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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP021282 Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0
CP021281 Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) chromosome, complete genome 3 crisprs NA 0 7 0 0

Results visualization

1. CP021281
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021281_1 189831-192808 Orphan NA
41 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021281_2 2401901-2402029 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021281_3 3164165-3164659 Orphan NA
10 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP021281_1 1.16|190937|34|CP021281|CRISPRCasFinder,CRT 190937-190970 34 NZ_CP021285 Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence 33767-33800 3 0.912
CP021281_1 1.16|190937|34|CP021281|CRISPRCasFinder,CRT 190937-190970 34 NC_006366 Legionella pneumophila str. Lens plasmid pLPL, complete sequence 43841-43874 3 0.912
CP021281_3 3.8|3164507|27|CP021281|CRT 3164507-3164533 27 NZ_CP053936 Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed4, complete sequence 11652-11678 4 0.852
CP021281_3 3.8|3164507|27|CP021281|CRT 3164507-3164533 27 NZ_CP053933 Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed2, complete sequence 41502-41528 4 0.852
CP021281_3 3.8|3164507|27|CP021281|CRT 3164507-3164533 27 NZ_CP009718 Bacillus thuringiensis strain HD682 plasmid pBGN_2, complete sequence 15494-15520 4 0.852
CP021281_3 3.10|3164606|27|CP021281|CRT 3164606-3164632 27 NZ_CP053936 Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed4, complete sequence 11652-11678 4 0.852
CP021281_3 3.10|3164606|27|CP021281|CRT 3164606-3164632 27 NZ_CP053933 Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed2, complete sequence 41502-41528 4 0.852
CP021281_3 3.10|3164606|27|CP021281|CRT 3164606-3164632 27 NZ_CP009718 Bacillus thuringiensis strain HD682 plasmid pBGN_2, complete sequence 15494-15520 4 0.852
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 MN693625 Marine virus AFVG_250M334, complete genome 30638-30671 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NZ_CP020506 Serratia marcescens strain 95 plasmid unnamed1, complete sequence 6512-6545 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NZ_CP022274 Citrobacter freundii strain 18-1 plasmid pA18-1, complete sequence 85367-85400 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NZ_CP026551 Citrobacter sp. SL156 plasmid unnamed2 80071-80104 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NZ_CP022697 Citrobacter farmeri strain AUSMDU00008141 plasmid pAUSMDU8141-2, complete sequence 56497-56530 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NC_019013 Escherichia coli strain G3/10 plasmid pSYM1, complete sequence 9531-9564 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 CP052139 Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence 96043-96076 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 MN699848 Citrobacter pasteurii strain 175G8 plasmid pCfr-OXA-198, complete sequence 136300-136333 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NZ_KY416992 Escherichia coli strain FAM21805 plasmid unnamed, complete sequence 46142-46175 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NZ_CP020508 Serratia marcescens strain BWH-35 plasmid unnamed, complete sequence 187130-187163 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NZ_CP017222 Escherichia coli strain FAM21845 plasmid pFAM21845_2, complete sequence 38341-38374 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NC_019254 Shigella sp. MO17 plasmid pMO17_54, complete sequence 16864-16897 7 0.794
CP021281_1 1.2|189939|34|CP021281|CRISPRCasFinder,CRT 189939-189972 34 NZ_CP049048 Enterobacter hormaechei strain Y233 plasmid p233-142, complete sequence 109547-109580 7 0.794
CP021281_1 1.14|190796|31|CP021281|CRISPRCasFinder,CRT 190796-190826 31 NZ_AP014824 Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence 8512-8542 9 0.71
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 NZ_CP040051 Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence 65151-65184 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 NZ_CP012007 Acinetobacter baumannii strain Ab04-mff plasmid pAB04-1, complete sequence 55277-55310 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 CP040054 Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence 51450-51483 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 NZ_CP012005 Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence 53921-53954 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 MF399199 Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence 177496-177529 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 NZ_AP014650 Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence 93937-93970 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 NZ_CP050433 Acinetobacter baumannii strain PM194229 plasmid pPM194229_1, complete sequence 119339-119372 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 LT605060 Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2 43536-43569 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 NZ_KU744946 Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence 171009-171042 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 NZ_KT779035 Acinetobacter baumannii strain D4 plasmid pD4, complete sequence 103008-103041 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 NZ_MK323043 Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence 4445-4478 10 0.706
CP021281_1 1.24|191514|34|CP021281|CRISPRCasFinder,CRT 191514-191547 34 CP033562 Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence 61395-61428 10 0.706
CP021281_1 1.10|190511|34|CP021281|CRISPRCasFinder,CRT 190511-190544 34 NC_019509 Cronobacter phage ESP2949-1, complete genome 8672-8705 12 0.647
CP021281_1 1.10|190511|34|CP021281|CRISPRCasFinder,CRT 190511-190544 34 MH845412 Cronobacter phage CS01, complete genome 13237-13270 12 0.647

1. spacer 1.16|190937|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.912

gaatttgtcggccgcatagaccgcttttatcaaa	CRISPR spacer
gaatttgtcggccgcatagaccgcttttatcgtt	Protospacer
*******************************.  

2. spacer 1.16|190937|34|CP021281|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 3, identity: 0.912

gaatttgtcggccgcatagaccgcttttatcaaa	CRISPR spacer
gaatttgtcggccgcatagaccgcttttatcgtt	Protospacer
*******************************.  

3. spacer 3.8|3164507|27|CP021281|CRT matches to NZ_CP053936 (Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.852

aaaggagaaacgggagcagtaggtcca	CRISPR spacer
acgggagaaacgggagcaacaggtcca	Protospacer
* .***************..*******

4. spacer 3.8|3164507|27|CP021281|CRT matches to NZ_CP053933 (Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.852

aaaggagaaacgggagcagtaggtcca	CRISPR spacer
acgggagaaacgggagcaacaggtcca	Protospacer
* .***************..*******

5. spacer 3.8|3164507|27|CP021281|CRT matches to NZ_CP009718 (Bacillus thuringiensis strain HD682 plasmid pBGN_2, complete sequence) position: , mismatch: 4, identity: 0.852

aaaggagaaacgggagcagtaggtcca	CRISPR spacer
acgggagaaacgggagcaacaggtcca	Protospacer
* .***************..*******

6. spacer 3.10|3164606|27|CP021281|CRT matches to NZ_CP053936 (Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.852

aaaggagaaacgggagcagtaggtcca	CRISPR spacer
acgggagaaacgggagcaacaggtcca	Protospacer
* .***************..*******

7. spacer 3.10|3164606|27|CP021281|CRT matches to NZ_CP053933 (Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.852

aaaggagaaacgggagcagtaggtcca	CRISPR spacer
acgggagaaacgggagcaacaggtcca	Protospacer
* .***************..*******

8. spacer 3.10|3164606|27|CP021281|CRT matches to NZ_CP009718 (Bacillus thuringiensis strain HD682 plasmid pBGN_2, complete sequence) position: , mismatch: 4, identity: 0.852

aaaggagaaacgggagcagtaggtcca	CRISPR spacer
acgggagaaacgggagcaacaggtcca	Protospacer
* .***************..*******

9. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to MN693625 (Marine virus AFVG_250M334, complete genome) position: , mismatch: 7, identity: 0.794

tcactactcctgaaggttataatttttgctataa	CRISPR spacer
tcactactcctgaaggttttaattggatatatga	Protospacer
****************** *****     ***.*

10. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP020506 (Serratia marcescens strain 95 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

11. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP022274 (Citrobacter freundii strain 18-1 plasmid pA18-1, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

12. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP026551 (Citrobacter sp. SL156 plasmid unnamed2) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

13. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP022697 (Citrobacter farmeri strain AUSMDU00008141 plasmid pAUSMDU8141-2, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

14. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NC_019013 (Escherichia coli strain G3/10 plasmid pSYM1, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

15. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to CP052139 (Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

16. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to MN699848 (Citrobacter pasteurii strain 175G8 plasmid pCfr-OXA-198, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

17. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NZ_KY416992 (Escherichia coli strain FAM21805 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

18. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP020508 (Serratia marcescens strain BWH-35 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

19. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP017222 (Escherichia coli strain FAM21845 plasmid pFAM21845_2, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

20. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NC_019254 (Shigella sp. MO17 plasmid pMO17_54, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

21. spacer 1.2|189939|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP049048 (Enterobacter hormaechei strain Y233 plasmid p233-142, complete sequence) position: , mismatch: 7, identity: 0.794

tcactactcc-tgaaggttataatttttgctataa	CRISPR spacer
-catcactttatgaaggttattatttttgctaaaa	Protospacer
 **..***.. ********** ********** **

22. spacer 1.14|190796|31|CP021281|CRISPRCasFinder,CRT matches to NZ_AP014824 (Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence) position: , mismatch: 9, identity: 0.71

attttaccttttaacacatattgataggcgt	CRISPR spacer
attttaccctttaacacatcttggaaacgag	Protospacer
********.********** ***. *.  . 

23. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP040051 (Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

24. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP012007 (Acinetobacter baumannii strain Ab04-mff plasmid pAB04-1, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

25. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to CP040054 (Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

26. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP012005 (Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

27. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to MF399199 (Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

28. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to NZ_AP014650 (Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

29. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to NZ_CP050433 (Acinetobacter baumannii strain PM194229 plasmid pPM194229_1, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

30. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to LT605060 (Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

31. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to NZ_KU744946 (Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

32. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to NZ_KT779035 (Acinetobacter baumannii strain D4 plasmid pD4, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

33. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to NZ_MK323043 (Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

34. spacer 1.24|191514|34|CP021281|CRISPRCasFinder,CRT matches to CP033562 (Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence) position: , mismatch: 10, identity: 0.706

ttcttttttcagatttcatttccttttccttgtg	CRISPR spacer
cctgatcttcagattcgatttccttttccttttc	Protospacer
...  *.********. ************** * 

35. spacer 1.10|190511|34|CP021281|CRISPRCasFinder,CRT matches to NC_019509 (Cronobacter phage ESP2949-1, complete genome) position: , mismatch: 12, identity: 0.647

ctaacctgattgctcaacaaataatgctattggc	CRISPR spacer
tacggttgattgcttaacaaaaaatgctatgatg	Protospacer
.  . .********.****** ******** .  

36. spacer 1.10|190511|34|CP021281|CRISPRCasFinder,CRT matches to MH845412 (Cronobacter phage CS01, complete genome) position: , mismatch: 12, identity: 0.647

ctaacctgattgctcaacaaataatgctattggc	CRISPR spacer
tacggttgattgcttaacaaaaaatgctatgatg	Protospacer
.  . .********.****** ******** .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage