CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027656	Pseudomonas chlororaphis subsp. piscium strain ZJU60 chromosome, complete genome	1 crisprs	DEDDh,DinG,csa3,cas3,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027656_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027656_1

2950263-2950345

Orphan

Consensus_repeat	Method
ACCGCAGTAACGGATATGTACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027656_1

>merge|CP027656|1|2950263-2950345|CRISPRCasFinder
ACCGCAGTAACGGATATGTACACCCACCCCGCTGTAAGAGCGGAACCCTAGGTGGCCATTACCGCAGCAACGGATATGTACAC

>CP027656|1|1|2950263-2950345|CRISPRCasFinder
ACCGCAGTAACGGATATGTACAC	CCACCCCGCTGTAAGAGCGGAACCCTAGGTGGCCATT
ACCGCAGCAACGGATATGTACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP027656.1\|AVO58942.1\|2944347_2945331_+\|HxcX-atypical-pseudopilin	unknown	unknown	gnl\|CDD\|377165
CP027656.1\|AVO58954.1\|2972553_2973156_+\|N-acetyltransferase	unknown	unknown	unknown
CP027656.1\|AVO58951.1\|2969913_2970177_-\|short-chain-dehydrogenase	unknown	unknown	unknown
CP027656.1\|AVO58949.1\|2954918_2956079_+\|protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|270283
CP027656.1\|AVO58946.1\|2950380_2951802_+\|type-II-secretion-system-protein-GspE	unknown	unknown	gnl\|CDD\|131585
CP027656.1\|AVO58940.1\|2943294_2943723_-\|type-II-secretion-system-protein-GspI	unknown	unknown	gnl\|CDD\|273767
CP027656.1\|AVO58939.1\|2942729_2943161_+\|general-secretion-pathway-protein-GspC	unknown	unknown	gnl\|CDD\|378647
CP027656.1\|AVO58953.1\|2972081_2972477_+\|hypothetical-protein	unknown	unknown	unknown
CP027656.1\|AVO58938.1\|2942159_2942621_-\|type-II-secretion-system-protein-GspH	unknown	unknown	gnl\|CDD\|130769
CP027656.1\|AVO58950.1\|2956217_2968883_+\|hemagglutinin	unknown	unknown	gnl\|CDD\|372178
CP027656.1\|AVO58937.1\|2941539_2942163_-\|type-II-secretion-system-protein-GspJ	unknown	unknown	gnl\|CDD\|227132
CP027656.1\|AVO58944.1\|2946513_2947080_+\|general-secretion-pathway-protein-GspM	unknown	unknown	gnl\|CDD\|377391
CP027656.1\|AVO62275.1\|2969106_2969727_+\|flagellar-biosynthesis-protein	unknown	unknown	unknown
CP027656.1\|AVO58952.1\|2970615_2972085_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|269829
CP027656.1\|AVO58948.1\|2953641_2954799_+\|protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|270283
CP027656.1\|AVO58943.1\|2945327_2946521_+\|type-II-secretion-system-protein-GspL	unknown	unknown	gnl\|CDD\|273768
CP027656.1\|AVO58945.1\|2947076_2949491_+\|type-II-secretion-system-protein-GspD	unknown	unknown	gnl\|CDD\|274175
CP027656.1\|AVO58947.1\|2951801_2953013_+\|type-II-secretion-system-protein-GspF	unknown	unknown	gnl\|CDD\|273980
CP027656.1\|AVO58936.1\|2940277_2941228_+\|iron-dicitrate-transport-regulator-FecR	unknown	unknown	gnl\|CDD\|226235
CP027656.1\|AVO58941.1\|2943871_2944339_+\|type-II-secretion-system-protein-GspG	unknown	unknown	gnl\|CDD\|130771

Protein	Function_ID	Function_description	E-value
CP027656.1\|AVO58942.1\|2944347_2945331_+\|HxcX-atypical-pseudopilin	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	2.60777e-61
CP027656.1\|AVO58952.1\|2970615_2972085_+\|hypothetical-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	3.0397e-23
CP027656.1\|AVO58949.1\|2954918_2956079_+\|protein-disulfide-reductase	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.49899e-20
CP027656.1\|AVO58946.1\|2950380_2951802_+\|type-II-secretion-system-protein-GspE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
CP027656.1\|AVO58940.1\|2943294_2943723_-\|type-II-secretion-system-protein-GspI	gnl\|CDD\|273767	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I. This model represents GspI, one of two proteins highly conserved at their N-termini and described by pfam02501 but easily separable phylogenetically. The other is GspJ. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.	1.54132e-20
CP027656.1\|AVO58939.1\|2942729_2943161_+\|general-secretion-pathway-protein-GspC	gnl\|CDD\|378647	pfam11356, T2SSC, Type II secretion system protein C. This is the greater N-terminal region of GspC-type proteins. GspC proteins form part of the sophisticated transport mechanism of Gram-negative pathogens for injecting divers proteins into their hosts, a type-II secretion system - T2SS. The region is made up of a short N-terminal cytoplasmic domain that is followed by the single transmembrane helix, a Pro-rich linker, and the so-called homology region domain in the periplasm. This inner membrane GspC interacts with the outer membrane secretin GspD via periplasmic domains, an interaction which is critical for the effectiveness of type II secretion.	3.879e-08
CP027656.1\|AVO58938.1\|2942159_2942621_-\|type-II-secretion-system-protein-GspH	gnl\|CDD\|130769	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.1718e-26
CP027656.1\|AVO58950.1\|2956217_2968883_+\|hemagglutinin	gnl\|CDD\|372178	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam05860.	2.87381e-45
CP027656.1\|AVO58937.1\|2941539_2942163_-\|type-II-secretion-system-protein-GspJ	gnl\|CDD\|227132	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion].	6.37294e-24
CP027656.1\|AVO58944.1\|2946513_2947080_+\|general-secretion-pathway-protein-GspM	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	1.43353e-20
CP027656.1\|AVO58948.1\|2953641_2954799_+\|protein-disulfide-reductase	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.64977e-29
CP027656.1\|AVO58943.1\|2945327_2946521_+\|type-II-secretion-system-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	3.57502e-37
CP027656.1\|AVO58945.1\|2947076_2949491_+\|type-II-secretion-system-protein-GspD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	0
CP027656.1\|AVO58947.1\|2951801_2953013_+\|type-II-secretion-system-protein-GspF	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	1.38939e-178
CP027656.1\|AVO58936.1\|2940277_2941228_+\|iron-dicitrate-transport-regulator-FecR	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.65561e-68
CP027656.1\|AVO58941.1\|2943871_2944339_+\|type-II-secretion-system-protein-GspG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	5.41271e-58

>CP027656.1|AVO58945.1|2947076_2949491_+|type-II-secretion-system-protein-GspD
MKWSGSFYARQSRKALPLLLLGPLALALAACSNNKEPQPPLLVDSELGRPLGETNRSGGDVVAERERAQAQQPQRPKYQHPISRAGRAPGAPAASSTVVRNPLGDQPVRLNFVDVDIQAVVRALARSTGQQFLVDPRVKGNLTLVSEGEVPAHQAYDMLLAALRMQGFSVVDVGGVAQVVPEADAKLLGGPIYNAGKPSANGMLTRTFRLQYENAVNLIPVLRPIVSPNNPINAYPGNNSIVITDYAENLTRVAQIIEGIDIPSALDTDVVPVQNGIAVDIAGMVSELLETQGADPTQKVSVVGDPRSNSIIIRTGSPERTELARNLIYKLDNAQSNPSNLHVVYLRNAQAGKLAQALRGLLTGESDSGTGDNARAMLGSMGGMSQGGSSSSGQSGSTSSTSGSSSLSGSSGSGSGYAQGGSSSSQGGTQASDQNPAFSAGGVTIQADATTNTLLISAPEPLYRNLREVIDMLDQRRAQVVIESLIVEVNEDDAAEFGVQWQTGNLGGSGVIGGANLGGSGLNLNGKTSIDVLPQGLNVGLVNGTVDIPGIGKILDLKVLARALRSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGNSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASVEAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNNAVPWLSTLPGIGALFRNEGRSTNKTNLMVFLRPYIIRDSAAGRSITLNRYDFMRRAQGGLQPDRSWAMPDMQAPQLPTAEQGVPGVVPVASPTPGAGSGQVPRARIRAVPVQ
>CP027656.1|AVO58944.1|2946513_2947080_+|general-secretion-pathway-protein-GspM
MNKLSLSHYRQRWQRQAAQAQLYWNGLALREKRLLAGAAAVLGGLLVWLVLIEPALKKIDYWQAEIPKLRSQSEALELVLHQAGGPRGGEAGQSLEQSLRQTLDAAGLQGLYQLQVAGEGESQAWHLSFQEAPADAVVGWLLGNPRQFSLEVMEARLQRAGPADIDGTAGKLSGTVRMDQALGAKEAS
>CP027656.1|AVO58943.1|2945327_2946521_+|type-II-secretion-system-protein-GspL
MSRLRVSLPPLHTLTAESRVRFARLQAKEGQVKEAGEASLRQLGQVPKAPAVECFLHPEDSLLASIELPALAPAKVSAAVACAAQALILGHSDNMYVAHSPRDSDGQVHISWLPREALAQLGQVLEQAGLKLRGLYPAPYALPVPAAGQLTACLQDQHLLLRHSPQQASVQPLPEDALQALLANGAGLQWVGEAAPQGVLEQLPDSCRWTGTSPAWGLHGGVQNNSAGQQGWGRAAALCAVALVVWTLGLNLYAARQAAQGQQLKAQMSQRVQQVFPELPVILNPLQQARQQLAARQSGASGDAPQSFNSLVQQASNAMPFVIGGVEQLIYENGELQLSLLSDTRVPPPGSGWQGLLSQAGLEASSGDQGWTLRAATSMATGAVPMEADDSEEDEDE
>CP027656.1|AVO58942.1|2944347_2945331_+|HxcX-atypical-pseudopilin
MTARSPTAAKQRGMAIISALLIAAVVAVIAGGMLTRQTLFTRGLESEQLRVQGSWQLQGGMEVSRQRLWEDRQRDVLTRLDQNWARPIQLAALGPGAGPFEGRLEDEQGKFNLRNLLANDRLDPLQIENFQRLCELLGVNATLGQRISQRVIASYPRLLSPEGAAAPVNSSFHSGRDTSPEAARKPLLAKQPMLRSLDDLLGVNGVDEKLLARLEPFVTILPANTWVNGNTASAEVLSATVPGLALPRAKALIAERDSGQWFINQGDFINRLRMPNVPADAVRVGITSEWFRLQGQARGERRRVKLLALLHRSEDNMPRVIWSRVGV
>CP027656.1|AVO58941.1|2943871_2944339_+|type-II-secretion-system-protein-GspG
MDVVRFMSHPQSNPKPRRPHGQGGFTLIEIMVVVVILGILAAMVVPKVLDRPDQARATAAKQDIGGLMQALKLYRLDHGTYPSMNQGLKVLVERPADAKNSNWRSYLERLPNDPWGRPYHYLNPGANGEVDVFSLGADGQPDGDGVNADIGSWQL
>CP027656.1|AVO58940.1|2943294_2943723_-|type-II-secretion-system-protein-GspI
MPGPRQPLNKRPARRPATKQRGFTLIEVLVALAIIAVAMSAAIRVAGLMTQSNGLLRDKSIALLAAQSRLAELRLEGRLSPGTKNIECDQGRLKLRCEQNIAPSPDPRLSRVSVLVLDRSREAPPLARLDTLVARVPKNPNR
>CP027656.1|AVO58939.1|2942729_2943161_+|general-secretion-pathway-protein-GspC
MAFVHRFSPPQLVQSLALLAIVAGVATWSSLLLTPAESRTPQAPPQALAAQAQSPAQQWFSNQPLALDIKVTGLMASPRGAVAILSLNDAPPRSFLVGERLAQGVQLVAIEGDGVVIERGGERSRLDVSKLPESPALPVLTRQ
>CP027656.1|AVO58938.1|2942159_2942621_-|type-II-secretion-system-protein-GspH
MTPSRQQGFTLIELMVVLVIIGIASAAISLSIRPDPLQGLRKDAERLAQLLQVAQAEARVDGRPISWRADAKGFAFSRPSDDGRGLDQFKDDPQLRPRPWESSSIKVRIEPGPRLVLNAEWIDAPLQVQLSDGQHSLTVQRTATGVVRVVALP
>CP027656.1|AVO58937.1|2941539_2942163_-|type-II-secretion-system-protein-GspJ
MKARIKQRQGGFTLIEVMVAILLMAVVSVIAWRGLDSVSRADSHLQASSEQTEALLRTLHQLERDVALRASVELMEPVPAGADAEAPDVPPALTVRSADSGTFRLDVIRTAATPGEGLQRVRWWLKGDTLYRAAAPARDRYPLPAPKNGVAVLEHVSDLQLRVWDRDKGWRQLSGNRKENPPGLEIRLVRQTPQGEERYRQVLGPLE
>CP027656.1|AVO58936.1|2940277_2941228_+|iron-dicitrate-transport-regulator-FecR
MNIFSISTSRATPDHRLRNEAQDWLLLLTSGRATAADARALQQWCAQSPQHAEAFEQAKLLWHSLKPAAEQCQQQTQPRRFGRRAFLGGALAASVALVAVRISVPGGFAGLSADYRTEVGEQRRVELEDGLSLELNTQTRISRRELAQGGQGIELLEGEVEVSSQGALPVRVQAGNGWLSASQARFNVRNINHNVCVTCIDGALQVEVAGRLIRLDSGRQLTYDSRQVGEPKAVDPAAVIAWREQVLVFDNATLNTVIDEINRYRPGMLVLLNAELGKRKVQARFNLNQLAGVALLIRDAYGAKCTELPGGVVLLS
>CP027656.1|AVO58946.1|2950380_2951802_+|type-II-secretion-system-protein-GspE
MNPQLPYAWAKSQHILLRHSEEGAVLLVCPSTPGWSISEVRRQFGPARLERVRDEELDGLLASAYSDTGSAAAVVGAAENEVDLDRLMQDIPEITDLLDTQDGAPVIRMINALLTQAARDEASDIHIEPYESHSVVRYRVDGTLRDVVSPRKALHGALVSRIKIMAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRLQLETLGMDPQVLGKLDNLIRQPHGIVLVTGPTGSGKTTSLYAALARLDASTSNILTVEDPVEYDLPGISQIQVNAKIDMTFALALRAILRQDPDIIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAVSAVNRLIDMGVEPFLLASSMLGVLAQRLVRRLCPHCKEEDPTAPGTWRPVGCPACNQVGYSGRTGIHELFCIDDDIRSLIHQGADEQALRAAARRAGMFSMREDGERWVRSGATAPEEILRVTRDA
>CP027656.1|AVO58947.1|2951801_2953013_+|type-II-secretion-system-protein-GspF
MNRYRYEAADALGKIESGHLEADSQSAAFGVLRSRGLTALLVQVESNTPKAGGAGLFSAKLSDNDLAWATRQLASLLGASLPLEAALSATVEQAERKHIAHTLSAVRADVRSGMRLAEALAARPRDFPDIYRALIAAGEESGDLAQVMERLADYIEERNTLRGKILTAFIYPGVVGLVSVGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWLCFGVLAGGFWSWRLYLRNPQARLNWHSRVLRLPLIGRFVLGLNTARFASTLAILGGAGVPLLRALEAARQTLSNDRLSQSVSDATAKVREGVNLAAALRVEKVFPPVLIHLIASGEKTGALPPMLERAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLVIVMAVLLPIIEINQLVQ
>CP027656.1|AVO58948.1|2953641_2954799_+|protein-disulfide-reductase
MFKRTMIAASMAVAALASAQSMAAVVGGGATLPQQLYNTPGVLNSGFSAYFGVGSGGGKTAVLTNNLGSLNSNLPAGTTVDYAGSDSILSASEISTYQAAHQSPGVPATDAANWGPLLQFPSAATSVTIPYNKAGTTNLNLTSEQLCLALSSNNGAARTWGEVLGTSDTTPVRVVFRSNSSGTSEILTRHLNNRCGSLFTTVSSTFANAQPGAEPATWIGVTTSAAVASTVASTAGAIGYVGPEDVDATNNAVVARVNGLLPTVGNVQTALSTIDPPSTAADRADLTKWAPVLPNPATGYSIVGYTNFIFGQCYKDTADVTSIRTFLTKHYNATFANSNDQAIIDKKLIPLTANWKTAIRGAFIPPTSAQGVNNASVCNGIGRPA
>CP027656.1|AVO58949.1|2954918_2956079_+|protein-disulfide-reductase
MSRYLLIALAGALTGLCSAAASAALDGGGSYLMQGFYNTPGVLPPTAGAYRAAGSGAGKKALLINDSQALTPGSSVPFSVDYAISESRLTVNELAEYRSNHQVPGAVAGSAADWGPLIQVPVAITSVAIPYRVRLASGQPVTDLDLNGGMLCGLFSGAITTWDEINPVYSRTPVKVIYRADRAGTSEILTRHLNSLCPQAFNIGNLFVSAHRGPLPGHWQAVSSDQALLAGVAANEGAIGYSGPAALDITSNAQVARVNGLLPPTASTPISLTQIAPPASASDRTDPHKWAPDIANPAYGYAMVAYSYLIFGQCYRDLRDVTAMRSLLMRHFGPNPQVNTDAQLNAQHLIPVDALWKKAVRDNFLLTTNPLSLNYPSVCNGIGRPL
>CP027656.1|AVO58950.1|2956217_2968883_+|hemagglutinin
MRLGKPNPVLKSASRCEALPVLHLKPLAHAIALLLVAGSAQAETAFSAGWFASKGAAQQAAGAGGVAGSLPKPGSPPPLAQQLKANQQLQQSLSNVNNTVAAIAAQQAAQAAGRRSALVAASSIPDGLSEGGLKVDENALTKGWTNARNPVQTQADGKTTVSIGQTADKAILNWETFNVGRNTTVDFQQQADWAVLNRVNDPQARPSEIQGQIKAAGTVMLVNRNGVIFSGSSQVDTRNLVAAAATISDSQFRERGLYVDSSGSQPTFTDAAGKVQVQQGALIQTRAPGVSTESGGYVLLLGSEVDNAGSLVTPKGQATLAAGDSFYIRRGAGTAGNTTSTTRGNEVASTRKAGSQAGKVSNNGLIQAATGDITLTGHQVQQNGVVLATTSVDSRGTVHLLNSASDSSSSVTLGQGSHTAILLDAASGTALDSQRAAGLAGIGGQGNNIGGTFDNLSSVVDRANQSRVEIVSGGTVDFQSGSSTLATGGQVAVSAGQRSLVRDGAVIDVAGAVGVKVAMEANSVKVNIQGNEQRDAAGNRDQGSLNNNDVWVDVRELVYVPAGTNGYATDRWYTGGGLLEVGGYLGTQAHGVGEWMAQGGSVTFTGRDVVTQAGSSINLSGGTLDVQGGLVRQTWLKGADGRLYELSRAPGDILYSGIYKGYEDNSPRWGQTDYYYSPLIAPQQRYEEGYSVGRDAGKLVVGTGSAVLEGQLLGNTYQGERQAQAAQAGLDGYDQAQNAVARGAQLIVGDYRPFWQKDSGALQNTLQATDRTLKQVILAPGQVAEALAIELNSALGERQGQLRLDTEQLNGFALGAVRIAAHESVTVDGNLRVGPAGEIALHGLQVRVNAGLTSHGGRIALGNVLLQRPASTAAPVDTLIGSTAGPMASLVLSDRARLDTSGLWSNLLLAPQDNSGLAFVNGGSVSLRSSGDLTLAAGSQVDVSSGAALLVNGSLRGGKGGDLTLAANAGSTAGSGVLTLAGQLKAHGVNGGGNLSLQAGKVQIGGAAAPDAATLVLASDFFGKGFGAYEIIGNQGLKVAEGAQVDVRVPVYAQAAGTASVATGEPAASALQPWLPEPYQEDPVNGRLSQRAGASLTLQTGGLGSSAADIASVALDIGQGATVRVDNGQSIALRGIGQISVDGHLIAQGGKVSISATRMPKVDTDALTTTHQRSILLGSNALVDVSGYVVSALDAQGRRYGKVGDGGSIVIGGALDPATGRAAAPDLFVQLKTGSRLEASGAQAVLDIRGTGPMPLASNGGSISLSSLNGLYLDGDLRAASGGQGAAGGSLTVALETAAYDSAQLGSDTPLAPRELLISQRRRSLDDAVFGALAYGQGNLSVEQVDAGGFGNLALLSNGQISFDGDVDLALGQSLQLYSASLGLAEGSAADTRVRLSAPYVRLAEAARNNNGSPGLTVPVVRGGSSTQATQAQLVVASQLLDIRDEVNLGAHGNINLRSGQLPLDQRGFATMDVRSTGDMRMLRPTGNISVTRLNTPGDLNLTVAQLYPETLARAEIRARHLSIGRSSAQDPDVPYSAYGSLLLSAQSIDQGGVVRAPQGSLVLGFSNGPQDNSSIIRLLPGSLTSLSAAGLVMPFGGTVDGQTWTQDGKPLGESVLNPILGPDWLTLTMLGQSIDVQSSAVVDLSGGGELTGAGFVSGRGGSTDARFNPLVQIGADGRFSLPGLASNPVYAIVPGSQAGYAPGAGQSGALDPVIGQQITLEAGVPGLAPGVYTLLPANYALLPGAFRVELNGGAGLAAQQPGLAMANGSWSTSGRLSVLGTGIQDSLSRQVILTSADVLRRYSQYNETSLAQFLVSDAARLGIPRAALTADAKGLTLSLLQNQTGQPSFTYAGTSRFNPDKGGYGTVASVLSQSQSSQMEIVAGGPSAGFTGTSIDAAQLNALGSASLRIGGTGTRQYGQGGNYIAFSSNLTDLTLRSGALLSAPEVMLLSGMTTGGIVVEQGAGIDTLGRGASAYDSRDGFIYDPGRTSLLAVSNGWLDLLPPTPAQNGQVGPGSIRIGSCAGSCNGVTQLYSEGTLAAATDNLFELGDEVRYGTRNLTLAVGGVNVGSSQSLAEAAAGNTLAPGLTLNQQVLDRLLRGDRERGAPALETLTLNARDSLNFYGSTQLSTLDPVTGKSSLSNLILGTPAIYGHGGAEDVASIRTANLIWNGTAGLPGTVINQGAGTGSGRLELAAERIEFGYGPQSQPDSLASFDRLALGFARVDLRASQRLTANHKGSLAVYQSQGAYESGKGYSYSGGDLNIVTPLLTGEAGSVNRIKVGGDIRISGGGAVPGPINTLGGELALEGRSISLDTAVVLPSGKLSLLAERDLVLADNARLDLAGRTVPFNDLNKYSWGGDVMLESRGGDIRQAVGSRIDLSAQNNKAGTLSAIALDPGAGQVELLGAILGGTSGHYDAGGTRVPYKAGGVDIRAQGVGDFAALNQRLNEGQVYGSRSFQLKQGDLQLGSELKAGEINLSLDNGHLTVLGTVDASGEQVGSIRLAARNGLTLGDAALLDAHGTQLRVDSYGKIIDAPNRAVVELTSGEGRLVLAEGSRIDLRHGTAAAPGSQPGQHDGQARGTLELNAPRLGGVSGGDIDIDASGRQQISGAKSIAVNGIWRYDDSDSDAVLKDGSDAASGKPYRVIDQAYMNLKHDQSTAFIDAALANATLLDGKLAGLTAGGYGDVLHLRPGVQISSERDVVIQGDLDLSGYRYASLNPRFARTAVYGSGETGSLAIRAAGNLEVRGSVTDGFTPPPATPDDAGWVLLPGMQPFGGELVVPGLGVTLADGTLFQGGKTLNYDLPIKATTFASGVVLPTEGRLAQALTLEAGSVVRGDVRAADGSLLYAAGTLLEQAVTLPVGTRLGAGTLLTSRTALQAMLWPKGVALPATLDPSSGQQDTYALNGDLALKAGALIPSQTDVKLPNGALSVALRPTDGESQGRNWAIAGLLPEGSQSWSLRLVSGADTSAADTRSVKPRVVDGQLILADTHYSLFRDREIVPGKPGGNWVWGPEAEGPDWSWLGGVVGQPLSPEDLANGYCDWAPGLCEFKPSVDSWVWGPEVESPDWSWLGGVVGQPLSPEDLANGYCDWAPGLCVFKPGEPGEPDKPGEVIAVRAMAPIFSVLRTGTGDLDLIAGGDLSMQSVFGVYTAGTQSPAMGAGFAATRGVGSAGTVLGGYNSLPLYGNANYKAGFDEQVAAYEKLVTGADLYQAWYPEQGGNLLLSTAGSLRGDALGSTWDQSANSTALSSAGTGNWLWRQGSGSAALDQAVPTAWWINFGTYVTPTVGAPMPQVTGFTGVGTLGGGNLDVRVGTDAGTLLRRGNRDMTMPRSEALILAVGSTGRVTADGSLALTGGGDLKLNIGGSLNPSLDARASSVGSGPAVGQNHELNGALINLRGNVQVDAGALGGIKQSFGRFSLNQDASEVRAYDPYSASVASATGGLVIIPGDATVSLATRGDLVLGGAVDPGRTRQHNTSAFSLDGTAYLGGGSGWFSLWTEHTAIDLFSAGGNLTPSTQAGELAIGSNDTPRAQLDTSPTDGRFIYPSILRAVAPGGNLYYGSSALYTGSGTGSGQKNSPYSLVLAPSPNGQLQMLAGGSIFAGGYALNQSGADSRLLPTPFAPAFEGRSDGRLLVSNLSPDGLSSLQGMGGFPLFAFGGDTLTTLGGRRDPARFYAMAGDLLGIRSGEQLNFSASGSRPGQTWYDAAAPVWMLAGRDIVNSGTQLGQATTIVPLLGGGSSSGNLFVHSDPLDISLVSAGRDILYSSFNVAGPGLLQINAGRDIRMEDKASITSLGALAPGDNRPGASIVLQAGAGASGPNYTAFVSRYLDPANQASDSASLAEQPGKVAKTYETELASWLKLRYGFSGSDEQARAYFAGLSAVEQGLFARQVYFAELRAGGLEYNQVDGPRQGSYLRGRNAIAALFPDTDVAGNPIVYQGNITLFGGAGVHTNVGGDIQMLTPGGQQVFGVEGNAPPSTAGVITQGQGNIQLYSQGSILLGQSRIMTTFGGSILGWSAEGDINAGRGSKTTVVYTPPRRVYDNWGNVTLSPSVPSTGAGIATLNPIAEVPPGDIDLIAPLGTIDAGEAGIRVSGNVNIAALQVVNAANIQTQGKSSGIPVVASVNTGALTSASSAASSATQAAEDVARQQQAASRQNMPSVFSVQVLSFGQERLAPTQDGASRAIPGYNPDSPVQVLGAGPLSDQARQQLTEEERRQLTL
>CP027656.1|AVO62275.1|2969106_2969727_+|flagellar-biosynthesis-protein
MKYLKLAGLLLVTTTLFGCATSRSVVDIDGPEVASGNGQKVVINVLDERRFEADPRSADIPSLKNGEINDKAITERAIARKRNGYGMGLGDVLLPEGVKVSTLIAKSIGAAYGKAGYQVVPSTEQAPDARTITVHVVEFWSWMSPGAFSVAVNNKSHLKVDTGSASSPVEVKTLKREGMQMITEDDWKLITESGLQAISESMAKQL
>CP027656.1|AVO58951.1|2969913_2970177_-|short-chain-dehydrogenase
MTQQYIPLTGIDCLIPCLLIDKDTPLDVLHANSTARLLAVTQVLESLARLDLKDADSADLQHLANASAILLRDSCDLLDVMGWRLQA
>CP027656.1|AVO58952.1|2970615_2972085_+|hypothetical-protein
MAFVIREGDPTTTGGKVIAGSATTFVVDQRVARIADPVWCPVCQTVGYIAEGHHTLLDTQQATAVEGGLVQCGCPSGANRLIATQNSVMSGDQPTIPLDSDYIGPAVINTQRWADAIHKGYPQNEFADAVPRDQVRGLSVAHGDIVSPPLSVQDTQHLVEPGFHIVQTPMSRAALETVLFGQVDEAVLEKFRRLNPQLSSPAKPGQLVVLSHPDNNLCTREEALLMEVAEKVSAALASMSDEEAAFMLKYRAQVESILSYGSTVLGVSTAAVGNHMDGLKRTLLDIEELHQKFFLRDGHLRSVEFFSERRKLFAQLDSNLTSITKMSIAFPDHPSLKSALGISSRSLVHRWTQAGAVGQIPGYATHIEGVSRASKILKWGGWMGTALGGGVSYVKVQDVCLAGNKEVCEKVRFTEAGSFTGGVAGGMFAGMALGTSATGAVCVAIGVPSGGIGTLACGLIVVGGGSYAAGKLGEAGGERIGEFIYEKGK
>CP027656.1|AVO58953.1|2972081_2972477_+|hypothetical-protein
MNLISSPHDFFVVLCALTFLGIFSVAGAYLYWGYTCMEEILDRFRSCTAMTGSRFYLQMGPWGRLVMVGMAAGFLAFPASYIKKGILDASEIDTFPQPLKRRLIMSHYLVWGLGGVMILSVSAMKLIECCM
>CP027656.1|AVO58954.1|2972553_2973156_+|N-acetyltransferase
MTDLKPSQPGAVDAIAYNRASLALQQEFALLQQRVYPEPDALESAEVAPLHDPVFDAFSFYICAHDRVVSYAAVVMKTIEHGGDTFYMGGLSCVMTEPDSQGQGLGLRTVAAATRCMEHSHLDIGVFTCDPPLAPFYARAGGWTIAPDVVLVGNRHDGALRSDTLGKVVLLRLFSAKAVAAASILASGVIDLGLPDGQFL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1305862 : 1383560

Pseudomonas_phage(47.17%)

tRNA,lysis,tail,holin,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO57500.1\|1305862_1307191_+\|tRNA	tRNA lysidine(34) synthetase TilS	M1I2W1	Paramecium_bursaria_Chlorella_virus	8.5e-05	24.2
AVO57501.1\|1307465_1309097_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.5
AVO57502.1\|1309102_1309948_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.7e-49	42.8
AVO57503.1\|1310105_1311395_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.2
AVO57504.1\|1311567_1311846_+	cell division protein FtsB	NA	NA	NA	NA
AVO57505.1\|1311842_1312550_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AVO57506.1\|1312711_1313608_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVO57507.1\|1313714_1314827_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.1e-29	27.2
AVO57508.1\|1314835_1315681_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AVO57509.1\|1315733_1316207_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AVO57510.1\|1316203_1317262_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AVO57511.1\|1317249_1317999_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-68	52.6
AVO57512.1\|1317998_1318676_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.9e-43	52.0
AVO57513.1\|1318885_1319719_+	LysM peptidoglycan-binding domain-containing protein	A0A0S2SXL7	Bacillus_phage	6.3e-06	33.3
AVO57514.1\|1319825_1320830_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AVO57515.1\|1321331_1321655_-	ferredoxin family protein	NA	NA	NA	NA
AVO57516.1\|1321797_1324377_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.8e-27	22.0
AVO57517.1\|1324573_1325299_+	XRE family transcriptional regulator	B5TK58	Pseudomonas_phage	1.3e-124	91.4
AVO62210.1\|1325843_1326032_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	4.5e-13	82.9
AVO57518.1\|1326040_1326622_+	DUF642 domain-containing protein	NA	NA	NA	NA
AVO57519.1\|1326724_1327072_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	7.7e-51	87.7
AVO57520.1\|1327238_1328003_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	2.6e-06	26.3
AVO62211.1\|1328270_1328453_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	4.1e-11	84.2
AVO57521.1\|1328484_1328733_+	hypothetical protein	NA	NA	NA	NA
AVO57522.1\|1328841_1329483_+	hypothetical protein	B5TK60	Pseudomonas_phage	6.2e-62	55.1
AVO57523.1\|1329724_1330249_+	hypothetical protein	NA	NA	NA	NA
AVO57524.1\|1330252_1330861_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	2.2e-48	60.4
AVO57525.1\|1330874_1331207_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
AVO57526.1\|1331203_1332199_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	2.1e-109	63.2
AVO57527.1\|1332195_1332930_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	9.0e-41	53.5
AVO57528.1\|1332926_1333463_+	hypothetical protein	B0ZSG1	Halomonas_phage	1.0e-49	58.6
AVO57529.1\|1333566_1334319_+	hypothetical protein	NA	NA	NA	NA
AVO57530.1\|1334330_1334567_+	hypothetical protein	M4NK32	Synechococcus_phage	9.7e-05	40.0
AVO57531.1\|1334656_1334878_+	hypothetical protein	NA	NA	NA	NA
AVO57532.1\|1334880_1336047_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	4.2e-125	57.2
AVO57533.1\|1336046_1336553_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	2.6e-23	35.7
AVO57534.1\|1336679_1337291_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.5e-25	36.4
AVO57535.1\|1337419_1339627_+\|tail	phage tail tape measure protein	A0A2H4JAA5	uncultured_Caudovirales_phage	7.2e-09	49.3
AVO57536.1\|1339626_1340010_+	hypothetical protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.0e-40	59.8
AVO57537.1\|1340002_1340215_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	6.9e-18	61.4
AVO57538.1\|1340224_1341238_+\|tail	phage tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	3.8e-106	56.3
AVO57539.1\|1341380_1341965_+	hypothetical protein	B5TK65	Pseudomonas_phage	6.9e-76	72.0
AVO57540.1\|1341961_1342144_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	2.5e-24	91.7
AVO57541.1\|1342143_1343640_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	1.3e-256	90.8
AVO57542.1\|1343706_1344054_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
AVO57543.1\|1344050_1344347_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	2.3e-43	94.9
AVO62212.1\|1344585_1346232_+\|tail	phage tail protein	B5TK70	Pseudomonas_phage	3.2e-46	55.3
AVO57544.1\|1346218_1347457_+	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	7.5e-181	75.5
AVO57545.1\|1347460_1348501_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	8.6e-162	82.7
AVO57546.1\|1348565_1349075_+\|plate	phage baseplate assembly protein V	B5TK73	Pseudomonas_phage	5.8e-79	89.3
AVO57547.1\|1349074_1349473_+	hypothetical protein	B5TK74	Pseudomonas_phage	7.5e-66	90.2
AVO57548.1\|1349462_1350503_+\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	2.6e-166	87.0
AVO57549.1\|1350490_1351090_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	4.2e-105	91.5
AVO57550.1\|1351101_1351956_+	hypothetical protein	B5TK77	Pseudomonas_phage	1.2e-23	76.4
AVO57551.1\|1351960_1352602_+	hypothetical protein	B5TK78	Pseudomonas_phage	6.2e-38	52.5
AVO57552.1\|1352733_1353654_+	hypothetical protein	B5TK77	Pseudomonas_phage	7.4e-24	78.3
AVO57553.1\|1353653_1354145_+	hypothetical protein	A0A291LAV4	Bordetella_phage	7.2e-10	49.3
AVO57554.1\|1354312_1355233_+\|tail	phage tail protein	B5TK81	Pseudomonas_phage	2.1e-39	40.6
AVO57555.1\|1355793_1357005_+	carbohydrate-binding protein CenC	B5TK77	Pseudomonas_phage	1.5e-21	73.9
AVO62213.1\|1357458_1357668_+	hypothetical protein	NA	NA	NA	NA
AVO57556.1\|1357713_1358277_+	lysozyme	B5TK83	Pseudomonas_phage	5.4e-86	82.3
AVO57557.1\|1358258_1358795_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	6.3e-60	70.2
AVO57558.1\|1358877_1359378_+	CinA family protein	B5TK85	Pseudomonas_phage	4.7e-73	86.7
AVO57559.1\|1359461_1360514_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	4.4e-113	63.0
AVO57560.1\|1360522_1360990_+	recombination regulator RecX	NA	NA	NA	NA
AVO57561.1\|1361035_1362151_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
AVO57562.1\|1362634_1362829_+	hypothetical protein	NA	NA	NA	NA
AVO57563.1\|1362830_1363253_-	hypothetical protein	NA	NA	NA	NA
AVO57564.1\|1363442_1364153_+	DTW domain-containing protein	NA	NA	NA	NA
AVO57565.1\|1364486_1365137_+	DNA-binding response regulator	NA	NA	NA	NA
AVO57566.1\|1365213_1365576_+	diacylglycerol kinase	NA	NA	NA	NA
AVO57567.1\|1365572_1366499_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVO57568.1\|1366634_1367414_+	ferredoxin--NADP reductase	NA	NA	NA	NA
AVO57569.1\|1367486_1368182_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AVO57570.1\|1368268_1369039_-	KR domain-containing protein	NA	NA	NA	NA
AVO57571.1\|1369172_1369634_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	8.5e-37	51.3
AVO57572.1\|1369700_1370411_-	RNA-binding protein	NA	NA	NA	NA
AVO57573.1\|1370493_1370967_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AVO57574.1\|1371073_1372411_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AVO57575.1\|1372409_1372598_+	hypothetical protein	NA	NA	NA	NA
AVO57576.1\|1372742_1374644_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	2.2e-78	34.9
AVO57577.1\|1374848_1376144_-	virulence factor family protein	NA	NA	NA	NA
AVO57578.1\|1376143_1378792_-	hypothetical protein	NA	NA	NA	NA
AVO57579.1\|1379731_1380796_+	DNA polymerase IV	NA	NA	NA	NA
AVO57580.1\|1380873_1381827_-	hypothetical protein	NA	NA	NA	NA
AVO57581.1\|1381844_1383560_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

2408202 : 2460704

uncultured_Caudovirales_phage(40.0%)

tRNA,holin,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO58466.1\|2408202_2408898_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AVO58467.1\|2408926_2411128_-	OsmC domain/YcaO domain-containing protein	NA	NA	NA	NA
AVO58468.1\|2411375_2411750_-	hypothetical protein	NA	NA	NA	NA
AVO58469.1\|2411764_2412385_-	hypothetical protein	NA	NA	NA	NA
AVO62257.1\|2412442_2412718_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AVO58470.1\|2412748_2413012_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AVO62258.1\|2413016_2413277_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AVO58471.1\|2413307_2413568_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AVO58472.1\|2413572_2413830_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AVO58473.1\|2413834_2415154_-	pyocin	NA	NA	NA	NA
AVO58474.1\|2415389_2416613_+	MFS transporter	NA	NA	NA	NA
AVO58475.1\|2416619_2417114_-	thioesterase	NA	NA	NA	NA
AVO58476.1\|2417150_2417579_-	hypothetical protein	NA	NA	NA	NA
AVO58477.1\|2417727_2418681_-	EamA family transporter	NA	NA	NA	NA
AVO58478.1\|2418834_2419737_+	transcriptional regulator	NA	NA	NA	NA
AVO58479.1\|2419841_2420171_+	hypothetical protein	NA	NA	NA	NA
AVO58480.1\|2420353_2420533_+	hypothetical protein	NA	NA	NA	NA
AVO58481.1\|2420581_2421478_-	EamA family transporter	NA	NA	NA	NA
AVO58482.1\|2421605_2422940_+	GntR family transcriptional regulator	NA	NA	NA	NA
AVO58483.1\|2422977_2424606_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.7e-58	41.3
AVO58484.1\|2424870_2426316_-	sodium-independent anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.5e-90	42.3
AVO58485.1\|2426498_2426858_+	hypothetical protein	NA	NA	NA	NA
AVO58486.1\|2427027_2427633_+	SCO family protein	NA	NA	NA	NA
AVO58487.1\|2427632_2428124_+	transporter	NA	NA	NA	NA
AVO58488.1\|2428165_2428360_+	DUF1289 domain-containing protein	NA	NA	NA	NA
AVO58489.1\|2428391_2429339_-	DNA-binding transcriptional regulator DsdC	NA	NA	NA	NA
AVO58490.1\|2429363_2430716_-	D-serine ammonia-lyase	NA	NA	NA	NA
AVO58491.1\|2430741_2432082_-	permease DsdX	NA	NA	NA	NA
AVO58492.1\|2432298_2432703_-	RidA family protein	NA	NA	NA	NA
AVO58493.1\|2432849_2433776_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVO58494.1\|2434063_2435482_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
AVO58495.1\|2435533_2436433_-	dienelactone hydrolase	NA	NA	NA	NA
AVO58496.1\|2436618_2437407_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
AVO58497.1\|2437471_2438338_+	AraC family transcriptional regulator	NA	NA	NA	NA
AVO62259.1\|2438496_2439756_+	DUF1479 domain-containing protein	NA	NA	NA	NA
AVO58498.1\|2439774_2440227_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
AVO58499.1\|2440377_2441277_+	thioredoxin reductase	NA	NA	NA	NA
AVO58500.1\|2441301_2442243_-	methyltransferase	NA	NA	NA	NA
AVO58501.1\|2442517_2442904_-	hypothetical protein	NA	NA	NA	NA
AVO58502.1\|2443717_2443879_+	DUF2986 domain-containing protein	NA	NA	NA	NA
AVO58503.1\|2443959_2444766_-	murein transglycosylase	A0A0S2SXL7	Bacillus_phage	7.6e-25	50.4
AVO58504.1\|2445469_2445760_-	hypothetical protein	NA	NA	NA	NA
AVO58505.1\|2446166_2446547_+	reactive intermediate/imine deaminase	NA	NA	NA	NA
AVO58506.1\|2446671_2448660_+	U32 family peptidase	Q6DW11	Phage_TP	3.0e-22	28.2
AVO58507.1\|2448791_2449337_-	thioesterase	NA	NA	NA	NA
AVO58508.1\|2449443_2450406_+	transcriptional regulator	NA	NA	NA	NA
AVO58509.1\|2450485_2451886_-	multidrug transporter	NA	NA	NA	NA
AVO58510.1\|2451891_2455032_-	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.7e-59	24.1
AVO58511.1\|2455059_2456223_-	MexC family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AVO58512.1\|2456394_2456955_+	transcriptional regulator	NA	NA	NA	NA
AVO58513.1\|2457069_2457909_+	AraC family transcriptional regulator	NA	NA	NA	NA
AVO58514.1\|2458002_2458413_+	hypothetical protein	NA	NA	NA	NA
AVO58515.1\|2458614_2459055_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AVO58516.1\|2459068_2459467_-	hypothetical protein	NA	NA	NA	NA
AVO58517.1\|2459582_2459948_-	DUF2784 domain-containing protein	NA	NA	NA	NA
AVO58518.1\|2459984_2460704_-\|holin	phosphatidylcholine synthase	NA	NA	NA	NA

DBSCAN-SWA_3

4231643 : 4237895

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO59909.1\|4231643_4232036_+	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.5e-58	83.8
AVO59910.1\|4232037_4232400_+	sulfurtransferase TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-44	75.0
AVO59911.1\|4232399_4232699_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.2e-33	71.7
AVO59912.1\|4232695_4233031_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-46	82.0
AVO59913.1\|4233027_4234029_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	5.5e-166	84.8
AVO59914.1\|4234118_4235120_+	glutathione-dependent reductase	NA	NA	NA	NA
AVO59915.1\|4235219_4236614_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AVO59916.1\|4236614_4237895_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-101	55.1

DBSCAN-SWA_4

5097470 : 5158429

Burkholderia_phage(30.77%)

integrase,head,tRNA,lysis,terminase,transposase,tail,holin,plate

attL 5100993:5101008|attR 5133377:5133392

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO60604.1\|5097470_5100095_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.8e-76	38.5
AVO60605.1\|5100241_5101246_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
5100993:5101008	attL	NA	NA	NA	NA
AVO60606.1\|5101751_5102258_+	6,7-dimethyl-8-ribityllumazine synthase	NA	NA	NA	NA
AVO60607.1\|5102440_5103451_-	succinylglutamate desuccinylase	NA	NA	NA	NA
AVO60608.1\|5103464_5103752_-	topoisomerase II	NA	NA	NA	NA
AVO60609.1\|5103815_5105162_-	N-succinylarginine dihydrolase	NA	NA	NA	NA
AVO60610.1\|5105330_5106797_-	succinylglutamate-semialdehyde dehydrogenase	NA	NA	NA	NA
AVO60611.1\|5106796_5107822_-	arginine N-succinyltransferase	NA	NA	NA	NA
AVO60612.1\|5107876_5108896_-	arginine/ornithine succinyltransferase subunit alpha	NA	NA	NA	NA
AVO60613.1\|5109029_5110250_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	2.0e-21	24.4
AVO60614.1\|5110575_5111556_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVO60615.1\|5111670_5112435_-	histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein HisP	W8CYL7	Bacillus_phage	2.8e-08	29.3
AVO60616.1\|5112458_5113571_-	peptidase M14	NA	NA	NA	NA
AVO60617.1\|5113572_5114271_-	amino acid ABC transporter permease	NA	NA	NA	NA
AVO60618.1\|5114267_5114957_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
AVO60619.1\|5115048_5115825_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVO60620.1\|5116405_5118361_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.9e-77	36.4
AVO60621.1\|5118773_5119037_+	DUF2790 domain-containing protein	NA	NA	NA	NA
AVO60622.1\|5119910_5121158_+	ribonucleotide-diphosphate reductase subunit beta	U5Q1G6	Bacillus_phage	1.4e-30	26.8
AVO60623.1\|5121409_5121781_-	DNA-binding protein	NA	NA	NA	NA
AVO62351.1\|5121777_5122230_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	5.2e-31	56.6
AVO60624.1\|5122226_5122445_-	hypothetical protein	NA	NA	NA	NA
AVO62352.1\|5122446_5122809_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AVO60625.1\|5122834_5123452_-	DUF3164 domain-containing protein	Q5ZR10	Pseudomonas_phage	5.3e-42	38.1
AVO60626.1\|5123671_5123989_-	hypothetical protein	J9SNT1	Pseudomonas_phage	2.5e-11	41.6
AVO60627.1\|5123990_5125172_-\|transposase	transposase	Q6QIE1	Burkholderia_phage	8.3e-129	62.6
AVO60628.1\|5125171_5126947_-\|integrase	integrase	A0A0S4L2U5	Pseudomonas_phage	3.8e-194	59.2
AVO60629.1\|5126950_5127889_-	hypothetical protein	J9RW58	Pseudomonas_phage	4.5e-77	55.3
AVO60630.1\|5127899_5128202_-	IclR family transcriptional regulator	Q5ZR02	Pseudomonas_phage	9.8e-26	64.9
AVO60631.1\|5128198_5128678_-	hypothetical protein	Q6QID6	Burkholderia_phage	8.5e-56	65.2
AVO60632.1\|5129066_5129279_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.2e-23	76.8
AVO60633.1\|5129364_5129781_+	transcriptional regulator	Q6QID2	Burkholderia_phage	4.6e-26	55.0
AVO60634.1\|5129784_5130375_+	hypothetical protein	NA	NA	NA	NA
AVO60635.1\|5130798_5131182_+	hypothetical protein	NA	NA	NA	NA
AVO60636.1\|5131320_5131788_+	structural protein	J9Q7Y7	Salmonella_phage	1.3e-37	53.3
AVO60637.1\|5131784_5132024_+	hypothetical protein	NA	NA	NA	NA
AVO60638.1\|5132204_5132804_+\|lysis	lysis protein	J9SVX5	Pseudomonas_phage	1.1e-39	50.8
AVO60639.1\|5132810_5133029_+	DksA protein	NA	NA	NA	NA
AVO60640.1\|5133025_5133331_+	DUF2730 domain-containing protein	J9STR5	Pseudomonas_phage	7.8e-15	43.7
AVO60641.1\|5133327_5133621_+	hypothetical protein	J9SNG3	Pseudomonas_phage	1.2e-23	61.2
5133377:5133392	attR	NA	NA	NA	NA
AVO60642.1\|5133623_5134172_+\|terminase	small terminase subunit	J9SH37	Pseudomonas_phage	7.2e-27	44.5
AVO60643.1\|5134168_5135788_+	hypothetical protein	A0A219VH72	Ochrobactrum_phage	6.7e-113	44.8
AVO60644.1\|5135784_5137293_+	DUF935 domain-containing protein	Q6QIC0	Burkholderia_phage	8.3e-158	57.4
AVO60645.1\|5137292_5138132_+\|head	phage head morphogenesis protein	A0A1C6ZDL9	Pseudomonas_phage	1.4e-85	60.0
AVO60646.1\|5138133_5138610_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.5e-20	40.1
AVO60647.1\|5138743_5139556_+	hypothetical protein	NA	NA	NA	NA
AVO60648.1\|5139653_5140769_+	peptidase	A4JWJ9	Burkholderia_virus	6.7e-88	46.8
AVO60649.1\|5140781_5141705_+	hypothetical protein	A4JWK0	Burkholderia_virus	6.2e-79	48.4
AVO60650.1\|5141752_5142007_+	hypothetical protein	NA	NA	NA	NA
AVO60651.1\|5142212_5142545_+	DUF2190 domain-containing protein	Q6QIB4	Burkholderia_phage	3.7e-26	59.1
AVO60652.1\|5142553_5142988_+	DUF1320 domain-containing protein	Q6QIB3	Burkholderia_phage	4.8e-42	56.7
AVO60653.1\|5142984_5143467_+	hypothetical protein	NA	NA	NA	NA
AVO60654.1\|5143463_5143697_+	hypothetical protein	NA	NA	NA	NA
AVO60655.1\|5143702_5145127_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	4.4e-177	64.9
AVO60656.1\|5145127_5145652_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	3.9e-46	50.0
AVO60657.1\|5146151_5146466_+\|tail	phage tail assembly protein	A4JWK7	Burkholderia_virus	1.9e-11	39.8
AVO60658.1\|5146650_5149242_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.8e-142	37.7
AVO60659.1\|5149241_5150123_+	hypothetical protein	A0A067ZI88	Vibrio_phage	4.2e-08	34.9
AVO60660.1\|5150122_5150329_+	hypothetical protein	Q6QIA3	Burkholderia_phage	2.1e-16	61.4
AVO60661.1\|5150316_5151432_+	late control protein D	Q6QIA2	Burkholderia_phage	9.8e-63	38.1
AVO60662.1\|5151431_5151983_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
AVO60663.1\|5151983_5152610_-	hypothetical protein	M1PSB6	Streptococcus_phage	1.8e-26	33.2
AVO60664.1\|5152716_5153094_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.5e-34	61.2
AVO60665.1\|5153077_5154199_+\|plate	baseplate protein	A4JWL6	Burkholderia_virus	6.8e-88	48.8
AVO62353.1\|5154191_5154773_+\|tail	phage tail protein	A4JWL7	Burkholderia_virus	5.8e-51	55.2
AVO60666.1\|5155800_5156523_+	hypothetical protein	NA	NA	NA	NA
AVO60667.1\|5156718_5157432_-	acid phosphatase	NA	NA	NA	NA
AVO60668.1\|5157817_5158429_-\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_5

6271179 : 6323904

Burkholderia_phage(28.57%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO61682.1\|6271179_6271680_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
AVO61683.1\|6271909_6272797_+	acyltransferase	NA	NA	NA	NA
AVO61684.1\|6272797_6273370_-	hypothetical protein	NA	NA	NA	NA
AVO61685.1\|6273734_6274934_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	6.5e-12	29.3
AVO61686.1\|6275071_6275929_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AVO61687.1\|6276035_6276668_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
AVO61688.1\|6276801_6279819_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
AVO61689.1\|6279815_6280145_-	sarcosine oxidase subunit delta family protein	NA	NA	NA	NA
AVO61690.1\|6280159_6281410_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
AVO61691.1\|6281433_6282687_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.1e-99	53.0
AVO61692.1\|6283126_6283870_-	conjugal transfer protein TraX	NA	NA	NA	NA
AVO61693.1\|6284094_6285135_+	low specificity L-threonine aldolase	NA	NA	NA	NA
AVO61694.1\|6285303_6286128_+	short chain dehydrogenase	NA	NA	NA	NA
AVO61695.1\|6286236_6287337_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AVO61696.1\|6287620_6288916_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
AVO61697.1\|6289768_6290539_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AVO61698.1\|6290554_6291775_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
AVO61699.1\|6291774_6293724_-	(Fe-S)-binding protein	NA	NA	NA	NA
AVO61700.1\|6293887_6295948_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
AVO61701.1\|6295963_6296494_-	hydrocarbon binding protein	NA	NA	NA	NA
AVO61702.1\|6296570_6297548_-	membrane dipeptidase	NA	NA	NA	NA
AVO62375.1\|6297573_6297759_+	hypothetical protein	NA	NA	NA	NA
AVO61703.1\|6297775_6298177_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AVO61704.1\|6298410_6298665_+	cytotoxic translational repressor of toxin-antitoxin stability system	A0A1S5NR91	Burkholderia_phage	2.2e-23	64.3
AVO61705.1\|6298603_6298972_+	XRE family transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	5.0e-32	70.1
AVO61706.1\|6299006_6299423_+	DUF3010 domain-containing protein	NA	NA	NA	NA
AVO61707.1\|6299460_6300357_+	FRG domain-containing protein	NA	NA	NA	NA
AVO61708.1\|6300376_6301336_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AVO61709.1\|6301529_6302474_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AVO61710.1\|6302546_6303434_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
AVO61711.1\|6303587_6304553_+	carnitine 3-dehydrogenase	NA	NA	NA	NA
AVO61712.1\|6304702_6305179_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
AVO61713.1\|6305203_6306367_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
AVO61714.1\|6306744_6307005_+	hypothetical protein	NA	NA	NA	NA
AVO61715.1\|6307066_6307513_+	aminoglycoside 6'-acetyltransferase	NA	NA	NA	NA
AVO61716.1\|6307513_6308608_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AVO61717.1\|6309168_6310545_-	L-serine ammonia-lyase	NA	NA	NA	NA
AVO61718.1\|6310969_6311926_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
AVO61719.1\|6311996_6312842_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AVO61720.1\|6312838_6314017_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.9e-26	37.6
AVO61721.1\|6314251_6316249_-	beta-aspartyl-peptidase	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.3
AVO62376.1\|6316674_6317268_+	transcriptional regulator BetI	NA	NA	NA	NA
AVO61722.1\|6317378_6318851_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AVO61723.1\|6319009_6320713_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	5.0e-50	30.1
AVO62377.1\|6320866_6321109_-	hypothetical protein	NA	NA	NA	NA
AVO61724.1\|6321124_6322567_+	peptidase C69	NA	NA	NA	NA
AVO61725.1\|6322566_6323904_+\|protease	Zn-dependent protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage