CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP027257	Escherichia coli strain EC11 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
CP027258	Escherichia coli strain EC11 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
CP027256	Escherichia coli strain EC11 plasmid unnamed1, complete sequence	0 crisprs	DEDDh	0	0
CP027259	Escherichia coli strain EC11 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0
CP027255	Escherichia coli strain EC11 chromosome, complete genome	3 crisprs	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,c2c9_V-U4,DinG	19	11

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027255_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027255_1

630477-630705

TypeI-E

I-E

Consensus_repeat	Method
CCGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GCCGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
GCCGGTTTATCCCCGCTGGCGCGGGGAACACACTAAGCATACAGAAC	PILER-CR

3 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP027255_1

>merge|CP027255|1|630477-630705|CRT,CRISPRCasFinder,PILER-CR
TGGGAGTTCTACCGCAGGGGCGGGGAATTCTAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTTACTCGCCGGGGAATACGCCCCGCGCCACGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTTACTCATTCAGAACGCTGCATGAAATATGCCGGTTTATCCCCGCTGGCGCGGGGAACACACTAAGCATACATAAC

>CP027255|1|1|630477-630689|CRT
TGGGAGTTCTACCGCAGGGGCGGGGAATTC	TAAGTGATATCCATCATCGCATCCAGTGCGC
CCGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACTCGCCGGGGAATACGCCCCGCGCCACG
CCGGTTTATCCCCGCTGGCGCGGGGAACAC	CTTACTCATTCAGAACGCTGCATGAAATATG
CCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027255|1|1|630537-630689|CRISPRCasFinder
CCCGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACTCGCCGGGGAATACGCCCCGCGCCAC
GCCGGTTTATCCCCGCTGGCGCGGGGAACAC	CTTACTCATTCAGAACGCTGCATGAAATAT
GCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027255|1|1|630538-630705|PILER-CR
CCGGTTTATCCCCGCTGGCGCGGGGAACACTTACTCGCCGGGGAATACG	CCCCGCGCCACGCCGGTTTATCCCCGCTGG
CGCGGGGAACACCTTACTCATTCAGAACGCTGCATGAAATATGCCGGTT	TATCCCCGCTGG
CGCGGGGAACACACTAAGCATACATAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP027255.1\|AVL07656.1\|626830_628258_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP027255.1\|AVL07655.1\|626225_626831_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP027255.1\|AVL07667.1\|639540_639693_-\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|366840
CP027255.1\|AVL07657.1\|628259_629168_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP027255.1\|AVL07659.1\|630785_631079_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP027255.1\|AVL07654.1\|625852_626176_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP027255.1\|AVL07652.1\|624618_625329_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP027255.1\|AVL07661.1\|631995_632646_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP027255.1\|AVL07662.1\|632627_633374_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP027255.1\|AVL07663.1\|633384_634440_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP027255.1\|AVL07658.1\|629419_630457_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP027255.1\|AVL07660.1\|631078_631999_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP027255.1\|AVL07666.1\|636647_639347_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP027255.1\|AVL07650.1\|623093_624143_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP027255.1\|AVL07665.1\|634987_636550_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP027255.1\|AVL07653.1\|625347_625659_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP027255.1\|AVL07649.1\|622351_623113_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP027255.1\|AVL07651.1\|624139_624619_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP027255.1\|AVL07664.1\|634451_634991_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP027255.1\|AVL07668.1\|639957_640692_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
CP027255.1\|AVL07656.1\|626830_628258_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP027255.1\|AVL07655.1\|626225_626831_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP027255.1\|AVL07667.1\|639540_639693_-\|Hok/Gef-family-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP027255.1\|AVL07657.1\|628259_629168_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP027255.1\|AVL07659.1\|630785_631079_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
CP027255.1\|AVL07654.1\|625852_626176_-\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP027255.1\|AVL07652.1\|624618_625329_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
CP027255.1\|AVL07661.1\|631995_632646_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	5.16907e-91
CP027255.1\|AVL07662.1\|632627_633374_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.95914e-49
CP027255.1\|AVL07663.1\|633384_634440_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.10696e-155
CP027255.1\|AVL07658.1\|629419_630457_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP027255.1\|AVL07660.1\|631078_631999_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.70125e-157
CP027255.1\|AVL07666.1\|636647_639347_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.31706e-179
CP027255.1\|AVL07650.1\|623093_624143_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP027255.1\|AVL07665.1\|634987_636550_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP027255.1\|AVL07653.1\|625347_625659_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP027255.1\|AVL07649.1\|622351_623113_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP027255.1\|AVL07651.1\|624139_624619_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
CP027255.1\|AVL07664.1\|634451_634991_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.30002e-26
CP027255.1\|AVL07668.1\|639957_640692_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138

>CP027255.1|AVL07658.1|629419_630457_+|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP027255.1|AVL07657.1|628259_629168_-|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP027255.1|AVL07656.1|626830_628258_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPKNEAAVASSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP027255.1|AVL07655.1|626225_626831_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP027255.1|AVL07654.1|625852_626176_-|hypothetical-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP027255.1|AVL07653.1|625347_625659_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP027255.1|AVL07652.1|624618_625329_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP027255.1|AVL07651.1|624139_624619_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP027255.1|AVL07650.1|623093_624143_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP027255.1|AVL07649.1|622351_623113_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>CP027255.1|AVL07659.1|630785_631079_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP027255.1|AVL07660.1|631078_631999_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>CP027255.1|AVL07661.1|631995_632646_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQARPAESETFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENTRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP027255.1|AVL07662.1|632627_633374_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>CP027255.1|AVL07663.1|633384_634440_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP027255.1|AVL07664.1|634451_634991_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWREELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>CP027255.1|AVL07665.1|634987_636550_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAVWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALQSLEHAFQFGPDSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>CP027255.1|AVL07666.1|636647_639347_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>CP027255.1|AVL07667.1|639540_639693_-|Hok/Gef-family-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP027255.1|AVL07668.1|639957_640692_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: CP027255_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027255_2

646191-647561

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

22 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of CP027255_2

>merge|CP027255|2|646191-647561|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCTTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTGCCGCTGTCAGCATTGCTGGCGCGTAATACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTCCTCGCATTATTTCCCTTTCTTCTTCGACGGTTTATCCCCGCTGGCGCGGGGAACACTCCGCATCGCTCATGCCGATAATCGGGCTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACAGCACCACTGAAAATCTGTACGAAAGCAATAGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCTGTAATGCTCAAAGATATAGCCGGATCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCAAAACAAACATCGGGGTACGCGTGGTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTTACTACAATAGGTGGACACGCTACGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACAAATATGGGGAGCGCCGTTAATGAAATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACCTCACCGCTTTTGACGCCAGGGAAATCGGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCGCCTTAATTCTGAGCAGGCTATCGGAGTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCAGAGCGGATGAAAAAGCAGTAAATAACGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTGTTCCGTTAATATCGATGGCGACGTAACTCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTCTGAGGCTGTTTATGAGGATAAAAAATTCGGTTTATCCCCGCTGGCGCGGGGAACACCGCCGCGGACTCACGAGCAGGCCATCACAGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCGTTCATATTCGTTTCCTCGTGGCGCGATCTAGGTTTATCCCCGCTGGCGCGGGGAACACAATTGAGACGTTCCACGCAATTAAACAAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTTATTCGCACTCTGCCAGTTATCCGGGTTACGGTTTATCCCCGCTGGCGCGGGGAACACGCTGACCTGTCGAATCCGTATAGCCGCCGTTCCGGTTTATCCCCGCTGGCGCGGGGAACACGTCGTGTGAAGGGGTTAACGCGCTGACTGAGTCGGTTTATCCCCGCTGGCGCGGGGAACACCTCACCAGTTTTGGGGTCAATAACCGGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACACGATAACGTTTAACGTTGGCGTGAGCGGGGAGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027255|2|2|646191-647561|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCCTCGCATTATTTCCCTTTCTTCTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGCATCGCTCATGCCGATAATCGGGCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACCACTGAAAATCTGTACGAAAGCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCTGTAATGCTCAAAGATATAGCCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCAAAACAAACATCGGGGTACGCGTGGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATATGGGGAGCGCCGTTAATGAAATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCGCTTTTGACGCCAGGGAAATCGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCGCCTTAATTCTGAGCAGGCTATCGGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCAGAGCGGATGAAAAAGCAGTAAATAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGTTCCGTTAATATCGATGGCGACGTAACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTCTGAGGCTGTTTATGAGGATAAAAAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTCGCACTCTGCCAGTTATCCGGGTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGACCTGTCGAATCCGTATAGCCGCCGTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGTGTGAAGGGGTTAACGCGCTGACTGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCAGTTTTGGGGTCAATAACCGGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATAACGTTTAACGTTGGCGTGAGCGGGGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027255|2|2|646191-647561|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCCTCGCATTATTTCCCTTTCTTCTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGCATCGCTCATGCCGATAATCGGGCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACCACTGAAAATCTGTACGAAAGCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCTGTAATGCTCAAAGATATAGCCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCAAAACAAACATCGGGGTACGCGTGGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATATGGGGAGCGCCGTTAATGAAATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCGCTTTTGACGCCAGGGAAATCGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCGCCTTAATTCTGAGCAGGCTATCGGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCAGAGCGGATGAAAAAGCAGTAAATAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGTTCCGTTAATATCGATGGCGACGTAACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTCTGAGGCTGTTTATGAGGATAAAAAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTCGCACTCTGCCAGTTATCCGGGTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGACCTGTCGAATCCGTATAGCCGCCGTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGTGTGAAGGGGTTAACGCGCTGACTGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCAGTTTTGGGGTCAATAACCGGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATAACGTTTAACGTTGGCGTGAGCGGGGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027255|2|2|646252-647561|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCCTCGCATTATTTCCCTTTCTTCTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGCATCGCTCATGCCGATAATCGGGCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACCACTGAAAATCTGTACGAAAGCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCTGTAATGCTCAAAGATATAGCCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCAAAACAAACATCGGGGTACGCGTGGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATATGGGGAGCGCCGTTAATGAAATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCGCTTTTGACGCCAGGGAAATCGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCGCCTTAATTCTGAGCAGGCTATCGGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCAGAGCGGATGAAAAAGCAGTAAATAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGTTCCGTTAATATCGATGGCGACGTAACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTCTGAGGCTGTTTATGAGGATAAAAAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTCGCACTCTGCCAGTTATCCGGGTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGACCTGTCGAATCCGTATAGCCGCCGTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGTGTGAAGGGGTTAACGCGCTGACTGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCAGTTTTGGGGTCAATAACCGGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATAACGTTTAACGTTGGCGTGAGCGGGGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP027255.1\|AVL07667.1\|639540_639693_-\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|366840
CP027255.1\|AVL07668.1\|639957_640692_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP027255.1\|AVL07672.1\|644997_645552_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212662
CP027255.1\|AVL07673.1\|647900_648572_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP027255.1\|AVL07669.1\|640765_642478_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP027255.1\|AVL07680.1\|654832_655168_-\|toxin-MazF	unknown	unknown	gnl\|CDD\|182138
CP027255.1\|AVL07678.1\|652105_653743_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP027255.1\|AVL07681.1\|655167_655416_-\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP027255.1\|AVL07666.1\|636647_639347_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP027255.1\|AVL07677.1\|650719_652018_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP027255.1\|AVL07679.1\|653970_654762_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP027255.1\|AVL07663.1\|633384_634440_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP027255.1\|AVL07671.1\|644592_644958_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP027255.1\|AVL07665.1\|634987_636550_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP027255.1\|AVL07670.1\|642477_644277_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP027255.1\|AVL07675.1\|649330_650266_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
CP027255.1\|AVL07664.1\|634451_634991_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP027255.1\|AVL07674.1\|648744_649347_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
CP027255.1\|AVL07682.1\|655493_657728_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP027255.1\|AVL07676.1\|650301_650664_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027255.1\|AVL07667.1\|639540_639693_-\|Hok/Gef-family-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP027255.1\|AVL07668.1\|639957_640692_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
CP027255.1\|AVL07672.1\|644997_645552_+\|carbohydrate-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	5.59935e-35
CP027255.1\|AVL07673.1\|647900_648572_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	9.11521e-156
CP027255.1\|AVL07669.1\|640765_642478_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP027255.1\|AVL07680.1\|654832_655168_-\|toxin-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
CP027255.1\|AVL07678.1\|652105_653743_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP027255.1\|AVL07681.1\|655167_655416_-\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP027255.1\|AVL07666.1\|636647_639347_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.31706e-179
CP027255.1\|AVL07677.1\|650719_652018_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP027255.1\|AVL07663.1\|633384_634440_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.10696e-155
CP027255.1\|AVL07671.1\|644592_644958_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
CP027255.1\|AVL07665.1\|634987_636550_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP027255.1\|AVL07670.1\|642477_644277_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP027255.1\|AVL07675.1\|649330_650266_+\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	4.35408e-81
CP027255.1\|AVL07664.1\|634451_634991_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.30002e-26
CP027255.1\|AVL07674.1\|648744_649347_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.00218e-77
CP027255.1\|AVL07682.1\|655493_657728_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP027255.1\|AVL07679.1\|653970_654762_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160

>CP027255.1|AVL07672.1|644997_645552_+|carbohydrate-kinase
MLGCCVLDIWGMTWKTTATLLLLVPVLQAPLARYAWIYRSILESVALMLKNNYDNMRNEMNHFAKHLIITGGGSNSDLFMQIFADMFNLPARRNAINGCASLGAAINKAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHNDVILKKSYEVMHGELGNVDSIQSWSNA
>CP027255.1|AVL07671.1|644592_644958_+|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>CP027255.1|AVL07670.1|642477_644277_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLTGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGELRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>CP027255.1|AVL07669.1|640765_642478_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>CP027255.1|AVL07668.1|639957_640692_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>CP027255.1|AVL07667.1|639540_639693_-|Hok/Gef-family-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP027255.1|AVL07666.1|636647_639347_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>CP027255.1|AVL07665.1|634987_636550_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAVWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALQSLEHAFQFGPDSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>CP027255.1|AVL07664.1|634451_634991_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWREELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>CP027255.1|AVL07663.1|633384_634440_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP027255.1|AVL07673.1|647900_648572_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGSASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP027255.1|AVL07674.1|648744_649347_+|LemA-family-protein
MLRTFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSNHEKDVLEAVTLARSQANRASSDLQQTPGNEQKLQAWQQAQAQVTRTLGQLTIISERYPELKAQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNASAH
>CP027255.1|AVL07675.1|649330_650266_+|hypothetical-protein
MLVLIRRVNYMKNLILLLVLICSSAFAVQVPVPEFAKYINDLTGTLTREEVSTLTSQIKTLTQKSHAQLIVLVVETTGDETIEQYATRVFERWQPGHKNLDDGILLVVAWQDHTVHIEIGYGLEGILTDAQSGQIIRNSIIPAFKKGDLAVGLQQGIGDIETRLSENDLVNNTSPDHPLPFSGWWALLVWAIVLTFISARGYVKTLGVICFAAIILAFVLPIAGYSGSWGVLATLLCFATPFLVVAIAFTPFGRKVRDSMRSANRPSRYERSNSASRHSSSSSSSSSSSFNNDNFSGGGGSSGGGGASGRW
>CP027255.1|AVL07676.1|650301_650664_+|hypothetical-protein
MSKILANHPRLSKFVFGLFGAAGMIWLNKAFQGDELFQLITSLLALDTFVYFCIYSLINPIPEANDFLWDYKVHQRKYSSNISHNDFVSNVRNSRKIVRILILVGITFINVIALLTKLKM
>CP027255.1|AVL07677.1|650719_652018_-|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP027255.1|AVL07678.1|652105_653743_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP027255.1|AVL07679.1|653970_654762_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP027255.1|AVL07680.1|654832_655168_-|toxin-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP027255.1|AVL07681.1|655167_655416_-|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP027255.1|AVL07682.1|655493_657728_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS

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Crispr_ID: CP027255_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027255_3

4273180-4273303

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027255_3

>merge|CP027255|3|4273180-4273303|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP027255|3|3|4273180-4273303|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP027255.1\|AVL11045.1\|4271009_4272614_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
CP027255.1\|AVL11052.1\|4279946_4280879_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
CP027255.1\|AVL11042.1\|4268731_4269400_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
CP027255.1\|AVL11047.1\|4273617_4274874_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
CP027255.1\|AVL11048.1\|4274914_4276288_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP027255.1\|AVL11038.1\|4264602_4264812_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP027255.1\|AVL11054.1\|4281888_4282113_-\|hypothetical-protein	unknown	unknown	unknown
CP027255.1\|AVL11051.1\|4278622_4279834_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
CP027255.1\|AVL11053.1\|4280875_4281901_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP027255.1\|AVL11050.1\|4277183_4278332_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP027255.1\|AVL11037.1\|4262633_4264046_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
CP027255.1\|AVL11044.1\|4270185_4270998_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP027255.1\|AVL11046.1\|4272739_4273045_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP027255.1\|AVL11039.1\|4265267_4265894_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182135
CP027255.1\|AVL11041.1\|4268020_4268668_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182160
CP027255.1\|AVL11049.1\|4276502_4277144_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP027255.1\|AVL11055.1\|4282199_4282289_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP027255.1\|AVL11043.1\|4269396_4270182_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
CP027255.1\|AVL11040.1\|4265914_4268017_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
CP027255.1\|AVL11056.1\|4282454_4283624_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371

Protein	Function_ID	Function_description	E-value
CP027255.1\|AVL11045.1\|4271009_4272614_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP027255.1\|AVL11052.1\|4279946_4280879_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP027255.1\|AVL11042.1\|4268731_4269400_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.32003e-76
CP027255.1\|AVL11047.1\|4273617_4274874_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
CP027255.1\|AVL11048.1\|4274914_4276288_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP027255.1\|AVL11038.1\|4264602_4264812_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP027255.1\|AVL11051.1\|4278622_4279834_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP027255.1\|AVL11053.1\|4280875_4281901_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP027255.1\|AVL11050.1\|4277183_4278332_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP027255.1\|AVL11037.1\|4262633_4264046_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP027255.1\|AVL11044.1\|4270185_4270998_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.81486e-175
CP027255.1\|AVL11046.1\|4272739_4273045_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
CP027255.1\|AVL11039.1\|4265267_4265894_+\|hypothetical-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
CP027255.1\|AVL11041.1\|4268020_4268668_+\|hypothetical-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	2.09841e-122
CP027255.1\|AVL11049.1\|4276502_4277144_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
CP027255.1\|AVL11043.1\|4269396_4270182_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.33298e-163
CP027255.1\|AVL11040.1\|4265914_4268017_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
CP027255.1\|AVL11056.1\|4282454_4283624_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98

>CP027255.1|AVL11046.1|4272739_4273045_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP027255.1|AVL11045.1|4271009_4272614_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>CP027255.1|AVL11044.1|4270185_4270998_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATTGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC
>CP027255.1|AVL11043.1|4269396_4270182_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP027255.1|AVL11042.1|4268731_4269400_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP027255.1|AVL11041.1|4268020_4268668_+|hypothetical-protein
MGEMNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSVAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP027255.1|AVL11040.1|4265914_4268017_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>CP027255.1|AVL11039.1|4265267_4265894_+|hypothetical-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP027255.1|AVL11038.1|4264602_4264812_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP027255.1|AVL11037.1|4262633_4264046_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP027255.1|AVL11047.1|4273617_4274874_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP027255.1|AVL11048.1|4274914_4276288_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVKPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>CP027255.1|AVL11049.1|4276502_4277144_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP027255.1|AVL11050.1|4277183_4278332_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP027255.1|AVL11051.1|4278622_4279834_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTRVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>CP027255.1|AVL11052.1|4279946_4280879_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP027255.1|AVL11053.1|4280875_4281901_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP027255.1|AVL11054.1|4281888_4282113_-|hypothetical-protein
MISVFTTSPFRQDRPKFHAYTICVLAIDPFLTLRVVFPAYRNTFVVRKVCKGKRLPCDFAGAEVRVWSEMEWQQ
>CP027255.1|AVL11055.1|4282199_4282289_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP027255.1|AVL11056.1|4282454_4283624_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027255_3	3.1\|4273223\|38\|CP027255\|CRISPRCasFinder	4273223-4273260	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP027255_1	1.1\|630507\|31\|CP027255\|CRT	630507-630537	31	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246938-246968	3	0.903
CP027255_1	1.5\|630629\|30\|CP027255\|CRISPRCasFinder	630629-630658	30	NZ_CP025805	Sulfitobacter sp. SK012 plasmid unnamed1, complete sequence	187229-187258	7	0.767
CP027255_1	1.5\|630629\|30\|CP027255\|CRISPRCasFinder	630629-630658	30	NC_021871	Salmonella bongori N268-08 plasmid RM1, complete sequence	152-181	7	0.767
CP027255_1	1.5\|630629\|30\|CP027255\|CRISPRCasFinder	630629-630658	30	NZ_LR792629	Klebsiella pneumoniae isolate SB5881 plasmid SB5881_II	53383-53412	7	0.767
CP027255_1	1.5\|630629\|30\|CP027255\|CRISPRCasFinder	630629-630658	30	NZ_CP014763	Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence	176176-176205	7	0.767
CP027255_1	1.5\|630629\|30\|CP027255\|CRISPRCasFinder	630629-630658	30	NZ_CP023417	Klebsiella pneumoniae strain 1050 plasmid pKp1050-1, complete sequence	203019-203048	7	0.767
CP027255_1	1.5\|630629\|30\|CP027255\|CRISPRCasFinder	630629-630658	30	NZ_FO834905	Klebsiella pneumoniae strain Kp52.145 plasmid II, complete sequence	85882-85911	7	0.767
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	207611-207642	7	0.781
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	222835-222866	7	0.781
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	131047-131078	7	0.781
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	349369-349400	7	0.781
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	116770-116801	7	0.781
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	349371-349402	7	0.781
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	141808-141839	7	0.781
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	348980-349011	7	0.781
CP027255_2	2.12\|646891\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646891-646922	32	NZ_CP016361	Bacillus cereus strain M13 plasmid pBCM1301, complete sequence	18551-18582	7	0.781
CP027255_2	2.12\|646891\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646891-646922	32	NZ_CP009595	Bacillus cereus strain 3a plasmid pBFC_3, complete sequence	146051-146082	7	0.781
CP027255_2	2.12\|646891\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646891-646922	32	NZ_CP009606	Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence	12286-12317	7	0.781
CP027255_2	2.12\|646891\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646891-646922	32	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	175728-175759	7	0.781
CP027255_2	2.12\|646891\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646891-646922	32	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	86057-86088	7	0.781
CP027255_2	2.12\|646891\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646891-646922	32	NZ_CP053992	Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence	69073-69104	7	0.781
CP027255_2	2.15\|647074\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	647074-647105	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	555773-555804	7	0.781
CP027255_2	2.21\|647440\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	647440-647471	32	AP014324	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C64, * SEQUENCING IN PROGRESS *	12836-12867	7	0.781
CP027255_2	2.21\|647440\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	647440-647471	32	NC_019515	Bacillus phage BCD7, complete genome	30491-30522	7	0.781
CP027255_1	1.3\|630629\|31\|CP027255\|CRT	630629-630659	31	NZ_CP025805	Sulfitobacter sp. SK012 plasmid unnamed1, complete sequence	187229-187259	8	0.742
CP027255_1	1.4\|630568\|30\|CP027255\|CRISPRCasFinder	630568-630597	30	NC_008741	Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence	165123-165152	8	0.733
CP027255_1	1.4\|630568\|30\|CP027255\|CRISPRCasFinder	630568-630597	30	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	33127-33156	8	0.733
CP027255_1	1.4\|630568\|30\|CP027255\|CRISPRCasFinder	630568-630597	30	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	38570-38599	8	0.733
CP027255_1	1.6\|630587\|30\|CP027255\|PILER-CR	630587-630616	30	NC_008741	Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence	165123-165152	8	0.733
CP027255_1	1.6\|630587\|30\|CP027255\|PILER-CR	630587-630616	30	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	33127-33156	8	0.733
CP027255_1	1.6\|630587\|30\|CP027255\|PILER-CR	630587-630616	30	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	38570-38599	8	0.733
CP027255_2	2.4\|646403\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646403-646434	32	NZ_CP038236	Leisingera sp. NJS201 plasmid unnamed2, complete sequence	2813-2844	8	0.75
CP027255_2	2.4\|646403\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646403-646434	32	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	353558-353589	8	0.75
CP027255_2	2.5\|646464\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646464-646495	32	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	254266-254297	8	0.75
CP027255_2	2.5\|646464\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646464-646495	32	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	402616-402647	8	0.75
CP027255_2	2.5\|646464\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646464-646495	32	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	15995-16026	8	0.75
CP027255_2	2.5\|646464\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646464-646495	32	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	160650-160681	8	0.75
CP027255_2	2.5\|646464\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646464-646495	32	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	58852-58883	8	0.75
CP027255_2	2.5\|646464\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646464-646495	32	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	58853-58884	8	0.75
CP027255_2	2.5\|646464\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646464-646495	32	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	376005-376036	8	0.75
CP027255_2	2.5\|646464\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646464-646495	32	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	146145-146176	8	0.75
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	MN434096	Klebsiella phage JIPh_Kp127, complete genome	8414-8445	8	0.75
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	MK630230	Klebsiella phage Spivey, complete genome	1815-1846	8	0.75
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	MN434094	Klebsiella phage AmPh_EK80, complete genome	8419-8450	8	0.75
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	MG459987	Klebsiella phage Sugarland, complete genome	8643-8674	8	0.75
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	MT380195	Klebsiella phage KP_LZD_B01, complete genome	3481-3512	8	0.75
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	KX845404	Klebsiella phage vB_Kpn_IME260, complete genome	8404-8435	8	0.75
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	KX845404	Klebsiella phage vB_Kpn_IME260, complete genome	121617-121648	8	0.75
CP027255_2	2.11\|646830\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646830-646861	32	NZ_CP045303	Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence	78252-78283	8	0.75
CP027255_2	2.21\|647440\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	647440-647471	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	17837-17868	8	0.75
CP027255_1	1.1\|630507\|31\|CP027255\|CRT	630507-630537	31	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141308	9	0.71
CP027255_1	1.2\|630568\|31\|CP027255\|CRT	630568-630598	31	NC_008741	Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence	165123-165153	9	0.71
CP027255_1	1.2\|630568\|31\|CP027255\|CRT	630568-630598	31	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	33126-33156	9	0.71
CP027255_1	1.2\|630568\|31\|CP027255\|CRT	630568-630598	31	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	38569-38599	9	0.71
CP027255_2	2.1\|646220\|32\|CP027255\|CRISPRCasFinder,CRT	646220-646251	32	MK249151	Blackfly microvirus SF02 isolate 049, complete genome	1908-1939	9	0.719
CP027255_2	2.3\|646342\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646342-646373	32	NC_017140	Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence	5097-5128	9	0.719
CP027255_2	2.4\|646403\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646403-646434	32	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	1036450-1036481	9	0.719
CP027255_2	2.4\|646403\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646403-646434	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1555010-1555041	9	0.719
CP027255_2	2.4\|646403\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646403-646434	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	619383-619414	9	0.719
CP027255_2	2.6\|646525\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646525-646556	32	HQ615693	Synechococcus phage S-CRM01, complete genome	2748-2779	9	0.719
CP027255_2	2.14\|647013\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	647013-647044	32	CP024913	Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence	8579-8610	9	0.719
CP027255_2	2.1\|646220\|32\|CP027255\|CRISPRCasFinder,CRT	646220-646251	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	450688-450719	10	0.688
CP027255_2	2.2\|646281\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646281-646312	32	NZ_CP039902	Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence	33041-33072	10	0.688
CP027255_2	2.2\|646281\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646281-646312	32	NZ_CP039893	Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence	217865-217896	10	0.688
CP027255_2	2.2\|646281\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646281-646312	32	NZ_KY000025	Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence	208000-208031	10	0.688
CP027255_2	2.2\|646281\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646281-646312	32	NZ_KY000029	Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence	208000-208031	10	0.688
CP027255_2	2.4\|646403\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646403-646434	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	823434-823465	10	0.688
CP027255_2	2.4\|646403\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646403-646434	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	682589-682620	10	0.688
CP027255_2	2.12\|646891\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646891-646922	32	MG592472	Vibrio phage 1.100.O._10N.261.45.C3, partial genome	31628-31659	10	0.688
CP027255_2	2.12\|646891\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	646891-646922	32	MG592414	Vibrio phage 1.030.O._10N.222.55.F9, partial genome	30361-30392	10	0.688
CP027255_2	2.19\|647318\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	647318-647349	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	775203-775234	11	0.656
CP027255_2	2.19\|647318\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	647318-647349	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	332045-332076	11	0.656
CP027255_2	2.19\|647318\|32\|CP027255\|CRISPRCasFinder,CRT,PILER-CR	647318-647349	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	184472-184503	11	0.656

1. spacer 3.1|4273223|38|CP027255|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

2. spacer 1.1|630507|31|CP027255|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.903

taagtgatatccatcatcgcatccagtgcgc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgt	Protospacer
.*******.*********************.

3. spacer 1.5|630629|30|CP027255|CRISPRCasFinder matches to NZ_CP025805 (Sulfitobacter sp. SK012 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cttactcattcagaacgctgcatgaaatat	CRISPR spacer
caatgtcatgcaaaacgctgcatgaaataa	Protospacer
*    **** **.****************

4. spacer 1.5|630629|30|CP027255|CRISPRCasFinder matches to NC_021871 (Salmonella bongori N268-08 plasmid RM1, complete sequence) position: , mismatch: 7, identity: 0.767

cttactcattcagaacgctgcatgaaatat	CRISPR spacer
tttatctgttcagaacgctgaatgaaatac	Protospacer
.***....************ ********.

5. spacer 1.5|630629|30|CP027255|CRISPRCasFinder matches to NZ_LR792629 (Klebsiella pneumoniae isolate SB5881 plasmid SB5881_II) position: , mismatch: 7, identity: 0.767

cttactcattcagaacgctgcatgaaatat	CRISPR spacer
tttatctgttcagaacgctgcatgaagtac	Protospacer
.***....******************.**.

6. spacer 1.5|630629|30|CP027255|CRISPRCasFinder matches to NZ_CP014763 (Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence) position: , mismatch: 7, identity: 0.767

cttactcattcagaacgctgcatgaaatat	CRISPR spacer
tttatctgttcagaacgctgcatgaagtac	Protospacer
.***....******************.**.

7. spacer 1.5|630629|30|CP027255|CRISPRCasFinder matches to NZ_CP023417 (Klebsiella pneumoniae strain 1050 plasmid pKp1050-1, complete sequence) position: , mismatch: 7, identity: 0.767

cttactcattcagaacgctgcatgaaatat	CRISPR spacer
tttatctgttcagaacgctgcatgaagtac	Protospacer
.***....******************.**.

8. spacer 1.5|630629|30|CP027255|CRISPRCasFinder matches to NZ_FO834905 (Klebsiella pneumoniae strain Kp52.145 plasmid II, complete sequence) position: , mismatch: 7, identity: 0.767

cttactcattcagaacgctgcatgaaatat	CRISPR spacer
tttatctgttcagaacgctgcatgaagtac	Protospacer
.***....******************.**.

9. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

10. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

11. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

12. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

13. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

14. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

15. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

16. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

17. spacer 2.12|646891|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016361 (Bacillus cereus strain M13 plasmid pBCM1301, complete sequence) position: , mismatch: 7, identity: 0.781

cagcagagcggatgaaaaagcagtaaataacg	CRISPR spacer
aatcagagtggatgaaaaagcattaaatgaaa	Protospacer
 * *****.************* *****.* .

18. spacer 2.12|646891|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 7, identity: 0.781

cagcagagcggatgaaaaagcagtaaataacg	CRISPR spacer
aatcagagtggatgaaaaagcattaaatgaaa	Protospacer
 * *****.************* *****.* .

19. spacer 2.12|646891|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 7, identity: 0.781

cagcagagcggatgaaaaagcagtaaataacg	CRISPR spacer
aatcagagtggatgaaaaagcattaaatgaaa	Protospacer
 * *****.************* *****.* .

20. spacer 2.12|646891|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 7, identity: 0.781

cagcagagcggatgaaaaagcagtaaataacg	CRISPR spacer
aatcagagtggatgaaaaagcattaaatgaaa	Protospacer
 * *****.************* *****.* .

21. spacer 2.12|646891|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cagcagagcggatgaaaaagcagtaaataacg	CRISPR spacer
aatcagagtggatgaaaaagcattaaatgaaa	Protospacer
 * *****.************* *****.* .

22. spacer 2.12|646891|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

cagcagagcggatgaaaaagcagtaaataacg	CRISPR spacer
aatcagagtggatgaaaaagcattaaatgaaa	Protospacer
 * *****.************* *****.* .

23. spacer 2.15|647074|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

cgccgcggactcacgagcaggccatcacagac-	CRISPR spacer
aggcgcgaactgacgagcaggccatc-cacgcg	Protospacer
 * ****.*** ************** ** .*

24. spacer 2.21|647440|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to AP014324 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C64, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

ctcaccagttttggggtcaataaccgggggat	CRISPR spacer
cttaccagttttggggtcaataattttctgat	Protospacer
**.********************..    ***

25. spacer 2.21|647440|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NC_019515 (Bacillus phage BCD7, complete genome) position: , mismatch: 7, identity: 0.781

ctcaccagttttggggtcaataaccgggggat	CRISPR spacer
ctccccagttttcgggtcaataattggctcat	Protospacer
*** ******** **********..**   **

26. spacer 1.3|630629|31|CP027255|CRT matches to NZ_CP025805 (Sulfitobacter sp. SK012 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cttactcattcagaacgctgcatgaaatatg	CRISPR spacer
caatgtcatgcaaaacgctgcatgaaataaa	Protospacer
*    **** **.**************** .

27. spacer 1.4|630568|30|CP027255|CRISPRCasFinder matches to NC_008741 (Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence) position: , mismatch: 8, identity: 0.733

ttactcgccggggaatacgccccgcgccac	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgt	Protospacer
*   .******** **********.***..

28. spacer 1.4|630568|30|CP027255|CRISPRCasFinder matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 8, identity: 0.733

ttactcgccggggaatacgccccgcgccac	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgt	Protospacer
*   .******** **********.***..

29. spacer 1.4|630568|30|CP027255|CRISPRCasFinder matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 8, identity: 0.733

ttactcgccggggaatacgccccgcgccac	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgt	Protospacer
*   .******** **********.***..

30. spacer 1.6|630587|30|CP027255|PILER-CR matches to NC_008741 (Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence) position: , mismatch: 8, identity: 0.733

ttactcgccggggaatacgccccgcgccac	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgt	Protospacer
*   .******** **********.***..

31. spacer 1.6|630587|30|CP027255|PILER-CR matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 8, identity: 0.733

ttactcgccggggaatacgccccgcgccac	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgt	Protospacer
*   .******** **********.***..

32. spacer 1.6|630587|30|CP027255|PILER-CR matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 8, identity: 0.733

ttactcgccggggaatacgccccgcgccac	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgt	Protospacer
*   .******** **********.***..

33. spacer 2.4|646403|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038236 (Leisingera sp. NJS201 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
ccggaactgctgatgccgatgatcgggctcga	Protospacer
.* * *..*** ********.**********.

34. spacer 2.4|646403|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 8, identity: 0.75

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
cacgccgagctcatcccgataatcggggtcga	Protospacer
. ***   ****** ************ ***.

35. spacer 2.5|646464|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaagaaagcaaata	Protospacer
*.**  ** *********** ********  .

36. spacer 2.5|646464|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

37. spacer 2.5|646464|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

38. spacer 2.5|646464|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

39. spacer 2.5|646464|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

40. spacer 2.5|646464|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

41. spacer 2.5|646464|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

42. spacer 2.5|646464|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

43. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to MN434096 (Klebsiella phage JIPh_Kp127, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

44. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to MK630230 (Klebsiella phage Spivey, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

45. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to MN434094 (Klebsiella phage AmPh_EK80, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

46. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to MG459987 (Klebsiella phage Sugarland, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

47. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to MT380195 (Klebsiella phage KP_LZD_B01, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

48. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to KX845404 (Klebsiella phage vB_Kpn_IME260, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

49. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to KX845404 (Klebsiella phage vB_Kpn_IME260, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

50. spacer 2.11|646830|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgccttaattctgagcaggctatcggagt	CRISPR spacer
ctgcgcctgaattcagagcaggccaagcgctt	Protospacer
******** ***** ********.*   *  *

51. spacer 2.21|647440|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 8, identity: 0.75

ctcacca--gttttggggtcaataaccgggggat	CRISPR spacer
--aagcattgttttggggacaaaaaccgggggtg	Protospacer
   * **  ********* *** *********

52. spacer 1.1|630507|31|CP027255|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.71

taagtgatatccatcatcgcatccagtgcgc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgc	Protospacer
.  .* ..***********  **********

53. spacer 1.2|630568|31|CP027255|CRT matches to NC_008741 (Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence) position: , mismatch: 9, identity: 0.71

ttactcgccggggaatacgccccgcgccacg	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgta	Protospacer
*   .******** **********.***...

54. spacer 1.2|630568|31|CP027255|CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 9, identity: 0.71

ttactcgccggggaatacgccccgcgccacg	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgta	Protospacer
*   .******** **********.***...

55. spacer 1.2|630568|31|CP027255|CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 9, identity: 0.71

ttactcgccggggaatacgccccgcgccacg	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgta	Protospacer
*   .******** **********.***...

56. spacer 2.1|646220|32|CP027255|CRISPRCasFinder,CRT matches to MK249151 (Blackfly microvirus SF02 isolate 049, complete genome) position: , mismatch: 9, identity: 0.719

ttttgtgccctggcgttttgctggctctcgcg	CRISPR spacer
atttgttccctggcgttttgttgggacatggc	Protospacer
 ***** *************.***  * .*

57. spacer 2.3|646342|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NC_017140 (Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence) position: , mismatch: 9, identity: 0.719

cgttcctcgcattatttccctttcttcttcga	CRISPR spacer
ccgcgctcgctttgtttccctttcttctccat	Protospacer
*  . ***** **.**************.*.

58. spacer 2.4|646403|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
tccgtatcgctcatgtcgataatcctaattca	Protospacer
****.**********.********  . *. .

59. spacer 2.4|646403|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
agctcgaagcccatgccgatgatcgggctcgc	Protospacer
  * *.  **.*********.**********

60. spacer 2.4|646403|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
agctcgaagcccatgccgatgatcgggctcgc	Protospacer
  * *.  **.*********.**********

61. spacer 2.6|646525|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to HQ615693 (Synechococcus phage S-CRM01, complete genome) position: , mismatch: 9, identity: 0.719

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
aatttctgtattgctcaatgatatattgaggc	Protospacer
 ********* ******* ****** . .*..

62. spacer 2.14|647013|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to CP024913 (Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence) position: , mismatch: 9, identity: 0.719

ttttctgaggctgtttatgaggataaaaaatt	CRISPR spacer
atggatgaggctgttaatgagggtaaaaatga	Protospacer
 *   ********** ******.******

63. spacer 2.1|646220|32|CP027255|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttttgtgccctggcgttttgctggctctcgcg	CRISPR spacer
accggtgccctggcgctttgcaggctccttcc	Protospacer
 .. ***********.***** *****.. *

64. spacer 2.2|646281|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039902 (Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

65. spacer 2.2|646281|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039893 (Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

66. spacer 2.2|646281|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000025 (Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

67. spacer 2.2|646281|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000029 (Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

68. spacer 2.4|646403|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
tacgcatcgcccatgccgatgatcgccgcaac	Protospacer
* ********.*********.****   . .

69. spacer 2.4|646403|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 10, identity: 0.688

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
tacgcatcgcccatgccgatgatcgccgcaac	Protospacer
* ********.*********.****   . .

70. spacer 2.12|646891|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to MG592472 (Vibrio phage 1.100.O._10N.261.45.C3, partial genome) position: , mismatch: 10, identity: 0.688

cagcagagcggatgaaaaagcagtaaataacg	CRISPR spacer
tattgatttggttgaaaaggcagtaaataacg	Protospacer
.* ...  .** ******.*************

71. spacer 2.12|646891|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to MG592414 (Vibrio phage 1.030.O._10N.222.55.F9, partial genome) position: , mismatch: 10, identity: 0.688

cagcagagcggatgaaaaagcagtaaataacg	CRISPR spacer
tattgatttggttgaaaaggcagtaaataacg	Protospacer
.* ...  .** ******.*************

72. spacer 2.19|647318|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.656

gctgacctgtcgaatccgtatagccgccgttc	CRISPR spacer
atcaacctgtcgaatccggagagccgcgtcgt	Protospacer
....************** * ******  . .

73. spacer 2.19|647318|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 11, identity: 0.656

gctgacctgtcgaatccgtatagccgccgttc	CRISPR spacer
atcaacctgtcgaatccggaaagccgcgtcgt	Protospacer
....************** * ******  . .

74. spacer 2.19|647318|32|CP027255|CRISPRCasFinder,CRT,PILER-CR matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 11, identity: 0.656

gctgacctgtcgaatccgtatagccgccgttc	CRISPR spacer
atcaacctgtcgaatccggaaagccgcatcgt	Protospacer
....************** * ******  . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

607044 : 614184

Escherichia_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL07635.1\|607044_609606_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.8e-31	20.6
AVL07636.1\|609711_610368_+	serine/threonine protein phosphatase	A0A222YWF0	Escherichia_phage	1.1e-50	47.9
AVL07637.1\|610418_611186_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
AVL07638.1\|611381_612290_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AVL07639.1\|612286_613549_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AVL07640.1\|613545_614184_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_2

923539 : 962003

Burkholderia_virus(41.46%)

head,integrase,plate,tail

attL 927096:927110|attR 963037:963051

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL07925.1\|923539_923938_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	3.9e-30	55.9
AVL07926.1\|923909_924362_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.6e-24	46.6
AVL07927.1\|924351_924567_-	hypothetical protein	NA	NA	NA	NA
AVL07928.1\|924556_924787_-	hypothetical protein	NA	NA	NA	NA
AVL07929.1\|924783_925467_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	4.5e-34	36.9
AVL07930.1\|925463_925769_-	hypothetical protein	NA	NA	NA	NA
AVL07931.1\|925778_926051_-	hypothetical protein	NA	NA	NA	NA
AVL11714.1\|926107_926329_+	hypothetical protein	NA	NA	NA	NA
AVL07932.1\|926339_926870_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
AVL07933.1\|926897_927167_-	hypothetical protein	NA	NA	NA	NA
927096:927110	attL	NA	NA	NA	NA
AVL07934.1\|927169_928336_-	hypothetical protein	A4JWN1	Burkholderia_virus	9.7e-122	59.7
AVL07935.1\|928346_930116_-\|integrase	integrase	Q6QIE0	Burkholderia_phage	6.2e-229	68.3
AVL07936.1\|930119_931031_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	2.0e-74	55.3
AVL07937.1\|931041_931350_-	IclR family transcriptional regulator	Q5ZR02	Pseudomonas_phage	3.5e-23	55.9
AVL07938.1\|931402_931591_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
AVL07939.1\|931691_932030_+	transcriptional regulator	F6MII3	Haemophilus_phage	4.8e-05	34.4
AVL07940.1\|932146_932911_-	restriction endonuclease subunit M	A2I2Y7	Vibrio_virus	4.0e-100	64.4
AVL07941.1\|933102_933318_-	hypothetical protein	NA	NA	NA	NA
AVL07942.1\|933316_933721_+	hypothetical protein	NA	NA	NA	NA
AVL07943.1\|933696_934440_-	hypothetical protein	NA	NA	NA	NA
AVL07944.1\|934570_934921_+	hypothetical protein	A4JWP3	Burkholderia_virus	9.0e-23	53.9
AVL07945.1\|934923_935661_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.9e-63	59.5
AVL11715.1\|935689_936301_+	hypothetical protein	A0A0S4L1H0	Pseudomonas_phage	6.9e-10	34.2
AVL07946.1\|936297_936624_+	hypothetical protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
AVL07947.1\|936623_936935_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	4.0e-30	60.6
AVL07948.1\|936937_937480_+	DUF3486 domain-containing protein	A4JWJ3	Burkholderia_virus	4.9e-44	53.3
AVL07949.1\|937476_939000_+	hypothetical protein	A4JWJ4	Burkholderia_virus	1.8e-184	62.5
AVL07950.1\|938999_940496_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	6.1e-169	59.6
AVL07951.1\|940476_941298_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	3.1e-98	61.5
AVL07952.1\|941300_941759_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
AVL07953.1\|941973_943089_+	peptidase	A4JWJ9	Burkholderia_virus	7.2e-98	51.6
AVL07954.1\|943103_944057_+	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
AVL07955.1\|944066_944405_+	DUF2190 domain-containing protein	NA	NA	NA	NA
AVL07956.1\|944406_944853_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
AVL07957.1\|944852_945317_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
AVL07958.1\|945313_945568_+	hypothetical protein	NA	NA	NA	NA
AVL07959.1\|945557_946985_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
AVL07960.1\|946984_947506_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
AVL07961.1\|947508_947790_+	hypothetical protein	NA	NA	NA	NA
AVL07962.1\|947887_948223_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AVL07963.1\|948146_948305_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AVL07964.1\|948380_951593_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	5.8e-84	31.3
AVL07965.1\|951592_952477_+	hypothetical protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
AVL07966.1\|952473_952689_+	hypothetical protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
AVL07967.1\|952676_953849_+	phage protein D	Q6QIA2	Burkholderia_phage	7.3e-85	47.1
AVL07968.1\|953845_954442_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	5.4e-36	45.2
AVL07969.1\|954496_954844_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.7e-34	61.5
AVL07970.1\|954834_955938_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-106	55.0
AVL07971.1\|955930_956509_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
AVL07972.1\|956511_958104_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.4e-38	42.9
AVL07973.1\|958110_958725_-\|tail	tail assembly chaperone	Q9MCR5	Enterobacteria_phage	1.7e-61	61.5
AVL07974.1\|958724_959207_-\|tail	phage tail protein	K7P7Q7	Enterobacteria_phage	1.1e-26	44.0
AVL11716.1\|959247_959721_-\|tail	phage tail protein	Q9MCR6	Enterobacteria_phage	2.1e-30	45.4
AVL07975.1\|959822_960395_+	DNA invertase	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
AVL07976.1\|961118_962003_+	NAD(P)-dependent oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.7e-65	47.1
963037:963051	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2703029 : 2765231

Emiliania_huxleyi_virus(12.5%)

plate,tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL09568.1\|2703029_2704382_+\|protease	zinc metalloprotease RseP	NA	NA	NA	NA
AVL09569.1\|2704411_2706844_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
AVL09570.1\|2706965_2707451_+	chaperone protein Skp	NA	NA	NA	NA
AVL09571.1\|2707454_2708480_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
AVL09572.1\|2708584_2709040_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AVL09573.1\|2709043_2709832_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AVL09574.1\|2709831_2710980_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
AVL09575.1\|2710976_2711573_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
AVL09576.1\|2711609_2715092_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
AVL09577.1\|2715104_2716064_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
AVL09578.1\|2716162_2718304_+	lysine decarboxylase LdcC	NA	NA	NA	NA
AVL09579.1\|2718360_2718750_+	VOC family protein	NA	NA	NA	NA
AVL09580.1\|2718814_2720113_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AVL11782.1\|2720161_2720416_-	protein rof	NA	NA	NA	NA
AVL09581.1\|2720408_2720609_-	hypothetical protein	NA	NA	NA	NA
AVL09582.1\|2720774_2721320_+	hypothetical protein	NA	NA	NA	NA
AVL09583.1\|2721316_2721739_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
AVL09584.1\|2721752_2722463_+	copper homeostasis/adhesion lipoprotein NlpE	NA	NA	NA	NA
AVL09585.1\|2722469_2722721_-	hypothetical protein	NA	NA	NA	NA
AVL09586.1\|2722712_2723693_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
AVL09587.1\|2723895_2724720_-	endopeptidase	NA	NA	NA	NA
AVL09588.1\|2724773_2726492_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
AVL09589.1\|2726602_2727310_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AVL09590.1\|2727306_2727711_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
AVL09591.1\|2727828_2728644_-	methionine ABC transporter substrate-binding protein MetQ	NA	NA	NA	NA
AVL09592.1\|2728683_2729337_-	methionine ABC transporter	NA	NA	NA	NA
AVL09593.1\|2729329_2730361_-	methionine import ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
AVL09594.1\|2730548_2731124_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
AVL09595.1\|2736885_2737689_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	3.2e-39	36.6
AVL09596.1\|2737685_2738600_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVL09597.1\|2738840_2739641_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
AVL09598.1\|2739718_2740489_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AVL09599.1\|2740536_2741895_-	lytic transglycosylase	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
AVL09600.1\|2741966_2742722_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AVL09601.1\|2742755_2743478_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AVL09602.1\|2743474_2743942_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
AVL11783.1\|2744006_2744738_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
AVL09603.1\|2744677_2744857_-	hypothetical protein	NA	NA	NA	NA
AVL09604.1\|2745273_2746059_+	aminopeptidase	NA	NA	NA	NA
AVL09605.1\|2746195_2746675_-	hypothetical protein	NA	NA	NA	NA
AVL09606.1\|2746684_2747599_-	hypothetical protein	NA	NA	NA	NA
AVL09607.1\|2747642_2748125_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AVL09608.1\|2748148_2749501_-	hypothetical protein	NA	NA	NA	NA
AVL09609.1\|2749511_2752976_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AVL09610.1\|2753054_2754533_-	type VI secretion system protein TssA	NA	NA	NA	NA
AVL09611.1\|2754471_2755215_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
AVL09612.1\|2755211_2757983_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-81	30.7
AVL09613.1\|2757991_2758753_-	hypothetical protein	NA	NA	NA	NA
AVL09614.1\|2758757_2760089_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AVL09615.1\|2760091_2760616_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AVL09616.1\|2760612_2761893_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AVL09617.1\|2761917_2763000_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AVL09618.1\|2762963_2764814_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AVL09619.1\|2764817_2765231_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_4

2789371 : 2834708

Shigella_phage(43.86%)

plate,portal,protease,head,capsid,tail,holin,integrase,terminase

attL 2793228:2793275|attR 2833282:2833329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL09643.1\|2789371_2790427_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.6e-118	61.1
AVL09644.1\|2790714_2791818_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AVL09645.1\|2791829_2793083_+	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.3e-95	47.0
2793228:2793275	attL	NA	NA	NA	NA
AVL11785.1\|2793287_2794226_-\|integrase	site-specific integrase	U5P434	Shigella_phage	4.7e-183	99.7
AVL09646.1\|2794327_2794678_-	DNA-binding protein	U5P4J3	Shigella_phage	4.9e-61	100.0
AVL09647.1\|2794677_2794983_-	hypothetical protein	U5P0J0	Shigella_phage	3.4e-50	99.0
AVL09648.1\|2794982_2795345_-	hypothetical protein	U5P092	Shigella_phage	2.1e-67	99.2
AVL09649.1\|2795335_2795872_-	HD family hydrolase	S5MW55	Escherichia_phage	1.8e-99	98.3
AVL09650.1\|2796020_2796245_+	hypothetical protein	A0A291AWX8	Escherichia_phage	1.1e-13	64.6
AVL09651.1\|2796385_2796631_+	hypothetical protein	NA	NA	NA	NA
AVL09652.1\|2796548_2796824_-	hypothetical protein	Q8SBF7	Shigella_phage	7.0e-47	97.8
AVL09653.1\|2796832_2797036_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	2.6e-14	66.7
AVL09654.1\|2797377_2798454_-	hypothetical protein	E7C9Q8	Salmonella_phage	7.6e-121	59.9
AVL11786.1\|2798624_2799329_-	XRE family transcriptional regulator	G8C7U1	Escherichia_phage	3.4e-69	59.9
AVL09655.1\|2799435_2799699_+	hypothetical protein	H6WRX5	Salmonella_phage	4.2e-09	50.0
AVL09656.1\|2799727_2800279_+	hypothetical protein	S5FXP0	Shigella_phage	6.4e-100	97.3
AVL09657.1\|2800454_2800634_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
AVL09658.1\|2800623_2801565_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.3e-153	100.0
AVL09659.1\|2801561_2802056_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.2e-86	98.1
AVL09660.1\|2802055_2802709_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
AVL09661.1\|2802705_2803032_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.0e-53	99.1
AVL09662.1\|2803028_2803418_+	hypothetical protein	A0A0P0ZD39	Stx2-converting_phage	7.8e-68	98.4
AVL09663.1\|2803437_2804235_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	3.2e-148	98.1
AVL09664.1\|2804242_2805232_+	hypothetical protein	A0A291AWV9	Escherichia_phage	1.2e-194	99.1
AVL09665.1\|2805249_2805597_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	8.0e-56	85.0
AVL09666.1\|2805610_2806702_-	hypothetical protein	Q332C0	Clostridium_botulinum_C_phage	5.3e-05	35.4
AVL09667.1\|2806725_2807298_-	hypothetical protein	A0A1L2CVC4	Pectobacterium_phage	2.3e-07	40.4
AVL09668.1\|2807294_2808050_-	hypothetical protein	NA	NA	NA	NA
AVL09669.1\|2808386_2808713_+\|holin	phage holin, lambda family	S5FM86	Shigella_phage	3.4e-56	98.1
AVL09670.1\|2808716_2809193_+	lysozyme	S5FV07	Shigella_phage	8.3e-88	98.7
AVL09671.1\|2809176_2809569_+	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	6.5e-54	89.2
AVL09672.1\|2810021_2810372_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	6.8e-63	95.7
AVL09673.1\|2810489_2810993_+\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	2.3e-88	99.4
AVL09674.1\|2810989_2812723_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.8
AVL09675.1\|2812734_2812917_+	hypothetical protein	M1FJ83	Enterobacteria_phage	1.7e-25	100.0
AVL09676.1\|2812916_2814158_+\|portal	phage portal protein	U5P411	Shigella_phage	1.3e-241	99.5
AVL09677.1\|2814099_2814786_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	9.4e-125	99.1
AVL09678.1\|2814800_2816006_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.8e-224	100.0
AVL09679.1\|2816055_2816256_+	hypothetical protein	S5FNU1	Shigella_phage	3.4e-27	100.0
AVL09680.1\|2816258_2816582_+\|head,tail	phage gp6-like head-tail connector protein	S5FKK6	Shigella_phage	5.1e-57	100.0
AVL09681.1\|2816578_2816989_+\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	3.1e-75	100.0
AVL09682.1\|2816963_2817470_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.1e-90	99.4
AVL09683.1\|2817466_2818027_+	hypothetical protein	Q8SBH4	Shigella_phage	1.2e-104	98.4
AVL09684.1\|2818035_2818206_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
AVL09685.1\|2818189_2819686_+\|tail	phage tail protein	M1FN90	Enterobacteria_phage	7.0e-274	99.4
AVL09686.1\|2819685_2820042_+\|tail	phage tail protein	U5P076	Shigella_phage	9.0e-63	99.2
AVL09687.1\|2820041_2820311_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
AVL09688.1\|2820277_2820460_+	hypothetical protein	NA	NA	NA	NA
AVL09689.1\|2820452_2822285_+\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	2.5e-305	99.5
AVL09690.1\|2822366_2822879_+	hypothetical protein	NA	NA	NA	NA
AVL09691.1\|2822969_2824298_+	DNA circularization protein	Q8SBG8	Shigella_phage	1.9e-246	99.1
AVL09692.1\|2824294_2825374_+\|plate	baseplate protein	Q8SBG7	Shigella_phage	2.6e-206	99.4
AVL09693.1\|2825373_2825922_+\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	1.8e-94	96.2
AVL09694.1\|2826322_2827381_+\|plate	phage baseplate protein	Q8SBG4	Shigella_phage	5.2e-199	98.3
AVL09695.1\|2827371_2827956_+	DUF2313 domain-containing protein	O22003	Shigella_phage	5.4e-113	99.5
AVL09696.1\|2827959_2828622_+	hypothetical protein	A0A0F7LBW5	Escherichia_phage	9.5e-66	87.2
AVL09697.1\|2828642_2829086_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.1e-81	99.3
AVL09698.1\|2829057_2829660_-\|tail	phage tail protein	M1SV83	Escherichia_phage	6.6e-98	90.0
AVL09699.1\|2829659_2830151_-\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	6.9e-45	58.8
AVL09700.1\|2830180_2830735_+	DNA-invertase	A0A1S6L009	Salmonella_phage	3.1e-86	86.2
AVL09701.1\|2831105_2831810_+	DUF4145 domain-containing protein	NA	NA	NA	NA
AVL09702.1\|2832171_2832951_+	hypothetical protein	NA	NA	NA	NA
AVL09703.1\|2833057_2833216_+	hypothetical protein	NA	NA	NA	NA
AVL09704.1\|2833493_2834708_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	8.8e-134	56.7
2833282:2833329	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3729755 : 3796377

Enterobacteria_phage(47.06%)

tRNA,portal,capsid,head,tail,holin,integrase,terminase,transposase

attL 3726846:3726861|attR 3737116:3737131

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3726846:3726861	attL	NA	NA	NA	NA
AVL10527.1\|3729755_3730874_-\|integrase	integrase	Q77Z04	Phage_21	4.5e-84	44.4
AVL10528.1\|3730842_3731112_-	excisionase	NA	NA	NA	NA
AVL10529.1\|3733691_3733895_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AVL10530.1\|3733897_3734080_-	cell division inhibition protein DicB	NA	NA	NA	NA
AVL10531.1\|3734974_3735145_-	hypothetical protein	NA	NA	NA	NA
AVL11816.1\|3735104_3735260_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.0e-07	53.2
AVL10532.1\|3735318_3735522_-	hypothetical protein	NA	NA	NA	NA
AVL10533.1\|3735558_3735978_-	transcriptional regulator	A0A2I6PIE7	Escherichia_phage	5.5e-19	46.5
AVL10534.1\|3736057_3736312_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
AVL10535.1\|3736308_3736731_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.3e-68	92.9
AVL10536.1\|3736808_3737597_+	hypothetical protein	G9L6A8	Escherichia_phage	2.0e-41	64.3
3737116:3737131	attR	NA	NA	NA	NA
AVL10537.1\|3737603_3738350_+	DNA replication protein DnaC	V5UQI5	Shigella_phage	4.9e-111	78.9
AVL10538.1\|3738321_3739134_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.6e-115	87.4
AVL10539.1\|3739149_3739572_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	5.9e-61	87.8
AVL10540.1\|3739778_3740333_-	hypothetical protein	NA	NA	NA	NA
AVL10541.1\|3740329_3741262_-	hypothetical protein	NA	NA	NA	NA
AVL10542.1\|3741225_3741627_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	1.1e-19	82.3
AVL10543.1\|3741687_3741843_+	protein HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
AVL10544.1\|3741986_3742379_+	hypothetical protein	NA	NA	NA	NA
AVL10545.1\|3742674_3742953_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.8e-11	46.9
AVL10546.1\|3742954_3744004_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	54.9
AVL10547.1\|3744016_3744388_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.1e-38	65.5
AVL11817.1\|3744380_3744764_+	antitermination protein	Q777W5	Enterobacteria_phage	5.9e-60	84.8
AVL10548.1\|3745494_3745725_+	hypothetical protein	NA	NA	NA	NA
AVL10549.1\|3745748_3746492_+	AraC family transcriptional regulator	NA	NA	NA	NA
AVL10550.1\|3746671_3747064_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	1.5e-50	90.0
AVL11818.1\|3747053_3747332_+\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	1.8e-42	94.5
AVL10551.1\|3747333_3747879_+	hypothetical protein	A0A0U2I1S0	Escherichia_phage	2.0e-93	87.3
AVL10552.1\|3748196_3748490_-	lipoprotein bor	K7PL54	Enterobacteria_phage	7.2e-42	87.6
AVL10553.1\|3748714_3749125_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	5.7e-61	84.6
AVL10554.1\|3749287_3750449_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.4e-50	40.2
AVL10555.1\|3751133_3751682_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	7.2e-59	86.3
AVL10556.1\|3751653_3753570_+\|terminase	terminase	O64317	Escherichia_phage	8.7e-253	64.8
AVL10557.1\|3753573_3753783_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.0e-10	49.2
AVL11819.1\|3753827_3755351_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	1.7e-182	63.4
AVL10558.1\|3755340_3756957_+	peptidase S49 family protein	A0A0K2FI53	Enterobacteria_phage	3.4e-101	53.4
AVL10559.1\|3756997_3757333_+\|head	head decoration protein	A0A0K2FIF9	Escherichia_phage	5.2e-20	49.1
AVL10560.1\|3757402_3758431_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	5.8e-110	58.7
AVL10561.1\|3758481_3758862_+	DNA packaging protein	A0A2R9YJP4	Escherichia_phage	3.6e-09	61.1
AVL10562.1\|3758875_3759250_+\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	3.1e-29	59.8
AVL10563.1\|3759236_3759827_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.0e-68	69.4
AVL10564.1\|3759823_3760225_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	6.6e-62	83.5
AVL10565.1\|3760235_3760976_+\|tail	phage tail protein	K7PGT7	Enterobacteria_phage	2.7e-109	84.8
AVL10566.1\|3761032_3761422_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.2e-39	66.7
AVL10567.1\|3761430_3761745_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	4.0e-38	74.0
AVL10568.1\|3761728_3764752_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	75.6
AVL10569.1\|3764751_3765081_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	4.9e-47	82.4
AVL10570.1\|3765090_3765789_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	2.5e-117	85.3
AVL10571.1\|3765793_3766537_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-141	91.5
AVL10572.1\|3766434_3767082_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.2e-97	80.9
AVL10573.1\|3767142_3770541_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	98.4
AVL10574.1\|3770602_3771223_+	hypothetical protein	A0A1U8QHD6	Enterobacteria_phage	5.3e-111	99.5
AVL10575.1\|3771287_3773801_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	1.2e-76	63.4
AVL10576.1\|3773800_3774385_+\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	1.4e-105	97.9
AVL10577.1\|3774500_3774686_-	damage-inducible protein DinI	A5LH55	Enterobacteria_phage	3.7e-20	92.3
AVL10578.1\|3775099_3776785_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AVL10579.1\|3776781_3777501_+	DNA-binding response regulator	NA	NA	NA	NA
AVL10580.1\|3777547_3778018_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	2.0e-81	99.4
AVL10581.1\|3778058_3778520_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AVL10582.1\|3778644_3780645_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
AVL10583.1\|3780641_3781778_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
AVL10584.1\|3781770_3784050_-	hypothetical protein	NA	NA	NA	NA
AVL10585.1\|3784060_3785149_-	MoxR family ATPase	NA	NA	NA	NA
AVL10586.1\|3786388_3786706_-	hypothetical protein	NA	NA	NA	NA
AVL10587.1\|3786766_3790399_-	DUF4132 domain-containing protein	NA	NA	NA	NA
AVL10588.1\|3790408_3794203_-	DUF4132 domain-containing protein	NA	NA	NA	NA
AVL10589.1\|3794343_3796377_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6

DBSCAN-SWA_6

3819797 : 3859445

Escherichia_phage(24.39%)

plate,capsid,portal,head,protease,tail,lysis,integrase,terminase

attL 3821539:3821555|attR 3854297:3854313

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL10613.1\|3819797_3820697_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
AVL10614.1\|3821111_3821429_+	hypothetical protein	NA	NA	NA	NA
AVL10615.1\|3821416_3821566_+	hypothetical protein	NA	NA	NA	NA
3821539:3821555	attL	NA	NA	NA	NA
AVL10616.1\|3821693_3822701_-\|integrase	integrase	Q83VS6	Escherichia_phage	1.2e-168	85.2
AVL10617.1\|3822815_3823115_-	XRE family transcriptional regulator	Q1JS63	Enterobacteria_phage	2.8e-41	82.8
AVL10618.1\|3823234_3823504_+	hypothetical protein	Q1JS62	Enterobacteria_phage	9.0e-39	83.0
AVL10619.1\|3823568_3823988_+	hypothetical protein	NA	NA	NA	NA
AVL10620.1\|3823984_3824176_-	hypothetical protein	NA	NA	NA	NA
AVL10621.1\|3824442_3824943_+	replication protein B	M1SV55	Escherichia_phage	5.7e-79	84.9
AVL10622.1\|3825006_3825231_+	DUF2732 domain-containing protein	Q7Y4C2	Escherichia_virus	5.2e-16	66.2
AVL10623.1\|3825230_3825530_+	hypothetical protein	A0A0F7LCL4	Escherichia_phage	6.7e-19	58.9
AVL10624.1\|3825529_3825805_+	hypothetical protein	M1TAP2	Escherichia_phage	4.0e-26	62.6
AVL10625.1\|3825794_3828086_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	74.8
AVL10626.1\|3828085_3828550_+	DUF3850 domain-containing protein	Q858T3	Yersinia_virus	6.1e-43	54.9
AVL11820.1\|3828561_3828786_+	hypothetical protein	Q6K1F0	Salmonella_virus	4.9e-14	59.4
AVL10627.1\|3829086_3830715_+	DUF3696 domain-containing protein	NA	NA	NA	NA
AVL10628.1\|3830717_3831830_+	hypothetical protein	NA	NA	NA	NA
AVL10629.1\|3831925_3832933_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	3.6e-157	78.7
AVL10630.1\|3832934_3834704_-	oxidoreductase	A0A0M4RE51	Salmonella_phage	5.1e-300	84.4
AVL10631.1\|3834870_3835725_+\|capsid	capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.0e-112	70.8
AVL10632.1\|3835786_3836854_+\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	8.8e-170	83.9
AVL10633.1\|3836857_3837613_+\|terminase	terminase	O80305	Escherichia_phage	2.5e-78	71.4
AVL10634.1\|3837712_3838219_+\|head	head completion/stabilization protein	O80306	Escherichia_phage	4.9e-62	70.8
AVL10635.1\|3838218_3838422_+\|tail	phage tail protein	S4TTA0	Salmonella_phage	3.8e-26	83.6
AVL10636.1\|3838412_3838634_+	primosomal protein	A0A218M4L5	Erwinia_phage	2.9e-27	79.2
AVL10637.1\|3838617_3839127_+	lysozyme	A0A218M4K3	Erwinia_phage	2.8e-81	87.5
AVL10638.1\|3839123_3839549_+	protein lysB	A0A218M4K2	Erwinia_phage	1.3e-39	65.9
AVL10639.1\|3839523_3839682_+\|lysis	phage lysis protein	A0A218M4L1	Erwinia_phage	5.3e-15	73.1
AVL10640.1\|3839644_3840112_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	2.9e-61	72.9
AVL10641.1\|3840104_3840551_+	phage virion morphogenesis protein	O80313	Escherichia_phage	5.5e-49	68.2
AVL10642.1\|3840622_3841552_-	hypothetical protein	NA	NA	NA	NA
AVL10643.1\|3841887_3842529_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	3.6e-94	81.2
AVL10644.1\|3842525_3842876_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	8.1e-40	72.4
AVL10645.1\|3842881_3843790_+\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	1.9e-141	86.4
AVL10646.1\|3843782_3844313_+\|tail	phage tail protein I	Q37841	Escherichia_phage	1.1e-93	90.9
AVL10647.1\|3844323_3846159_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	5.8e-121	58.1
AVL10648.1\|3846158_3846737_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.1e-57	55.0
AVL10649.1\|3846873_3848067_+\|tail	phage tail protein	S4TRX2	Salmonella_phage	1.3e-185	82.4
AVL10650.1\|3848079_3848598_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.0e-78	82.6
AVL10651.1\|3848651_3848966_+\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.7e-28	66.0
AVL10652.1\|3848998_3849121_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.3e-13	87.2
AVL10653.1\|3849110_3851552_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	7.1e-308	74.9
AVL10654.1\|3851565_3852030_+\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	2.1e-59	72.7
AVL10655.1\|3852026_3853196_+	hypothetical protein	Q6K1G4	Salmonella_virus	1.3e-161	75.4
AVL10656.1\|3853271_3853493_+	transcriptional regulator	A0A2I8TV89	Erwinia_phage	7.6e-28	75.3
AVL10657.1\|3853720_3853981_-	hypothetical protein	NA	NA	NA	NA
AVL10658.1\|3854532_3855894_-\|protease	protease	Q6DW11	Phage_TP	1.1e-217	100.0
3854297:3854313	attR	NA	NA	NA	NA
AVL10659.1\|3855996_3856293_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AVL10660.1\|3856294_3856591_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
AVL10661.1\|3856799_3857132_-	DUF1508 domain-containing protein	NA	NA	NA	NA
AVL10662.1\|3857322_3858045_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.4e-30	33.2
AVL10663.1\|3858041_3859445_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.0e-32	29.0

DBSCAN-SWA_7

3906127 : 3913283

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL10696.1\|3906127_3907522_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.4e-18	31.5
AVL10697.1\|3907696_3908590_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	1.0e-46	42.0
AVL10698.1\|3908626_3908890_-	hypothetical protein	NA	NA	NA	NA
AVL10699.1\|3908961_3910047_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.7e-102	54.5
AVL10700.1\|3910046_3910946_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.7e-28	34.8
AVL10701.1\|3911003_3911882_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.1e-106	64.1
AVL10702.1\|3911886_3912423_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	63.8
AVL10703.1\|3912446_3913283_+	polysaccharide pyruvyl transferase family protein	A0A1V0SAR6	Catovirus	9.1e-21	32.0

DBSCAN-SWA_8

4359058 : 4415291

Enterobacteria_phage(34.62%)

portal,capsid,head,tail,lysis,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL11127.1\|4359058_4361485_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.0
AVL11128.1\|4361683_4361989_-	DUF1161 domain-containing protein	NA	NA	NA	NA
AVL11850.1\|4362096_4362807_+	YnfC family lipoprotein	NA	NA	NA	NA
AVL11129.1\|4362809_4363370_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
AVL11130.1\|4363404_4363746_-	hypothetical protein	NA	NA	NA	NA
AVL11131.1\|4363880_4364207_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AVL11132.1\|4364243_4364432_+	hypothetical protein	NA	NA	NA	NA
AVL11133.1\|4364412_4365627_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AVL11134.1\|4365638_4366658_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	7.4e-17	26.2
AVL11135.1\|4366715_4366826_+	transporter	NA	NA	NA	NA
AVL11136.1\|4366845_4368141_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	2.2e-154	61.8
AVL11137.1\|4368160_4368412_-	DNA-binding protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AVL11138.1\|4368484_4370956_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
AVL11139.1\|4371048_4371240_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AVL11140.1\|4371236_4371425_-	division inhibition protein DicB	NA	NA	NA	NA
AVL11141.1\|4371911_4372529_-	hypothetical protein	NA	NA	NA	NA
AVL11142.1\|4372488_4372644_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	8.8e-07	51.1
AVL11143.1\|4372836_4373295_-	transcriptional regulator	I6PD69	Cronobacter_phage	2.8e-24	46.2
AVL11144.1\|4373321_4373549_+	transcriptional regulator	NA	NA	NA	NA
AVL11145.1\|4373532_4374054_+	hypothetical protein	NA	NA	NA	NA
AVL11146.1\|4373980_4375000_+	hypothetical protein	U5P0A0	Shigella_phage	1.8e-55	61.2
AVL11147.1\|4375040_4375463_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	1.3e-63	91.3
AVL11148.1\|4375459_4375816_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-38	69.6
AVL11149.1\|4376968_4377148_+	hypothetical protein	NA	NA	NA	NA
AVL11150.1\|4377122_4377305_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	6.3e-12	74.5
AVL11151.1\|4377482_4378796_+\|transposase	transposase	NA	NA	NA	NA
AVL11152.1\|4378840_4378963_+	plasmid mobilization protein	NA	NA	NA	NA
AVL11153.1\|4379232_4379565_-	protein FlxA	NA	NA	NA	NA
AVL11154.1\|4379767_4380073_-	hypothetical protein	NA	NA	NA	NA
AVL11155.1\|4380097_4380337_+	antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
AVL11156.1\|4380336_4380624_+	mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
AVL11157.1\|4380695_4380851_+	protein HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
AVL11158.1\|4381067_4381319_+	hypothetical protein	NA	NA	NA	NA
AVL11159.1\|4381385_4381664_+	hypothetical protein	NA	NA	NA	NA
AVL11160.1\|4381665_4382715_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
AVL11161.1\|4382728_4383115_+	antitermination protein	Q8SBE4	Shigella_phage	1.3e-62	94.5
AVL11162.1\|4383146_4384359_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-100	57.1
AVL11163.1\|4385163_4385376_-	cold-shock protein CspF	NA	NA	NA	NA
AVL11164.1\|4385676_4385892_+	cold-shock protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
AVL11165.1\|4386645_4386861_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AVL11166.1\|4386865_4387177_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AVL11167.1\|4387173_4387707_+	lysozyme from lambdoid prophage Qin	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AVL11168.1\|4387703_4388201_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
AVL11169.1\|4388564_4388777_+	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AVL11170.1\|4388787_4388976_+	cold-shock protein	NA	NA	NA	NA
AVL11171.1\|4389006_4389279_+	hypothetical protein	NA	NA	NA	NA
AVL11172.1\|4389450_4389624_+	protein GnsB	NA	NA	NA	NA
AVL11173.1\|4389775_4390186_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
AVL11174.1\|4390243_4390477_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
AVL11175.1\|4390582_4390726_+	DNA-packaging protein	NA	NA	NA	NA
AVL11176.1\|4390865_4391411_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
AVL11177.1\|4391385_4393311_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
AVL11178.1\|4393307_4393514_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AVL11179.1\|4393510_4395112_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.1e-309	99.2
AVL11180.1\|4395092_4396412_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	5.6e-235	99.1
AVL11181.1\|4396421_4396754_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.5e-54	98.2
AVL11182.1\|4396809_4397835_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	2.8e-189	98.2
AVL11183.1\|4397876_4398272_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.1e-58	95.5
AVL11184.1\|4398283_4398637_+\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	6.4e-61	97.4
AVL11185.1\|4398648_4399227_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
AVL11186.1\|4399223_4399619_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
AVL11851.1\|4399626_4400367_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	5.2e-129	97.2
AVL11187.1\|4400382_4400805_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	97.1
AVL11188.1\|4400786_4401221_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
AVL11189.1\|4401213_4403793_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	95.1
AVL11190.1\|4403789_4404119_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.8e-58	99.1
AVL11191.1\|4404118_4404817_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.6e-133	99.1
AVL11192.1\|4404822_4405566_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
AVL11193.1\|4405463_4406135_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.1e-104	99.6
AVL11194.1\|4406195_4409675_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.6
AVL11195.1\|4409742_4410342_+	Ail/Lom family protein	H6WZM8	Escherichia_phage	2.5e-105	94.0
AVL11852.1\|4410406_4413478_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	1.9e-68	82.1
AVL11196.1\|4413477_4414053_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
AVL11197.1\|4414150_4414741_-	DNA invertase	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
AVL11198.1\|4415057_4415291_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3

DBSCAN-SWA_9

4623395 : 4674681

Escherichia_phage(74.55%)

plate,tail,holin,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL11367.1\|4623395_4623941_-\|tail	phage tail protein	Q8W612	Enterobacteria_phage	5.4e-75	75.8
AVL11368.1\|4623943_4625497_-\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	1.2e-223	77.7
AVL11369.1\|4625493_4626120_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	2.2e-120	99.0
AVL11370.1\|4626103_4627330_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.7e-225	98.5
AVL11371.1\|4627370_4628531_-	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	2.2e-33	30.3
AVL11372.1\|4628680_4629028_-	hypothetical protein	A0A0U2I1S2	Escherichia_phage	2.2e-61	97.4
AVL11373.1\|4629310_4630024_-\|plate	phage baseplate protein	A0A0U2JTX5	Escherichia_phage	4.1e-123	94.5
AVL11374.1\|4630023_4631031_-	hypothetical protein	A0A0U2QL72	Escherichia_phage	4.0e-180	90.7
AVL11375.1\|4631030_4631297_-	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	9.8e-46	100.0
AVL11376.1\|4631293_4631962_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	4.0e-120	97.3
AVL11377.1\|4631965_4634041_-	hypothetical protein	A0A0U2QV45	Escherichia_phage	2.8e-127	42.7
AVL11378.1\|4634105_4634723_-	hypothetical protein	A0A0U2S634	Escherichia_phage	3.6e-83	75.5
AVL11379.1\|4634719_4635151_-	hypothetical protein	A0A0U2S616	Escherichia_phage	3.3e-75	100.0
AVL11380.1\|4635174_4636512_-	hypothetical protein	A0A0U2KD19	Escherichia_phage	5.7e-243	96.2
AVL11381.1\|4636511_4637456_-	hypothetical protein	A0A0U2SH76	Escherichia_phage	1.3e-172	99.7
AVL11382.1\|4637442_4637883_-	hypothetical protein	A0A0U2RTA8	Escherichia_phage	1.6e-80	97.3
AVL11383.1\|4637879_4638320_-	hypothetical protein	A0A0U2S646	Escherichia_phage	1.2e-77	99.3
AVL11384.1\|4638319_4638790_-	hypothetical protein	A0A0U2SAX6	Escherichia_phage	2.5e-84	100.0
AVL11385.1\|4638847_4639876_-	hypothetical protein	A0A0U2QQI2	Escherichia_phage	9.6e-190	99.4
AVL11386.1\|4639890_4640508_-	hypothetical protein	A0A0U2S600	Escherichia_phage	5.9e-118	100.0
AVL11387.1\|4640500_4641823_-	DUF2213 domain-containing protein	A0A0U2QW61	Escherichia_phage	6.8e-188	95.2
AVL11862.1\|4641803_4642523_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	3.6e-135	98.3
AVL11388.1\|4642581_4644018_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.3e-266	96.4
AVL11389.1\|4644035_4645364_-\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	1.9e-262	98.6
AVL11390.1\|4645353_4646445_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	9.6e-148	92.2
AVL11391.1\|4646448_4646658_-	hypothetical protein	NA	NA	NA	NA
AVL11392.1\|4646635_4647568_-	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	5.4e-83	54.9
AVL11393.1\|4647560_4648349_-	transcriptional regulator	A0A2P1CCG3	Lactobacillus_phage	5.9e-46	41.9
AVL11394.1\|4648472_4648769_-	hypothetical protein	Q8W634	Enterobacteria_phage	9.5e-50	96.9
AVL11395.1\|4648907_4649099_-	hypothetical protein	NA	NA	NA	NA
AVL11396.1\|4649140_4649518_-	peptidase M15	Q9MBZ3	Enterobacteria_phage	2.3e-64	97.6
AVL11397.1\|4649520_4649796_-\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	8.6e-45	98.9
AVL11398.1\|4649785_4650178_-\|holin	holin	Q9MBZ5	Enterobacteria_phage	2.6e-55	96.9
AVL11399.1\|4650176_4650374_+	hypothetical protein	NA	NA	NA	NA
AVL11400.1\|4650353_4651097_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVL11401.1\|4651326_4651869_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	6.0e-74	72.9
AVL11402.1\|4651865_4652156_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-47	89.6
AVL11403.1\|4652155_4652755_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	7.7e-107	92.5
AVL11404.1\|4653221_4653374_-	type I toxin-antitoxin system hok family toxin	A0A0U2QV81	Escherichia_phage	9.6e-14	81.6
AVL11405.1\|4655373_4656414_+	DNA (cytosine-5-)-methyltransferase	A0A0R6PG08	Moraxella_phage	3.8e-61	38.8
AVL11406.1\|4656446_4656878_-	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	1.6e-61	88.4
AVL11407.1\|4656893_4657655_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.8e-119	89.3
AVL11408.1\|4657688_4658354_-	replication protein	A0A0U2JGJ0	Escherichia_phage	3.5e-84	96.7
AVL11409.1\|4658352_4658736_+	hypothetical protein	NA	NA	NA	NA
AVL11410.1\|4659346_4659598_+	hypothetical protein	NA	NA	NA	NA
AVL11411.1\|4659598_4659895_-	hypothetical protein	NA	NA	NA	NA
AVL11412.1\|4659907_4660330_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.7e-68	93.6
AVL11413.1\|4660352_4660649_-	transcriptional regulator	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
AVL11414.1\|4660772_4661249_+	Rac prophage repressor	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	52.1
AVL11415.1\|4661511_4661691_+	hypothetical protein	NA	NA	NA	NA
AVL11416.1\|4661701_4661854_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.5e-08	55.3
AVL11417.1\|4662274_4662496_+	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	8.1e-38	98.6
AVL11863.1\|4662495_4662666_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	6.7e-24	91.1
AVL11418.1\|4662740_4663016_+	hypothetical protein	A0A0U2QW85	Escherichia_phage	2.5e-44	98.9
AVL11419.1\|4663117_4666189_+	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	84.0
AVL11420.1\|4666200_4667253_+	enterohemolysin	A0A0U2S5Y9	Escherichia_phage	8.5e-117	63.6
AVL11421.1\|4667316_4667511_+	restriction alleviation protein, Lar family	A0A0U2QQP4	Escherichia_phage	9.0e-33	100.0
AVL11422.1\|4667503_4667692_+	hypothetical protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
AVL11423.1\|4667791_4668007_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
AVL11424.1\|4668008_4669244_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	3.0e-238	98.3
AVL11425.1\|4669295_4670231_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.8e-148	100.0
AVL11426.1\|4670359_4671733_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
AVL11427.1\|4671762_4671936_-	hypothetical protein	NA	NA	NA	NA
AVL11428.1\|4672210_4673194_-	zinc transporter ZntB	NA	NA	NA	NA
AVL11864.1\|4673448_4674681_+	PAS domain S-box protein	A0A127AWB9	Bacillus_phage	3.1e-17	39.5

DBSCAN-SWA_10

4867926 : 4912295

Enterobacteria_phage(46.15%)

head,tail,holin,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL11619.1\|4867926_4869033_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AVL11876.1\|4869068_4869710_+	lysogenization protein HflD	NA	NA	NA	NA
AVL11620.1\|4869713_4871084_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
AVL11621.1\|4871251_4871923_+	two-component system response regulator PhoP	NA	NA	NA	NA
AVL11622.1\|4871922_4873383_+	sensor protein PhoQ	NA	NA	NA	NA
AVL11623.1\|4873458_4874580_+	50S ribosomal protein L16 arginine hydroxylase	NA	NA	NA	NA
AVL11624.1\|4874725_4875955_-	peptidase T	NA	NA	NA	NA
AVL11877.1\|4876010_4876226_+	hypothetical protein	NA	NA	NA	NA
AVL11625.1\|4876204_4877341_+	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
AVL11626.1\|4877324_4878188_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
AVL11878.1\|4878420_4879134_-	hypothetical protein	A0A0A7NPW9	Enterobacteria_phage	1.3e-79	99.3
AVL11627.1\|4879172_4879361_-	hypothetical protein	NA	NA	NA	NA
AVL11628.1\|4879537_4880119_-	hypothetical protein	Q8W653	Enterobacteria_phage	1.1e-110	95.9
AVL11629.1\|4880115_4880304_-	hypothetical protein	Q8W652	Enterobacteria_phage	1.3e-28	98.4
AVL11630.1\|4880500_4880707_-	hypothetical protein	Q8W651	Enterobacteria_phage	9.0e-31	97.1
AVL11631.1\|4880862_4881324_-	XRE family transcriptional regulator	A0A1B5FPB8	Escherichia_phage	1.5e-41	67.2
AVL11632.1\|4881469_4882159_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.6e-118	89.5
AVL11633.1\|4882292_4882565_+	Cro/Cl family transcriptional regulator	A0A1B5FPK9	Escherichia_phage	1.6e-35	89.7
AVL11634.1\|4882686_4882914_-	hypothetical protein	NA	NA	NA	NA
AVL11635.1\|4883398_4883710_+	hypothetical protein	NA	NA	NA	NA
AVL11879.1\|4883709_4884417_+	DNA-binding protein	Q8W645	Enterobacteria_phage	2.2e-100	79.5
AVL11636.1\|4884436_4884613_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.2e-22	83.9
AVL11637.1\|4884631_4884940_-	XRE family transcriptional regulator	A0A088CD40	Shigella_phage	3.1e-43	89.2
AVL11638.1\|4884929_4885259_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.5e-40	90.8
AVL11639.1\|4885283_4885943_+	hypothetical protein	Q8W643	Enterobacteria_phage	2.4e-77	70.4
AVL11640.1\|4885939_4886164_+	hypothetical protein	NA	NA	NA	NA
AVL11641.1\|4886160_4887087_+	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	5.8e-162	97.1
AVL11642.1\|4887097_4887976_+	AAA family ATPase	Q8W641	Enterobacteria_phage	1.2e-140	96.4
AVL11643.1\|4887972_4889364_+	replicative DNA helicase	Q8W640	Enterobacteria_phage	1.7e-261	98.1
AVL11880.1\|4889375_4889618_+	hypothetical protein	Q8W639	Enterobacteria_phage	2.1e-34	97.5
AVL11644.1\|4889617_4890001_+	antitermination protein	A0A088CD47	Shigella_phage	1.2e-52	77.0
AVL11645.1\|4890181_4891285_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.3e-152	75.9
AVL11646.1\|4891794_4891992_+	TrmB family transcriptional regulator	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
AVL11647.1\|4892142_4893189_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	8.8e-191	92.4
AVL11648.1\|4893385_4893607_-	hypothetical protein	NA	NA	NA	NA
AVL11649.1\|4893869_4894361_+	hypothetical protein	NA	NA	NA	NA
AVL11881.1\|4894558_4894984_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.5e-59	86.5
AVL11650.1\|4894980_4895133_+	DUF3927 domain-containing protein	S4TRP5	Salmonella_phage	1.6e-05	63.4
AVL11651.1\|4895220_4895610_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	7.1e-45	83.8
AVL11652.1\|4895599_4895878_+\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	7.3e-36	85.9
AVL11653.1\|4895879_4896425_+	hypothetical protein	A0A0U2S643	Escherichia_phage	5.2e-94	87.3
AVL11654.1\|4896552_4896768_+	hypothetical protein	NA	NA	NA	NA
AVL11655.1\|4897194_4897404_+	hypothetical protein	A0A1L6Z528	Klebsiella_phage	5.4e-15	60.0
AVL11656.1\|4897527_4897743_+	hypothetical protein	NA	NA	NA	NA
AVL11657.1\|4897743_4897968_-	hypothetical protein	NA	NA	NA	NA
AVL11658.1\|4897952_4898141_+	hypothetical protein	NA	NA	NA	NA
AVL11659.1\|4898377_4898926_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	7.2e-59	86.3
AVL11660.1\|4900814_4901024_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.0e-10	49.2
AVL11661.1\|4902578_4904195_+	peptidase S49 family protein	A0A0K2FI53	Enterobacteria_phage	3.8e-100	52.8
AVL11662.1\|4904235_4904571_+\|head	head decoration protein	A0A0K2FIF9	Escherichia_phage	4.0e-20	49.1
AVL11663.1\|4906108_4906483_+\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	3.1e-29	59.8
AVL11664.1\|4906469_4907048_+\|tail	phage tail protein	A0A291AWZ0	Escherichia_phage	1.1e-89	88.9
AVL11665.1\|4907044_4907446_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	6.6e-62	83.5
AVL11666.1\|4907456_4908197_+\|tail	phage tail protein	K7PGT7	Enterobacteria_phage	2.4e-110	85.7
AVL11667.1\|4908945_4909407_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	7.2e-20	47.1
AVL11668.1\|4911965_4912295_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	4.9e-47	82.4

DBSCAN-SWA_11

4917805 : 4926306

Enterobacteria_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL11669.1\|4917805_4918426_+	hypothetical protein	A0A1U8QHD6	Enterobacteria_phage	5.3e-111	99.5
AVL11670.1\|4918447_4920814_+	short-chain dehydrogenase	A0A0K2FIZ6	Escherichia_phage	4.4e-214	99.5
AVL11671.1\|4921396_4921768_+	hypothetical protein	Q8W655	Enterobacteria_phage	1.2e-62	96.7
AVL11672.1\|4921799_4922042_+	DUF4222 domain-containing protein	Q8W656	Enterobacteria_phage	8.3e-36	95.0
AVL11673.1\|4922045_4922192_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.7e-21	89.6
AVL11674.1\|4922199_4922454_+	excisionase	Q859D3	Escherichia_coli_phage	3.6e-37	86.9
AVL11675.1\|4922487_4923774_+	DUF3596 domain-containing protein	H6WZF6	Escherichia_phage	4.8e-247	96.3
AVL11676.1\|4923794_4924496_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	3.0e-102	99.5
AVL11677.1\|4924555_4924663_+	hypothetical protein	NA	NA	NA	NA
AVL11678.1\|4924643_4925375_-	osmoprotectant uptake system permease	NA	NA	NA	NA
AVL11679.1\|4925379_4926306_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027255

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection