CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP021262	Legionella pneumophila subsp. pascullei strain U8W (D-7160) chromosome, complete genome	1 crisprs	NA	0	8	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP021262_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP021262_1

513744-514255

Orphan

Consensus_repeat	Method
GCAAAAGATCTAAAAGACGCTGGTTTTTCTGC	CRISPRCasFinder

8 spacers

The CRISPR arrays of CP021262_1

>merge|CP021262|1|513744-514255|CRISPRCasFinder
GCAAAAGAGCTGAAAGATGCCGGGTTTACTGCAGCTGAGTTAAAAGCGGCCGGTTTTAGTGCTAAAGACTTAAAAGACGCCGGTTTTACAGCAAAGGAATTGCGTGATGCGGGATTCTCCGCTCAGGAATTAAAAGATGCTGGTTTTAGCGCAAAAGATCTAAAAGACGCTGGTTTTTCTGCTGCAGAATTAAAAGCAGCTGGATTTACAGCAGCACAGCTCAAGGCCGCTGGGTTTTCTGCAAAAGATCTAAAAGATGCTGGTTTTTCTGCCGCAGAGTTAAAAGCAGCAGGATTTGACGCAAAAGAATTGAAAGATGCTGGTTTTTCTGCTGCAGAATTAAAAGCAGCCGGATTTAGCGCAAAAGAATTGAAAGATGCTGGTTTTAGTGCCTCGGATTTGAAAAACGCAGGGTTTAGTGCCTCAGAATTAAAGAATGCTGGATATTCTGCCGACGAGCTAAAAAAAGCAGGATATACCTCAGCTGAACTGAGAAATGCTGGTTTTTCTCC

>CP021262|1|1|513744-514255|CRISPRCasFinder
GCAAAAGAGCTGAAAGATGCCGGGTTTACTGC	AGCTGAGTTAAAAGCGGCCGGTTTTAGT
GCTAAAGACTTAAAAGACGCCGGTTTTACAGC	AAAGGAATTGCGTGATGCGGGATTCTCC
GCTCAGGAATTAAAAGATGCTGGTTTTAGCGC	AAAAGATCTAAAAGACGCTGGTTTTTCT
GCTGCAGAATTAAAAGCAGCTGGATTTACAGC	AGCACAGCTCAAGGCCGCTGGGTTTTCT
GCAAAAGATCTAAAAGATGCTGGTTTTTCTGC	CGCAGAGTTAAAAGCAGCAGGATTTGAC
GCAAAAGAATTGAAAGATGCTGGTTTTTCTGC	TGCAGAATTAAAAGCAGCCGGATTTAGC
GCAAAAGAATTGAAAGATGCTGGTTTTAGTGC	CTCGGATTTGAAAAACGCAGGGTTTAGT
GCCTCAGAATTAAAGAATGCTGGATATTCTGC	CGACGAGCTAAAAAAAGCAGGATATACC
TCAGCTGAACTGAGAAATGCTGGTTTTTCTCC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP021262_1	1.1\|513776\|28\|CP021262\|CRISPRCasFinder	513776-513803	28	MH617420	Microviridae sp. isolate ctda655, complete genome	2114-2141	4	0.857
CP021262_1	1.2\|513836\|28\|CP021262\|CRISPRCasFinder	513836-513863	28	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1112477-1112504	4	0.857
CP021262_1	1.1\|513776\|28\|CP021262\|CRISPRCasFinder	513776-513803	28	KX513870	Human gut gokushovirus isolate SH-CHD7, complete genome	3712-3739	5	0.821
CP021262_1	1.5\|514016\|28\|CP021262\|CRISPRCasFinder	514016-514043	28	MN694311	Marine virus AFVG_250M573, complete genome	10970-10997	5	0.821
CP021262_1	1.5\|514016\|28\|CP021262\|CRISPRCasFinder	514016-514043	28	MH572400	Microviridae sp. isolate SD_SF_26, complete genome	1865-1892	5	0.821
CP021262_1	1.3\|513896\|28\|CP021262\|CRISPRCasFinder	513896-513923	28	NZ_CP009266	Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence	77668-77695	6	0.786
CP021262_1	1.3\|513896\|28\|CP021262\|CRISPRCasFinder	513896-513923	28	AP013512	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-C84-MedDCM-OCT-S29-C65	18412-18439	6	0.786
CP021262_1	1.5\|514016\|28\|CP021262\|CRISPRCasFinder	514016-514043	28	CP001772	Spirosoma linguale DSM 74 plasmid pSLIN03, complete sequence	9571-9598	6	0.786
CP021262_1	1.6\|514076\|28\|CP021262\|CRISPRCasFinder	514076-514103	28	MG945627	UNVERIFIED: Microviridae sp. isolate 6152-1602, complete genome	4943-4970	6	0.786
CP021262_1	1.7\|514136\|28\|CP021262\|CRISPRCasFinder	514136-514163	28	MK016664	Synechococcus phage S-B68, complete genome	82125-82152	6	0.786
CP021262_1	1.7\|514136\|28\|CP021262\|CRISPRCasFinder	514136-514163	28	MG945357	UNVERIFIED: Microviridae sp. isolate 2878-18011, complete genome	4023-4050	6	0.786
CP021262_1	1.7\|514136\|28\|CP021262\|CRISPRCasFinder	514136-514163	28	MG945367	UNVERIFIED: Microviridae sp. isolate 2878-1801, partial genome	2152-2179	6	0.786
CP021262_1	1.8\|514196\|28\|CP021262\|CRISPRCasFinder	514196-514223	28	MN657032	Psychrobacter sp. strain ANT_P15B plasmid pA15BP2, complete sequence	7476-7503	6	0.786
CP021262_1	1.4\|513956\|28\|CP021262\|CRISPRCasFinder	513956-513983	28	MK033137	UNVERIFIED: Pseudomonas phage UNO-SLW1, complete genome	19369-19396	7	0.75
CP021262_1	1.4\|513956\|28\|CP021262\|CRISPRCasFinder	513956-513983	28	KX449362	Pseudomonas phage UNO-SLW3, complete genome	16334-16361	7	0.75
CP021262_1	1.4\|513956\|28\|CP021262\|CRISPRCasFinder	513956-513983	28	KX449363	Pseudomonas phage UNO-SLW4, complete genome	16320-16347	7	0.75
CP021262_1	1.4\|513956\|28\|CP021262\|CRISPRCasFinder	513956-513983	28	NC_047873	Pseudomonas phage UNO-SLW1, complete genome	16414-16441	7	0.75
CP021262_1	1.4\|513956\|28\|CP021262\|CRISPRCasFinder	513956-513983	28	KX449361	Pseudomonas phage UNO-SLW2, complete genome	16320-16347	7	0.75
CP021262_1	1.5\|514016\|28\|CP021262\|CRISPRCasFinder	514016-514043	28	NC_031070	Bacillus phage Nemo, complete genome	129971-129998	7	0.75
CP021262_1	1.5\|514016\|28\|CP021262\|CRISPRCasFinder	514016-514043	28	MN038179	Bacillus phage ALPS, complete genome	129126-129153	7	0.75
CP021262_1	1.5\|514016\|28\|CP021262\|CRISPRCasFinder	514016-514043	28	MH638311	Bacillus phage OmnioDeoPrimus, complete genome	128883-128910	7	0.75
CP021262_1	1.5\|514016\|28\|CP021262\|CRISPRCasFinder	514016-514043	28	MF288918	Bacillus phage Bubs, complete genome	130009-130036	7	0.75
CP021262_1	1.6\|514076\|28\|CP021262\|CRISPRCasFinder	514076-514103	28	NC_019401	Cronobacter phage vB_CsaM_GAP32, complete genome	180398-180425	7	0.75
CP021262_1	1.8\|514196\|28\|CP021262\|CRISPRCasFinder	514196-514223	28	NZ_CP015329	Bacillus filamentosus strain Hbe603 plasmid pBEH7, complete sequence	1016-1043	7	0.75

1. spacer 1.1|513776|28|CP021262|CRISPRCasFinder matches to MH617420 (Microviridae sp. isolate ctda655, complete genome) position: , mismatch: 4, identity: 0.857

agctgagttaaaagcggccggttttagt	CRISPR spacer
tgctgacttaaaagcggccggtcttaat	Protospacer
 ***** ***************.***.*

2. spacer 1.2|513836|28|CP021262|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 4, identity: 0.857

aaaggaattgcgtgatgcgggattctcc	CRISPR spacer
acatgaattgcctgctgcgggattctcc	Protospacer
* * ******* ** *************

3. spacer 1.1|513776|28|CP021262|CRISPRCasFinder matches to KX513870 (Human gut gokushovirus isolate SH-CHD7, complete genome) position: , mismatch: 5, identity: 0.821

agctgagttaaaagcggccggttttagt	CRISPR spacer
cgctgatttaaaagcggcaggtttaaat	Protospacer
 ***** *********** ***** *.*

4. spacer 1.5|514016|28|CP021262|CRISPRCasFinder matches to MN694311 (Marine virus AFVG_250M573, complete genome) position: , mismatch: 5, identity: 0.821

cgcagagttaaaagcagcaggatttgac	CRISPR spacer
cgcagagtttcaagcagcaggatttata	Protospacer
*********  **************.

5. spacer 1.5|514016|28|CP021262|CRISPRCasFinder matches to MH572400 (Microviridae sp. isolate SD_SF_26, complete genome) position: , mismatch: 5, identity: 0.821

cgcagagttaaaagcagcaggatttgac	CRISPR spacer
ggcagatttaaaagcagcaggaattaat	Protospacer
 ***** *************** **.*.

6. spacer 1.3|513896|28|CP021262|CRISPRCasFinder matches to NZ_CP009266 (Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence) position: , mismatch: 6, identity: 0.786

aaaagatctaaaagacgctggtttttct	CRISPR spacer
ccccgatctaaaagacgcaggttttcct	Protospacer
    ************** ******.**

7. spacer 1.3|513896|28|CP021262|CRISPRCasFinder matches to AP013512 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-C84-MedDCM-OCT-S29-C65) position: , mismatch: 6, identity: 0.786

aaaagatctaaaagacgctggtttttct	CRISPR spacer
atttaatctaaaagatgctgatttttct	Protospacer
*   .**********.****.*******

8. spacer 1.5|514016|28|CP021262|CRISPRCasFinder matches to CP001772 (Spirosoma linguale DSM 74 plasmid pSLIN03, complete sequence) position: , mismatch: 6, identity: 0.786

cgcagagttaaaagcagcaggatttgac	CRISPR spacer
aaaagaattaaaagcagtaggatttgat	Protospacer
 . ***.**********.*********.

9. spacer 1.6|514076|28|CP021262|CRISPRCasFinder matches to MG945627 (UNVERIFIED: Microviridae sp. isolate 6152-1602, complete genome) position: , mismatch: 6, identity: 0.786

tgcagaattaaaagcagccggatttagc	CRISPR spacer
agccgacttaaaagcagccggattaaat	Protospacer
 ** ** ***************** *..

10. spacer 1.7|514136|28|CP021262|CRISPRCasFinder matches to MK016664 (Synechococcus phage S-B68, complete genome) position: , mismatch: 6, identity: 0.786

ctcggatttgaaaaacgcagggtttagt	CRISPR spacer
agtcgatttgaaaaacgcagcgtttaat	Protospacer
  . **************** *****.*

11. spacer 1.7|514136|28|CP021262|CRISPRCasFinder matches to MG945357 (UNVERIFIED: Microviridae sp. isolate 2878-18011, complete genome) position: , mismatch: 6, identity: 0.786

ctcggatttgaaaaacgcagggtttagt	CRISPR spacer
acaggatttgaaaaacgcaggtttgaat	Protospacer
 . ****************** ** *.*

12. spacer 1.7|514136|28|CP021262|CRISPRCasFinder matches to MG945367 (UNVERIFIED: Microviridae sp. isolate 2878-1801, partial genome) position: , mismatch: 6, identity: 0.786

ctcggatttgaaaaacgcagggtttagt	CRISPR spacer
acaggatttgaaaaacgcaggtttgaat	Protospacer
 . ****************** ** *.*

13. spacer 1.8|514196|28|CP021262|CRISPRCasFinder matches to MN657032 (Psychrobacter sp. strain ANT_P15B plasmid pA15BP2, complete sequence) position: , mismatch: 6, identity: 0.786

cgacgagctaaaaaaagcaggatatacc	CRISPR spacer
tgatcagctaaaaaaagcaggttataaa	Protospacer
.**. **************** ****

14. spacer 1.4|513956|28|CP021262|CRISPRCasFinder matches to MK033137 (UNVERIFIED: Pseudomonas phage UNO-SLW1, complete genome) position: , mismatch: 7, identity: 0.75

agcacagctcaaggccgctgggttttct	CRISPR spacer
agcgcagctcaaggccgctggcgtccac	Protospacer
***.*****************  *.. .

15. spacer 1.4|513956|28|CP021262|CRISPRCasFinder matches to KX449362 (Pseudomonas phage UNO-SLW3, complete genome) position: , mismatch: 7, identity: 0.75

agcacagctcaaggccgctgggttttct	CRISPR spacer
agcgcagctcaaggccgctggcgtccac	Protospacer
***.*****************  *.. .

16. spacer 1.4|513956|28|CP021262|CRISPRCasFinder matches to KX449363 (Pseudomonas phage UNO-SLW4, complete genome) position: , mismatch: 7, identity: 0.75

agcacagctcaaggccgctgggttttct	CRISPR spacer
agcgcagctcaaggccgctggcgtccac	Protospacer
***.*****************  *.. .

17. spacer 1.4|513956|28|CP021262|CRISPRCasFinder matches to NC_047873 (Pseudomonas phage UNO-SLW1, complete genome) position: , mismatch: 7, identity: 0.75

agcacagctcaaggccgctgggttttct	CRISPR spacer
agcgcagctcaaggccgctggcgtccac	Protospacer
***.*****************  *.. .

18. spacer 1.4|513956|28|CP021262|CRISPRCasFinder matches to KX449361 (Pseudomonas phage UNO-SLW2, complete genome) position: , mismatch: 7, identity: 0.75

agcacagctcaaggccgctgggttttct	CRISPR spacer
agcgcagctcaaggccgctggcgtccac	Protospacer
***.*****************  *.. .

19. spacer 1.5|514016|28|CP021262|CRISPRCasFinder matches to NC_031070 (Bacillus phage Nemo, complete genome) position: , mismatch: 7, identity: 0.75

cgcagagttaaaagcagcaggatttgac	CRISPR spacer
gaacaagttaaaggcagcaggatttgaa	Protospacer
 .  .*******.**************

20. spacer 1.5|514016|28|CP021262|CRISPRCasFinder matches to MN038179 (Bacillus phage ALPS, complete genome) position: , mismatch: 7, identity: 0.75

cgcagagttaaaagcagcaggatttgac	CRISPR spacer
gaacaaattaaaagcagcaggatttgaa	Protospacer
 .  .*.********************

21. spacer 1.5|514016|28|CP021262|CRISPRCasFinder matches to MH638311 (Bacillus phage OmnioDeoPrimus, complete genome) position: , mismatch: 7, identity: 0.75

cgcagagttaaaagcagcaggatttgac	CRISPR spacer
gaacaagttaaaggcagcaggatttgaa	Protospacer
 .  .*******.**************

22. spacer 1.5|514016|28|CP021262|CRISPRCasFinder matches to MF288918 (Bacillus phage Bubs, complete genome) position: , mismatch: 7, identity: 0.75

cgcagagttaaaagcagcaggatttgac	CRISPR spacer
gaacaagttaaaggcagcaggatttgaa	Protospacer
 .  .*******.**************

23. spacer 1.6|514076|28|CP021262|CRISPRCasFinder matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 7, identity: 0.75

tgcagaattaaaagcagccggatttagc	CRISPR spacer
aagagaattacaagcagccggaattact	Protospacer
 . ******* *********** *** .

24. spacer 1.8|514196|28|CP021262|CRISPRCasFinder matches to NZ_CP015329 (Bacillus filamentosus strain Hbe603 plasmid pBEH7, complete sequence) position: , mismatch: 7, identity: 0.75

cgacgagctaaaaaaagcaggatatacc	CRISPR spacer
aatagaactagaaaaagcaggatatact	Protospacer
 .  **.***.****************.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage