CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027539	Serratia marcescens strain AR_0099 chromosome, complete genome	0 crisprs	cas14j,cas3,WYL,DEDDh,csa3,RT,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1697688 : 1735794

Erwinia_phage(46.15%)

head,capsid,tail,tRNA,integrase,plate,portal

attL 1697566:1697617|attR 1729565:1729616

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1697566:1697617	attL	NA	NA	NA	NA
AVN49673.1\|1697688_1698732_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.0e-178	87.0
AVN49674.1\|1698731_1699310_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	9.9e-59	55.3
AVN49675.1\|1699441_1699705_+	hypothetical protein	A0A218M4I5	Erwinia_phage	4.8e-37	85.1
AVN49676.1\|1699736_1700246_+	hypothetical protein	A0A1S6L008	Salmonella_phage	5.5e-45	53.6
AVN52920.1\|1700256_1700436_+	hypothetical protein	F1BUS5	Erwinia_phage	1.1e-05	51.0
AVN49677.1\|1700447_1700750_+	hypothetical protein	NA	NA	NA	NA
AVN49678.1\|1700814_1701108_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	6.4e-06	54.4
AVN49679.1\|1701107_1701332_+	hypothetical protein	Q6K1F5	Salmonella_virus	3.7e-14	56.9
AVN49680.1\|1701454_1701736_+	hypothetical protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
AVN49681.1\|1701725_1702151_+	hypothetical protein	NA	NA	NA	NA
AVN49682.1\|1702147_1704361_+	replication endonuclease	S4TTC1	Salmonella_phage	4.7e-242	58.9
AVN52921.1\|1704401_1704632_+	hypothetical protein	NA	NA	NA	NA
AVN49683.1\|1704646_1704877_+	hypothetical protein	NA	NA	NA	NA
AVN52922.1\|1704973_1705873_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVN49684.1\|1706001_1706574_+	flavin reductase	NA	NA	NA	NA
AVN49685.1\|1707098_1707353_+	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	5.9e-16	47.6
AVN52923.1\|1707352_1707694_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
AVN49686.1\|1707738_1708773_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	3.2e-161	79.5
AVN49687.1\|1708772_1710545_-	oxidoreductase	F1BUR2	Erwinia_phage	4.4e-291	82.0
AVN49688.1\|1710687_1711503_+\|capsid	phage capsid protein	S4TP53	Salmonella_phage	2.7e-70	53.1
AVN49689.1\|1711545_1712757_+\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	7.9e-159	78.5
AVN49690.1\|1712759_1713419_+	hypothetical protein	F1BUQ7	Erwinia_phage	5.2e-80	69.4
AVN49691.1\|1713512_1714001_+\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	1.1e-39	54.3
AVN49692.1\|1714000_1714204_+\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	2.4e-20	68.7
AVN49693.1\|1714208_1714418_+	hypothetical protein	A0A218M4L5	Erwinia_phage	2.0e-09	43.5
AVN49694.1\|1714401_1714914_+	lysozyme	A0A218M4K3	Erwinia_phage	5.7e-58	66.5
AVN49695.1\|1714910_1715339_+	LysB family transcriptional regulator	F1BUQ1	Erwinia_phage	5.5e-14	36.6
AVN49696.1\|1715434_1715908_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.4e-49	61.8
AVN49697.1\|1715894_1716341_+	phage virion morphogenesis protein	O80313	Escherichia_phage	4.6e-40	58.4
AVN49698.1\|1716413_1717043_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	6.3e-75	72.8
AVN49699.1\|1717190_1717541_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.2e-37	67.2
AVN49700.1\|1717545_1718454_+\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	8.1e-108	68.2
AVN49701.1\|1718446_1718980_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	5.7e-77	76.0
AVN49702.1\|1718986_1721608_+	hypothetical protein	Q858V4	Yersinia_virus	3.7e-60	54.1
AVN49703.1\|1721609_1722155_+\|tail	tail fiber assembly protein	A0A222YWC2	Escherichia_phage	2.0e-37	46.4
AVN49704.1\|1722431_1723601_+\|tail	phage tail protein	F1BUU3	Erwinia_phage	3.1e-184	81.7
AVN49705.1\|1723616_1724126_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
AVN49706.1\|1724180_1724462_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.3e-26	69.0
AVN49707.1\|1724494_1724617_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	1.5e-09	72.5
AVN49708.1\|1724609_1727456_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	7.9e-109	51.2
AVN49709.1\|1727460_1727946_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.5e-47	65.7
AVN49710.1\|1727942_1729091_+	hypothetical protein	A0A218M4J7	Erwinia_phage	1.9e-125	63.4
AVN49711.1\|1729181_1729412_+	transcriptional regulator	Q37973	Salmonella_virus	3.2e-21	64.5
AVN49712.1\|1729792_1730281_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
1729565:1729616	attR	NA	NA	NA	NA
AVN49713.1\|1730355_1732197_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
AVN49714.1\|1732354_1734103_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-74	38.8
AVN49715.1\|1734239_1734455_-	30S ribosomal protein S21	NA	NA	NA	NA
AVN49716.1\|1734780_1735794_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.3e-110	59.5

DBSCAN-SWA_2

2344381 : 2391238

Escherichia_phage(23.26%)

integrase,tail,terminase,holin

attL 2343468:2343483|attR 2396303:2396318

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2343468:2343483	attL	NA	NA	NA	NA
AVN50222.1\|2344381_2345845_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.5
AVN50223.1\|2345947_2347525_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
AVN50224.1\|2347749_2348952_+\|integrase	integrase	T1S9J3	Salmonella_phage	4.8e-156	69.3
AVN50225.1\|2348955_2349240_-	hypothetical protein	NA	NA	NA	NA
AVN50226.1\|2349236_2349899_-	DNA methyltransferase	A0A248SKY3	Klebsiella_phage	1.6e-81	65.0
AVN50227.1\|2350016_2350268_-	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	9.3e-14	48.8
AVN50228.1\|2350308_2351187_-	recombinase RecT	G9L6A2	Escherichia_phage	5.2e-120	74.4
AVN50229.1\|2351183_2352005_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.1e-127	79.4
AVN50230.1\|2352004_2352310_-	hypothetical protein	NA	NA	NA	NA
AVN50231.1\|2352317_2353364_-	hypothetical protein	M9P0E1	Enterobacteria_phage	5.1e-37	59.5
AVN50232.1\|2353360_2353513_-	DUF2985 domain-containing protein	T1SA20	Salmonella_phage	1.6e-05	50.0
AVN50233.1\|2353787_2354384_-	XRE family transcriptional regulator	G9L6A6	Escherichia_phage	9.5e-49	51.8
AVN50234.1\|2354532_2354751_+	hypothetical protein	Q858D6	Salmonella_phage	1.5e-15	58.0
AVN50235.1\|2354895_2355090_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.2e-13	56.7
AVN50236.1\|2355089_2356040_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	4.1e-78	59.7
AVN50237.1\|2355945_2356512_+	replication protein	A0A0U2JGJ0	Escherichia_phage	9.4e-22	37.8
AVN52960.1\|2356775_2357075_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	7.1e-37	72.7
AVN50238.1\|2357077_2357290_+	conjugal transfer protein TraR	Q9ZXI6	Pseudomonas_virus	4.0e-10	50.8
AVN50239.1\|2357300_2357783_+	hypothetical protein	NA	NA	NA	NA
AVN50240.1\|2357779_2358442_+	hypothetical protein	R9VWB9	Serratia_phage	2.6e-71	61.1
AVN50241.1\|2358431_2358617_+	restriction alleviation protein, Lar family	A0A0U2QQP4	Escherichia_phage	1.2e-15	66.0
AVN50242.1\|2358613_2358889_+	hypothetical protein	S4TW48	Salmonella_phage	7.3e-20	61.4
AVN50243.1\|2358878_2359343_+	hypothetical protein	NA	NA	NA	NA
AVN50244.1\|2359339_2359867_+	hypothetical protein	A0A248SKW5	Klebsiella_phage	5.9e-10	56.9
AVN50245.1\|2359859_2360246_+	hypothetical protein	H9C172	Pectobacterium_phage	3.0e-11	33.0
AVN50246.1\|2360317_2360575_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.6e-16	51.8
AVN50247.1\|2360681_2361230_+\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	1.4e-59	66.9
AVN50248.1\|2361226_2362699_+\|terminase	terminase	G9L6B8	Escherichia_phage	1.7e-235	78.3
AVN50249.1\|2363591_2363795_+	hypothetical protein	NA	NA	NA	NA
AVN50250.1\|2363797_2365483_+\|tail	phage tail protein	T1S9Z7	Salmonella_phage	1.4e-185	58.5
AVN52961.1\|2365482_2365779_+	hypothetical protein	Q2A090	Sodalis_phage	7.1e-29	72.9
AVN50251.1\|2365744_2366008_+	hypothetical protein	V5KSC6	Escherichia_phage	2.0e-11	64.2
AVN50252.1\|2366018_2366699_+	peptidase	G9L6C4	Escherichia_phage	1.4e-51	70.1
AVN50253.1\|2366704_2367691_+	hypothetical protein	G9L6C5	Escherichia_phage	1.1e-139	71.6
AVN50254.1\|2367744_2368191_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.1e-33	59.9
AVN52962.1\|2368201_2368486_+	hypothetical protein	NA	NA	NA	NA
AVN50255.1\|2368525_2368849_+	hypothetical protein	T1SBJ0	Salmonella_phage	2.7e-21	54.9
AVN50256.1\|2368848_2369457_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	7.7e-62	61.4
AVN50257.1\|2369456_2371958_+	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	1.6e-307	61.3
AVN50258.1\|2371957_2372431_+	hypothetical protein	Q858G2	Salmonella_phage	1.1e-52	66.0
AVN50259.1\|2372423_2372993_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	1.9e-30	49.7
AVN52963.1\|2373002_2375759_+	hypothetical protein	Q858G0	Salmonella_phage	1.9e-99	34.6
AVN50260.1\|2375758_2379148_+	hypothetical protein	A0A1E1GEP2	Vibrio_phage	2.2e-182	36.3
AVN50261.1\|2379148_2379577_-	hypothetical protein	NA	NA	NA	NA
AVN50262.1\|2379601_2380036_+	hypothetical protein	NA	NA	NA	NA
AVN50263.1\|2381981_2382521_+	hypothetical protein	K7PKJ4	Enterobacteria_phage	7.3e-32	41.0
AVN50264.1\|2382909_2383224_-	hypothetical protein	NA	NA	NA	NA
AVN50265.1\|2383325_2383574_-	hypothetical protein	NA	NA	NA	NA
AVN50266.1\|2383760_2386361_+	hypothetical protein	G9L6E4	Escherichia_phage	3.0e-54	36.5
AVN50267.1\|2386392_2386626_+\|holin	holin	H9C183	Pectobacterium_phage	1.2e-20	69.6
AVN50268.1\|2386609_2387125_+	glycoside hydrolase	I6PBN2	Cronobacter_phage	9.7e-50	66.0
AVN50269.1\|2387109_2387484_+	hypothetical protein	A0A248XD11	Klebsiella_phage	3.1e-13	48.4
AVN50270.1\|2387480_2387741_+	hypothetical protein	A0A248XCT8	Klebsiella_phage	1.5e-14	58.6
AVN50271.1\|2388123_2388486_-	transcriptional regulator	NA	NA	NA	NA
AVN50272.1\|2388608_2389442_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
AVN50273.1\|2389456_2391238_-	hybrid sensor histidine kinase/response regulator	A0A2K9L0Z8	Tupanvirus	3.5e-14	23.7
2396303:2396318	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3034322 : 3070570

Salmonella_phage(38.89%)

capsid,lysis,tail,integrase,plate,portal

attL 3034606:3034645|attR 3070687:3070726

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN50825.1\|3034322_3034535_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	9.9e-25	77.1
3034606:3034645	attL	NA	NA	NA	NA
AVN50826.1\|3034726_3034948_-	transcriptional regulator	Q53ZE7	Salmonella_virus	4.3e-23	66.7
AVN50827.1\|3035255_3036065_+	chaperonin	A0A0F7L9X0	Escherichia_phage	1.4e-138	83.6
AVN50828.1\|3036212_3037304_-	late control protein D	E5G6Q3	Salmonella_phage	4.1e-114	58.6
AVN50829.1\|3037300_3037765_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.0e-49	61.9
AVN52995.1\|3037776_3040695_-\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	1.1e-158	53.3
AVN52996.1\|3040687_3040825_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	5.8e-10	73.7
AVN50830.1\|3040821_3041148_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	5.1e-20	56.8
AVN50831.1\|3041219_3041735_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.0e-58	66.3
AVN50832.1\|3041745_3042918_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	4.2e-181	80.4
AVN50833.1\|3043111_3044203_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	4.8e-30	44.8
AVN50834.1\|3044212_3045124_-	hypothetical protein	NA	NA	NA	NA
AVN50835.1\|3045120_3047457_-	hypothetical protein	A0A2D1GNM3	Pseudomonas_phage	6.6e-37	25.8
AVN50836.1\|3047449_3048061_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.2e-60	61.8
AVN50837.1\|3048053_3048962_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	4.8e-108	68.5
AVN50838.1\|3048961_3049309_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	5.2e-31	57.3
AVN50839.1\|3049305_3049944_-\|plate	phage baseplate assembly protein V	S4TUB5	Salmonella_phage	8.3e-59	58.3
AVN50840.1\|3050025_3050481_-	phage virion morphogenesis protein	A0A077K9X5	Ralstonia_phage	6.4e-29	47.6
AVN50841.1\|3050468_3050936_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.9e-37	51.0
AVN50842.1\|3050944_3051382_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	1.8e-20	46.6
AVN50843.1\|3051378_3051858_-	lysozyme	I6S1V9	Salmonella_phage	2.2e-51	58.8
AVN50844.1\|3051857_3052124_-\|lysis	lysis protein	NA	NA	NA	NA
AVN50845.1\|3052145_3052349_-\|tail	phage tail protein	F1BUQ5	Erwinia_phage	3.3e-17	55.2
AVN50846.1\|3052348_3052870_-	hypothetical protein	A0A1S6KZW8	Salmonella_phage	5.8e-34	49.0
AVN50847.1\|3052961_3053618_-	hypothetical protein	F1BUQ7	Erwinia_phage	4.0e-40	46.9
AVN50848.1\|3053621_3054716_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.2e-121	62.3
AVN50849.1\|3054776_3055577_-\|capsid	GPO family capsid scaffolding protein	A0A1J0I2E9	Salmonella_phage	2.6e-49	45.6
AVN50850.1\|3055764_3057534_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	3.5e-232	65.8
AVN50851.1\|3057534_3058569_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.6e-136	68.6
AVN50852.1\|3059242_3060421_-	hypothetical protein	NA	NA	NA	NA
AVN50853.1\|3060529_3060874_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	2.5e-17	42.2
AVN50854.1\|3060875_3063476_-	replication protein	F1BUS0	Erwinia_phage	4.7e-225	60.5
AVN52997.1\|3063472_3064483_-	hypothetical protein	B7SYG0	Stenotrophomonas_phage	3.0e-63	42.0
AVN50855.1\|3064524_3065154_-	hypothetical protein	A0A088FQU9	Escherichia_phage	3.5e-09	59.2
AVN50856.1\|3065146_3065971_-	adenine methylase	A0A0M4QWR0	Salmonella_phage	8.5e-64	46.6
AVN50857.1\|3065967_3066819_-	hypothetical protein	A0A1D9C9N8	Salinivibrio_phage	2.6e-55	59.8
AVN50858.1\|3066822_3067041_-	hypothetical protein	A0A0M3LQ09	Mannheimia_phage	1.5e-07	38.9
AVN50859.1\|3067187_3067385_-	hypothetical protein	NA	NA	NA	NA
AVN50860.1\|3067671_3067944_-	hypothetical protein	NA	NA	NA	NA
AVN50861.1\|3067940_3068141_-	hypothetical protein	NA	NA	NA	NA
AVN50862.1\|3068155_3068356_-	hypothetical protein	NA	NA	NA	NA
AVN50863.1\|3068604_3068904_+	XRE family transcriptional regulator	Q1JS45	Enterobacteria_phage	1.8e-19	45.2
AVN50864.1\|3068990_3069554_+	hypothetical protein	NA	NA	NA	NA
AVN50865.1\|3069556_3070570_+\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	2.6e-86	48.3
3070687:3070726	attR	NA	NA	NA	NA

DBSCAN-SWA_4

5273384 : 5282088

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN52831.1\|5273384_5275718_-	DNA primase	Q7M2A8	Enterobacteria_phage	3.6e-261	60.0
AVN52832.1\|5275728_5276064_-	hypothetical protein	NA	NA	NA	NA
AVN52833.1\|5276060_5276324_-	hypothetical protein	NA	NA	NA	NA
AVN52834.1\|5276320_5276866_-	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	7.7e-21	55.4
AVN52835.1\|5276871_5277117_-	hypothetical protein	NA	NA	NA	NA
AVN52836.1\|5277113_5277377_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.5e-17	55.0
AVN52837.1\|5278112_5279303_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	2.8e-140	61.1
AVN52838.1\|5279721_5280981_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.6e-98	48.6
AVN52839.1\|5280984_5282088_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.6e-60	43.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage