

Salmonella_phage(89.06%)

lysis,holin,plate,tail,terminase,capsid,integrase,head,protease,portal

attL 2803827:2803841|attR 2820303:2820317

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2803827:2803841	attL	NA	NA	NA	NA
AVL67689.1\|2809249_2809723_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
AVL67690.1\|2810370_2810661_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
AVL67691.1\|2811032_2811830_-	protein MtfA	NA	NA	NA	NA
AVL67692.1\|2812121_2813111_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AVL67693.1\|2813112_2813355_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
AVL67694.1\|2813379_2813949_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
AVL67695.1\|2813952_2814786_-	hypothetical protein	Q8HAA7	Salmonella_phage	4.7e-163	100.0
AVL67696.1\|2814782_2815400_-	hypothetical protein	Q8HAA6	Salmonella_phage	2.6e-113	100.0
AVL67697.1\|2815396_2815912_-	DUF262 domain-containing protein	Q8HAA5	Salmonella_phage	7.4e-98	100.0
AVL67698.1\|2815908_2816139_-	hypothetical protein	Q8HAA4	Salmonella_phage	2.0e-34	100.0
AVL67699.1\|2816209_2816749_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AVL67700.1\|2816885_2817713_-	DUF2303 domain-containing protein	Q8HAA2	Salmonella_phage	7.5e-153	100.0
AVL67701.1\|2817770_2818142_-	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
AVL67702.1\|2818239_2818425_+	hypothetical protein	NA	NA	NA	NA
AVL67703.1\|2818956_2819652_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
AVL67704.1\|2819625_2819811_+	amino acid permease	NA	NA	NA	NA
AVL67705.1\|2819749_2819974_+	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AVL67706.1\|2820002_2820557_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
2820303:2820317	attR	NA	NA	NA	NA
AVL67707.1\|2820553_2821711_+	peptidase	Q8HA97	Salmonella_phage	4.2e-218	100.0
AVL67708.1\|2821707_2821932_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AVL67709.1\|2821928_2822747_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
AVL67710.1\|2822706_2823231_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	2.4e-96	100.0
AVL67711.1\|2823230_2824124_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
AVL67712.1\|2824120_2824510_+	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
AVL67713.1\|2824526_2825387_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.9e-163	100.0
AVL69737.1\|2825394_2826384_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	9.2e-190	97.6
AVL67714.1\|2826394_2827018_+	hypothetical protein	Q8HA89	Salmonella_phage	9.1e-119	100.0
AVL69738.1\|2827150_2827408_+	hypothetical protein	Q8HA88	Salmonella_phage	5.2e-44	100.0
AVL67715.1\|2827337_2827772_-	hypothetical protein	NA	NA	NA	NA
AVL67716.1\|2827933_2828278_+\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	5.3e-44	100.0
AVL67717.1\|2828280_2828895_+	endolysin	Q8HA86	Salmonella_phage	9.3e-116	100.0
AVL67718.1\|2828891_2829377_+\|lysis	lysis protein	Q8HA85	Salmonella_phage	5.9e-81	100.0
AVL67719.1\|2829589_2830009_+	KilA-N domain-containing protein	Q8HA84	Salmonella_phage	4.8e-71	100.0
AVL67720.1\|2830228_2830531_+	hypothetical protein	Q8HA83	Salmonella_phage	3.6e-52	100.0
AVL67721.1\|2830591_2830942_+	HNH endonuclease	Q8HA82	Salmonella_phage	2.5e-65	100.0
AVL67722.1\|2831058_2831562_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	3.6e-89	100.0
AVL67723.1\|2831558_2833292_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	100.0
AVL67724.1\|2833303_2833486_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
AVL67725.1\|2833485_2834727_+\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.0e-242	99.8
AVL67726.1\|2834668_2835355_+\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	6.5e-126	100.0
AVL67727.1\|2835369_2836575_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.6e-223	100.0
AVL67728.1\|2836625_2836826_+	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
AVL67729.1\|2836828_2837152_+\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
AVL67730.1\|2837148_2837553_+\|head,tail	head-tail adaptor protein	Q8HAC9	Salmonella_phage	1.4e-72	100.0
AVL67731.1\|2837524_2838037_+	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
AVL67732.1\|2838033_2838594_+	hypothetical protein	Q8HAC7	Salmonella_phage	3.0e-105	100.0
AVL67733.1\|2838597_2838762_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
AVL67734.1\|2838751_2840248_+\|tail	phage tail protein	Q8HAC5	Salmonella_phage	2.7e-278	100.0
AVL67735.1\|2840247_2840604_+\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
AVL67736.1\|2840600_2840927_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
AVL67737.1\|2841011_2842940_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.8
AVL67738.1\|2842973_2844314_+	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.7e-251	99.6
AVL67739.1\|2844310_2845369_+\|plate	baseplate protein	Q8HAC0	Salmonella_phage	1.3e-202	100.0
AVL67740.1\|2845368_2845902_+\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	1.4e-96	100.0
AVL67741.1\|2845906_2846320_+	hypothetical protein	Q8HAB8	Salmonella_phage	1.1e-75	100.0
AVL67742.1\|2846291_2846837_+\|head	head assembly protein	Q8HAB7	Salmonella_phage	9.2e-99	100.0
AVL67743.1\|2846871_2847393_+\|tail	phage tail protein	Q8HAB6	Salmonella_phage	2.9e-94	100.0
AVL67744.1\|2847395_2847983_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.4e-113	99.5
AVL67745.1\|2847969_2849532_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	2.6e-287	100.0
AVL67746.1\|2849531_2850101_+\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	7.3e-107	100.0
AVL67747.1\|2850385_2851393_-	non-LEE encoded effector protein NleB	Q8HAB2	Salmonella_phage	7.9e-197	100.0
AVL67748.1\|2851605_2851827_+	DNA-binding protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
AVL67749.1\|2851940_2852156_-	hypothetical protein	NA	NA	NA	NA
AVL67750.1\|2852237_2852480_+	hypothetical protein	NA	NA	NA	NA
AVL67751.1\|2852457_2852619_+	hypothetical protein	NA	NA	NA	NA
AVL67752.1\|2852745_2853165_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AVL67753.1\|2853167_2854436_+	protein UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
AVL67754.1\|2854890_2855103_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AVL69739.1\|2855113_2855302_+	cold-shock protein	NA	NA	NA	NA
AVL67755.1\|2855562_2856759_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
AVL67756.1\|2857408_2857708_+	hypothetical protein	NA	NA	NA	NA
AVL67757.1\|2857799_2858495_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AVL67758.1\|2858568_2859999_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

2964043 : 2994269

Escherichia_phage(18.18%)

protease,integrase,tail

attL 2967905:2967919|attR 2986392:2986406

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL67870.1\|2964043_2964274_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AVL67871.1\|2964411_2964786_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AVL67872.1\|2964786_2965662_+	hypothetical protein	NA	NA	NA	NA
AVL67873.1\|2965678_2966032_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AVL69742.1\|2966089_2966209_+	hypothetical protein	NA	NA	NA	NA
AVL69741.1\|2966405_2967260_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
AVL69743.1\|2967319_2967814_-	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
2967905:2967919	attL	NA	NA	NA	NA
AVL67874.1\|2968003_2968234_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
AVL67875.1\|2968287_2968821_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
AVL67876.1\|2969077_2969245_-	lytic enzyme	NA	NA	NA	NA
AVL67877.1\|2969309_2969498_-	hypothetical protein	NA	NA	NA	NA
AVL67878.1\|2969970_2970852_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
AVL67879.1\|2970948_2971149_-	phage virulence factor	NA	NA	NA	NA
AVL67880.1\|2971339_2971456_-\|tail	phage tail protein	NA	NA	NA	NA
AVL67881.1\|2971718_2971844_+	arsenic transporter	NA	NA	NA	NA
AVL67882.1\|2971972_2972239_+	hypothetical protein	NA	NA	NA	NA
AVL67883.1\|2972991_2973606_-	disulfide bond formation protein B	NA	NA	NA	NA
AVL67884.1\|2973615_2973774_-	hypothetical protein	NA	NA	NA	NA
AVL67885.1\|2973906_2974821_-	protein PagO	NA	NA	NA	NA
AVL69744.1\|2975438_2975639_+	hypothetical protein	NA	NA	NA	NA
AVL67886.1\|2975929_2976187_+	hypothetical protein	NA	NA	NA	NA
AVL67887.1\|2976124_2976493_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
AVL67888.1\|2977956_2978097_-	hypothetical protein	NA	NA	NA	NA
AVL67889.1\|2978262_2978532_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
AVL67890.1\|2978578_2978773_+	hypothetical protein	NA	NA	NA	NA
AVL67891.1\|2978901_2979321_+	N-acetyltransferase	NA	NA	NA	NA
AVL67892.1\|2979708_2980185_-	hypothetical protein	NA	NA	NA	NA
AVL67893.1\|2980514_2980910_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.2e-16	32.8
AVL67894.1\|2981593_2982316_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AVL67895.1\|2982600_2982765_+	hypothetical protein	NA	NA	NA	NA
AVL67896.1\|2982988_2983639_+	serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
AVL67897.1\|2983657_2983849_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AVL67898.1\|2983959_2984199_-	DUF1480 domain-containing protein	NA	NA	NA	NA
AVL69745.1\|2984313_2985753_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AVL67899.1\|2985830_2988470_-	MCE family protein	NA	NA	NA	NA
2986392:2986406	attR	NA	NA	NA	NA
AVL67900.1\|2988432_2989716_-	paraquat-inducible protein A	NA	NA	NA	NA
AVL67901.1\|2989757_2990342_+	GAF domain-containing protein	NA	NA	NA	NA
AVL67902.1\|2990439_2991126_+	RNA chaperone ProQ	NA	NA	NA	NA
AVL67903.1\|2991145_2993194_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AVL67904.1\|2993387_2994269_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_8

3760060 : 3846220

Salmonella_phage(44.64%)

lysis,holin,tail,transposase,terminase,tRNA,protease,integrase,portal

attL 3784154:3784173|attR 3857366:3857385

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL68663.1\|3760060_3760741_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
AVL68664.1\|3761086_3761296_-	hypothetical protein	NA	NA	NA	NA
AVL68665.1\|3761361_3762021_+	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
AVL68666.1\|3762107_3762437_+	sulfurtransferase TusE	NA	NA	NA	NA
AVL68667.1\|3762433_3762715_-	acylphosphatase	NA	NA	NA	NA
AVL68668.1\|3762763_3763543_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVL68669.1\|3763568_3764117_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AVL68670.1\|3764331_3765543_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AVL68671.1\|3765600_3765918_+	heat-shock protein HspQ	NA	NA	NA	NA
AVL68672.1\|3765962_3766379_-	CoA-binding protein	NA	NA	NA	NA
AVL68673.1\|3766549_3767212_+	DUF2057 domain-containing protein	NA	NA	NA	NA
AVL68674.1\|3767306_3767765_+	methylglyoxal synthase	NA	NA	NA	NA
AVL68675.1\|3767800_3769855_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AVL68676.1\|3769978_3770425_+	YccF domain-containing protein	NA	NA	NA	NA
AVL68677.1\|3770443_3772597_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AVL68678.1\|3772583_3773189_-	DNA transformation protein	NA	NA	NA	NA
AVL68679.1\|3773405_3773915_+	cell division inhibitor SulA	NA	NA	NA	NA
AVL68680.1\|3774271_3775324_+	outer membrane protein A	NA	NA	NA	NA
AVL68681.1\|3775395_3775848_-	macrodomain Ter protein	NA	NA	NA	NA
AVL68682.1\|3776033_3777794_+\|protease	Lon protease family protein	NA	NA	NA	NA
AVL68683.1\|3777862_3778381_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AVL68684.1\|3778480_3778648_-	ribosome modulation factor	NA	NA	NA	NA
AVL68685.1\|3778903_3779467_-	hypothetical protein	NA	NA	NA	NA
AVL68686.1\|3779463_3781104_-	intermembrane transport protein PqiB	NA	NA	NA	NA
AVL68687.1\|3781108_3782362_-	paraquat-inducible protein A	NA	NA	NA	NA
AVL68688.1\|3782376_3784284_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
3784154:3784173	attL	NA	NA	NA	NA
AVL68689.1\|3784296_3786405_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AVL68690.1\|3786503_3787613_+	MOSC domain-containing protein	NA	NA	NA	NA
AVL68691.1\|3787609_3788152_-	cell division protein ZapC	NA	NA	NA	NA
AVL68692.1\|3788317_3789328_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AVL68693.1\|3789535_3792148_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
AVL68694.1\|3792574_3792766_+	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AVL68695.1\|3793036_3793723_+	virulence protein	NA	NA	NA	NA
AVL68696.1\|3793707_3794007_+	hypothetical protein	NA	NA	NA	NA
AVL68697.1\|3794075_3794702_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AVL68698.1\|3795335_3796680_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.5e-75	51.3
AVL68699.1\|3796773_3797742_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.1e-195	100.0
AVL68700.1\|3798217_3798799_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AVL68701.1\|3798798_3801237_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
AVL68702.1\|3801290_3801533_-	hypothetical protein	NA	NA	NA	NA
AVL68703.1\|3801571_3804922_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
AVL68704.1\|3804993_3805698_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
AVL68705.1\|3805595_3806333_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
AVL68706.1\|3806342_3807038_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
AVL68707.1\|3807127_3807661_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AVL68708.1\|3807777_3808275_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
AVL68709.1\|3808373_3808706_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
AVL69782.1\|3808702_3811690_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
AVL68710.1\|3811769_3812099_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
AVL68711.1\|3812095_3812494_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
AVL68712.1\|3812539_3813289_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
AVL68713.1\|3813300_3813702_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
AVL68714.1\|3813698_3814265_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
AVL68715.1\|3814245_3814545_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
AVL68716.1\|3814537_3814861_-	recombinase RecA	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
AVL69784.1\|3814951_3817033_-	peptidase S14	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
AVL69783.1\|3816956_3818474_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
AVL68717.1\|3818500_3818707_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
AVL68718.1\|3818703_3820842_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
AVL68719.1\|3820798_3821332_-	DNA breaking-rejoining protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
AVL69786.1\|3821539_3822019_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
AVL68720.1\|3822036_3822489_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AVL69785.1\|3822472_3822802_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AVL68721.1\|3823077_3823764_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
AVL68722.1\|3824124_3824574_+	hypothetical protein	NA	NA	NA	NA
AVL68723.1\|3824709_3824835_-	hypothetical protein	NA	NA	NA	NA
AVL68724.1\|3825008_3825326_-	hypothetical protein	NA	NA	NA	NA
AVL68725.1\|3825392_3826190_-	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
AVL68726.1\|3826179_3826326_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
AVL68727.1\|3826322_3826934_-	protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
AVL68728.1\|3826936_3827143_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AVL68729.1\|3827142_3827745_-	hypothetical protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
AVL68730.1\|3827827_3828049_-	hypothetical protein	NA	NA	NA	NA
AVL68731.1\|3828160_3828394_-	DinI family protein	H6WRY5	Salmonella_phage	1.4e-35	97.4
AVL68732.1\|3828685_3828976_-	hypothetical protein	NA	NA	NA	NA
AVL68733.1\|3829053_3829365_-	hypothetical protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
AVL68734.1\|3829361_3829709_-	DNA-binding protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
AVL68735.1\|3829719_3830469_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	1.1e-137	99.2
AVL68736.1\|3830471_3831455_-	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
AVL68737.1\|3831539_3831914_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AVL68738.1\|3831879_3832119_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
AVL68739.1\|3832238_3832649_+	transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
AVL68740.1\|3832698_3832959_+	hypothetical protein	NA	NA	NA	NA
AVL68741.1\|3832951_3833110_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
AVL68742.1\|3833131_3833431_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
AVL68743.1\|3833557_3836443_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	97.3
AVL68744.1\|3836405_3837563_+	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AVL68745.1\|3837605_3837845_+	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AVL68746.1\|3837885_3838134_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AVL68747.1\|3838178_3839471_+\|integrase	integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
AVL68748.1\|3839665_3840868_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AVL68749.1\|3840945_3842382_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AVL68750.1\|3842626_3843841_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA
AVL68751.1\|3843927_3844161_+	hypothetical protein	NA	NA	NA	NA
AVL68752.1\|3844157_3844619_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AVL68753.1\|3844819_3846220_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
3857366:3857385	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3910386 : 3919118

Enterobacteria_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL68801.1\|3910386_3911641_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
AVL68802.1\|3912104_3912563_-\|transposase	IS200/IS605 family transposase IS200F	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
AVL68803.1\|3912519_3912702_-	hypothetical protein	NA	NA	NA	NA
AVL68804.1\|3912754_3915031_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AVL68805.1\|3915061_3915382_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AVL68806.1\|3915705_3915927_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AVL68807.1\|3915881_3916076_-	hypothetical protein	NA	NA	NA	NA
AVL68808.1\|3916056_3918003_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
AVL68809.1\|3917999_3919118_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP027413

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57055 : 66351

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL65120.1\|57055_57736_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4
AVL65121.1\|57880_58069_-	hypothetical protein	NA	NA	NA	NA
AVL65122.1\|58117_58474_-	hypothetical protein	NA	NA	NA	NA
AVL65123.1\|58466_58937_-	hypothetical protein	NA	NA	NA	NA
AVL65124.1\|59447_59870_+	protein SamA	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
AVL65125.1\|59869_61144_+	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.0e-156	64.5
AVL65126.1\|61225_62203_-	chromosome partitioning protein ParB	A0A1B0V750	Salmonella_phage	5.2e-84	53.2
AVL65127.1\|62199_63405_-	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
AVL65128.1\|63819_64761_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
AVL65129.1\|64792_65359_-	DUF2913 domain-containing protein	NA	NA	NA	NA
AVL65130.1\|65415_65751_-	hypothetical protein	NA	NA	NA	NA
AVL65163.1\|65934_66351_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027415

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP027414

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP027413

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection