CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027856	Aeromonas rivipollensis strain KN-Mc-11N1 chromosome, complete genome	22 crisprs	csa3,DinG,WYL,DEDDh,cas3	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027856_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_1

91856-91955

Orphan

Consensus_repeat	Method
GAAACTCGCTCATATCACCTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_1

>merge|CP027856|1|91856-91955|CRISPRCasFinder
GAAACTCGCTCATATCACCTCCAGAAATGTTGAGCCGTGCAAGGTGCCATAGCATTTCGATTCCAGCGTATTGATCCGAAATTCGCTCATATCACCTCCA

>CP027856|1|1|91856-91955|CRISPRCasFinder
GAAACTCGCTCATATCACCTCCA	GAAATGTTGAGCCGTGCAAGGTGCCATAGCATTTCGATTCCAGCGTATTGATCC
GAAATTCGCTCATATCACCTCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP91848.1\|81982_82675_-\|aspartate-racemase	unknown	unknown	gnl\|CDD\|224707
CP027856.1\|AVP91852.1\|85577_86042_+\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP91859.1\|93517_94141_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
CP027856.1\|AVP91850.1\|83461_84058_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP027856.1\|AVP91864.1\|96365_97370_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
CP027856.1\|AVP91851.1\|84174_85548_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
CP027856.1\|AVP91860.1\|94451_94928_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP027856.1\|AVP91855.1\|89407_90247_-\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
CP027856.1\|AVP91856.1\|90445_91009_+\|DNA-repair-protein	unknown	unknown	gnl\|CDD\|378521
CP027856.1\|AVP91858.1\|92111_93350_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
CP027856.1\|AVP91865.1\|97784_98225_+\|ADP-ribose-pyrophosphatase	unknown	unknown	gnl\|CDD\|240034
CP027856.1\|AVP91862.1\|95484_95715_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP91847.1\|80517_81732_-\|DUF4432-domain-containing-protein	unknown	unknown	gnl\|CDD\|379620
CP027856.1\|AVP91861.1\|95022_95340_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225653
CP027856.1\|AVP91854.1\|87881_89195_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
CP027856.1\|AVP91863.1\|95744_96239_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP027856.1\|AVP91866.1\|98351_99491_+\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|273350
CP027856.1\|AVP91853.1\|86147_87461_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
CP027856.1\|AVP91849.1\|82768_83359_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP027856.1\|AVP91867.1\|99561_99954_-\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|376583

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP91848.1\|81982_82675_-\|aspartate-racemase	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	1.5155e-108
CP027856.1\|AVP91865.1\|97784_98225_+\|ADP-ribose-pyrophosphatase	gnl\|CDD\|240034	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.44404e-50
CP027856.1\|AVP91859.1\|93517_94141_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.10236e-55
CP027856.1\|AVP91850.1\|83461_84058_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.27836e-25
CP027856.1\|AVP91864.1\|96365_97370_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	2.64609e-166
CP027856.1\|AVP91851.1\|84174_85548_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.06609e-99
CP027856.1\|AVP91860.1\|94451_94928_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.14903e-47
CP027856.1\|AVP91855.1\|89407_90247_-\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	1.02692e-36
CP027856.1\|AVP91856.1\|90445_91009_+\|DNA-repair-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	1.11133e-24
CP027856.1\|AVP91858.1\|92111_93350_-\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.73566e-40
CP027856.1\|AVP91847.1\|80517_81732_-\|DUF4432-domain-containing-protein	gnl\|CDD\|379620	pfam14486, DUF4432, Domain of unknown function (DUF4432).	5.57721e-148
CP027856.1\|AVP91861.1\|95022_95340_-\|hypothetical-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	0.000215846
CP027856.1\|AVP91854.1\|87881_89195_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	5.4573e-167
CP027856.1\|AVP91863.1\|95744_96239_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.51605e-22
CP027856.1\|AVP91866.1\|98351_99491_+\|chorismate-binding-protein	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	9.31092e-66
CP027856.1\|AVP91853.1\|86147_87461_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.24592e-167
CP027856.1\|AVP91849.1\|82768_83359_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.05824e-27
CP027856.1\|AVP91867.1\|99561_99954_-\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	1.04755e-72

>CP027856.1|AVP91856.1|90445_91009_+|DNA-repair-protein
MSPKILLLTLPLLLAGCSSLSEEECRAMSWYNQGYQDGEQGKTRTATRDYKQTCGEYGLRVDEDEWQRGYAKGLELYCIPELAYSKGREGNEYLGVCPNDTSFLTQFERGRKEFLLEQRLGELQQELERTERTIYQLDQQIRGESDSKQRDYYRAQRERAIRHYEGVRRDYNRIRFPDRVIQFSFGS
>CP027856.1|AVP91855.1|89407_90247_-|isopenicillin-N-synthase-family-oxygenase
MKVLTVDYRSPDAAERFTESLRTTGFGVLTHHPIPKELVQSIYDNWYRFFMSEQKQDFLFNRETQDGYFPPSVSEVAKGNTQKDIKEYFHLYPWGQMPEELRAQAMEYYRLANDLAAELLSWVEQYTPADIAAHYSCPLSSMIEESQKTLLRVLHYPPFDGTEAPGAIRAAAHEDINLLTILPAASEPGLQVKGSDGEWMDVPCDFGTLIINIGDMLQEASHGYYPSTTHRVINPTGGSVSKSRISLPLFLHPRPDVVLSERHTAHSYLMERLRELGVI
>CP027856.1|AVP91854.1|87881_89195_-|sodium-dependent-transporter
MKQSQWSSRLGYILAAAGSAVGLGAIWKFPYVTAANGGGAFLLVFLLFSFTLGVAVLMGETLLGSLTRRGVVGAFDELMGKRWRWVGAMGLLCSLLIFSFYSVVGGWTLGYTGMALAGSLQQGDGAALTARFNDYVGDPLWPVLTHLLFAALTWWFVQGGVQKGVERTLRWMMPALFIMILLLVAFGLTLPNAMAGVRHFLMPDFSKLGMSGVLDAMGLAFFSLSIGLGIHTTYGAYLPSSEGVGRSSLWVVLLASLIAVLAGLMIFPVLAATGIDPASGPGLTFMTMPAVFQQLPFGQGLAVVFFALLVVAALSSAISLLEHLQCFVCESLGWSRRAACSLITALVMAGGVPVSLSFGPWAQVTLFGKNIFELLDFVTSNLMMPLFGLALTLLLGWQLGLRALPQGLAPHWRALLMGCWRWLAPLLIGGILVRGLL
>CP027856.1|AVP91853.1|86147_87461_-|sodium-dependent-transporter
MSQVQWSSRLGHVLAAAGTAIGLGAIWKFPYVTATNGGGAFLLVFLLFSFTLGVAVLVGETLLGSRSQRGVLGAFHRLVGPNWRWMGYMGILCGFFIYSFYSVVGGWTVGYAALAVMGKLNLGEGSALTALFNGYVSHPWWPVLTHLVFAGLTWWFVQGGIQKGVERALRWMMPALFVMMLLLVGVGLSMPGAMAGVRQLLLPDFSMLTGQSVLDALGLAFFSLSIGLGVHTTYGAYLPNSEGVLRSGVWVVTLASLISVLAGLMIFPALASTGIDPTAGPGLTFMTMPAVFSHLPFGQGLGVVFFLLLLVAALSSSISMLEHLVRFTCEEWGWSRRGACRVLTLLIMASGIPVSLSFGPWADYTLFGKTIFDLLDYLTSNLMMPLFGLVLTLLLGWRLGESILPEGLSPALRLCLLWCWRLVAPLLIAGILVRGLI
>CP027856.1|AVP91852.1|85577_86042_+|hypothetical-protein
MLPVRPALLLITLLLGGCASPAHQQLGQALSGLEGELQRLEEELAAMNGLHYQKAIDAPLALRRYLSAPSPTAEGLVPAQSQLQDGPLLRYDYRLPASMTRLPTDNPCLRYEFELRHLGRLGQLELAWQGKTGAGELLIQQRDCPFSAKGPGLQ
>CP027856.1|AVP91851.1|84174_85548_+|GntR-family-transcriptional-regulator
MTIWTPDLTPFEGPLYLKLVKAIEQAIADGALPPQTRLPTHRALADRLGVTVGTITRAYTEAERRGLLAARVGHGTWVRAAADPANEWVIRNEDNQRIELWQNLPVQLDRAAIIKPMLTELADGDLNGLLGYDKEAGRAPQRQLFVDWLAEQGIRGSEERLLFSHGAQHGIMLALLATGCVGETLFCEGLSYPGMLGNARQLKNQVMGLAMDEEGLIPAALEAACRQRRAKLLYLTPTLQNPTTATMSLARREEIVAIARRHDLLIVEDDVNGLLPEVSLPPLVNLAPERVIYLGSLAKIACGGLRVGFVLAPPALRNGFAQAMRLSSWMVSPLLIELACKLVSQHQIMPLIEQQRRVLARRGELLRHLLPGARWQPGSMHAWLPLPEPWRSQEFAEAANALDVGVASGEHFAAGQFAAPQGVRLSLSQPATDARVAEGLERLAGLLRAAPPTNPLL
>CP027856.1|AVP91850.1|83461_84058_-|LysE-family-translocator
MTIEWYATLFGFALLTCGTPGPNNLMLTASGANFGVRRTLPHLIGVVVGQPVLQLVLALGFYPLFERWPLLKLSLQVLGSLYLLWLAWRIAVAGAPGDPARRARPLTLLEGLGFQFLNPKAWMMGISAISLFSLPGSDYWASMWGIMSVFPMAGLPVCFAWVLFGHQLSRWINSDRGWRRLNGSLGALTALCVVMLWY
>CP027856.1|AVP91849.1|82768_83359_-|LysE-family-translocator
MDLNWLFPLAGFALITCGTPGPNNMLLTSAGAAQGFRRSIPLLVGVVGGINLMILATALGLGVVFEKVPLLHDGFKLVGSAYLLWLAWKVATASGPADGSRPLIPAHQGAMLQLLNPKAWMMALSAISGFTLAGEAYWPSAGWVLGIFFVTGLYTGAFWVLFGAQVRRLIRTAKGWRRFNLGMGIATAACVLMIWI
>CP027856.1|AVP91848.1|81982_82675_-|aspartate-racemase
MKCIGLLGGMSWESTVSYYQALNRGVRARLGGLHSARVLLNSVDFAEIERLQHAGDWPATARLLAAEARALQAGGADFLMIGTNTMHKVAPEIAAAIEIPLLHIADATARRLQADGVTRVGLLGTRFTMEQDFYKGRLQELFGLEVLVPPAAERERVHSIIYDELCLGQIRESSRAEYLAIIADLARAGAQAVILGCTEIALLVGDARAAVPLYDTTAIHADAAVAWALE
>CP027856.1|AVP91847.1|80517_81732_-|DUF4432-domain-containing-protein
MLKRLSIAVLLALGASSGQAAEFLLTDSQQGLDVGDWKISSDKLGIKSPVPFSIEKKRLHGGRQEGVDLLIVDNGVMKITLVPTRGMGIKEVKGADVRLGWDSPVKEVVNPAFIDLESRAGLGWLDGFNEMLVRCGYEWTGHPGVDDDGRLKSLHGRVQNIPASVVSVTVDEEPPYAIHVRGRVDERTFKMSELVTWTQLSVVPGQAEFALQDKLTNHADYENEYQIIYHGNFGAPILEEGARVSTPVKQISPFNDYAKAGLKGWQTYLGPTKGFDEMVFNLVPYSDAEGNTLAVLNNKAGNVGVAVGYNTHQLPVLTLWKNTDTRAQGYVTGIEPGTSYAYSTKYQRPLGLVPRIQPGETKTFDLTYRLLRNGEEVKQALAQVEKIQAGRPTELREQPLVKLP
>CP027856.1|AVP91858.1|92111_93350_-|MFS-transporter
MEGIKGQATLWVLVMTVTLAVAGFSLPSPVLAPLMLDPAQGMLTPQASDWSRKLWLGVIMGLYPLFQLLGAPWLGKLSDRHGRKPVLTLCLIGVLAGYVLMALGIAWRSLPLLLLSRVVEGFFNGDIAIVQAMAADMSTTRTKARNFARINIGMNLGWVLGPMIGGYAAVVSGDYSLAAWLAVAMTVGNLLLVLWLLPNRPPVPAEQELASLSTRQLLLQPRLLPYFVLTLLSYGAVQLYFTYFNVWLVERLAWDPVQLAQAAVLVSVPMMLGSWLGEQLARHWRGSSLGIVGHLVMAAGMLMFILPTQWWGLALTFIPAGIGMSLGELATSVAISNRSHASQQGQAMGIYRGLAVGSEILAVVLGSLALLAGTEWPFYLAALCGVICALGFYGLRRRADRRSAVAACAEPG
>CP027856.1|AVP91859.1|93517_94141_+|MarR-family-transcriptional-regulator
MNASTDKILYLLKTHGPQSAAALGEQLQMTSMGARQHLTALEADGWVGFSDEARGRGRPIRLWHLTDQAWQRFPDTHSELTLQLIDDVQQLFGESGLDQLIARREQQMLSRYQARLTQPALADRLTALKELRSREGYMADMSQEEDGSWLWWESHCPICAAARACRGFCRSELALFRQLLAPARVEREQYLLDGDRRCLYRIRPPQA
>CP027856.1|AVP91860.1|94451_94928_+|Lrp/AsnC-family-transcriptional-regulator
MLKLDRIDRHILELMQENGRISNLELAELVGLSPSPCSRRVKALEDAGLIDTHVTLLNARQLGLTLTAYIHISMDRHTPERFENFDRAIQDLPEVLECDLITGNDADYQLKVVVRDMEHYQHFLLDKLTHISGVTGVRSSFVLRRIKHKTALPLNHLG
>CP027856.1|AVP91861.1|95022_95340_-|hypothetical-protein
MQSSIVGLSILWGLASFGVQGDFIESRDSVAPSWQAESRVEMEGYLIESLGEDRWVFDNGSESLLVSLPEGQWVSEGERLRLSGEPQQEQAGWLLQVQDVSQVGV
>CP027856.1|AVP91862.1|95484_95715_-|hypothetical-protein
MKPWLPLFALLLSGCAGGPHSPSELQIDDADAWQALCKDGVRVRAVTDEGICVDHRGLAMWTNKPRAVRMAEEAAK
>CP027856.1|AVP91863.1|95744_96239_-|MarR-family-transcriptional-regulator
MCANYSDLSCPGVYWPQSSARCPMSELKKQVCFALYSASNAVMRAYRPLLDKLDLTYTQYLVMLSLWARDEVSLKEIGQETGLDAGTLTPIVKRLESKGWLTRTVSSEDERQKCIRLTEAGRQLQQGVRECCLADNLRNQVDLADAELAELKRLCDRVAAQLGR
>CP027856.1|AVP91864.1|96365_97370_+|NADP-dependent-oxidoreductase
MTPISHQIQLLRRPTGLPAQSDFILKEVPLPALQEGEVQVANQWLSVDPYMRGRMSEAKSYVPPFPLNGPLDGGAIGTVLASRHPDFKAGDRVSSMLGWRDAFVAKGEQLTRLPATALPSQLFLGALGMPGMTAWAGLHKVARLQAGETLLVSAASGAVGTMAVQLAKRAGARVIGSTGSADKVAYLKTLGADAVINYRETPDLDAELARLAPEGIQVYFENVGGAMLDAALNNMALHGRIVLCGLIEQYNSNGEAKGPRNLSQMIRKRILMQGLLVSDHWQHYGDFLAEAIPAFEAGALQAEETISEGLASMPQAFIGLFEGRNTGKMLVKLG
>CP027856.1|AVP91865.1|97784_98225_+|ADP-ribose-pyrophosphatase
MSTPYPRVGVGVILVNHQGQVLLGKRKGSHAPYWSIAGGHLELGESFESAAIREVAEETGFLITNPSVIAVTNNLDTWRESGLHYISVTLLAEVEGEAQLLEPDKCEGWVWCDPRALPEPHFDASRQSIACWLAGRCYLPQPGQPT
>CP027856.1|AVP91866.1|98351_99491_+|chorismate-binding-protein
MGQVFLQFLWLGCISFGGPAAHIGYFQRTFVQRLGWLSQAEFAQLLALCQLLPGPASSQLGFAIGRHRAGLGGALAAFIGFTLPSFLLLLVAAIGVGQLGNNLWLDGALHGLKLLALVVVADAVLTMSRQFCKTVLQQGVMVATAAALWWQPGLLTQLGMLLGAALLCAQREAVGASPATPQARRVPHWPTLLLFALLFVGLPLLAQDPASQLVADFYRAGSLVFGGGHVVLPLLQESVGHSLSQQQFLTGYGLAQLVPGPMFTLASYLGAQLSPATPLAGALLATLALFLPGFLLLWALGPCWQSWLAHPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPADLALAAVAFYLLRVIRLPILALAALLVGANQLLI
>CP027856.1|AVP91867.1|99561_99954_-|peptide-methionine-(R)-S-oxide-reductase
MKGNNPEQWRSKLSAEQFHVCWEKGTERPYSGALLHNRKSGDYLCVCCKSVLFHADAKFDSGCGWPSFDRAIEGTVTYTEDRSHGMARVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLEFEPDTDA

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Crispr_ID: CP027856_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_2

98187-98268

Orphan

Consensus_repeat	Method
GGGCGCTGCTATCTGCCGCAACCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_2

>merge|CP027856|2|98187-98268|CRISPRCasFinder
GGGCGCTGCTATCTGCCGCAACCAGGCCAGCCGACCTAATCCCATCGCCTGCTGGTTGGGCGCTGCTATCTGCCGCTACCAG

>CP027856|2|2|98187-98268|CRISPRCasFinder
GGGCGCTGCTATCTGCCGCAACCAG	GCCAGCCGACCTAATCCCATCGCCTGCTGGTT
GGGCGCTGCTATCTGCCGCTACCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP91872.1\|108050_108917_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
CP027856.1\|AVP91862.1\|95484_95715_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP91874.1\|112779_113304_-\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744
CP027856.1\|AVP91860.1\|94451_94928_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP027856.1\|AVP91859.1\|93517_94141_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
CP027856.1\|AVP91855.1\|89407_90247_-\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
CP027856.1\|AVP91864.1\|96365_97370_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
CP027856.1\|AVP95393.1\|109005_110040_-\|quinolinate-synthase	unknown	unknown	gnl\|CDD\|236489
CP027856.1\|AVP91856.1\|90445_91009_+\|DNA-repair-protein	unknown	unknown	gnl\|CDD\|378521
CP027856.1\|AVP91857.1\|91046_91868_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523
CP027856.1\|AVP91871.1\|106946_107942_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
CP027856.1\|AVP91870.1\|104411_106601_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831
CP027856.1\|AVP91866.1\|98351_99491_+\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|273350
CP027856.1\|AVP91861.1\|95022_95340_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225653
CP027856.1\|AVP91858.1\|92111_93350_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
CP027856.1\|AVP91863.1\|95744_96239_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP027856.1\|AVP91873.1\|111814_112630_-\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|182745
CP027856.1\|AVP91869.1\|102151_104329_-\|1,4-alpha-glucan-branching-enzyme	unknown	unknown	gnl\|CDD\|235445
CP027856.1\|AVP91868.1\|100010_102152_-\|glycogen-debranching-enzyme-GlgX	unknown	unknown	gnl\|CDD\|131155
CP027856.1\|AVP91867.1\|99561_99954_-\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|376583

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP91872.1\|108050_108917_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	8.44296e-115
CP027856.1\|AVP91874.1\|112779_113304_-\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	6.18448e-77
CP027856.1\|AVP91860.1\|94451_94928_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.14903e-47
CP027856.1\|AVP91859.1\|93517_94141_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.10236e-55
CP027856.1\|AVP91855.1\|89407_90247_-\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	1.02692e-36
CP027856.1\|AVP91864.1\|96365_97370_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	2.64609e-166
CP027856.1\|AVP95393.1\|109005_110040_-\|quinolinate-synthase	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
CP027856.1\|AVP91856.1\|90445_91009_+\|DNA-repair-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	1.11133e-24
CP027856.1\|AVP91857.1\|91046_91868_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	8.28763e-80
CP027856.1\|AVP91871.1\|106946_107942_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
CP027856.1\|AVP91870.1\|104411_106601_-\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0
CP027856.1\|AVP91866.1\|98351_99491_+\|chorismate-binding-protein	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	9.31092e-66
CP027856.1\|AVP91861.1\|95022_95340_-\|hypothetical-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	0.000215846
CP027856.1\|AVP91858.1\|92111_93350_-\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.73566e-40
CP027856.1\|AVP91863.1\|95744_96239_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.51605e-22
CP027856.1\|AVP91873.1\|111814_112630_-\|tol-pal-system-protein-YbgF	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	3.45728e-66
CP027856.1\|AVP91869.1\|102151_104329_-\|1,4-alpha-glucan-branching-enzyme	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
CP027856.1\|AVP91868.1\|100010_102152_-\|glycogen-debranching-enzyme-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP027856.1\|AVP91867.1\|99561_99954_-\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	1.04755e-72

>CP027856.1|AVP91864.1|96365_97370_+|NADP-dependent-oxidoreductase
MTPISHQIQLLRRPTGLPAQSDFILKEVPLPALQEGEVQVANQWLSVDPYMRGRMSEAKSYVPPFPLNGPLDGGAIGTVLASRHPDFKAGDRVSSMLGWRDAFVAKGEQLTRLPATALPSQLFLGALGMPGMTAWAGLHKVARLQAGETLLVSAASGAVGTMAVQLAKRAGARVIGSTGSADKVAYLKTLGADAVINYRETPDLDAELARLAPEGIQVYFENVGGAMLDAALNNMALHGRIVLCGLIEQYNSNGEAKGPRNLSQMIRKRILMQGLLVSDHWQHYGDFLAEAIPAFEAGALQAEETISEGLASMPQAFIGLFEGRNTGKMLVKLG
>CP027856.1|AVP91863.1|95744_96239_-|MarR-family-transcriptional-regulator
MCANYSDLSCPGVYWPQSSARCPMSELKKQVCFALYSASNAVMRAYRPLLDKLDLTYTQYLVMLSLWARDEVSLKEIGQETGLDAGTLTPIVKRLESKGWLTRTVSSEDERQKCIRLTEAGRQLQQGVRECCLADNLRNQVDLADAELAELKRLCDRVAAQLGR
>CP027856.1|AVP91862.1|95484_95715_-|hypothetical-protein
MKPWLPLFALLLSGCAGGPHSPSELQIDDADAWQALCKDGVRVRAVTDEGICVDHRGLAMWTNKPRAVRMAEEAAK
>CP027856.1|AVP91861.1|95022_95340_-|hypothetical-protein
MQSSIVGLSILWGLASFGVQGDFIESRDSVAPSWQAESRVEMEGYLIESLGEDRWVFDNGSESLLVSLPEGQWVSEGERLRLSGEPQQEQAGWLLQVQDVSQVGV
>CP027856.1|AVP91860.1|94451_94928_+|Lrp/AsnC-family-transcriptional-regulator
MLKLDRIDRHILELMQENGRISNLELAELVGLSPSPCSRRVKALEDAGLIDTHVTLLNARQLGLTLTAYIHISMDRHTPERFENFDRAIQDLPEVLECDLITGNDADYQLKVVVRDMEHYQHFLLDKLTHISGVTGVRSSFVLRRIKHKTALPLNHLG
>CP027856.1|AVP91859.1|93517_94141_+|MarR-family-transcriptional-regulator
MNASTDKILYLLKTHGPQSAAALGEQLQMTSMGARQHLTALEADGWVGFSDEARGRGRPIRLWHLTDQAWQRFPDTHSELTLQLIDDVQQLFGESGLDQLIARREQQMLSRYQARLTQPALADRLTALKELRSREGYMADMSQEEDGSWLWWESHCPICAAARACRGFCRSELALFRQLLAPARVEREQYLLDGDRRCLYRIRPPQA
>CP027856.1|AVP91858.1|92111_93350_-|MFS-transporter
MEGIKGQATLWVLVMTVTLAVAGFSLPSPVLAPLMLDPAQGMLTPQASDWSRKLWLGVIMGLYPLFQLLGAPWLGKLSDRHGRKPVLTLCLIGVLAGYVLMALGIAWRSLPLLLLSRVVEGFFNGDIAIVQAMAADMSTTRTKARNFARINIGMNLGWVLGPMIGGYAAVVSGDYSLAAWLAVAMTVGNLLLVLWLLPNRPPVPAEQELASLSTRQLLLQPRLLPYFVLTLLSYGAVQLYFTYFNVWLVERLAWDPVQLAQAAVLVSVPMMLGSWLGEQLARHWRGSSLGIVGHLVMAAGMLMFILPTQWWGLALTFIPAGIGMSLGELATSVAISNRSHASQQGQAMGIYRGLAVGSEILAVVLGSLALLAGTEWPFYLAALCGVICALGFYGLRRRADRRSAVAACAEPG
>CP027856.1|AVP91857.1|91046_91868_-|Cof-type-HAD-IIB-family-hydrolase
MSEFQAIALDMDGTLLTRDHKISSATRAALAQARAHGIKVLLVTGRHFMTARPFHHELALDTPLICSNGAYLYDPAQGRILAGDPLAVAPLTALLAEVQAQQMGALFHLDGGIGYLGCEEHVGRMRRWSANQPDHLKVSLLPAEDIDSWLQKPIWKLELFNQDPGLLHRFVGEVVQKLPFTQDWAAPYAVELVQPGCSKGNRLAQWAASEGIAMEKVVAFGDNNNDISMFEQVGLAVAMGNAAPQIQAHADRVTADHNEDGIALALQRWVLPA
>CP027856.1|AVP91856.1|90445_91009_+|DNA-repair-protein
MSPKILLLTLPLLLAGCSSLSEEECRAMSWYNQGYQDGEQGKTRTATRDYKQTCGEYGLRVDEDEWQRGYAKGLELYCIPELAYSKGREGNEYLGVCPNDTSFLTQFERGRKEFLLEQRLGELQQELERTERTIYQLDQQIRGESDSKQRDYYRAQRERAIRHYEGVRRDYNRIRFPDRVIQFSFGS
>CP027856.1|AVP91855.1|89407_90247_-|isopenicillin-N-synthase-family-oxygenase
MKVLTVDYRSPDAAERFTESLRTTGFGVLTHHPIPKELVQSIYDNWYRFFMSEQKQDFLFNRETQDGYFPPSVSEVAKGNTQKDIKEYFHLYPWGQMPEELRAQAMEYYRLANDLAAELLSWVEQYTPADIAAHYSCPLSSMIEESQKTLLRVLHYPPFDGTEAPGAIRAAAHEDINLLTILPAASEPGLQVKGSDGEWMDVPCDFGTLIINIGDMLQEASHGYYPSTTHRVINPTGGSVSKSRISLPLFLHPRPDVVLSERHTAHSYLMERLRELGVI
>CP027856.1|AVP91866.1|98351_99491_+|chorismate-binding-protein
MGQVFLQFLWLGCISFGGPAAHIGYFQRTFVQRLGWLSQAEFAQLLALCQLLPGPASSQLGFAIGRHRAGLGGALAAFIGFTLPSFLLLLVAAIGVGQLGNNLWLDGALHGLKLLALVVVADAVLTMSRQFCKTVLQQGVMVATAAALWWQPGLLTQLGMLLGAALLCAQREAVGASPATPQARRVPHWPTLLLFALLFVGLPLLAQDPASQLVADFYRAGSLVFGGGHVVLPLLQESVGHSLSQQQFLTGYGLAQLVPGPMFTLASYLGAQLSPATPLAGALLATLALFLPGFLLLWALGPCWQSWLAHPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPADLALAAVAFYLLRVIRLPILALAALLVGANQLLI
>CP027856.1|AVP91867.1|99561_99954_-|peptide-methionine-(R)-S-oxide-reductase
MKGNNPEQWRSKLSAEQFHVCWEKGTERPYSGALLHNRKSGDYLCVCCKSVLFHADAKFDSGCGWPSFDRAIEGTVTYTEDRSHGMARVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLEFEPDTDA
>CP027856.1|AVP91868.1|100010_102152_-|glycogen-debranching-enzyme-GlgX
MFVMENGVDYPLGARLDEAGCHFCVWAPQSDKVELCLFDEQEQELVRLALPGRRGQYRFGYVRGVKAGQRYGYRVHGMPQEGMLFDPDKLLIDPYARALSRATRWNDDLYQGDSAAMVAKSVVVDDAFDWQGVGKPGIPPERVVLYETHVKGFTRQHPGVPEALRGTYLGVSHPLMIEHLLSLGVTSVQLMPVAAFMSEPRLEQLGLTNYWGYNPIAFFAPEPRYGAGEAVTEFKTMVRELHRVGLEVILDVVYNHTAESGVDGPMLSLKGFDNAGYYAFETGAHGPDYHRHANVTGCGNSVNLDHPNSLRLVLDALRYWVTEMQVDGFRFDLAVTLAREAGEFDPMSAFFKALLADPVLARVRLIAEPWDIGPFGYRLGQFPSQWLEINDRYRDTVRAFWRGDAGKMGDFATRLAGSRDLFPKNWRSPHTSVNYLCYHDGFTLEDLVSYNQRHNQANGEDNRDGHGNNLSYNHGVEGPTLDPRVNNLRQQQKRNLIATLLLSQGTPHFLAGDEMGRSQLGNNNAYCQDNQISWVNWQLRPEDERLLAFTRQMMALRAESGVFANLQLSDDSWNGASTSCHSVNWYHPDGHQLTDQDWHAPMGQAFAMDIGMLACGGERWYVLFNASDYDIQFRLPPPGEGLEWIQTIDTATNDGLPFLPDDIKRQVAVGRAHSLKLLERVSLPAVALAKEGVVATPDVAAVLPTGSQFPLAG
>CP027856.1|AVP91869.1|102151_104329_-|1,4-alpha-glucan-branching-enzyme
MPVERLVAARCADPFSHLGLLANPDGPGLKLTAWLPDALEVRVRDLKSGKIVATLTAADEAGLFETVFTRRKNPFPYQLIASYPDASAESIDPYQFQAAAWEGLAELSFQPENLYHTLGAQLRTVEHLGQQVAGVRFAVYAPSATAVSLIGDFNFWDGRRHPMQRSQCGHWVLFVPGLKAGDRYKFELKDPAGHRLPHKSDPVGFYCEQYPSFASVIHDHEQYQWQDAAWRESQRNDKREQPLSIYELHVGSWKRHPNGDSLNWRELAVELVNYVTEMGYTHIELMPVSEHPFSGSWGYQPVGMFSPTSRYGSVDDFKHFVDACHQAGIGVILDWVPAHFPADAHGLARFDGTPLYEYEDPRRGWHPDWNSYIYDFGRNNVRQFLVASALFWLDKFHIDGLRVDAVASMLYLDYSRNAGEWVPNVDGGNHNYEAISLLKWTNEEVYGKYPHTMTIAEESTAFAGVSKPTFLGGLGFGFKWNMGWMHDTLSYMQKEPIHRRYHHNEMTFSMVYHYDENFILALSHDEVVHGKHSLLYKMPGDEWQQAANLRAYMGFMYGHPGKKLNFMGTEIAQSNEWNHDAQLPWHLLQFPKHGGQQRLIRDLNRLYRHEAALYQADYEQSGFRWLDHNDADNSIFAWLRADKQGANPVMIASNFTPVPRLAYRLGVPEAGRYAVVLNTDSEHYWGSNYDVGLTLVAEPTPWQGMADSIVLDLPPLATLFIKQES
>CP027856.1|AVP91870.1|104411_106601_-|4-alpha-glucanotransferase
MTTLIEQLAAAKGIASEYVDAWGHPAQVSEESKAAMLGAMGYRVDDEAALTEQLEQEHRQHWLRPLDPVMVVRSGDPISLEVRLPIEFVNDALHWQIVLEQGALLSGQLTPIEGELVGVAEFEEMECQAYRVALDVQPELGYHQLMLLEEGNDEPLATMRLIVAPKSCYKQAPIANGRKVWGPSVQLYCLRSRHNWGIGDFSDLGQLVEQAAAWGAHFVGLNPIHALYPANPESASPYSPSSRRWLNVAYINVEAVPEFLANERLKADVASPAFQQHLASLRAKENVDYTGVIETKIGMLRQVFDEARLSAERQAAFDAFVAAGGDSLQQQAAFDALQAHFYGKGENAWGWPVWPDAFRDYHNPEVAVWMQEHSQDVNFYLYLQFLADEQLAQADARAKAAGMVMGIYRDLAVGVSEGSTEIWANRDLYCPKASVGAPPDILGPLGQNWGLPPMNPNQLFEAAYQPMVDLFRANMRACGALRIDHVMALLRLWWVPPGASAAKGAYIYYPVNDLLGILALESHRNQCLLIGEDLGTVPEGIDVTLKENGVHSYKVFFFERSKGDGGFISPAHYTEQAMSALTTHDMPTLKGFWHCDDLALGRELGLYPDEEVLKTLYADRHQAKQRILDSLHAHGVISGNISHDVNWVGMNTELNHGLQLHMSRGSCALFSTQLEDWLEMDKPVNVPGTSYEYPNWRRKLSKDLEDIFADEALKALAGKMSQARDEASR
>CP027856.1|AVP91871.1|106946_107942_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVGINGFGRIGRFVFRLAAERADIEVVGINDLIDVDYMAYMLKYDSTHGRFNGTVEVKDGNLVVNGKTVRVTAERDPANLKWDAIGVDVVAEATGLFLDDATARKHIAAGAKKVVLTGPSKDATPMFVMGVNDSTYAGQDIVSNASCTTNCLAPIAKVLNDTFGIESGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGVVIPELNGKLTGMAFRVPTPDVSVVDLTVNLKKAATYAEICAAMKAASEGSMKGVLGYTEDQVVSTDFLGERQTSVFDAKAGIALNDKFVKVVSWYDNEMGYSSKVLDLIAHISK
>CP027856.1|AVP91872.1|108050_108917_+|D-hexose-6-phosphate-mutarotase
MQPTRTLTAHCTLSHPADGQPLLTIDNEHARAEISLFGAHVLRYQRHGEPASIWLSDKAVLDGSKPIRGGIPLCWPWFGPSPARVGSGKPSHGFARTSLWTLDGVSDHGDGTLVHLSLRDTDASRALWPHAFELELDVLVGKELSLVLTTRNTGKTPLTYNAALHTYLQISAPEAVSVTGLGEPYADKLTGQDGQQQGALTLTAAIDRVYQQAEAMVMVKDGDRTTKVVSGNNDSVVVWTPWLEGATAMADMSDDGYRTMLCVEAAITAEAGVVIAPDEEHSFSTVII
>CP027856.1|AVP95393.1|109005_110040_-|quinolinate-synthase
MDYPFPVKPAPLTAEQKAALIIEIKALLEARQAVLVAHYYTDPEIQALAEATGGFVGDSLEMARFGRDHAAQTLIVAGVRFMGETSKILSPHKRVLMPTLEAECSLDLGCPIDQFSAFCDAHPDHIVVVYANTSAAVKARADWVVTSSIALEIVEHLDSQGHKIIWGPDRHLGAYIEKKTGAQMLRWQGHCIVHDEFKAKALRELKAQNPDAAVLVHPESPASVIELADAVGSTSQLIKAARELPQQKLIVATDRGIFYKMQQACPDKEMVEAPTGGDGATCRSCAHCPWMAMNGLVAIKEALTDGAEHHEILVDEELRVKALIPLDRMLNFAAELKLKTQGNA
>CP027856.1|AVP91873.1|111814_112630_-|tol-pal-system-protein-YbgF
MIRMKSVYKQAVVALAVLVALNAHAAAPVSDLGGDSGGGVVLSGNNGAIVPTGSLEDRVALLERTLNARLRLQAELQQQVDSLQGEVSELRGQLEQQTYQMEQSQERQRQLYQELDKVANSQPAAAAPATPAAGATTPAAAANYSTNQDENQAYDAAVNMVLKEKNYDKAIPAFEGFIKQFPSSSYVPNAHYWLGQLMFNKGDRAGAASQFSTVANKYSKSPKRADALLKLGMLAQLDGKKAEAKTFYEQVIKGYPNTSPAQLAKQSLGKL
>CP027856.1|AVP91874.1|112779_113304_-|peptidoglycan-associated-lipoprotein-Pal
MQLNKLLKGLAIALPLFTLAACSSSSDSDAAGAESGMTDGMGGVQTGGANGMLSPEEQMRQKFEALQRDNVIYFPYDGYDIQGQYADLLDAHASYLRERPSVKVLIEGHADERGTPEYNIALGERRAKAVAKYLQTLGVQAEQLSIVSYGEEKPLDLSHTEDAFAKNRRAVLVY

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Crispr_ID: CP027856_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_3

440770-440885

Orphan

Consensus_repeat	Method
AACACCTTGCCGATGTCCTCCAGGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_3

>merge|CP027856|3|440770-440885|CRISPRCasFinder
AACACCTTGCCGATGTCCTCCAGGCGATGGCGGACCATCGCGGGTGAGCCGGCCCGACGACACCTAGCCCTTGGGTTGCTCGTAGGTAAACACCTTGCCGATGTCCTCCAGCCGAT

>CP027856|3|3|440770-440885|CRISPRCasFinder
AACACCTTGCCGATGTCCTCCAGGCGAT	GGCGGACCATCGCGGGTGAGCCGGCCCGACGACACCTAGCCCTTGGGTTGCTCGTAGGTA
AACACCTTGCCGATGTCCTCCAGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP92146.1\|433223_434666_+\|RimK-family-alpha-L-glutamate-ligase	unknown	unknown	gnl\|CDD\|379599
CP027856.1\|AVP92160.1\|451148_452102_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
CP027856.1\|AVP92151.1\|440216_440735_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|350355
CP027856.1\|AVP92149.1\|437563_439528_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224287
CP027856.1\|AVP92144.1\|432290_432536_-\|DUF3624-domain-containing-protein	unknown	unknown	gnl\|CDD\|372017
CP027856.1\|AVP92150.1\|439585_440056_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP027856.1\|AVP92147.1\|435287_436958_-\|glycosidase	unknown	unknown	gnl\|CDD\|200451
CP027856.1\|AVP92153.1\|441864_443163_+\|HD-family-phosphohydrolase	unknown	unknown	gnl\|CDD\|225116
CP027856.1\|AVP95417.1\|445326_446955_+\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
CP027856.1\|AVP92159.1\|450234_450945_-\|haloacid-dehalogenase	unknown	unknown	gnl\|CDD\|182696
CP027856.1\|AVP92148.1\|437028_437301_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95415.1\|431501_432248_-\|NADP-dependent-3-hydroxy-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|187604
CP027856.1\|AVP92156.1\|447226_448036_+\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
CP027856.1\|AVP92158.1\|449737_450142_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95416.1\|434693_435227_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376760
CP027856.1\|AVP92157.1\|448401_449172_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	unknown	unknown	gnl\|CDD\|336781
CP027856.1\|AVP92155.1\|444361_444877_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183256
CP027856.1\|AVP92145.1\|432563_433037_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
CP027856.1\|AVP92154.1\|443190_444354_+\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|179629
CP027856.1\|AVP95418.1\|452094_452745_-\|DUF484-domain-containing-protein	unknown	unknown	gnl\|CDD\|225701

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP92146.1\|433223_434666_+\|RimK-family-alpha-L-glutamate-ligase	gnl\|CDD\|379599	pfam14401, RLAN, RimK-like ATPgrasp N-terminal domain. An uncharacterized alpha+beta fold domain that is mostly fused to a RimK-like ATP-grasp and is found in bacteria and euryarchaea. Members of this family are almost always associated in gene neighborhoods with a GNAT-like acetyltransferase fused to a papain-like petidase. Additionally M20-like peptidases, GCS2, 4Fe-4S Ferredoxins, a distinct metal-sulfur cluster protein and ribosomal proteins are found in the gene neighborhoods. Contextual analysis suggests a role for these in peptide biosynthesis.	2.21456e-44
CP027856.1\|AVP92160.1\|451148_452102_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	3.45173e-158
CP027856.1\|AVP92151.1\|440216_440735_+\|protein-tyrosine-phosphatase	gnl\|CDD\|350355	cd14505, CDKN3-like, cyclin-dependent kinase inhibitor 3 and similar proteins. This family is composed of eukaryotic cyclin-dependent kinase inhibitor 3 (CDKN3) and related archaeal and bacterial proteins. CDKN3 is also known as kinase-associated phosphatase (KAP), CDK2-associated dual-specificity phosphatase, cyclin-dependent kinase interactor 1 (CDI1), or cyclin-dependent kinase-interacting protein 2 (CIP2). It has been characterized as dual-specificity phosphatase, which function as a protein-serine/threonine phosphatase (EC 3.1.3.16) and protein-tyrosine-phosphatase (EC 3.1.3.48). It dephosphorylates CDK2 at a threonine residue in a cyclin-dependent manner, resulting in the inhibition of G1/S cell cycle progression. It also interacts with CDK1 and controls progression through mitosis by dephosphorylating CDC2. CDKN3 may also function as a tumor suppressor; its loss of function was found in a variety of cancers including glioblastoma and hepatocellular carcinoma. However, it has also been found over-expressed in many cancers such as breast, cervical, lung and prostate cancers, and may also have an oncogenic function.	4.24438e-42
CP027856.1\|AVP92149.1\|437563_439528_+\|hypothetical-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	3.40459e-95
CP027856.1\|AVP92150.1\|439585_440056_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.77279e-36
CP027856.1\|AVP92147.1\|435287_436958_-\|glycosidase	gnl\|CDD\|200451	cd00551, AmyAc_family, Alpha amylase catalytic domain family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	2.91985e-56
CP027856.1\|AVP92153.1\|441864_443163_+\|HD-family-phosphohydrolase	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.255e-51
CP027856.1\|AVP95417.1\|445326_446955_+\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	8.68652e-148
CP027856.1\|AVP92159.1\|450234_450945_-\|haloacid-dehalogenase	gnl\|CDD\|182696	PRK10748, PRK10748, 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB.	1.73162e-60
CP027856.1\|AVP92144.1\|432290_432536_-\|DUF3624-domain-containing-protein	gnl\|CDD\|372017	pfam12292, DUF3624, Protein of unknown function (DUF3624). This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.	1.21524e-25
CP027856.1\|AVP95415.1\|431501_432248_-\|NADP-dependent-3-hydroxy-acid-dehydrogenase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.42798e-145
CP027856.1\|AVP92156.1\|447226_448036_+\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	3.77773e-106
CP027856.1\|AVP95416.1\|434693_435227_+\|hypothetical-protein	gnl\|CDD\|376760	pfam02308, MgtC, MgtC family. The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologs is not known.	4.46088e-32
CP027856.1\|AVP92157.1\|448401_449172_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	4.29392e-89
CP027856.1\|AVP92155.1\|444361_444877_-\|hypothetical-protein	gnl\|CDD\|183256	PRK11648, PRK11648, metal-dependent hydrolase.	3.26713e-66
CP027856.1\|AVP92145.1\|432563_433037_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	1.05397e-14
CP027856.1\|AVP92154.1\|443190_444354_+\|competence/damage-inducible-protein-A	gnl\|CDD\|179629	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY.	4.10083e-90
CP027856.1\|AVP95418.1\|452094_452745_-\|DUF484-domain-containing-protein	gnl\|CDD\|225701	COG3159, COG3159, Uncharacterized protein conserved in bacteria [Function unknown].	4.57722e-38

>CP027856.1|AVP92151.1|440216_440735_+|protein-tyrosine-phosphatase
MLSAHPFWSLEVPRLDGQLLLTPCPGNQQVVMPLALAQLQLAGAGGVLTLMTKDELAARGAGSLGSLVRARGMAWFHLPIADDEAPDEAFEQAWPPVLPQLLALLREGRHLAMHCHGGSGRTGLVAALLLMTLGQPQPEAMTAIRARRPGAFTLACHRHWLDTRGRRLAGAD
>CP027856.1|AVP92150.1|439585_440056_-|Lrp/AsnC-family-transcriptional-regulator
MRNLDQLDLDILAHLFRDAGMTNKDLAALVGVAPSTCLERVRKLQQDGVLKGAHCEVDYQALGGHIQAMVSLQLARHSRQIIDAFRDAILALPEVISLFHMGGKDDFLVHLCVADTEHLRNFVFDHFTSREEVVHLETSLVFEHRFSRSLPCFTHP
>CP027856.1|AVP92149.1|437563_439528_+|hypothetical-protein
MTKIRHWLGPFWPIAIFSVIALIALSASRAGLGLWQQERVDAVAGWSEMLLQGLRVDFATLCWLWGVPAVFTLLLAGPHALGRAWLQLIRVWLTLGLWLMLFLEISTPAFVTEYGVRPNRLYIEYLIYPKEVLAMLWAGRKGELLLALVFSLLTLGGGWWLSGRLMRHLSFPRWHLRPAFALLILAIGFLGARSSLGHRALNPAMVAFASDPLVNALTVNSAYSLFFAIKQMSNEESAGEFYGELPRERILELVREESGRPGQDFNSETQPSQTFNEASHGGKPKNLVILLQESLGAQFVGSLGGLPLTPNIDALSREGWAFEQLYATGTRSVRGIEAVLTGFTPTPAQAVVKLGKSQTNFFTIADLLKQRGYDTSFIYGGESHFDNMRSFFLGNGFTTIVEQKDFKNPVFEGSWGASDEDLMAKANDTFEKLHKQGKPFFSLVFSSSNHDPFEFPDDRMSLYEQPKATRNNAAKYADYAVGEFFRKAKTSDYWKDTLFLVIADHDSRVGGASLVPIPRFHIPGVIVGEGIAPKQDRRIVSQIDMAPTLLSLMGISADYPMLGKDLTRMPPDWPGRAIMQYDKNFALMRGKDVVILQPERAAEGFIYDDASETLTPAPQPDAMKDAALGLVLWGNLAYQQGLYQTAPDGRLALN
>CP027856.1|AVP92148.1|437028_437301_-|hypothetical-protein
MPVFIDVEYVHGWCLFVVLSDGTTGVLDLTPWRSQPLFAALDSERRCARVFINRRHQLEWPSGCTLSAQEVYHLIAPIDEREAFPDRNPG
>CP027856.1|AVP92147.1|435287_436958_-|glycosidase
MASGWRILRQHHHSGKITMKQGRLRHGGLIGAALLLTACGSGGGGSSGETQPPVVNPPPTSDSRACHGDDQPACNLRTYQVMVESFVDGDGSANYGVGYGPSRHNGDLQGIIDSLDHIKSLNVNAIWLTPVFDSCAGQAGDDRLDATGYFACDFFNVDPNFGSNAQLKKLVEAAHQRGLYVFLDGVFGHVNKVGVSKPSPEGRLPALTSGGAGYPGQLVDYGQPESLAYFKEVARYWIEQYGIDGWRLDQAYQLGLDDWRAIRTEVEQASAARKAAGQQWGTLGYLVGEVWKGADEIRAQAYGSSDNPALSSAFDFPLRYGLVQALAVEESGKGGQGASVLDASWNKVENYPNHAMPNLMLGNHDLVRFGDLLERGNFNQADYWQRHKAAFSFLAARSGPITLYYGEEFGDEVPGFAAQVSDDCAAQGLCDDHVARSDGKVPGVTGFTPSGEQAELKQWLSELLALRAAHPALYQGERVKLVADGSVYGDIKQTAAEQVVYLLNLSTTPQSYSLPLAKLRSGSALVDLQSGERLAMGGSSLTVDLPPLTGRFLLLQ
>CP027856.1|AVP95416.1|434693_435227_+|hypothetical-protein
MTTQWWDIAPLGWNNILACLVCGGLVGLERQLHGKPVGIRTSSLIVLGTYCFLAIGAAVSPQSADQARVLGQLITGIGFLGAGVMMTRDGQVLGVTSAATIWMLAALGALIGMGMLHQAVLLTGVTLGILVGVHYLETSFKSLRRGVHNRLEHWRNGNERGVSASPRQEELGSGLEK
>CP027856.1|AVP92146.1|433223_434666_+|RimK-family-alpha-L-glutamate-ligase
MSTYVIVEELGDWPCHADYLLTARTYLQHGVPTTGGRPRIINLCRSLEHLSAGYYCSLLAQARSHHCLPGLQAISRLQPQQPPAKLWRKLQGWLTRQSEDRIRVHAIFGQCEQSELGGLARYYYGLSQLPLQELTLKRGRHGWSVRQQQSLSPLELSQSERELMLQHAQALVGTGGEEQTAPLYQLAILMDQNDGRASSDALAIERFIQAAAAQGIQAEILAPSAIERLPEFDTLWLRAETAVGHYTFEFARRAEQLKMPVIDSSRAILACSNKLYLYELMVRSGVPMPPTMVVTRRGRHQVDELVQRLGLPLMVKVPDGAQGRDLAMASDETQLARLLDEGLGRSALLLVQSRIPAEFDWRIGFLDGSPLFACRRYRPEPGNRIRRRKHPLDLSRIEALPLTEVPERVLQTARRAVHQLGNGLFGVDLRQQGQGCVLLEIIDNPWIRGDIEDREAKDLYERLARAFRQRLENRGQSAAG
>CP027856.1|AVP92145.1|432563_433037_-|GNAT-family-N-acetyltransferase
MLTVRAARTDDLGAIVKLERYCFPPEVAFGRSRWHYLLSHAKGRTLLLQDEKAQLMGYLSVLEHRGWDRLIIQTLAIRWTVRRQGWARRLLEQVIREGREAGWGAIRLEVADANPEAQTLYHRLGFRPRLRLPDYYGPGQHAHRLVLALRPAGRDAS
>CP027856.1|AVP92144.1|432290_432536_-|DUF3624-domain-containing-protein
MGCDDCLATAIKAKLGRCPVCAIQTFVIGAVGWLVWWWCGADTSVNALTGLLFALGGSGLLLLHLSVFLWRKVTGRELDNE
>CP027856.1|AVP95415.1|431501_432248_-|NADP-dependent-3-hydroxy-acid-dehydrogenase
MIAMVTGASSGFGEAISRQLVQAGYRVIGTGRRAERLAALADELGEQFLPLAFDVQDKAATRAAIEGLPAVWQEVDLLVNNAGLALGLEPAHKADLEDWEQMIATNISGLTLLTRLLLPGMVARNRGHVVNIGSIAGTYPYPGGNVYGATKAFVKQFSLNLRADLAGTAIRVTNLEPGLCGGTEFSNVRFHGDDAKAATVYQGVQAIQPEDIANTVLWVSQQPAHVNINSIEIMPVAQTFGPLQISRR
>CP027856.1|AVP92153.1|441864_443163_+|HD-family-phosphohydrolase
MYSPLPLTSIRLCVSLVSNPMTGIKISVDRLQVGNYVSLPLGWREHPFLFSSFKLKSEEEIELIRRLGLKLVTIIPDKSDAPPKPLDQVHPAPDGTDDLVGRQQEMQQEKARRIEQLQRYRRDLQQCEKHFQQSLAQVRNLMGKIQSRPLNAINEAQELINAMTEQLLSVDEMVLHLVSDSADGNSLQFHSLNVSVLSMLLARECKLPAEAIRQVGMGALFHDIGKLKIPSQILRKTSPLTKPEQNLMAQHPRYGLELLSLASGFPEPAKRIVQYHHEYLDGSGPQGLRGEQLDPLTQIVSLINEYDNLCHLQAKVPYSALGNLYKQRKAQFNTDHLGMLIRLMGIYPPGSVVQLSNGQVGLVMSVNASRLLYPAVLVYDPRIPRQEAAIIDLEQAELTIAKVIHPKRLPPAVFEYLNPRTRISYYFEHNKP
>CP027856.1|AVP92154.1|443190_444354_+|competence/damage-inducible-protein-A
MRIEIISTGDEIVTGLVVDTNAAWLSALLLEQGWQVRRRLTVGDNLADLKAALQESANRAEVVLVCGGLGPTADDLTAQAAAEAFGQPLTLFPDWLATMAERYASRGRIMAQSNSKQAWLPRGCEILDNPVGTACGFLVSHPASHGQSRLFFTPGVPFEFKQMVCEQILPRLKALAGEETDTELRRFYTFGISESALSDKLDAAPWPAGIELGYRSSMPLIELKLIGHGASAADMAAAEARLLGEISPWLVGRGNEDPAQQILALLGERPLWLQEGESRGALLAMCHPHPVLEASFSHNLPSELDQLTGSGREPSLTIGSTGPGGVPLLLCADGQRIGQRVKLSHPDPESGRRILAFAALDMLRRHLQGLPVLADYLTLTRTASRID
>CP027856.1|AVP92155.1|444361_444877_-|hypothetical-protein
MTAQGHLLFSVTCALLAHKVELTPALAEGSLWHIVPMALASALLPDLDHPQSLLGRQLPWISGPLSRLFGHRGFTHSLLAVGLGIWGLAQFQAPGPLSGVMKDALIVGYLSHLLGDWLTPAGIPLFWPWRRRFRLPGLPLKSGGGYEKAFCLLTLALAGYWVHGSAGLGAF
>CP027856.1|AVP95417.1|445326_446955_+|DUF342-domain-containing-protein
MTYVCLRITPGLTEPVQEQHVLALLRLSNCRRYQPLDEGIRQAVALLNTLLTQPDAPSHPPVPIAQRQDARLLVLVDKDQMSASAQITADWGGSPLTLAQLQEAVAASPIKQGVSERLFAAAIKAASEAAPGARLTPVIALGKAARHGQDTRLERLVETAAERILRPQEVDHGKVDMRDLGTLLTVKAGAPLMRRHPATQGIEGFTVTGQVLPARHGKESAMTAGEGTCFSPEDPDLLLATRAGLPCQERAGMRVDEVLSVKQVDIRHGHVMFEGSLLVTGDVMPGMRIKTSGDVVIGGFVEGGHIESGGTITVRNGIIGRKLEGDQYLCHLNAGGEIHASYAQYARLEADGDIHIQSQLSHSYCRSGQDIRVGDSAMRKGHLIGGINIANRLIMAPVLGASAANRTRLQILGGYFSHKEQEQALRQRKQACREQLDKLQDLILRLLQLPGDKRNPETLKKIKELRTRQLDESKSLDEQLAEAQRELQALMANMDIIATQRLFPGVEVEMAHHHNRVDIEHGPIHFAIREDQLQLTPYEGQH
>CP027856.1|AVP92156.1|447226_448036_+|sugar-phosphatase
MYKLIALDMDGTLLNPHGQITPRTHAAIAAARAQGVTVVLTSGRPLEGMTPYLAELGLNGQDDYVICYNGALVQQVADQRILRSQLLTGSDASAIAHLAAELGVNVHGFSVRQGLISPRISTYTEHESQLIKMPINLVDFATLPADEQIMKVMMIDPEPQLSRAIAQLPAELYERYTVVRSSPYFLEFMNKRSNKGTGVAALAEHLGLTASQVIAVGDAGNDRHMIEYAGLGVAMGNATDEIKALAQHTTARNDEDGVARVIEQFILNA
>CP027856.1|AVP92157.1|448401_449172_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase
MPNPSSHSKPVVLMTMGAQARSGHAYQVMTHKYITPLVELSGCVPLLVPTCCGTADLEQYLDLVDGVYLSGAGSNIDPALYGQENLTPEKAQDRDRDLFDIALVRAALDRGLPLLGICRGMQEINVALGGDIHQKVYCEPGYADHREDADDPVEEQYGHSHQVSLVPGSWFADLMGEAQIPVNSLHGQGIKTLAKGLAPLAHAEDGLIEAIHAPALSPFLLAVQWHPEWKAKENPHSIKLFSAFGDACRQYRRREG
>CP027856.1|AVP92158.1|449737_450142_-|hypothetical-protein
MKSVIWLAIPMVLAGCDLFSDHYRMEFRDGSWRDIAISPFSDQARWREGCATGEILVDMTLPLKRGKVVDGREQLLIGGELFELEEARLYRGNGMVLGQAPDHVQRGLKGLDVCRTLRPDRGALPKLKGKGFGD
>CP027856.1|AVP92159.1|450234_450945_-|haloacid-dehalogenase
MQFYRRWQPVAAISFDLDDTLYDNGPAIARAEQWMLSHLRSEYLATAMLDKPRWLELKRNLLLARPELSQDVSLARQHGIREAMVQGGMAASRAEQEAERVFAAFLAERSKIEVSQGTHQLLARLAERYPLAVITNGNLDLEQAGLADYFTLVCKAGAGARMKPAPDMFVQVQQALGLAPGQILHVGDHPETDVLGARLHGFKAAWLNERRLPWQSLQLLPDVELATLDELAGLLL
>CP027856.1|AVP92160.1|451148_452102_-|tyrosine-recombinase-XerC
MAKAPLPAAPLPPALAGELTAFIEYLRVERQLSPHTRSNYQAHLEAMAAELVRLGVDDWARLEASQVRSLVTRMHKAGLAPRSLATKVSALRSFCDWQVRQGRLPANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLADVKFDERQLRVTGKGSRERVLPMGRMAVEWLQKWLKVRPLLAGDEGEALFVSKRRQRLSARSVQERLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHPRAKRDPDTPEDE
>CP027856.1|AVP95418.1|452094_452745_-|DUF484-domain-containing-protein
MDEATVLEYLARYPEFFQRHGAMLDRIRIPHEHKGTISLVERQLDRQRERIEQLEQEITELMGIASENERIFRVYADLYGELYGCQTLFELSAVMGKAFVQRLRLTGLRLWLSPKKFQLTGPEQRFLADGKQLDQLLGQRLPGTDYYFGRLNQSEKQALFGSDVLVNSVALMRLGDLGVLAFASSDPSHFTPHNDTLLLGQLGRLLQLRLPELVRG

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Crispr_ID: CP027856_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_4

449668-449763

Orphan

Consensus_repeat	Method
TAGTCGCCGAATCCCTTGCCCTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_4

>merge|CP027856|4|449668-449763|CRISPRCasFinder
TAGTCGCCGAATCCCTTGCCCTTCAACTTGGGCAGGGCCCCGCGAGCAGAGCGCAGGGGCAGAGGGTCGGTTAGTCGCCGAACCCCTTGCCCTTCA

>CP027856|4|4|449668-449763|CRISPRCasFinder
TAGTCGCCGAATCCCTTGCCCTTCA	ACTTGGGCAGGGCCCCGCGAGCAGAGCGCAGGGGCAGAGGGTCGGT
TAGTCGCCGAACCCCTTGCCCTTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP92162.1\|453995_455246_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
CP027856.1\|AVP92160.1\|451148_452102_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
CP027856.1\|AVP92163.1\|455266_455473_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338858
CP027856.1\|AVP92151.1\|440216_440735_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|350355
CP027856.1\|AVP92149.1\|437563_439528_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224287
CP027856.1\|AVP92150.1\|439585_440056_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP027856.1\|AVP92166.1\|456622_459142_-\|class-I-adenylate-cyclase	unknown	unknown	gnl\|CDD\|236522
CP027856.1\|AVP95418.1\|452094_452745_-\|DUF484-domain-containing-protein	unknown	unknown	gnl\|CDD\|225701
CP027856.1\|AVP92153.1\|441864_443163_+\|HD-family-phosphohydrolase	unknown	unknown	gnl\|CDD\|225116
CP027856.1\|AVP95417.1\|445326_446955_+\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
CP027856.1\|AVP92159.1\|450234_450945_-\|haloacid-dehalogenase	unknown	unknown	gnl\|CDD\|182696
CP027856.1\|AVP92152.1\|440832_441780_-\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|235433
CP027856.1\|AVP92165.1\|455857_456529_+\|carboxylesterase	unknown	unknown	gnl\|CDD\|334855
CP027856.1\|AVP92154.1\|443190_444354_+\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|179629
CP027856.1\|AVP92167.1\|459446_460394_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
CP027856.1\|AVP92161.1\|453003_453834_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
CP027856.1\|AVP92157.1\|448401_449172_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	unknown	unknown	gnl\|CDD\|336781
CP027856.1\|AVP92164.1\|455546_455861_+\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|274572
CP027856.1\|AVP92155.1\|444361_444877_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183256
CP027856.1\|AVP92156.1\|447226_448036_+\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP92162.1\|453995_455246_-\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
CP027856.1\|AVP92160.1\|451148_452102_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	3.45173e-158
CP027856.1\|AVP92163.1\|455266_455473_-\|hypothetical-protein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000215164
CP027856.1\|AVP92151.1\|440216_440735_+\|protein-tyrosine-phosphatase	gnl\|CDD\|350355	cd14505, CDKN3-like, cyclin-dependent kinase inhibitor 3 and similar proteins. This family is composed of eukaryotic cyclin-dependent kinase inhibitor 3 (CDKN3) and related archaeal and bacterial proteins. CDKN3 is also known as kinase-associated phosphatase (KAP), CDK2-associated dual-specificity phosphatase, cyclin-dependent kinase interactor 1 (CDI1), or cyclin-dependent kinase-interacting protein 2 (CIP2). It has been characterized as dual-specificity phosphatase, which function as a protein-serine/threonine phosphatase (EC 3.1.3.16) and protein-tyrosine-phosphatase (EC 3.1.3.48). It dephosphorylates CDK2 at a threonine residue in a cyclin-dependent manner, resulting in the inhibition of G1/S cell cycle progression. It also interacts with CDK1 and controls progression through mitosis by dephosphorylating CDC2. CDKN3 may also function as a tumor suppressor; its loss of function was found in a variety of cancers including glioblastoma and hepatocellular carcinoma. However, it has also been found over-expressed in many cancers such as breast, cervical, lung and prostate cancers, and may also have an oncogenic function.	4.24438e-42
CP027856.1\|AVP92149.1\|437563_439528_+\|hypothetical-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	3.40459e-95
CP027856.1\|AVP92150.1\|439585_440056_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.77279e-36
CP027856.1\|AVP92166.1\|456622_459142_-\|class-I-adenylate-cyclase	gnl\|CDD\|236522	PRK09450, cyaA, class I adenylate cyclase.	0
CP027856.1\|AVP95418.1\|452094_452745_-\|DUF484-domain-containing-protein	gnl\|CDD\|225701	COG3159, COG3159, Uncharacterized protein conserved in bacteria [Function unknown].	4.57722e-38
CP027856.1\|AVP92153.1\|441864_443163_+\|HD-family-phosphohydrolase	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.255e-51
CP027856.1\|AVP95417.1\|445326_446955_+\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	8.68652e-148
CP027856.1\|AVP92159.1\|450234_450945_-\|haloacid-dehalogenase	gnl\|CDD\|182696	PRK10748, PRK10748, 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB.	1.73162e-60
CP027856.1\|AVP92152.1\|440832_441780_-\|homoserine-O-succinyltransferase	gnl\|CDD\|235433	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional.	0
CP027856.1\|AVP92165.1\|455857_456529_+\|carboxylesterase	gnl\|CDD\|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	7.17541e-37
CP027856.1\|AVP92154.1\|443190_444354_+\|competence/damage-inducible-protein-A	gnl\|CDD\|179629	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY.	4.10083e-90
CP027856.1\|AVP92167.1\|459446_460394_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	0
CP027856.1\|AVP92161.1\|453003_453834_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	2.38516e-154
CP027856.1\|AVP92157.1\|448401_449172_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	4.29392e-89
CP027856.1\|AVP92164.1\|455546_455861_+\|iron-donor-protein-CyaY	gnl\|CDD\|274572	TIGR03421, FeS_CyaY, iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.46932e-54
CP027856.1\|AVP92155.1\|444361_444877_-\|hypothetical-protein	gnl\|CDD\|183256	PRK11648, PRK11648, metal-dependent hydrolase.	3.26713e-66
CP027856.1\|AVP92156.1\|447226_448036_+\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	3.77773e-106

>CP027856.1|AVP92157.1|448401_449172_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase
MPNPSSHSKPVVLMTMGAQARSGHAYQVMTHKYITPLVELSGCVPLLVPTCCGTADLEQYLDLVDGVYLSGAGSNIDPALYGQENLTPEKAQDRDRDLFDIALVRAALDRGLPLLGICRGMQEINVALGGDIHQKVYCEPGYADHREDADDPVEEQYGHSHQVSLVPGSWFADLMGEAQIPVNSLHGQGIKTLAKGLAPLAHAEDGLIEAIHAPALSPFLLAVQWHPEWKAKENPHSIKLFSAFGDACRQYRRREG
>CP027856.1|AVP92156.1|447226_448036_+|sugar-phosphatase
MYKLIALDMDGTLLNPHGQITPRTHAAIAAARAQGVTVVLTSGRPLEGMTPYLAELGLNGQDDYVICYNGALVQQVADQRILRSQLLTGSDASAIAHLAAELGVNVHGFSVRQGLISPRISTYTEHESQLIKMPINLVDFATLPADEQIMKVMMIDPEPQLSRAIAQLPAELYERYTVVRSSPYFLEFMNKRSNKGTGVAALAEHLGLTASQVIAVGDAGNDRHMIEYAGLGVAMGNATDEIKALAQHTTARNDEDGVARVIEQFILNA
>CP027856.1|AVP95417.1|445326_446955_+|DUF342-domain-containing-protein
MTYVCLRITPGLTEPVQEQHVLALLRLSNCRRYQPLDEGIRQAVALLNTLLTQPDAPSHPPVPIAQRQDARLLVLVDKDQMSASAQITADWGGSPLTLAQLQEAVAASPIKQGVSERLFAAAIKAASEAAPGARLTPVIALGKAARHGQDTRLERLVETAAERILRPQEVDHGKVDMRDLGTLLTVKAGAPLMRRHPATQGIEGFTVTGQVLPARHGKESAMTAGEGTCFSPEDPDLLLATRAGLPCQERAGMRVDEVLSVKQVDIRHGHVMFEGSLLVTGDVMPGMRIKTSGDVVIGGFVEGGHIESGGTITVRNGIIGRKLEGDQYLCHLNAGGEIHASYAQYARLEADGDIHIQSQLSHSYCRSGQDIRVGDSAMRKGHLIGGINIANRLIMAPVLGASAANRTRLQILGGYFSHKEQEQALRQRKQACREQLDKLQDLILRLLQLPGDKRNPETLKKIKELRTRQLDESKSLDEQLAEAQRELQALMANMDIIATQRLFPGVEVEMAHHHNRVDIEHGPIHFAIREDQLQLTPYEGQH
>CP027856.1|AVP92155.1|444361_444877_-|hypothetical-protein
MTAQGHLLFSVTCALLAHKVELTPALAEGSLWHIVPMALASALLPDLDHPQSLLGRQLPWISGPLSRLFGHRGFTHSLLAVGLGIWGLAQFQAPGPLSGVMKDALIVGYLSHLLGDWLTPAGIPLFWPWRRRFRLPGLPLKSGGGYEKAFCLLTLALAGYWVHGSAGLGAF
>CP027856.1|AVP92154.1|443190_444354_+|competence/damage-inducible-protein-A
MRIEIISTGDEIVTGLVVDTNAAWLSALLLEQGWQVRRRLTVGDNLADLKAALQESANRAEVVLVCGGLGPTADDLTAQAAAEAFGQPLTLFPDWLATMAERYASRGRIMAQSNSKQAWLPRGCEILDNPVGTACGFLVSHPASHGQSRLFFTPGVPFEFKQMVCEQILPRLKALAGEETDTELRRFYTFGISESALSDKLDAAPWPAGIELGYRSSMPLIELKLIGHGASAADMAAAEARLLGEISPWLVGRGNEDPAQQILALLGERPLWLQEGESRGALLAMCHPHPVLEASFSHNLPSELDQLTGSGREPSLTIGSTGPGGVPLLLCADGQRIGQRVKLSHPDPESGRRILAFAALDMLRRHLQGLPVLADYLTLTRTASRID
>CP027856.1|AVP92153.1|441864_443163_+|HD-family-phosphohydrolase
MYSPLPLTSIRLCVSLVSNPMTGIKISVDRLQVGNYVSLPLGWREHPFLFSSFKLKSEEEIELIRRLGLKLVTIIPDKSDAPPKPLDQVHPAPDGTDDLVGRQQEMQQEKARRIEQLQRYRRDLQQCEKHFQQSLAQVRNLMGKIQSRPLNAINEAQELINAMTEQLLSVDEMVLHLVSDSADGNSLQFHSLNVSVLSMLLARECKLPAEAIRQVGMGALFHDIGKLKIPSQILRKTSPLTKPEQNLMAQHPRYGLELLSLASGFPEPAKRIVQYHHEYLDGSGPQGLRGEQLDPLTQIVSLINEYDNLCHLQAKVPYSALGNLYKQRKAQFNTDHLGMLIRLMGIYPPGSVVQLSNGQVGLVMSVNASRLLYPAVLVYDPRIPRQEAAIIDLEQAELTIAKVIHPKRLPPAVFEYLNPRTRISYYFEHNKP
>CP027856.1|AVP92152.1|440832_441780_-|homoserine-O-succinyltransferase
MPIKIPDQLPAAEVLGQENIFVMTESRAVTQNIRPLRVLILNLMPKKIETEIQLMRMLSNSPLQVDVDLLRIDDRESKNTPQAHLENFYHDFEQVRGNNYDGMIITGAPLGLVEFEEVVYWPRIVEIIEWSHQHVTSTLFLCWAVQAALKALYGMEKQTHGEKLSGVYRHHRLDEHEPLLRGFDDEFVAPHSRYAAFDGDLIRAHTDLQVFAESEEAGVYLAATKDCRQVFVTGHPEYDALTLDGEYQRDLAAGLTPVIPVNYYPDDNPGQTPRATWRSHGHLLFSNWLNYYVYQLTSYRLEDIGKVFTYEQPKG
>CP027856.1|AVP92151.1|440216_440735_+|protein-tyrosine-phosphatase
MLSAHPFWSLEVPRLDGQLLLTPCPGNQQVVMPLALAQLQLAGAGGVLTLMTKDELAARGAGSLGSLVRARGMAWFHLPIADDEAPDEAFEQAWPPVLPQLLALLREGRHLAMHCHGGSGRTGLVAALLLMTLGQPQPEAMTAIRARRPGAFTLACHRHWLDTRGRRLAGAD
>CP027856.1|AVP92150.1|439585_440056_-|Lrp/AsnC-family-transcriptional-regulator
MRNLDQLDLDILAHLFRDAGMTNKDLAALVGVAPSTCLERVRKLQQDGVLKGAHCEVDYQALGGHIQAMVSLQLARHSRQIIDAFRDAILALPEVISLFHMGGKDDFLVHLCVADTEHLRNFVFDHFTSREEVVHLETSLVFEHRFSRSLPCFTHP
>CP027856.1|AVP92149.1|437563_439528_+|hypothetical-protein
MTKIRHWLGPFWPIAIFSVIALIALSASRAGLGLWQQERVDAVAGWSEMLLQGLRVDFATLCWLWGVPAVFTLLLAGPHALGRAWLQLIRVWLTLGLWLMLFLEISTPAFVTEYGVRPNRLYIEYLIYPKEVLAMLWAGRKGELLLALVFSLLTLGGGWWLSGRLMRHLSFPRWHLRPAFALLILAIGFLGARSSLGHRALNPAMVAFASDPLVNALTVNSAYSLFFAIKQMSNEESAGEFYGELPRERILELVREESGRPGQDFNSETQPSQTFNEASHGGKPKNLVILLQESLGAQFVGSLGGLPLTPNIDALSREGWAFEQLYATGTRSVRGIEAVLTGFTPTPAQAVVKLGKSQTNFFTIADLLKQRGYDTSFIYGGESHFDNMRSFFLGNGFTTIVEQKDFKNPVFEGSWGASDEDLMAKANDTFEKLHKQGKPFFSLVFSSSNHDPFEFPDDRMSLYEQPKATRNNAAKYADYAVGEFFRKAKTSDYWKDTLFLVIADHDSRVGGASLVPIPRFHIPGVIVGEGIAPKQDRRIVSQIDMAPTLLSLMGISADYPMLGKDLTRMPPDWPGRAIMQYDKNFALMRGKDVVILQPERAAEGFIYDDASETLTPAPQPDAMKDAALGLVLWGNLAYQQGLYQTAPDGRLALN
>CP027856.1|AVP92159.1|450234_450945_-|haloacid-dehalogenase
MQFYRRWQPVAAISFDLDDTLYDNGPAIARAEQWMLSHLRSEYLATAMLDKPRWLELKRNLLLARPELSQDVSLARQHGIREAMVQGGMAASRAEQEAERVFAAFLAERSKIEVSQGTHQLLARLAERYPLAVITNGNLDLEQAGLADYFTLVCKAGAGARMKPAPDMFVQVQQALGLAPGQILHVGDHPETDVLGARLHGFKAAWLNERRLPWQSLQLLPDVELATLDELAGLLL
>CP027856.1|AVP92160.1|451148_452102_-|tyrosine-recombinase-XerC
MAKAPLPAAPLPPALAGELTAFIEYLRVERQLSPHTRSNYQAHLEAMAAELVRLGVDDWARLEASQVRSLVTRMHKAGLAPRSLATKVSALRSFCDWQVRQGRLPANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLADVKFDERQLRVTGKGSRERVLPMGRMAVEWLQKWLKVRPLLAGDEGEALFVSKRRQRLSARSVQERLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHPRAKRDPDTPEDE
>CP027856.1|AVP95418.1|452094_452745_-|DUF484-domain-containing-protein
MDEATVLEYLARYPEFFQRHGAMLDRIRIPHEHKGTISLVERQLDRQRERIEQLEQEITELMGIASENERIFRVYADLYGELYGCQTLFELSAVMGKAFVQRLRLTGLRLWLSPKKFQLTGPEQRFLADGKQLDQLLGQRLPGTDYYFGRLNQSEKQALFGSDVLVNSVALMRLGDLGVLAFASSDPSHFTPHNDTLLLGQLGRLLQLRLPELVRG
>CP027856.1|AVP92161.1|453003_453834_-|diaminopimelate-epimerase
MLIEFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRITLQLEGENQVTVNMGVPQFEPGKIPFRAQKAEKTYLLRAQDHTVMCGAVSMGNPHCVIEVPSVADAPVETLGPIMERHERFPERVNVGFMEMVSASEIKLRVFERGVGETLACGTGACAAVVLGISQGKLRERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL
>CP027856.1|AVP92162.1|453995_455246_-|diaminopimelate-decarboxylase
MDHFNYDADGQLQAEQLPLQQLADQYGTPLYVYSRATLERHWHAFDQAAGDIPHLICYAVKANSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALEKEILCFNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIEQAPAIYRKAAAMAHIEIKGVDCHIGSQLTELNPFMEAADKLLKLIDELAAEGIHIHHLDVGGGLGVNYGAEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEFLKPGETRNFALIDAGMNDLLRPSLYGAWMNIIEVDSRTTHEKALYDVVGPVCETGDFLGKERTLAIAEGSLLAVRSAGAYGFTMSSNYNTRPRAAEVLVDGDQAHLIREREQLADLWRGEHLLP
>CP027856.1|AVP92163.1|455266_455473_-|hypothetical-protein
MITQFTKCLFAASLSFGLAACGLTGPLYMPPAEQPASTEQAPAQPKTESTPQAASPATATPASEAAPQ
>CP027856.1|AVP92164.1|455546_455861_+|iron-donor-protein-CyaY
MKDHEYHALTDAFFQYVEDVIDEGYPDIDCERAGGVLTLSFENKTKVIINKQEPLHQIWVATRENGFHFELRGDSWIDNRFGDELKALLTRACTTQAGEPVQFP
>CP027856.1|AVP92165.1|455857_456529_+|carboxylesterase
MMAEPSMMDLHPQSARHAVIWLHGLGDSGAGLAPLVDALALPATLPVRHLLPDAPERPITINMGYKMRGWYDIKSFDDPADRAVESHVRESADRIAALLDRLVAEGFAPGNIVLAGFSQGGVIASFTALRYQAKLAGLLCMSTYLAAPEQLVEEMSEAARALPICYMHGIYDDVVSLSMGWDAKNRLEAAGLSLEWHEYPMRHEICRPQLADIRHWLLARLGA
>CP027856.1|AVP92166.1|456622_459142_-|class-I-adenylate-cyclase
MLVKLDTLVARYDELNRLKTQRALDLMSRYGQQVFQLLPVMLHFNHPLLPGYVAGDVPHGIWSFVANEAQQAFIQDLCQNANCQGGLSTHDKSIQGLYSMGSTSSIGQCCHSDLDIWVCHVAGLSQERLALLEQKCQHLSLWAEQRGVDLNFFLIPEDKFRQRNDAQMQGESCGSAQHLLLLDEFYRSAMHIAGKRLLWYLVPAEYDDHYDDYVNGLFAHGKLSQDDWLDLGGFDRIPAEEYFGSALWQLYKGIDSPYKAVLKSVLMEAYSHEYPNTRLLSVTSRDWFQHNEGMHYRLDNYCLMLDKVTNYLKSIGDMQRLDLVRRCFYLKVCDGLSHPKEEHSPDWRREQMAQLVAYWGWSPERLHHLDHRQEWKVEDVKVAYAELLEALMQSYRNLIQFARRNNISESINPEDIGILSRKLYAAFESLPGKVQRINLKIAPDLGEPDLSLVQVPHGRLNRAGWYLYKHSLEPADIIGRAPLEYNGYISKLVAWAYFNGLLTPQSRVHLFNQGSDLHIDNLHQFCRDLSGTFPVKYPRATNLALSRPCEIHQLSIFLNLETDPSSHWVGQVIEFDANAADVFSFGRNQECLVGSVDLVYRNSWSEIRTLHFQGEEAVVDALTTILGKMHQDAAAPEMIEVFCYSQHFRSLVRTRFQQLVAECIELRLARDKQQLVKTLALGREKYGIFFERRGVSVKKLENAIDFYRHISHNKLDHLPLRLDKTHSQHLPGIVDTYASEGLVQFFFDTRDAGTNIYILDEANRVEIYQHFAGNKDELVQGVNRFYTSGHERFSDAGQFSNFNLPQYYEIVQMGDKLEVIPYRSQNPQRDNPGAAREVG
>CP027856.1|AVP92167.1|459446_460394_+|hydroxymethylbilane-synthase
MKQLIDMAARTLRIATRKSPLALWQANFVKDRLEALYPDLRVELVPMSTQGDKILDTPLAKVGGKGLFVKELETAMLEGRADIAVHSMKDVPVEFPEGLGLHTICEREDPRDAFVSNRFQQIDELPQGAVVGTSSLRRQCQLRAARPDLVIRDLRGNVNTRLAKLDAGEYDAIILAAAGLKRLEMAHRITAFIEPEQSLPANGQGAVGIECRQDDHELHALLAPLEHAETRIRVLTERAMNRALQGGCQVPIGAYALVQGDEVWLRGLVGSPDGTQVIRDEIRGPLADGEALGHALAQRLLAAGADLILAEVYRA

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Crispr_ID: CP027856_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_5

527216-527323

Orphan

Consensus_repeat	Method
CCTGCAAACCGAAATGGTTCAGGTACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_5

>merge|CP027856|5|527216-527323|CRISPRCasFinder
CCTGCAAACCGAAATGGTTCAGGTACATATCCCCTCCCGGTCCCCGTCACGGCCAACGCCGATCAGGTCGAAGGAGAACACCTGCAAACCGAAATGGTTCAGGTACAT

>CP027856|5|5|527216-527323|CRISPRCasFinder
CCTGCAAACCGAAATGGTTCAGGTACAT	ATCCCCTCCCGGTCCCCGTCACGGCCAACGCCGATCAGGTCGAAGGAGAACA
CCTGCAAACCGAAATGGTTCAGGTACAT

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95426.1\|529463_530111_-\|MSHA-biogenesis-protein-MshJ	unknown	unknown	gnl\|CDD\|309474
CP027856.1\|AVP92217.1\|521532_521994_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP92229.1\|538058_539591_-\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
CP027856.1\|AVP92227.1\|532771_534691_-\|RNase-E-specificity-factor-CsrD	unknown	unknown	gnl\|CDD\|236833
CP027856.1\|AVP92228.1\|536899_537997_+\|calcium:proton-antiporter	unknown	unknown	gnl\|CDD\|182580
CP027856.1\|AVP92214.1\|519778_520255_-\|MSHA-biogenesis-protein-MshC	unknown	unknown	gnl\|CDD\|225076
CP027856.1\|AVP92225.1\|530810_531674_-\|MSHA-biogenesis-protein-MshI	unknown	unknown	gnl\|CDD\|227306
CP027856.1\|AVP92222.1\|527406_529086_-\|pilus-(MSHA-type)-biogenesis-protein-MshL	unknown	unknown	gnl\|CDD\|274176
CP027856.1\|AVP92212.1\|518446_519217_-\|MSHA-biogenesis-protein-MshO	unknown	unknown	gnl\|CDD\|225076
CP027856.1\|AVP95425.1\|517986_518406_-\|MSHA-biogenesis-protein-MshP	unknown	unknown	unknown
CP027856.1\|AVP92223.1\|529156_529471_-\|MSHA-biogenesis-protein-MshK	unknown	unknown	gnl\|CDD\|339769
CP027856.1\|AVP92215.1\|520310_520778_-\|MSHA-biogenesis-protein-MshA	unknown	unknown	gnl\|CDD\|225076
CP027856.1\|AVP92216.1\|520796_521456_-\|MSHA-biogenesis-protein-MshB	unknown	unknown	gnl\|CDD\|225076
CP027856.1\|AVP92218.1\|522139_523360_-\|MSHA-biogenesis-protein-MshG	unknown	unknown	gnl\|CDD\|224376
CP027856.1\|AVP95427.1\|535362_536730_+\|diguanylate-phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
CP027856.1\|AVP92219.1\|523363_525073_-\|MSHA-biogenesis-protein-MshE	unknown	unknown	gnl\|CDD\|225363
CP027856.1\|AVP92224.1\|530110_530704_-\|MSHA-biogenesis-protein-MshI	unknown	unknown	gnl\|CDD\|377469
CP027856.1\|AVP92213.1\|519216_519792_-\|MSHA-biogenesis-protein-MshD	unknown	unknown	gnl\|CDD\|227302
CP027856.1\|AVP92226.1\|531743_532691_+\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|225313
CP027856.1\|AVP92220.1\|525204_526356_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP92220.1\|525204_526356_-\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	9.15801e-09
CP027856.1\|AVP92229.1\|538058_539591_-\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
CP027856.1\|AVP92227.1\|532771_534691_-\|RNase-E-specificity-factor-CsrD	gnl\|CDD\|236833	PRK11059, PRK11059, regulatory protein CsrD; Provisional.	0
CP027856.1\|AVP92214.1\|519778_520255_-\|MSHA-biogenesis-protein-MshC	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	4.85485e-09
CP027856.1\|AVP92225.1\|530810_531674_-\|MSHA-biogenesis-protein-MshI	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	4.56347e-05
CP027856.1\|AVP92222.1\|527406_529086_-\|pilus-(MSHA-type)-biogenesis-protein-MshL	gnl\|CDD\|274176	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL. Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures].	4.27955e-87
CP027856.1\|AVP92223.1\|529156_529471_-\|MSHA-biogenesis-protein-MshK	gnl\|CDD\|339769	pfam16537, T2SSB, Type II secretion system protein B. This is the B protein from some operons of bacterial secretion systems of type II. The exact function of the B protein is not known, though in the case of Vibrio cholerae there is a fusion protein between proteins A and B that includes an AAA domain, a PG_binding domains well as this domain at the C-terminus. Many of the other species have no A or B domain genes in this operon. The type II secretion pathway is conserved in Gram-negative bacteria that are prevalent in bacterial pathogens of plants (Pseudomonas fluorescens, Erwinia or Xanthomonas species), animals (Aeromonas hydrophila) and humans (Klebsiella oxytoca, Pseudomonas aeruginosa, Vibrio cholerae or Legionella pneumophila). Typical type II secretion systems (T2SSs) are encoded by a set of 12 to 16 gsp (general secretion pathway) genes organized into large operons including the conserved 'core' genes denoted C to O and in some bacterial species, as indicated above, extra gsp genes such as gspAB, gspN or gspS. A different nomenclature is used for Pseudomonas T2SSs, so the B gene is referred to as the P protein.	0.00198695
CP027856.1\|AVP92218.1\|522139_523360_-\|MSHA-biogenesis-protein-MshG	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	1.65562e-125
CP027856.1\|AVP92212.1\|518446_519217_-\|MSHA-biogenesis-protein-MshO	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	3.15347e-06
CP027856.1\|AVP92215.1\|520310_520778_-\|MSHA-biogenesis-protein-MshA	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	6.02316e-12
CP027856.1\|AVP92216.1\|520796_521456_-\|MSHA-biogenesis-protein-MshB	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	4.24666e-08
CP027856.1\|AVP92228.1\|536899_537997_+\|calcium:proton-antiporter	gnl\|CDD\|182580	PRK10599, PRK10599, sodium-potassium/proton antiporter ChaA.	1.0947e-99
CP027856.1\|AVP95427.1\|535362_536730_+\|diguanylate-phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.8544e-85
CP027856.1\|AVP92219.1\|523363_525073_-\|MSHA-biogenesis-protein-MshE	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP027856.1\|AVP92224.1\|530110_530704_-\|MSHA-biogenesis-protein-MshI	gnl\|CDD\|377469	pfam05137, PilN, Fimbrial assembly protein (PilN).	0.00189944
CP027856.1\|AVP92213.1\|519216_519792_-\|MSHA-biogenesis-protein-MshD	gnl\|CDD\|227302	COG4967, PilV, Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion].	7.59804e-06
CP027856.1\|AVP92226.1\|531743_532691_+\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|225313	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism].	1.56736e-58
CP027856.1\|AVP95426.1\|529463_530111_-\|MSHA-biogenesis-protein-MshJ	gnl\|CDD\|309474	pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are involved in the assembly of pilin. However, the precise function of this family of proteins is not known.	0.00380035

>CP027856.1|AVP92220.1|525204_526356_-|hypothetical-protein
MSVINQMLKDLEQRQPGSDGAAVYVAPARQQGWWMLVLTLLCTLALAILGWRTWIYWQQSQRTAQPTVQLTTEPAPASQAQTQPVSSATEVVAALPEPQGAASGAVALDVAPVAAMARVSAPAGGAEGSSATEAFADEAQAETPSEDEVTPSDEELQPDLYAELAAEQEAAPQEVAAAPRKPGVLKIETVDLSEPELAALAERKATTAMAKGQMREAQDNYYQVLVHDPHNQGAREQLAGLLYGEGRLTEASQVLEEGLRLDPAQADLRLLLARVAISGGDRQKALDWLTGYQPDLAANLDYYATWAGLAQELGQPAQASELYVKLLRQQPDQGRWWLGLGVAEDGQGHRQRALDAYGNAQLHGNLGEASTRWLEQRIAELTP
>CP027856.1|AVP92219.1|523363_525073_-|MSHA-biogenesis-protein-MshE
MAQPRLKMRLGDLLVQEQIISDDQLQLALQQQRQTGRKLGTTLIDLGFISEVQLLQFLARQLDVPFFDLNNLTIDASAVTLLPEVQARRYRALAVNLSDDKVTVAMSDPADLSALDAIAALLSPREMVLAVAREGQLLEYFDRLYRRTREIESFAEQLHEEYQDAGFELGSSNLGAGDEGEATVAKLLRSLFEDAVQVGASDIHIEPDEKVLRIRQRIDGVLHENILNEVRIAQALVLRLKLVAGLDISEKRLPQDGRFAMKVRGRDVDVRMSTMPVQYGESVVMRLLDQSSGILSLAETGMPPAILSRFRRQLKRPHGMILVTGPTGSGKTTTLYGALSELNQASHKIITVEDPVEYRLPRVNQVQVNPKIGLTFSQVLRSTLRQDPDILLVGEMRDNETVEIGLRGAITGHLVLTTLHTNDAVTSALRLIDMGAPGYLVASALRAVVAQRLVRRVCEHCACETAPDQGQATWLSVLSGEEPGQHLYRKGRGCQSCNFTGYSGRIGVYELLELDQAMMDALRRNDAEGFARAAREHEHYRPLALTALDYAREGITSVDEVLRLAEDLG
>CP027856.1|AVP92218.1|522139_523360_-|MSHA-biogenesis-protein-MshG
MGSFNYKGRDSQGQAVSGVLEAASELAAAEQLMRRGVMPTELKAGKAKAAGIDWSLLLEGSVKLEELVVFSRQMYALTRAGIPILRAIAGLEESTHSKPLKRALHTLGEDLGNGRPLSSSMQAHPKVFNSLFVAIIHVGENTGQLEEAFLQLANYFDLELETRKRIKTAMRYPSFVMIAIGIAMVILNIMVIPVFAGMFAKFGVELPLATRILLATSHFFVHYWWLLLAILAGMVFGWRRWVASTQGKLTWHRWQLRLPIVGTIIERSLLARFARSFSMMLKAGVPLNTALTLVADAVDNAYMAGQIRDMRAGIERGESLLRTAGASGLFTPLVMQMIAVGEETGQVDELLHEAAEYYEREVDYDLKSLTARIEPILIGIVAVMVLVLALGIFTPMWDMMRAVRGQ
>CP027856.1|AVP92217.1|521532_521994_-|hypothetical-protein
MSRQSEQDERWLGGYRRMVACLLLLVILATLALSYRSHREEALAVSLSLLGEQFAERAQRLHGRWLDERRPEVLHAEGVAWQFDGRGWPLAVLPLQSPSANCRQLWLTLIGPEDPGLPSWQALASQHGDGCEFGWEGHWLFYRFSDGRVLAKP
>CP027856.1|AVP92216.1|520796_521456_-|MSHA-biogenesis-protein-MshB
MAAKRVSAGQGPGQMAGFSLIELVIVIVILGILAVTALPRFLDVTDEAKKASVEGVSGGFATAVSLVRAQWEAEGRAKQDSLNTVLYDGSRFYLTTPTDSQVSNGELSPGYPMDTAASGAPDVDPANLTAARCLNIWEGLLQNPPKATANFDEVRGSGNDLKFYATVSNNGLNSVCRYYLVNSLSKGSDGRYQDPQGSTDAYMSFSYRPASGQVTTNIN
>CP027856.1|AVP92215.1|520310_520778_-|MSHA-biogenesis-protein-MshA
MKKQSGFTLIELVIVIIILGILAVTAAPKFLNLQDDAKAAAAQGVQAALQSASSLVYSKAALEGVESSNTVKSVSVAGGTVTTLFGYPTADAKGIANAVNLDGWKISGAGSTDAGANVSFYPENTKGDGCFVVYTAATSGGIATAAVSGALDTCK
>CP027856.1|AVP92214.1|519778_520255_-|MSHA-biogenesis-protein-MshC
MQKGFTLIELVIVILLLGILAAFAVPKWLGKGGFETHTLRDELVTRLRLVQTMNMHEGEARCTQLVLEQSRFAHLTQTGSCAPGSIIDKWSADERSRGRVVTTSGDISLPQGSFSFDKRSGRPLSPSTCVTGCNLVVNSGQESARLRIEPEGYIHALP
>CP027856.1|AVP92213.1|519216_519792_-|MSHA-biogenesis-protein-MshD
MPSLKARRGFTLIEFVVGIVLLAIALTGILGLLINQAPQGVDPVQQVRGAQLAQRILGEVLQKSFDEHSDHNGGRFRCGERVGTPAVTYPACTPVADYGPDGGETRPYEFNDVDDFDTAGNWVDANQFTQTDAEGVSDQEYRHYQVRIAVTPDTLFGSSGLGAESIGKRVALTVRLPDQSELAFTLYRGNY
>CP027856.1|AVP92212.1|518446_519217_-|MSHA-biogenesis-protein-MshO
MRAIKGFTLVELVMVILLLGVMATFSSQFIGIGTQIYGDASRREQLMSDARFALERLNRELRDAVPGSVRIEDAAGNPLDQGACLRFWPIATASRYLGSVASGGLTIVEPEVLPREEDEAIIYPLADPALNLEQGCLHGNCVARVISVGSPVSGALPLTVDGAFTKESPGQRIYFSRQQVRYCVTNAALTRASAAIGTDFHESTPALMAEHVRPAPYYFYREPAAFSQSEVGLRMELEQRGERVLFNHKLETLNVP
>CP027856.1|AVP95425.1|517986_518406_-|MSHA-biogenesis-protein-MshP
MIALFVIVIMALLAAAMGRFLVDSGEKNTVEVRGVRALMAAQSGLEIALYQLFPNRSGAELPAACTRVAASRTFDKDPGLSGCRVSVSCNEIQASQGGETSTTYRLTSLGTCGTEAAGANPGFAVSRTLVAEAFDGVMP
>CP027856.1|AVP92222.1|527406_529086_-|pilus-(MSHA-type)-biogenesis-protein-MshL
MKKHHFCLLPLALAVAACTSYQHPEPVQAKDALKQAMKEQTPTAPLTTLPPSVQSELLQLNRPQQPLAVPEKRLRIAAHDVDAVEFFGSLFKGSRYSVAVHPGVAGAISVELKDVTLQEALATVGDMYGFDVQRKGNVFHVYPAGLRTETIPVNYLMMARRGLSRTSVSTGGVTANDNNNNGNNNFDSSGNNNNGNNNLGSSNGDNGNSNNSNGTRIETDSNNDYWSDLRDALQTLIGTGEGRAVITSPQAGLVTVRAYPKELKAVREFLDQSGEHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGGSLLDSPIASTPNQIFRALGGGAGFTISDGNFNVAVSLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYFVTNASTTTTTSGNSAPIVTPNVELTPFFSGIALDVTPQIDEAGRVLLHIHPSVIDTEEQSKTINVGTADPLVLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFTNRRESTKKVELVILLKPTVVEKDTWQKELQRSSELLDKWYPPKG
>CP027856.1|AVP92223.1|529156_529471_-|MSHA-biogenesis-protein-MshK
MAKWLTLLCCLLGPLAQAEVLQDPTAPLAGSGAAASPSKGAGLPRLQSVILGNGPALAVLNGQSYRVGQRIDGFLLVGISADAVVLEKAGKRQTLTLFGSKIRM
>CP027856.1|AVP95426.1|529463_530111_-|MSHA-biogenesis-protein-MshJ
MEMTAQWRAWAQRVAALSLRERVLILLTGTILLGAAGIYGWLDAADTRLSQERQALTAAQRDLEILTLENQGKQARLGRDPNAQVRQQLAGVEASLGRLDAELKAQTVDLIPAHEMPAVLEALLSRSANLHMLALTSLKPEPLMAGEQKANLFKHGIRLQLEGGYFDVYQYLKALEALPRHFYWKGFDYRVVEHPKAAVEMEIYTLSTSKEFIRG
>CP027856.1|AVP92224.1|530110_530704_-|MSHA-biogenesis-protein-MshI
MKHHINLYGAEFRPRRLWASLNQMALVWGGCLLLLIAATFFYGWQQKGVDRELAQVRALLDVQRSEASRLDAALARHQADGQLQQQLVNQREELAAKQALIRQLGSLSLQKSQGYASVMADLARLRDARLSLQRIEISDGHINLSGVAERSQDVPAWVNRFKQTPSLAGKQFGELTLSRDKAGQLAFQLSGIARETP
>CP027856.1|AVP92225.1|530810_531674_-|MSHA-biogenesis-protein-MshI
MKSLFRRSPPSHQVGLLLASDRILLACVEPVPIFTSRAINGPHDWPKAMGELFAQHGLAKSKVRVALAASLYQQIQIDKPAVPDAEMAGALPWAIKDFVNEPVLQLAMDYVDLPTPPAGRPRINVICVPKSRVQQLADAVNGVATLEAIVSDELAMTALYEADQTVRMLLWQPRGQELQLLVFYRGGLCFSRPLRGFVSLTGAHEPDQGMLDGLTLEIQRSLDYLAGQLKLPEPGQMQLAIGSPFIGTLVRHLEQAFGFPVSAMANKAVLAGVEYLCAYGAALGGER
>CP027856.1|AVP92226.1|531743_532691_+|1-aminocyclopropane-1-carboxylate-deaminase
MTNDALTAKRASLGDAILAPARLPSPLHPVHHPLLDAQGVRLWCKRDDLIHPTLSGNKWRKLKYHLQQAQAQGKTHLLSFGGAYSNHIHALAAAGLRSGLRTTGIIRGEADTVSNATLSAAKGWGMDLVFVDRQSYRRRQDPEWLAQFEAPDTLIVPEGGSSPLAIPGVAELVAEVPFSPDLWVLPCASGGTLAGLIAGKREREQILAIAVLKGGAFLHDEVCRLNPAAATTGGWRIAQEHHDGGYARFSPALWQWVQAFSAHTGLPLEPIYSGKAMWGLFRELAAGRIPRGSQVVFIHTGGLQGLAGLREQGRL
>CP027856.1|AVP92227.1|532771_534691_-|RNase-E-specificity-factor-CsrD
MKLTTQLVSFITLCVISAMAVVMLGGVFSFRQMGMELQQNRVDSLVEIIDKQLGVTDDQQALARWLPSLLRASHVVELEIRQDSQRVYWFRDVQQQTDESLLIPYSKAIPNQAGMQAEFKLDRPFKEFEYSMQAMFGISLGVFIVVFGLWYSIRWLRQQLRGAELLAERAQLILDGKLTKLAHDPDDEWPLSASQALTHLLAELADARKERSRFDNFIRSNAFVDKTTGIGNRLFFDNRLENAIMEASVISGGVLLIELAGLEELDPELSGRPSQDLLMEASASIGTFVRKHSGALQARYAGQVFAVLLPNMSESEMVDGASQLLKSLQRLHWPESVNLETAVYLGAVCYQAEDSLLKVQEEAELALKSARLQGHSGWFLYEKSLDEEASNKGTVRWRTLINRRIEEQGISFYLQSVQQERDQVVLQQELLIRLHDEQGRELQAGVFMPMAEKAGLLLPLDRLVVTQTLRLLRQRPESSCPVSLSLSAQNLLNREFQRELFFELFQLPRSINEGLILQLSESQVTRHYEALKRPLRALRMLGCRLAIDHAGQDVVSTQYIKEFEIHFLKLHPSLVREIHLRQVNQMAVRSLVGGCANTQARVIAVGVESGDEWKMLRHLGVHAGQGPWFAEPERLVMPI
>CP027856.1|AVP95427.1|535362_536730_+|diguanylate-phosphodiesterase
MDQSIRSQLSRFAFDCGPADMALLRDPRFYSRHIRLQGLKLASGGGCSSLGEDFPLATVELPPYPEQEQFGLAATQPRFNTEQEVVAYYRKGGNVAYWVLNNSWSHDQLQSPCPGCFYLEFGQQSPGKVTTFFPRGDKSIKQEPGNQSLSFFDPDPQIRQTLWAGKALEEYAKRQARHYGLLYGGALGLLLVAAYWVLRNYRRSLKGLLQAALVRREFVPFYQPIVDSRSRKVVGFEALLRWQRGRELVPPGTFIDYAEEQGLILPMTEQLLERVIADLPWLEPTQWVSVNIVAAHLEQPNLRPLLQRHDWPSPARLTFELTERKPITDIKAAMGEIAQLQEKGYHFKLDDFGTGYGGFAYLQRLGIRQIKIDKMFVDTIGTDDLKRTLLDSIIAFGHESDMEMIAEGVETLEQVDYLHRHGVHLIQGYVYAKPMALHKLKIWLLAWRQSQPGGQ
>CP027856.1|AVP92228.1|536899_537997_+|calcium:proton-antiporter
MKSFIRQEIALPVGLLTLLFFKTLGSDLLTEATPLAVYLPVSLALLAIVTWAIFSVVRHSDALAIKLGEPFGTLILTLSVISLEVVMISSVMLTGDPNPTMARDTMFAVVMLVTNGLVGFTLLFGGWRYHTQNFNLDGVKSYLVAIIPLALLCLVLPNFTRGGTLGSMSSPMSWMLIIISVLLYGVFLLIQTRSHSHFFVDSDHEDHEEHHGILRSNVYHTLLLLAYLVVVILLAKTLAIPINYGVHVLEAPAALGGFIVACIVLAPEAVGAIKAAFNNQLQRAMNLYFGSVLATIALTVPSVLFIGSLLGQEVRLGLSAADMVLLITTLMVCKVTFSSGRTNVLHGATHLVLFVVYLFLMFEHE
>CP027856.1|AVP92229.1|538058_539591_-|histidine-ammonia-lyase
MFELNLKPGKLCLATLRRVSREPVHVSLDSSALPGIHASAAVVTKVIEQNRVVYGINTGFGLLANTRIPVEQLDELQRSIVLSHAAGIGEYMDDATVRLMMVLKVNSLARGFSGIRLTVLEALMTLINAEVYPVVPKKGSVGASGDLAPLAHMSCLLIGEGKARHKGELIDAATALKIAGLEPIALAPKEGLALLNGTQASTAFALEGLFHAEDLFAGAITIGAMSVEAALGSRRPFDARIHEVRGQRGQIDAAACYRHLLVDGSEIGMSHHNCEKVQDPYSLRCQPQVMGACLAQIRHAAEVLVCEANAVSDNPLVFAEDEEILSGGNFHAEPVAFAADNLALAIAEIGSLSERRMALLIDSRMSGLPAFLVNNGGVNSGFMIAQVTSAALASENKTLAHPASVDSLPTSANQEDHVSMATFAGRRLADMAENTRGILAVELLAAAQGLDFRAPLRSTELIELAKGRLREEVSFYDKDRYFSPDIEAAAALLGRASYNDLIPAGVLPSL

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Crispr_ID: CP027856_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_6

820310-820405

Orphan

Consensus_repeat	Method
CCGGCATCGGCTACCGCTTCATCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_6

>merge|CP027856|6|820310-820405|CRISPRCasFinder
CCGGCATCGGCTACCGCTTCATCGGCAGTTGAAGCAGCAACAAGCAGCCCACCCAGTTTGAAACACCGTACCCGGCATCGGCTATCGCTTCATCGG

>CP027856|6|6|820310-820405|CRISPRCasFinder
CCGGCATCGGCTACCGCTTCATCGG	CAGTTGAAGCAGCAACAAGCAGCCCACCCAGTTTGAAACACCGTAC
CCGGCATCGGCTATCGCTTCATCGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP92466.1\|825445_826216_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225130
CP027856.1\|AVP95442.1\|812177_812255_+\|potassium-transporting-ATPase	unknown	unknown	unknown
CP027856.1\|AVP92453.1\|808454_810413_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP027856.1\|AVP92467.1\|826304_827267_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|181818
CP027856.1\|AVP92450.1\|803543_804134_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP027856.1\|AVP92462.1\|822390_822624_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP92463.1\|822906_824160_+\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|236517
CP027856.1\|AVP92454.1\|810489_811839_+\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
CP027856.1\|AVP92457.1\|816234_816750_+\|potassium-transporting-ATPase-subunit-C	unknown	unknown	gnl\|CDD\|376890
CP027856.1\|AVP92465.1\|824763_825177_-\|heat-shock-protein	unknown	unknown	gnl\|CDD\|182691
CP027856.1\|AVP92452.1\|805252_808333_+\|transporter	unknown	unknown	gnl\|CDD\|169983
CP027856.1\|AVP92464.1\|824229_824670_-\|heat-shock-protein-IbpA	unknown	unknown	gnl\|CDD\|182691
CP027856.1\|AVP92469.1\|829732_830836_-\|DNA-replication-and-repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
CP027856.1\|AVP92458.1\|817002_819591_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225115
CP027856.1\|AVP92468.1\|827324_829736_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
CP027856.1\|AVP92456.1\|814013_816077_+\|K(+)-transporting-ATPase-subunit-B	unknown	unknown	gnl\|CDD\|234905
CP027856.1\|AVP92451.1\|804130_805237_+\|efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
CP027856.1\|AVP92455.1\|812266_813946_+\|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl\|CDD\|235494
CP027856.1\|AVP92461.1\|821636_822425_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
CP027856.1\|AVP92460.1\|820416_821544_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340878

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP92466.1\|825445_826216_+\|hypothetical-protein	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	6.54009e-18
CP027856.1\|AVP92455.1\|812266_813946_+\|potassium-transporting-ATPase-subunit-KdpA	gnl\|CDD\|235494	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional.	0
CP027856.1\|AVP92453.1\|808454_810413_+\|histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.52676e-33
CP027856.1\|AVP92467.1\|826304_827267_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	7.25589e-116
CP027856.1\|AVP92450.1\|803543_804134_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.81221e-15
CP027856.1\|AVP92468.1\|827324_829736_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
CP027856.1\|AVP92463.1\|822906_824160_+\|valine--pyruvate-transaminase	gnl\|CDD\|236517	PRK09440, avtA, valine--pyruvate transaminase; Provisional.	0
CP027856.1\|AVP92454.1\|810489_811839_+\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
CP027856.1\|AVP92457.1\|816234_816750_+\|potassium-transporting-ATPase-subunit-C	gnl\|CDD\|376890	pfam02669, KdpC, K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.	1.11815e-63
CP027856.1\|AVP92452.1\|805252_808333_+\|transporter	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
CP027856.1\|AVP92464.1\|824229_824670_-\|heat-shock-protein-IbpA	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	1.34089e-45
CP027856.1\|AVP92469.1\|829732_830836_-\|DNA-replication-and-repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	9.50079e-139
CP027856.1\|AVP92458.1\|817002_819591_+\|sensor-histidine-kinase	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0
CP027856.1\|AVP92456.1\|814013_816077_+\|K(+)-transporting-ATPase-subunit-B	gnl\|CDD\|234905	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB.	0
CP027856.1\|AVP92451.1\|804130_805237_+\|efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.42383e-76
CP027856.1\|AVP92465.1\|824763_825177_-\|heat-shock-protein	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	8.64377e-68
CP027856.1\|AVP92461.1\|821636_822425_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.3523e-30
CP027856.1\|AVP92460.1\|820416_821544_-\|MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.88276e-73

>CP027856.1|AVP92458.1|817002_819591_+|sensor-histidine-kinase
MRDEVRADALLASLEEEHKGKLKVFLGAAPGVGKTYAMLQAVREQAKEGVDILIGVVETHGRQETLALLDKLAIQPRKLHHHRQQRLEEMDLDGLLERKPAIVVVDELAHTNAPGSRHEKRWQDVEELLGAGIDVYSTLNVQHLESLNDLVWQLTGVRVKETLPDQVLLEADSIVLIDLPPKELLGRLKEGKVYVPHQAKAALQSFFSLNNLTALRELAMQTAASHVEGDLQLQWQAAGKTTLPLRGKLMVCLGDQHGSALVRYGHRFAQRRQLPWLVVHIDSKGQRSPELEQALALASHLGAKVLTLSSPAVADALLETAEQQQVSQLLLGKPHNPPWRRSLVQHLLKQAQGFEITLVDTEKNKPGLRLQPLHPKDIRQSLLAIAIMAVTSASAWGLSHWLPPASLPLLFVLGVLATALTTSLVPAILAAVLGFVAHNLLFTAPYFSLSVASHSDLLTLFVLLIVGMTAGRLASRQRQQLVGLRETQQLGNALLSLSQGLATASSPVEVLRQGTQAISLALGQPVFALDEEYQYRAGDEVRGPGQTDKAAIDWCLAQKQSAGAHTATLNAAEAQYHHLTDELVLGIRLASPLASSAEHQLQALLTDIRAALARIDLNERLADSQLQAETDRMRAALLSSVSHDLKTPLATIMGAGSTLQEYGDRISAEDRSELLHSVQEEARRLHSYVQNLLDMTRIGSPDFQLKREWVDLADLVDSARKRLDSSWRQHKLLIHFDQQIPQLYVHGALIEQVLVNILDNASRYSPAGTPIEFKVMLADPDLIIDIIDIGVGIAESDRDKIFNLFYTQPVGDCGSRGTGLGLAISRAMIEAHGGRIWAFAGPNGNGTCMRISLPLSLNSPEV
>CP027856.1|AVP92457.1|816234_816750_+|potassium-transporting-ATPase-subunit-C
MIAIRTLLTLTLLLGVGYPLAVTGLAQLFFPWQANGSQLTDAKQQLVGSALLAQKFERAEYFHSRPSASDFTTIGSGASNLGVSSPLRSEFAKAQGNYQSPAMLTRSGSGLDPHLPLDAVLAQVDRVAKQRGLDPASLTEQVKSSTQAGILGPQVVNILQLNLLLDQHKDA
>CP027856.1|AVP92456.1|814013_816077_+|K(+)-transporting-ATPase-subunit-B
MSKSISIPARTEKVKGKGKKQTSQVVQAMIEAFYRFNPRALFGSPILFTLWLAAVMATVESLLGQPLSGVTPSLAWQLTAWLWLTLWFANFAETLAEGRGKARADSLKAGMSQLQARKVRDPKDGQGEWIPATSLQKGDLVLVRSGEMIPADGEVVAGIASVNEAAITGESAPVIRESGTDRSGVTGNTTVVSDEIWVRVTNNPGESTLDRMIALVEGAKRQKTPNEMALDALLVGLTLIFLLVVATLPWFLDYNGTQVPRLYLLALFITLIPTTIGGLLSAIGIAGMDRLVKLNVIAKSGRAVEAAGDVRTLLLDKTGTITFGNRMADELIPAPGVDPSLLAQAAMLASLGDNTPEGKSILTLAGKSMAKPSQLESDKVIPFSAETRLSGLDRNGHQYRKGAVDAVLNYLSLDRKGVPELILKAVDNIARQGGTPLLVCTHEQLLGVVYLKDIIKPGIKARFQILRHMGIRTVMITGDNPLTAAAIAAEAGVDDFIAEATPEKKLAYIRQEQADGRMVAMCGDGANDAPALAQADVGLAMNEGTQAAKEAGNLVDLDSNPTKLLDVVLVGKQLLVTRGALTTFSIANDVAKYFAILPALFIAAYPQLGALNLMQLGSPESAILSAIIFNALIIVALVPLALRGVNVKGSAASLLRRNLLIYGLGGLIVPFIGIKLIDLVITGLGLV
>CP027856.1|AVP92455.1|812266_813946_+|potassium-transporting-ATPase-subunit-KdpA
MWQEIIYPVAFVLLVLLPAPLLGSYMYRVFEGKSRWLAPVERATLACCGTDGREQDWKSYALSLLAFNGAGFGLLFLILMAQGLLPLNPQQLPGLSWQLAFNTAVSFMTNTNWQAYSGEASLSYFSQMVGLTTQNFVSAATGATVAVALFRGLSRQQTIHLGNFWQDLVRFCLYVLLPMALAMALLLVWQGVPQSLSAYLPFHALEGQEQLLPLGPAASQIAIKQLGSNGGGFFGVNSAHPFENPTALSNWLEMVTLLTIPAALVCTLGRYVKDSGHGRAILSAMTLLFVLGLGLSVYQELQPDPALAQLTTQAGNWEGKESRFGPVLSSIWEVATTSASNGSVNAMHDSFTPLGGMVGMINMLLGEVIFGGVGAGIYGMMLFVLLTVFLCGLMVGRTPTYLGKRLGITEMKWVVASMLVMPVGVLVIGGVTLLMPDAATIMGHDGPHGLSRLIYAYASAAGNNGSAFGGFAAADNWQCVAIGLAMLLGRFGYIIPVLAIAGQLSRASQQDAGEGDFPIRGPLFITLLIITVLLIGGLSFLPVLALGPVAEHLLILGAL
>CP027856.1|AVP95442.1|812177_812255_+|potassium-transporting-ATPase
MNWLYLLLVLALMGYLMRALTRSHE
>CP027856.1|AVP92454.1|810489_811839_+|glutathione-disulfide-reductase
MAQHFDYIAIGGGSGGIASANRAAMYGKKVALIEAKELGGTCVNVGCVPKKAMWYAGQIADALRYGADYGFDTTLNHFSWAKLVESRQAYIGRIHKSYENVLGKNQITVIKGFARFVSSNTIEVDGEQYSADHILIATGGRPEVPTIPGAELGIDSDGFFDLQAQPRRVAVVGAGYIAVEIAGVMQALGSETHLVVRKHAPLRNFDPMIHETLVEIMAQEGPKLHTHAVPRAVVKNADDSLTLQLEDGRHLTVDCLIWAIGREPATDNLNLAATGITLDEQGFIPTDKFQNTAVANLYAVGDNTGRIQLTPVAVAAGRRLSERLFNNKPNEHLNYDLVPTVVFSHPPIGTIGLTEPEAIAEYGESQVKVYRSQFTAMYSALTQHRQPTRMKLVCVGPEEKVVGLHGIGFAMDEILQGFGVAMKMGATKADFDNCVAIHPTSAEEFVTMR
>CP027856.1|AVP92453.1|808454_810413_+|histidine-kinase
MSGIFSKAIGLNGLSYRLLSYILICSTVLALVITVLQLAWDYNKDVTVIEASIDQIEASFLQPISASLWNLDEEQVKVQIEGIMNLPNMQFVMVKEMLGNSEVPLLTQGVEQAQYDISREFSLTYQGEVVGKLFVAATLDQVYQRLIEKSVLILVSQTIKTLVVSLCILVIIYYLVIRHINRIVSYAQKLSLDRLAVELTLEGRPLPRKHPDEFDALAATLNQMRTRLNDEFNARHQAADQLQQERDFSATLINSANMVICCMEPDLNIASINPAAILLTGYHHEELLQHNWLDLFVSEEQRAELAATLADQGSLEDREITMHDQQGSELVLQWTFAPFYEGPNLKYLIGFGYDITPLKKVEREIILFNEQLEGKVAERTRSLSDANDQLGKAYDDLKQAQQTLVESEKMASLGSLVAGVAHEINTPIGISVTASSYLQERVADFKQHLEAKQLSRSYLNEFTQNLDESMQLLQGNLRRASELIASFKQVAVDQSSEARYNFSLADNLHQVVVSLGYKLKKAQCEVDIQCDPKLAIYSFPGSFTQIYSNLILNSIHHGFDGWDRPKKITIRVEQQGDELVIDYSDNGRGIPPEILPRIFDPFVTSKRGQGGSGLGTHIIYNLVVQLLRGRIHCASEPGQGAQFHIRLPIRQN
>CP027856.1|AVP92452.1|805252_808333_+|transporter
MRFTDIFIKRPVLAISLSFLIALLGFQAIFKMQVREYPEVINTVITVNTSYYGASSDLIQGFITQPLEQAVAQADNIDFMTSSSQLGSSTVTAYMKLNTDPNAALSDILAKVNSVRSQLPKEAEDPSVTSSTGSTTAVLYMGFTSPELNSSQITDYLERVIKPQLFTVGGVSKVDLYGGVEFALRVWLDPAKMAAFDLTASDVMTVLNSNNYQSATGQATGYFTLFNGNAETQVSNTDELKRLVVATRDGKVIRLSDIAKVSLEKSHDIYRASANGREAVVLAINAAPTANPINIAHDVLELLPSLKSNMPSTMQVNILYDSTIAINESIHEVIKTILEAAAIVLVVITLFLGSFRAVIIPIITIPLSLIGVVMMMDMFGFSINLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGEEPFRAAIIGTREIAVPVIAMTVTLAAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLRANETPSKFESTVHHLLDRMTARYDSMLHAVMQHRIVVILFAVIVFGSLPLLFKFIPSELAPSEDKGVMAVLGTAPSNANLDYIENTMADVNKVLDDQPEIAYSQVFSGVFNANQAFGIASMVPWSQREASQKEVLDRVAGLVKDIPGMAITTFQFPELPGASSGLPIQFVITTPNSFESLFLIAGEMLAATQANGQFVYSDLDLNYDSATMKISIDKDKAGAYGITMQDIGTTMGTMMADGYVNRIDLDGRSYEVIPQVERKYRLNPESIKGYYVRAADGKSIPLGSLIKIEVVGEPRALPHFNQLNSATIGAVPAPGVAMGDAINWFKATAEEKLPQGYRYDFMGEARQFVTEGNALYATFALALAIIFLVLAIQFESVRDPLVIMVSVPLAISGALIALAWGLATMNIYSQVGLITLVGLITKHGILICEVAKEEQLLHGMNRMQAVMQAAKVRLRPILMTTAAMIAGLIPLLYAAGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYTFLASEHKPLPEFDESIPAKAKGNH
>CP027856.1|AVP92451.1|804130_805237_+|efflux-transporter-periplasmic-adaptor-subunit
MKKWMAIMLLIALALFGSVIGFNMFKQKKIAEFMANRPEPEFPVTAMVTKAQDWVPTIEAIGFIEPNQGVTLSSELAGTIDKISFESGAQVKADQLLLSLDSSVEKANLNASQARLPAARAKFERYQNLYQKNSISRDQLDDAEAAYRSLEADIDSLKGTIARREVRAPFGGVVGLRNVFLGQYLEPGTEIVRLEDTSVMRLRFTVPQTDISKISLGQTVKINVDAYPQTQFDGQITAIEPAVNYQSGLIQVQANIPNNDGQLRSGMFARASIILPTVKDQIVIPQSAISFTLYGENVYVIHEADGVKRAKQVVVKAGERRGNDVHVLSGIKAGDQIVLSGQVRLSNDTKVHVVENDALAVPAQTPML
>CP027856.1|AVP92450.1|803543_804134_+|TetR-family-transcriptional-regulator
MDKKERIFEAAHEILGEQGFYGLSIAAVAKKAKVAAGTIYRYFSDKDDLVRQLYQHTILKCHPLVMEDVQIEEVSYRQYRRLWLNIDALFASHPNVLKCKLQYESSPLGAELERDPVIMATWAPLERFFEQGRQQGLFIDLPVLVLQALSLSCVVNLVQQRQAHEFELTQEQLETVIRASWNAILNPNYSITGACS
>CP027856.1|AVP92460.1|820416_821544_-|MFS-transporter
MHNKLPPRWLVVGLMMFPQMVETIYSPVLTQIACQFRVSEGLASQTLSVYFLAFAVGVVCWGRLCDLVGRRPAMLAGLLTYGVGTLLALLANEFEVLLLARVISAFGAAVGSVVTQTMLRDSYQGSDLARVFSVMGVALSLSPVLGLVSGGLLAERLGYLGVFSGLLVLAALLLLVAGRWLPETRPASTQRVALGPLAARMARDGGLWRSAALVALFNTMLFGYYSLAPFLFDGLGLRVSDFGYSGILLALATLLGSLLNKQLLGKGWQPSSLIRLACTLALVCGLLVWASQSSLWFLLPMMGTVVAYGVAIPNVLSEALQAYRAVAGSAGALFGLAYYLLLSLGLAVAAGLQDLGLLLAGCGLLALLCSGRRST
>CP027856.1|AVP92461.1|821636_822425_+|AraC-family-transcriptional-regulator
MAFILPDHPFDPDSHAGSVIGIASALGWHDSGLHRHQRHQLLFAQSGCMTMELADRVCLLPPTRAAWLPAGTPHRVLMRGVVAYRSLYFTPHPELPTTMAVLAVNPLLQALIERMALWPWDQPQEEQQRTLALFMEELGQAPRESWQLPLPSDPRLAPWLQEIKRGGALPPRLNRLAEEVGASDKTIGRIFMRETGMNYQAWRQQWRLLRAMELLAESEPISRIAASLEFSSDSAFISFFKQHSGQTPLRHLNSRGESPRRG
>CP027856.1|AVP92462.1|822390_822624_-|hypothetical-protein
MKTLIATLILSSLSLNVMANDNPRPELDSAKLAQEMRTQQQQASHAVVLDAIHNLQPLALDTLVVEVSPAVATHPES
>CP027856.1|AVP92463.1|822906_824160_+|valine--pyruvate-transaminase
MEFSLFGEKFTRHAGITQLMDDLNQGLLNPDAIMLGGGNPAPIPAMLERFQTEAKQLLDNGELIKAMANYDGPQGKDRFTKALAALLKRELGWDISARNIALTNGSQNAFFYLFNLLAGEFADGRKKKVLFPLAPEYIGYADSALAEDHFVAYKPTIEKLADGQFKYHVDFESLEVGDDIGVICVSRPTNPTGNVLTNEEIEHLDQIARDKGIPLLLDNAYGVPFPGIIFSEAKPFWNTNTILCMSLSKLGLPGTRCGIVIADEKIIQAITNLSGIINLAPGSLGPAITIPMIESGEIIALSEQVVKPFYKQKADFAVQLLREAIPDPRFHIHKPEGALFLWLWFEGLPIHCQELYERLKAKNLLIVPGHYFFPGIDDPEWRHSQECIRLNYSQSEELVRRGIAILADEINAIYRGS
>CP027856.1|AVP92464.1|824229_824670_-|heat-shock-protein-IbpA
MRNLDFSHLSSNAVGFERMARELEGLFDQKAAAYPPYNIEKREHDGYRITVAVAGFEREELELETENGTLKVKGRKAAAAGERQFLHQGIAERDFELAFKLSQHVEVQGARLEHGLLTIDLARELPEALKPRAIPIGKPDQLALPS
>CP027856.1|AVP92465.1|824763_825177_-|heat-shock-protein
MRSIDFSPLYRSAIGFDRLANLIESAASNGNAGYPPYNIEQLGDNDYRISMAVAGFTQEELELSFQENLLTVKGNKQADTERHYLYQGIAERGFERRFQLADYVRVKGADLKNGLLHIDLAREVPEAMKPRKIEING
>CP027856.1|AVP92466.1|825445_826216_+|hypothetical-protein
MQITQVRNATLLIHYAGTRFLIDPMLSAKGSLPGFEGTANSQLRNPLVELPLPMTEILDVDAVIVTHDHLDHWDPAAQQLLPKHLPLFVQHQKDADTISASGFKDVRLLSEQAEFAGIRLHQTEGQHGNDQVMAVLAERLGEVSGVVFSHPAEKTLYLAGDTVWNAQVEQALQRHQPEVVILNCGDAQVPGLGSIIMGKEDVAAVYQAAPQATLIASHMEAVNHALLTRHELRDYIGKQGMATRVLVPEDGESIVL
>CP027856.1|AVP92467.1|826304_827267_+|AraC-family-transcriptional-regulator
MPNPIVVAVITFDHFSPFHCAVPCLIFGDTMMPGAYLFELRLCAGDATRQPGSSQGFRIDASHGLEGLIGADIVIIPFWRDPAERPAQPLLDALVAARHRGAQIVGLCLGTYVLAYAGLLEGRRASTHWEFEQDFMGRFPAVRLDTNALYVDDEGLITSAGTAAGLDCCLYLVREHHGSRIANKLARRLVVPPHREGGQAQFIEQPVPASTRDARINQLFDHLRMHLAEPHNLDTLAEHCLMSRRTFTRRFQRATGISVGEWLLAERLRRSQELLETSSHSMDRIAELVGLKTAAILRQHFRTRFGVSPSEWRRTFGGLR
>CP027856.1|AVP92468.1|827324_829736_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDIQVKIHSDGSVSVRDNGRGIPVDMHEEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLLDERDGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVFIAQPPLYKVKKGKQEQYLKDEDALLQYQTSMALDGATLHVNESAPAIGGEALERLVNQHRAVSHLITRMSRRAPDAVLTQLIYQPELNETLLASESDLLAWCQGMEAVLNESNHGIQYQIQVRRDEERSLYVPHAVVRQHGVDREYPISYDFLQSSEYRQLVSLGKEIANLIEEGGFIKRGEKVKPVANFVEAVDWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGADQLFSTLMGDAVEPRRDFIETNALRVANLDV
>CP027856.1|AVP92469.1|829732_830836_-|DNA-replication-and-repair-protein-RecF
MSLVKLQLSDFRNIQHASLALSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGERAFTLFAQCELEGRQVPIGLAKDKGGETQLKIAGAQAQRLADLAELLPVQLIHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQSSQYRQLAFWDQELVRLGGELAEFRASYCQAITPLIKEMTADFLPEFDISLGFYRGWERETPLGDLLEAGFERDRSLGYTGVGPQKADVRLKANGVPAQDILSRGQLKLLVCAMRLAQGLYLNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAIDTGQLADMMDASDCKLFHVEQGKISETLEKAESKL

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Crispr_ID: CP027856_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_7

891769-891864

Orphan

Consensus_repeat	Method
TGCTACGTCATAGCGGGATTGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_7

>merge|CP027856|7|891769-891864|CRISPRCasFinder
TGCTACGTCATAGCGGGATTGCCGCCTGATGTTCAGTACCTGCGGTGGTCGTGAGCCCAGGGTGGATGCCTTGCTACGCCATAGCGGGATTGCCGC

>CP027856|7|7|891769-891864|CRISPRCasFinder
TGCTACGTCATAGCGGGATTGCCGC	CTGATGTTCAGTACCTGCGGTGGTCGTGAGCCCAGGGTGGATGCCT
TGCTACGCCATAGCGGGATTGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95451.1\|895520_895775_-\|modulator-protein	unknown	unknown	gnl\|CDD\|226934
CP027856.1\|AVP92515.1\|888513_889533_+\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
CP027856.1\|AVP92510.1\|884475_886116_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	unknown	unknown	gnl\|CDD\|235310
CP027856.1\|AVP92520.1\|898712_899039_+\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|181812
CP027856.1\|AVP92507.1\|882663_883041_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|172685
CP027856.1\|AVP92508.1\|883106_883859_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
CP027856.1\|AVP92514.1\|887724_888510_+\|hydrolase-TatD	unknown	unknown	gnl\|CDD\|182449
CP027856.1\|AVP92523.1\|901658_903128_+\|4-hydroxy-3-polyprenylbenzoate-decarboxylase	unknown	unknown	gnl\|CDD\|236796
CP027856.1\|AVP92519.1\|897309_898599_-\|ATP-dependent-RNA-helicase-RhlB	unknown	unknown	gnl\|CDD\|235314
CP027856.1\|AVP92513.1\|886857_887613_+\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
CP027856.1\|AVP92524.1\|903282_903981_+\|NAD(P)H-flavin-reductase	unknown	unknown	gnl\|CDD\|236142
CP027856.1\|AVP92521.1\|899245_900511_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
CP027856.1\|AVP92512.1\|886408_886861_+\|twin-arginine-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|179334
CP027856.1\|AVP92509.1\|883867_884476_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225706
CP027856.1\|AVP92517.1\|892073_894638_+\|diguanylate-phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
CP027856.1\|AVP92511.1\|886156_886405_+\|twin-arginine-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|179867
CP027856.1\|AVP92518.1\|895805_897296_-\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236826
CP027856.1\|AVP92522.1\|900620_901625_+\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP92506.1\|881308_882571_+\|cytosine-deaminase	unknown	unknown	gnl\|CDD\|181713
CP027856.1\|AVP95450.1\|894698_895451_+\|16S-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|377360

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95451.1\|895520_895775_-\|modulator-protein	gnl\|CDD\|226934	COG4568, Rof, Transcriptional antiterminator [Transcription].	1.24072e-10
CP027856.1\|AVP92515.1\|888513_889533_+\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
CP027856.1\|AVP92510.1\|884475_886116_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0
CP027856.1\|AVP92520.1\|898712_899039_+\|thioredoxin-TrxA	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	5.00979e-60
CP027856.1\|AVP92507.1\|882663_883041_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|172685	PRK14197, PRK14197, fluoride efflux transporter CrcB.	6.14747e-54
CP027856.1\|AVP92508.1\|883106_883859_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	3.73022e-145
CP027856.1\|AVP92514.1\|887724_888510_+\|hydrolase-TatD	gnl\|CDD\|182449	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD.	6.31945e-134
CP027856.1\|AVP92523.1\|901658_903128_+\|4-hydroxy-3-polyprenylbenzoate-decarboxylase	gnl\|CDD\|236796	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase.	0
CP027856.1\|AVP92519.1\|897309_898599_-\|ATP-dependent-RNA-helicase-RhlB	gnl\|CDD\|235314	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.	0
CP027856.1\|AVP92513.1\|886857_887613_+\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	5.27327e-134
CP027856.1\|AVP92524.1\|903282_903981_+\|NAD(P)H-flavin-reductase	gnl\|CDD\|236142	PRK08051, fre, FMN reductase; Validated.	1.6936e-134
CP027856.1\|AVP92521.1\|899245_900511_+\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
CP027856.1\|AVP92512.1\|886408_886861_+\|twin-arginine-translocase-subunit-TatB	gnl\|CDD\|179334	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB.	1.73873e-46
CP027856.1\|AVP92509.1\|883867_884476_+\|hypothetical-protein	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	2.5588e-51
CP027856.1\|AVP92517.1\|892073_894638_+\|diguanylate-phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	6.54775e-94
CP027856.1\|AVP92511.1\|886156_886405_+\|twin-arginine-translocase-subunit-TatA	gnl\|CDD\|179867	PRK04598, tatA, twin-arginine translocase subunit TatA.	1.52443e-36
CP027856.1\|AVP92518.1\|895805_897296_-\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	gnl\|CDD\|236826	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase.	0
CP027856.1\|AVP92506.1\|881308_882571_+\|cytosine-deaminase	gnl\|CDD\|181713	PRK09230, PRK09230, cytosine deaminase; Provisional.	0
CP027856.1\|AVP95450.1\|894698_895451_+\|16S-rRNA-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	7.20811e-143

>CP027856.1|AVP92515.1|888513_889533_+|porphobilinogen-synthase
MAITLPGAFPGRRLRRVRKHDFSRRLVRENQLTVNDLIYPVFVLEGEGQREAVASMPGVDRLSIDLLLIEAAELVELGVPAIALFPVTPLAQKSLLAEEAYNPDGLAQRATRALKARFPELGVITDVALDPFTTHGQDGIIDDEGYVQNDITTEILVKQALSHAAAGADIVAPSDMMDGRIGAIRAALEENGFVNVQIMAYSAKYASSYYGPFRDAVGSAANLGKSNKATYQMDPANGNEALHEVALDIAEGADSVMVKPGMPYLDVIRQVKDQFGVPTFAYQVSGEYAMHMAAIQNGWLKERECVLESLLCFKRAGADGILTYFAKRVAQWLKEDARR
>CP027856.1|AVP92514.1|887724_888510_+|hydrolase-TatD
MIDIGLNLTSPQFAGEQADLVARARAAGVEALILTGTDLAGSRESATLAAEWPGYCFSTAGVHPHDAKSVDEQTLPALRALAALPQVVAIGECGLDYNRDFSPRPVQDAVFDAQLALAAELGMPVFLHCRDAHARFIEILRPWLPRLPGAVLHCFTGSDQELDQCLALGLHIGVTGWLCDERRGQLLREQVARIPAGRLMIETDAPYLVPRDLKPRPKRNEPAFLPHIAQVVAACRGEAPEALLAHTRATSAAFFQLPLLE
>CP027856.1|AVP92513.1|886857_887613_+|twin-arginine-translocase-subunit-TatC
MSQAEQPLISHLVELRTRLLRSISAILLAFVALIYFSNDIYDFVARPLLSQLPEGTSMIATDVATPFITPIKLTLVVSFFVAIPYLLYQAWAFIAPGLYQHERRLVMPLVASSAVLFYAGMAFAYYVVFPLVFGFFTSTAPAGVTVATDIASYLDFVLTLFFAFGVAFEIPVATILLCWTGVTTPKSLREKRPYVIVGVFVVGMLLTPPDVFSQTLLAIPMWALWEIGLFFARFYVKKEDEEEQEQPEEGS
>CP027856.1|AVP92512.1|886408_886861_+|twin-arginine-translocase-subunit-TatB
MFDIGFWELVVIGVVALVVLGPERLPVAIRTASHWIKLIRSTANSVKTELEQELKLQELHNDLKKAEQLQMNNLSPELQESIEQLKAAAQSVNRPYQPQHEAQNELRPPVAQAEPATPVEPVVQLTREVPPVNSQREPVSESVGKGEVKP
>CP027856.1|AVP92511.1|886156_886405_+|twin-arginine-translocase-subunit-TatA
MGGISIWQLLIIAVIVVLLFGTKKLRGIGGDLGAAVKGFKKALSDDPADAKPEQKDAEFPAKQLNETASSAETAKQKDKDQA
>CP027856.1|AVP92510.1|884475_886116_+|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB
MTPKEFKRLYRIVSILLEQGIDELVPARYQPWPGRLVRRSLFWLKNKQPELCRGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQEARRQIEASLGCPIETLFDDFDETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARFVPQSARLRPVEVVEEYRKTILDELNLMREAANAIQLRRNFTGSEALYVPEVYTDHCREQVLVMERIYGIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSFEHPENPLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYQRVAQLHVESGWVPPDTKVDEFEFAIRTVLEPIFEKPLSEISFGHVLLNLFNTARRFNMQVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYLESWMHEQVGPKAVLNAIREKAPFWAEKLPELPELVYETLRQARHQQHHFEQMFADFRLHSRRQGQARYLLGVGASLLLVGVFLLTQKQHIEWGQISLAGAGLCWLLGWLKTRIH
>CP027856.1|AVP92509.1|883867_884476_+|hypothetical-protein
MPMDAMVTAVIETSLNQLLALDKQSPARLRKLAGKVLKLELRELKPLWFVFSERRLDVLARYEGEPDAVLSLSLTAIGLLKDPSALTRYIREEKLDLSGDPQLVQAFSALLGELDIDWEEELSRYTGDVLAHTLCGGARQARRVVGRELCRSQRQLAEYLTEEARLAPGPLEVASFNDDVEVLAQHMKAVELRLARLEQQVS
>CP027856.1|AVP92508.1|883106_883859_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSEQTNTTHFGYKTVAATEKETLVAGVFHSVAAKYDLMNDLMSFGIHRLWKRFTIDCSGVRKGQKVLDLAGGTGDLTAKFSRIVGETGQVVLADINDSMLKVGRDKLRNLGVANNVSYVQANAEALPFPDNHFDVITIGFGLRNVTDKDKALASMFRVLKPGGRLLVLEFSKPASEVIAKLYDLYSFKLLPKMGEIVANDGESYKYLAESIRMHPDQQTLAGMMEQVGFEQVEFYNLTQGVVALHRGYKF
>CP027856.1|AVP92507.1|882663_883041_+|fluoride-efflux-transporter-CrcB
MQTWLFVAAGGAIGACLRFGIAELMALLLGRHFPYGTLVVNVVGSFIMGVAYALILHGHVAEHPLKPLLMVGILGALTTFSSFALDTVVLAQHGAYLKALLNIGLNLFLCLAMVMLGMQLVASRV
>CP027856.1|AVP92506.1|881308_882571_+|cytosine-deaminase
MLIKNVRLSGREGLWQILCQDGLIRTIAPMSQILLSTRELDGEEGMAMAPFIEPHIHLDTTQTAGEPSWNLSGTLFEGIERWAERKALLTHEDVKRRAIQTLKWQIANGIQFVRTHVDVSDPNLVALKAMLEVREEMKGWVELQIVAFPQEGILSYPNGKALLEEALRLGADVIGAIPHFEFTREYGVESLHYVFDLADKYQVLVDVHCDEIDDEQSRFIETLATLAYERGIGHRVTASHTTAMHSYNGAYASRLFRLLKMADINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLEANINVCFGHDDVFDPWYPMGTANMLQVLHMGLHVCQIMGYEQINDGLKLISSHSARTLNVQDRYGIEVGKPANLLILPAENGFDAVRRQVPVRYSIRHGRVIAETRPAQTALHLDQIEPVDFR
>CP027856.1|AVP92517.1|892073_894638_+|diguanylate-phosphodiesterase
MRRALESVYQIISSLSHSSGQGYFDTFVSEIANAVGADFVLVSGKDQAGLFFTVHAAYPASLDINSYSFPLADTPGEIAMQQGEAWFSDRTRELFPHAAVLERCQVRGYAGVALKSAEGETIGLCSVMFKRATPRMDKIMGLLRLLAPLAGRELALMYQQQRQSLPAQPECPDFLDTMMSHAPVGIGKLDLNGTILWVNPAIEKMLGYSQQELLRLTVAELNHPDDWLTSIPLYEALKRGERPAFTQEKRYLHRDGSVLWGRVTVTLIRNEQMHPDYLMVVLENIDPMKRHAEQLKLSHRVYDNLSEAILVCDADSRIISVNPAFEKITGYSEEEARGQRPSLLKSGLHDQTFYADMYHALERVGIWRGEVWNKRKNGKLYPQQLMISALREGGRISQYIAIFSDLSQTKLAEQKIAAQANYDNLTGLPNRWLFGRCLARFCERGERFALMVLDLNNFKAVNNSMDHHVGDALLREVSDRLVSRVRTEDLVARIGGDEFAFLVPGIVNRRQAEVFAKQVIGGFARPFMLANQHLYVTATLGITLCPNDGADSDELLRNAEQALFVAKRQGRSLGTYSASMREEVSQRHQMQQDLAEAIKLAQLTMAYQPIWDNRSGRVAKLEALVRWYHPHWGQVSPADFIPLAEEAGLIQGLGALVLWQSCRDLARLQQSGFPDLQMSINRSTLEFQTIDPEANEWLRVIRHFDLDPADIIIEITESLLMESSDQHRVRIDALREAGCKLAIDDFGTGYSALNYLRTFPVDLVKIDRSFVRHIPFNEQDRLLLDGIISIVHNLGMQVVIEGVETREQLNFLCQKGCAFTQGYLLSRPLPYDDLVEYLTLNRQGMNLANLTTVS
>CP027856.1|AVP95450.1|894698_895451_+|16S-rRNA-methyltransferase
MQVFSEVPARDGELDALRLRLAEVEFPAPFALVLTDTRLELRKLDEPKLGAVYVDFVEGAVAHRRKFGGGRGQSIAKAVGLKSGAMPTVVDATAGLGRDAFVLASLGCKVTLIERSPVVAALLQDGLARAAQDLEIGSWVSERMHLLQGPAVDNLLALSERPDVIYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADALLPAALKMANKRVVVKRPAYAGWLNEHKPSMAIETKGNRFDVYVMAALVAG
>CP027856.1|AVP95451.1|895520_895775_-|modulator-protein
MPDYQPISCDLYDWLEIAARWQLPVTLANRDGRRWADLIRTIAASDGVEYLLLESDERLSLADLATLDLVWQGEARHIRFAPAR
>CP027856.1|AVP92518.1|895805_897296_-|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase
MHNSPLYAAIDLGSNSFHMLVVREVAGALRTVTKVKRKVRLAAGLDPEFRLSRAAMERGWDCLRLFSEQLQDIPSDNIRVVGTATLRLATNVDEFLSEAERVLNHSIEIISGEEEAKTIYEGVSWTSAGEGNRLVIDIGGASTELVIGEHSEAKLLNSLHMGCVTWLNNHFGDGELSEARFQQAIAAAKTVLEKVAEDYRILGWRTCVGASGTVQALQEIMLAQGKSERVTLPKLQELMGQAIACGRLDRLQLEGLAAERLTVFPSGLAILIAIFETLNIESMTLAGGALREGLIYGLLGNNHDCDARDRTADSLISRYQLDKEHAERVRDTAVEAFNQLQPAWRLSKRYGRPILRYAALLHEIGLCIEYKKAPQHAAYIIDNIDMPGFTPAQKKLLSALLFNQRDEFKLDTLEKQGAVTGRQAIRLARILRIALILCMRRTQGTVPSFTLQAEEESLTLTLPKGWMDEHYLRASELRLEVERQQKMGWPTRVQEA
>CP027856.1|AVP92519.1|897309_898599_-|ATP-dependent-RNA-helicase-RhlB
MSKTHLTTEKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNYLLTHPLTRPRLVNQPRAIIMAPTRELAVQIYNDAEGMSASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLGNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPATERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGVRIKEELFYPSNEDKMLLLLSLMEEEWPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTLDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNLPAIEEYIHHAIPVSKYDRDSLLDDVTAPKRVFRNRQPVNRNMRDRQGGGNSNNRRRPPRKN
>CP027856.1|AVP92520.1|898712_899039_+|thioredoxin-TrxA
MSDKIVQLSDASFEADVIKADSPVLVDFWAEWCGPCKMIAPILNEVAQEYAGRVTVAKLNIDHNADTPPKYGIRGIPTLLLFKNGEVAATKVGALSKTQLKEFLDGNL
>CP027856.1|AVP92521.1|899245_900511_+|transcription-termination-factor-Rho
MNLTELKNTPVSELVQLGESMGLENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRPPKEGERYFALLKVNEVNYDRPENVRNKILFENLTPLHANERLRMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVYPAIDITRSGTRKEELLTAPDELQKMWILRKIIHPMGEIDSIEFLIDKLAATKTNDEFFDSMKRQQK
>CP027856.1|AVP92522.1|900620_901625_+|hypothetical-protein
MKLVFLIGLCWMLAAPVQADSLPPQRAPLVADEGLQGHSEYLNGRLALGQFDAMDALLESLAVGQREYLLHQLLSGLKSSDAPSPDLLAWVRKQAAKAPQWLVEGEVDGFLVQLPAYDFAAEARLVLNHWQQLAWQDNYRQLLEQNRFDYKQLYYSRNPELARQQQALLTVLDEQPTPVLRREADRLASLNLFLPDNQLLLHLIERTGDTALYLKLWRQPVDHDSLTALHSIPRFHNGQEASDLLIAASRNGRLMIPALQQLSRLSPLPDGAQQYLLAELGKHQYGGLVAGLLLQMDEPRLLGQLADRLTRQERRHASSVMLPDTGTPDARPGL
>CP027856.1|AVP92523.1|901658_903128_+|4-hydroxy-3-polyprenylbenzoate-decarboxylase
MKYKDLRDFIAQLEQTGQLKRITREIDPYLEMTEISDRTLRAGGPALLFENPKGYSMPVLTNLFGTPDRVAMGMGQPNVGALRQVGVWLSYLKEPEPPRGLKELMEKLPIFKQVLNMPTKRLSSAPCQQVVLEGDAVDLDQIPIQHCWPGDVAPLVTWGLTITRGPYKKRQNLGIYRQQKIGKNKLIMRWLDHRGGAIDFREWQEAHPGERFPVAVALGADPATILGAVTPVPDSLSEYAFAGLLRGSRTEVVKALSCELEVPASAEIVLEGYLEPGEMAPEGPYGDHTGYYNEVDEFPVFTITHMTMRRDAIYHSTYTGRPPDEPAVLGVALNEVFVPLLQKQFPEIVDFYLPPEGCSYRMAVVTIKKRYPGHAKRVMLGVWSFLRQFMYTKFVIVCDDDINARDWKDVIWAITTRMDPARDTTLIEHTPIDYLDFASPVSGLGSKMGLDATNKWPGESNREWGQPIVQDEAVKQKIDGIWDELKILD
>CP027856.1|AVP92524.1|903282_903981_+|NAD(P)H-flavin-reductase
MQRIKCRVEELREYVDTIWHVALTPQQAVSFKPGQYLLVVMSDSDKRPFSIANSPTRSGVLELQIGATPENAYAGQVLARMREQGEIEIELAAGKAFLRDESPRPLILMAGGTGFSYARAILEYLIDTGSKRPVFLYWGVRQAHWLYEQGLMQQWERDYAPLTFIPVVQEPQADWTGKTGLVHKAIMDDFVSLHDYDIYVAGRFEMAGAAREEFKVLGAEPERIFGDAYEFI

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Crispr_ID: CP027856_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_8

1056222-1056347

Orphan

Consensus_repeat	Method
CAGCAGCAGGGCCAGGATGGCGATGCGTTGTTTCATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_8

>merge|CP027856|8|1056222-1056347|CRISPRCasFinder
CAGCAGCAGGGCCAGGATGGCGATGCGTTGTTTCATGCAGGATCTCCTTGGGGGCGGCCCTGCCACCCGAGGTAGCCACTGAGCGGGGACAGCAGCAGGGCCAGGATGGCGATGGGTTGTTTCATG

>CP027856|8|8|1056222-1056347|CRISPRCasFinder
CAGCAGCAGGGCCAGGATGGCGATGCGTTGTTTCATG	CAGGATCTCCTTGGGGGCGGCCCTGCCACCCGAGGTAGCCACTGAGCGGGGA
CAGCAGCAGGGCCAGGATGGCGATGGGTTGTTTCATG

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP92642.1\|1045949_1047356_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
CP027856.1\|AVP92641.1\|1044381_1045806_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
CP027856.1\|AVP92646.1\|1051340_1052429_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378925
CP027856.1\|AVP92659.1\|1066747_1067563_-\|undecaprenyl-diphosphatase	unknown	unknown	gnl\|CDD\|234712
CP027856.1\|AVP92656.1\|1064764_1065331_+\|ATP-dependent-protease	unknown	unknown	gnl\|CDD\|225362
CP027856.1\|AVP92651.1\|1058285_1059674_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
CP027856.1\|AVP92653.1\|1061140_1061674_-\|HslU--HslV-peptidase-proteolytic-subunit	unknown	unknown	gnl\|CDD\|235477
CP027856.1\|AVP92648.1\|1053537_1055292_-\|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
CP027856.1\|AVP92658.1\|1066017_1066683_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|131504
CP027856.1\|AVP92654.1\|1061861_1062701_-\|cell-division-protein	unknown	unknown	gnl\|CDD\|237191
CP027856.1\|AVP92652.1\|1059743_1061072_-\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
CP027856.1\|AVP92657.1\|1065404_1066025_+\|RNA-polymerase-subunit-sigma	unknown	unknown	gnl\|CDD\|237127
CP027856.1\|AVP92639.1\|1042683_1043358_+\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	unknown	unknown	gnl\|CDD\|183041
CP027856.1\|AVP92655.1\|1062704_1064450_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
CP027856.1\|AVP92644.1\|1048232_1048550_-\|nitrite-reductase-small-subunit	unknown	unknown	gnl\|CDD\|181921
CP027856.1\|AVP92645.1\|1048549_1051129_-\|nitrite-reductase-(NAD(P)H)	unknown	unknown	gnl\|CDD\|184951
CP027856.1\|AVP92643.1\|1047368_1048181_-\|nitrite-transporter-NirC	unknown	unknown	gnl\|CDD\|183200
CP027856.1\|AVP92640.1\|1043628_1044114_-\|ribonuclease-E-activity-regulator-RraA	unknown	unknown	gnl\|CDD\|236487
CP027856.1\|AVP95460.1\|1057178_1058099_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176149
CP027856.1\|AVP92647.1\|1052431_1053541_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378925

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP92642.1\|1045949_1047356_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
CP027856.1\|AVP92641.1\|1044381_1045806_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	2.0724e-153
CP027856.1\|AVP92646.1\|1051340_1052429_-\|hypothetical-protein	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	4.96697e-28
CP027856.1\|AVP92659.1\|1066747_1067563_-\|undecaprenyl-diphosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.21182e-112
CP027856.1\|AVP92656.1\|1064764_1065331_+\|ATP-dependent-protease	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	2.02718e-31
CP027856.1\|AVP92651.1\|1058285_1059674_+\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.94256e-36
CP027856.1\|AVP92653.1\|1061140_1061674_-\|HslU--HslV-peptidase-proteolytic-subunit	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.17336e-127
CP027856.1\|AVP92648.1\|1053537_1055292_-\|multidrug-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.21914e-96
CP027856.1\|AVP92658.1\|1066017_1066683_+\|transcriptional-regulator	gnl\|CDD\|131504	TIGR02451, Anti-sigma-E_factor_ChrR, anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE. [Regulatory functions, Other].	5.25882e-52
CP027856.1\|AVP92654.1\|1061861_1062701_-\|cell-division-protein	gnl\|CDD\|237191	PRK12757, PRK12757, cell division protein FtsN; Provisional.	1.70047e-23
CP027856.1\|AVP92652.1\|1059743_1061072_-\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
CP027856.1\|AVP92657.1\|1065404_1066025_+\|RNA-polymerase-subunit-sigma	gnl\|CDD\|237127	PRK12526, PRK12526, RNA polymerase sigma factor; Provisional.	3.27219e-76
CP027856.1\|AVP92639.1\|1042683_1043358_+\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	gnl\|CDD\|183041	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter.	2.4258e-131
CP027856.1\|AVP92655.1\|1062704_1064450_-\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
CP027856.1\|AVP92644.1\|1048232_1048550_-\|nitrite-reductase-small-subunit	gnl\|CDD\|181921	PRK09511, nirD, nitrite reductase small subunit NirD.	6.06967e-68
CP027856.1\|AVP92645.1\|1048549_1051129_-\|nitrite-reductase-(NAD(P)H)	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
CP027856.1\|AVP92643.1\|1047368_1048181_-\|nitrite-transporter-NirC	gnl\|CDD\|183200	PRK11562, PRK11562, nitrite transporter NirC; Provisional.	2.52947e-174
CP027856.1\|AVP92640.1\|1043628_1044114_-\|ribonuclease-E-activity-regulator-RraA	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	1.97566e-98
CP027856.1\|AVP95460.1\|1057178_1058099_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176149	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.25324e-85
CP027856.1\|AVP92647.1\|1052431_1053541_-\|hypothetical-protein	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	8.52202e-28

>CP027856.1|AVP92648.1|1053537_1055292_-|multidrug-ABC-transporter-ATP-binding-protein
MNAAIQLAGLTKRFGDRVALNAISATIPSGGITGLVGPDGAGKSTLLRLLAGLLVPEAGEIRVLGLDPVREGDALRQRLGYMPQQFGLYEDLSVQENLNLYADLRGVLEPERSPTFERLLAFTDLARFTARPAGKLSGGMKQKLGLACALLGTPDVLLLDEPGVGVDPISRRALWKMVRELAQGGMTVLWSTAYLDEAELCDHVLLMADGEVRTSGTPATLMGAMASRCWLLEAGELDGRERRALLRRALAHPAVMDGTVAGERVRLLLHPGMTPPPLAELQLTNGAFQPTPARLEDAFIDLLGGGPGGESSLAQLMREASLPEGVSPEAVIEARRLTKRFGDFTATDDVSFAVRRGEIFGLLGPNGAGKSTTFKMECGLLRPSSGQALVTGIDLARSPSAARQHLGYMAQKFSLYKQLTVAQNLSFFAGIYGLFGRQQQTRIDAMVKAFALGPWLGQQTESLPLGLRQRLSLACALLHEPPLLFLDEPTSGVDPVTRREFWSHINALADHGVTVLVTTHFMDEAEYCDRIALIYRGRLLALGTPDELKASAAGGNPLSLPTSSLPTMEEAFITLVEQASEEDA
>CP027856.1|AVP92647.1|1052431_1053541_-|hypothetical-protein
MSINRRRLLALCHKESLQIVRDPSSILIAFIMPVVLLVVMGYAINLDVDHLRLGIWRTDGGAPAIRLEQALRGSNALEVQGGPSKEVLLGSLERGEIRGLLVIDEGFSRAMAGQGGGTPRVLLLTDGSEPNTANFVTNYVQGIWQGWLVREGVSLPVAVESRAWFNPALVSRNFLVPGSIAVVMTIIGALLTSLVVAREWERGTMEALLATPVTKTELLLSKLLPYYGLGIAAMLICLLFSVAVMGVPWRGSLISLFVLTTLFLGSALGLGLFLSTVMRSQFNAAQAALTAAFLPAMMLSGFVFEIASMPPLLRAITHLIPARYFASSLQTLYQAGNVLSILLVNGVCLLLLAAFWLALTARKTRRTLE
>CP027856.1|AVP92646.1|1051340_1052429_-|hypothetical-protein
MLIRLWWLIRKELQALMGNTQGRFLLIMPVLLQTALFPFAATLEVTGNTLAIYDQDGGAQSRELIERLTHMPAFTTVMPVAGEAGMTDAITGQQALIGLIIPQDFSRRLARGDTAKVQLIIDGRRSNGGQVAAGYINQVIARWQSEGKGLPTLTVRHLYNPNIEFSWHILPSLVAIITTIGCLIVTALSVAREREEGTFDQLLVSPLTAGWIMAGKAVPGILVAVGQGTIVALAARFLYQVPFGGSTTLLMAGMVCYGLALAGIGLFVSSLCSTQQQAFLGVFSFMVPAVILSGYVSPIENMPLLFQWLAAVDPLSHFILLLKGVFLKDLGWSAAWPLLWPLLAIAGVSLSLALAMFRRHIA
>CP027856.1|AVP92645.1|1048549_1051129_-|nitrite-reductase-(NAD(P)H)
MMFYYSKSEAIMSKVRLAVIGNGMVGHRFIEELIERSEPDRFEITVFGAEPRPAYDRVHLSSYFSHHTSEDLSLVKPGFYEKHGIRLLLGEAVKKIDRANREVHSNKGTVVGYDKLVLATGSYPWVPPIQGSQHHECFVYRTIEDLKAIRSAAKSGKSGVVVGGGLLGLEAAGALKALGLETHVVEFAPVLMAEQLDGQGGQLLRRKIESMGVQVHTSKSTSEILMHGGRDAQHRLAFADGSTLDVDVVVFSTGIRPQDTLGRYCELAIAERGGVLIDDHCLTSDPDIYAIGECAAWQGRFFGLVAPGYKMAQVTVDHLLGGDSRFEGADMSAKLKLLGVSVGSIGDAHGRTPGSHSYVFQDDQAGVYKKIVVSEDNSRLLGAVLVGDVDDYGNLLQLMLNALPLPSHPDTLILPAYAGAKPTLGVDALPSTAQICSCFDVSKGDIAQAVAEGHTTLAAIKQHTKAGTGCGGCVPLISQVLNAELVKQGIEVNNHLCAHFPHSRQELFHLVKVEGIKSFDELLAKHGQGYGCEVCKPTVGSILASCWNGYVLSPLNTQLQDTNDIFLGNMQKDGSYSVIPRMAGGEVTPEGLLAVAEVARDYKLYTKITGAQRIGLFGAQKDDLPAIWRKLLAAGFETGQAYAKALRMAKTCVGSTWCRFGVQDSVGLGVFLENRYKGIRTPHKMKFGVSGCTRECAEAQGKDVGIIATDAGWNLYVGGNGGMKPRHADLLASDLDRETLIKLIDRFMMFYVTSADKLQRTSVWLGNLEGGVDYLREVIVDDKLGLAETLERDIQTLIDSYECEWSRTLNEEEALKRFSHFINSDKRDPDVQFVAERDQHRPATPAERIPVYQIEVEAK
>CP027856.1|AVP92644.1|1048232_1048550_-|nitrite-reductase-small-subunit
MKLACQLNDILPGTGVCALLEGRQIALFRPSVAAEVFAIDNRDPFFAANVLSRGIVGEHEGELWVASPLKKQHFRLSDGHCLENAAMSVQSYPVEVRDQQVWVAV
>CP027856.1|AVP92643.1|1047368_1048181_-|nitrite-transporter-NirC
MYTDTINKCAANAARINRFERDDKLGFWLSSAMAGAYVGLGIILIFTLGNLVDPAIRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKTGRISMADLLRILPQTWAGNLLGSIFVALIYSYGGSLLPDAGSLAHKVALAKTQAPALTLFMKGVLCNWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSVANMTLFALSWFGAHSDAYTLGGIGHNLLWVTLGNTVSGALFMGLGYWYATPKAERPVAAIDASATTSQTQTA
>CP027856.1|AVP92642.1|1045949_1047356_-|uroporphyrinogen-III-C-methyltransferase
MDYLPIFCRLDNKPVLLVGGGEVAERKARLLLDAGARLTLVSPALDPELATLAADGEIEWLATEFEPAQLAGKWLVVAATDRREVNALVYQSANQARIFANVVDDPKRSSFIMPSIIDRSPLMVAISSGGKAPVLARLLREKLEALLPQHLGAVAAFAGGLRDRVKARFASMGERRQFWERLLGADRLGQALARGDKAAANQLADALFAEDAAAKGEVILVGAGPGDPGLLTLHSLRQMQQADVVVYDRLVSDEVMALVRRDARRIFVGKQAGNHCVPQEGINQLLLEEAKKGQRVVRLKGGDPFIFGRGGEELETLVGSGVGFQVVPGITAASGCAAYAGIPLTHRDHAQSVRFVTAHGKGGARDLDWPLLARDRQTLVFYMGLSSCAVIREQLIAHGKGGDTPVALIERGTQPSQRVIRGTLDQLPELAIGVESPALIMVGSVVTLADKLAWFGQGNDAARIAASA
>CP027856.1|AVP92641.1|1044381_1045806_-|magnesium-transporter
MSLPPKNSAKQREHDRARILTLLLADDALTDSLLDPQGVQDAELRDQTSELTRLVNSLPAADVADALESLPPDERQVLWQQVDPERHGQILVEASETVWDSLISGMSDKALLHALRTLDIDDQIYLGQYLPRNLMGRLLTSMAPDQRDRVREVIRYGKHTVGAMMDFELITVRADISLATVQRYLRQLGKIPANTDKLFVTDRRNRLQGELPLTTVLLHKPETKVEDVMEKNPVTFDPEDNDEAAARTFERDDLVSAAVVDGKGKLMGRLTVAEVVDLVYEESDTDLRRMGGISEEEDVFAPVAKAVKTRWAWLALNLCTAFVASRVIGLFEHSISQLVALAALMPIVAGIGGNTGNQTITMIVRALALQHIQPGNVSFLLWRELGVALINGLVWGGTMGVATYFLYQDAALGAVMTLAMVLNLLVAALMGVIIPMTMSRLGRDPAVGASVMITAITDTGGFFIFLGLATLFLL
>CP027856.1|AVP92640.1|1043628_1044114_-|ribonuclease-E-activity-regulator-RraA
MEYNTSELCDIYQDMVDVLEPMLCSFGGRASFGGVITTVKCFESNGLIREVVKENGVGRVLLIDGGGSMRRALIDSEIATTAAENEWEGIVCYGCVREVDILEDLDIGIQALAAIPVGADHKDVGETDLPVNFGGVTFLPDDHLYADTTGVILSPDALDIE
>CP027856.1|AVP92639.1|1042683_1043358_+|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter
MNLTPAQHQTALVRLSLFHILIIASSNYLVQLPITIFGFHTTWGAFSFPFIFLATDLTVRIFGAGLARKIIQTVMLPALAVSYVLSVLFFEGSYQGVGNLAEFNLFVARIALASFMAYLVGQFMDVVVFNRLRLLRAWWVAPAASTLFGNLVDTIAFFSIAFWRSTDPFMAEHWVEIATVDYVFKLLISLGLFVPLYGVLLRYLSRKLVGEAGLAGLQTATRQA
>CP027856.1|AVP95460.1|1057178_1058099_-|LysR-family-transcriptional-regulator
MNTPDFNLLLTLDALLDEGSVAGAARRLSLSPSAMSRALARLRETTGDPLLVRAGRGLVPTPRALALRAQVSQLVQDAHAVLRPQQEIDPARLVRTFRLRSSDGFVEAVGPALLARLAAEAPGVRLHFLAKPDKGSRPLRSGELDFETGVIGAETAPELRTQALFQDHFVAVVRPGHPLCEGTLTAARYAAARHILVSRRGLEQGPIDEALAHLGLTREAATLVPGFATALALVRGSDLVATVPERHCAALHADLVTLPLPFPLAGIKVALIWHPSQDADPAHRWLRTLIRETCARAPYGGDTRDS
>CP027856.1|AVP92651.1|1058285_1059674_+|MFS-transporter
MSQPKPLPTPAARRLGLLALGLATLLPMLGGSLANMVLPALGQAFAVPFASLQWVLVAYLLGITCLTVVAGRLGDRFGRRRLLLLGLGLFALASLLCALAPTMGWLIAARALQGVAAACMLSLALAMVGQLVQPARRGWGMGLLGTLSACGTALGPSFGGLLTAGFGWQAPFLLLVPLSLLALGCARLGLPRDGSSPRKEGMNLASLSLLVAALLCYGLALTLGGTLALWWGAGALLVTASFVRRERRAPVPLLPLALLGAPGLGSGLVASALVASVMVLTLLIGPFYLRGVFGLGLGTVGLMISGGPLLAALTGMPAGWLVDRLGARQVVRLGLAVMGAAALGLAGAAGQFGPLGYLLPILLLTAGYALFQTANNSAVVGGASEQTRGAVAGLLTLSRNLGQLTGVAGLGGLFAALVGEQGLTLASELVFGTRALFALSALLIGLALWLVGRRREGMLASA
>CP027856.1|AVP92652.1|1059743_1061072_-|HslU--HslV-peptidase-ATPase-subunit
MSEMTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLSEEMRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKLVRETEMEKMKYRAEEAAEERILDALLPNPRNSWGEEEKADNSNTRQIFRKKLREGQLDDKEIELDLAATPMGVDIMTPPGMEEMANQLQGLFQNLGQQQKKKRKIKVKEAMKALIEEEAARLVNPEELKQKAIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHILFVASGAFQVARPSDLIPELQGRLPIRVELTALTTHDFERILTEPNASLTDQYQALMATEGVKIEFTQDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKSGETFVIDTDYVNAHLGALIEDEDLSRYIL
>CP027856.1|AVP92653.1|1061140_1061674_-|HslU--HslV-peptidase-proteolytic-subunit
MTTIVSVRRNGQVVIGGDGQVSLGNTVMKGNARKVHRLYNGKVLAGFAGGTADAFTLLERFEAKLQAHQGNLERAAVALAKDWRTDRALRRLEALLAVADEHKSFIITGNGDVVQPEHDLIAIGSGGNFAQSAAIALLENTELDARTIVEKSLKIAGDICVFTNGNHTIEVLDYSAK
>CP027856.1|AVP92654.1|1061861_1062701_-|cell-division-protein
MATRDYVGNSPRRRAGGRNIKKAAPRRFPVIPALLAGALVVGFGAFLYLINGKGADAPTIEEQVKANKPKAQGNTLPQEKWSYIERLENKQVDIIEPPPQPGVLPPPPAETLTLQPEKLPQPVPTEIPQPGTPLGQVKPFQPQPVQPTKPATGAPVASAQEQVIDQKAERERMEREIRAELERERAEAAKAKAATQTAAADGGRYMMQCAALRSQDSAESLKARIAFGAGLSSSLQVVNGANGTVYKVMVGPFSGKAAVDAANRKLQSSGISGCIPKKG
>CP027856.1|AVP92655.1|1062704_1064450_-|arginine--tRNA-ligase
MKEHIHHLLEQTVANLKSAGVLPADLEARVQVDRCKEKAHGDLATNLAMLLAKPARKNPRELAAAIIEHLPASDLIAKVEIAGPGFINFFFDPSWLAGQVEAMVTSANANVKLPTPQTVVVDYSAPNVAKEMAVHHIRSTVLGDVAARALEFLGHKVVRANHIGDWGTQFGMLIAYLEKMANEHASDMELKDLEAFYTQAKRHYDEDEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQRNYDRLNISLSNKDIMGESMYNDMLPTIVTDLKAKGLAVESEGATVVFLDEFKNKDGEPMGVIIQKSDGGFLYTTTDIACAKYRYESLGADRVMYFIDSRQHQHLMQAWTITRKAGYVPESVPLEHHAFGMMLGKDGRPYKTRSGGTVKLVDLLNEAEERASALLESRNSDLSAEDKAKVVHAIAMGAVKYADLSKNRTTDYIFDWDMMLSFEGNTAPYLQYAYTRIQSIFRKANIDAEALTGHVTLNEEAEEVLAQKLIQFSDAVNGVADKGIPHLLCTYLYELSGNFMTFYEACPINKDGVDEATRNSRLLLCAATAKVLKLGLGVLGIHTLERM
>CP027856.1|AVP92656.1|1064764_1065331_+|ATP-dependent-protease
MTLVLFPLSAHLLPGGIMPLRIFEPRYQRMIAEVREREFALCMLDPRQPDAMRNMYPIATRVRIIDFDLLPDGLLGITVLGVERVRIVDLWQEPDGLRVGEVEPLPPWQSGRLKADQHTLAKALQDVFNDYPEYAALYPEPDWDDASWVAQRWLEVLPIPVEQKQWLVAAKDNQPALSLLSGLLVASH
>CP027856.1|AVP92657.1|1065404_1066025_+|RNA-polymerase-subunit-sigma
MAYTGQPQSAPRRISPPMDNPDGDLTSLLIRVAEHGDKVAFATLFHHFAPRIRSYGMRHLGSEANALELVQETMLLVWQKARLYHPEKGAPTTWIYTVMRNQSFDMLRRRRASKEDLCAEELWPLLEFRAEEEHLSGGEDAVLTRQMADYLATLPEPQQQVVRGIYLQEFSQQELADRLGVPLGTIKSRLRLALQKLKEQVEQGHD
>CP027856.1|AVP92658.1|1066017_1066683_+|transcriptional-regulator
MIKTHPTELMLRAFAADELPLPLAVGVSAHCELCPECAAQVQTLEAELANQLLAPAAPDLGLPAGLDAMLAEILQQPVATVAELAQQVRPAPELRVAGQSYRLPRVLARHHTPKWRHVGAIRQHSLPLDEMGARASLLHIEAGGRIPEHTHKGYELTLLLAGNMQEGDICYQAGDFIWRDASHAHSPHTPDGCLCYTVQDAPVHFTKGLSRLLNGISHRLY
>CP027856.1|AVP92659.1|1066747_1067563_-|undecaprenyl-diphosphatase
MTESYALFVAFVLGIVEGLTEFLPVSSTGHMIIVGHLLGFEGPKAATFEVVIQLGSILAVVVMFWRRLFGLIGIHFGQKPAPGHATLSLVHIILGMLPAVLIGLAIHSWIKAHLFGPETVMYALVAGGILLIIAEKFRPAVTAETLDDISYKQAFGIGLFQCLALWPGFSRSGATISGGMLMGISRHAAAEFSFIMAVPMMMAASGLDLYKSRDFLSMADFPMFAVGFVTAFAVAMVAIKTFLALIRRLDFIPFAIYRFVVAFAVYLVFVA

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Crispr_ID: CP027856_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_9

1525157-1525313

Orphan

Consensus_repeat	Method
TCCGGTGTCAGCACTGTCGGCTTGGGGTTCGGCTGCATGTCCGGGTAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_9

>merge|CP027856|9|1525157-1525313|CRISPRCasFinder
TCCGGTGTCAGCACTGTCGGCTTGGGGTTCGGCTGCATGTCCGGGTAGTCCGGGGGCAGGCAGTGCAGTCCGCAGCACGCCTCTGGCTTGTGCCGGATCACTCCCGATCCGGCGTCAGCACTGTCGGCTTGGGGTTCGGCTGCATGTCCGGGTAGTC

>CP027856|9|9|1525157-1525313|CRISPRCasFinder
TCCGGTGTCAGCACTGTCGGCTTGGGGTTCGGCTGCATGTCCGGGTAGTC	CGGGGGCAGGCAGTGCAGTCCGCAGCACGCCTCTGGCTTGTGCCGGATCACTCCCGA
TCCGGCGTCAGCACTGTCGGCTTGGGGTTCGGCTGCATGTCCGGGTAGTC

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP93041.1\|1529327_1529789_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|377263
CP027856.1\|AVP93036.1\|1524415_1524685_+\|succinate-dehydrogenase-assembly-factor-2-family-protein	unknown	unknown	gnl\|CDD\|225489
CP027856.1\|AVP93042.1\|1529959_1531753_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP027856.1\|AVP93038.1\|1527042_1527624_+\|RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|171347
CP027856.1\|AVP93044.1\|1532680_1533352_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
CP027856.1\|AVP93043.1\|1531756_1532680_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|182787
CP027856.1\|AVP93033.1\|1521487_1521856_+\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93030.1\|1518674_1519100_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93031.1\|1519230_1521006_-\|protein-disulfide-reductase-DsbD	unknown	unknown	gnl\|CDD\|234717
CP027856.1\|AVP95482.1\|1524703_1525102_+\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93040.1\|1528256_1529237_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|236525
CP027856.1\|AVP93045.1\|1533410_1534316_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
CP027856.1\|AVP93035.1\|1522502_1523384_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP027856.1\|AVP93029.1\|1517332_1518637_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP027856.1\|AVP95481.1\|1523390_1524296_-\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
CP027856.1\|AVP93039.1\|1527647_1528235_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|182789
CP027856.1\|AVP93047.1\|1535182_1535920_+\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
CP027856.1\|AVP93046.1\|1534330_1535038_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
CP027856.1\|AVP93034.1\|1521933_1522371_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226610
CP027856.1\|AVP93032.1\|1521002_1521320_-\|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP93036.1\|1524415_1524685_+\|succinate-dehydrogenase-assembly-factor-2-family-protein	gnl\|CDD\|225489	COG2938, COG2938, Uncharacterized conserved protein [Function unknown].	7.53708e-32
CP027856.1\|AVP93038.1\|1527042_1527624_+\|RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|171347	PRK11923, algU, RNA polymerase sigma factor AlgU; Provisional.	1.07564e-115
CP027856.1\|AVP93044.1\|1532680_1533352_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	9.04809e-124
CP027856.1\|AVP93043.1\|1531756_1532680_+\|signal-peptidase-I	gnl\|CDD\|182787	PRK10861, PRK10861, signal peptidase I.	1.7582e-150
CP027856.1\|AVP93039.1\|1527647_1528235_+\|transcriptional-regulator	gnl\|CDD\|182789	PRK10863, PRK10863, anti-sigma-E factor RseA.	8.91506e-52
CP027856.1\|AVP93042.1\|1529959_1531753_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP027856.1\|AVP93031.1\|1519230_1521006_-\|protein-disulfide-reductase-DsbD	gnl\|CDD\|234717	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional.	0
CP027856.1\|AVP93046.1\|1534330_1535038_+\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	4.76578e-58
CP027856.1\|AVP93040.1\|1528256_1529237_+\|transcriptional-regulator	gnl\|CDD\|236525	PRK09455, rseB, anti-sigma E factor; Provisional.	7.22502e-89
CP027856.1\|AVP93045.1\|1533410_1534316_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	0
CP027856.1\|AVP93035.1\|1522502_1523384_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.36819e-40
CP027856.1\|AVP93029.1\|1517332_1518637_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	2.25509e-68
CP027856.1\|AVP95481.1\|1523390_1524296_-\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	3.34892e-97
CP027856.1\|AVP93047.1\|1535182_1535920_+\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	1.24526e-157
CP027856.1\|AVP93032.1\|1521002_1521320_-\|divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	2.17005e-48
CP027856.1\|AVP93034.1\|1521933_1522371_-\|hypothetical-protein	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	3.38852e-50
CP027856.1\|AVP93041.1\|1529327_1529789_+\|transcriptional-regulator	gnl\|CDD\|377263	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC. This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions). In Pseudomonas aeruginosa, de-repression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonisation in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains an ApbE domain pfam02424, which is itself involved in thiamine biosynthesis.	4.23664e-35

>CP027856.1|AVP95482.1|1524703_1525102_+|hypothetical-protein
MPVIPSRRQRMLLLALFLLLFWPVAALIHGWQWGLFLPGWLLGLWLAWRPVTQGRQALLWDGEWLEWQGRRHRLDDRSRILPGVLWLRLQTEEGAERHLWLFSDALAPEHYRALARAIHLAPSNPPASPHNR
>CP027856.1|AVP93036.1|1524415_1524685_+|succinate-dehydrogenase-assembly-factor-2-family-protein
MLSPIEKSRLKWACRRGMLELDVIFMPFFEHEFDSLSEAEQQTFIRLLACEDPELFRWSMGHGVPSDPDFAAMIPLILERNQARHDRLS
>CP027856.1|AVP95481.1|1523390_1524296_-|tRNA-modifying-protein-YgfZ
MPTPVLPAEPTLFPLTDLAITRLTGNDRVKYLQGQVTCDVNALQPGQSTLGGHCDPKGKLWSDFRLLCLDESLLLLTKPSVLARQLPELKKFAVFAKVEIGEFQGQVVGLAGQGTDAWIMARYGLQETGLVEGGMAVRVETDRWLLASESPLALSLPAGDEALWWGLDIKAGIPHLEAVHQGEYIPQMLNLQALEGISFTKGCYMGQEIVARAKYRGANNRALFVLAGQASGPVASGDTLEIQLGDNWRRSGMVLNAWQQDGQLWLTAVLPKDTEADASFRLKQEEGSRLSLQPLPYSLTE
>CP027856.1|AVP93035.1|1522502_1523384_+|LysR-family-transcriptional-regulator
MTPSLEQFKALLAAAETGSFSAAARRLGKAQSVVSTAIANLEIDLGLELFDRSGRYPMLTEAGARISQEAGVLLAQSERLLAIAGELASGIESRLTLAIDDDSHLPWLGALLEEFAGRYPTVELELLFPLMEDVTELLKSGRAQLGISYQKAHPERELVSRSLGSVAMPLVVSPDHPLAHKTPLHESDLQGARQLMVTGRREGTERHRFRLSSQVWWVEGDLGILELVKLGLGWSAVPEFLLHRPLARGELVVLKPDFIPQAELELELQWYRARPLGQAGRWLKEALLARVPR
>CP027856.1|AVP93034.1|1521933_1522371_-|hypothetical-protein
MRNTRDRLRHAIGFELIGLLIAAPLASWVTGVGLNHMGPLALFFSVVATVWNYVYNIGVDRLLLRLQGHTHKTLWQRVLHTFGFEGGLLIVALPVMSWWLDIGLLEALVLDLGFVLFYLVYAFVYNWSYDKVFPIPGQGAQRVTG
>CP027856.1|AVP93033.1|1521487_1521856_+|hypothetical-protein
MFPLYVRKCMTQQNEQQRNRMLSLLREGERRMLVQLAGLLRTSVDEINAELEKEELLSALEQPITVEYLNGVVQHHLFERLHKGDMVAAQRMLNQYQSDLEAMLSQEAAQTEAPADEVKAQA
>CP027856.1|AVP93032.1|1521002_1521320_-|divalent-cation-tolerance-protein-CutA
MTDAILVLCTCPDEASADLLCEQLLNQRLAACINQLPGLTSVYRWQGKIERAREIQLIIKSRQPLFAELERCILAHHPYQVPEILAIPASQGHQAYLDWLTQETS
>CP027856.1|AVP93031.1|1519230_1521006_-|protein-disulfide-reductase-DsbD
MTLRSLLSPLLLLLSLLAAPAQASSQDLLSSLGIEASAQPKFLKVDEAFVLESEQQGNKLLLTLRLADGYYLYRHSISVKGDHLAFEPPVLPAGTEHEDDFFGKTRVFYQELQIPVTLTQVGDSASLKISYQGCTEGLCYPPTDKRIPVQPLAATGDAGQADPADATEAPTGSQQDRLAAALGSQGFWLSIAAFFALGLGLAFTPCVFPMYPILTGIIAGAGQHLSTRRAFLLSFVYVQGMAVTYTLLGLVVASAGLKFQAALQHPYVLIGLSVMFVLLALSMFGLYTLQLPSSLQTRLSGLSNRQQGGSVVGVAIMGMISGLVCSPCTTAPLSGALIYVAQSGDLWLGGAALYALSLGMGLPLLLLGTSGGKLLPKAGAWMDVIKQLFGFALLAVPILLLSRLLSDQVATLLWLGWALLLCGYLYHHNQHRPHSVGKSLGGFVLLLAMMSLVVVGKDLLLPEPGVKASTGAEAPQFIRIKTLDDLKTRLEAARGKPVLLDLYADWCVACKEFEHKTFSDPEVRARFADMVLLQADVTANDDADVDLLNGLNVLGLPTLIFFDRDGNEVSGQRVTGFMGPAEFLGQLDKLR
>CP027856.1|AVP93030.1|1518674_1519100_-|hypothetical-protein
MKKWFIPLLACWLYGCNSGPGEEAIQSQVTARLQADTDPALFEISDFAILGKEERMEGVYLVKVSYRLHFKQGLDQLQVLHDEDLVYDRVGPFQQEMALMELERKYGEFEAGQALAQESQVWMMKTEQGWRLAEPDPAQQG
>CP027856.1|AVP93029.1|1517332_1518637_+|FAD-dependent-oxidoreductase
MQTGRHNGHQEHVASYYAATRNDHQQWPELSGELDADVCIIGGGFTGLNTAINLAEAGYKVVLLEANRIGWGASGRNGGQLIRGIGHDTSQFARWIGEQGVRELDLMGLEAVQLVRERVARFDIDCDLTWGYCDLATKPRHLKGFEEDAEHLASLGYRHELKLVPKGEIRSVVGSDRYIGGMIDMGSGHLHPLNLALGEARAAASLGVALFEQSRVTHIEYGDRVEVTTAHGRCRASYLVIGCNAYLNELNPELGGKVLPAGSYILATQVLEKRLRQRLLPQNMAVCDQNVALDYYRLSADGRLLFGGACNYSGRDPKDIKAFMLPKLLRVFPELAGTAIEFQWGGMIGIGANRLPQIGRLKEYPNVFYAQAYSGHGLNATHMAAKLVAEAIRGESRGFDLFSRVPHMTFPGGPALRSPLLALGMLWHRMKDLL
>CP027856.1|AVP93038.1|1527042_1527624_+|RNA-polymerase-sigma-factor-RpoE
MSDQNLLDEQLVERVQRGDKNAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVEADEAEYYGGGEALQEVATPENLALTDEIKRTVFAAIEALPEDLRTAITLREMEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQPLIEN
>CP027856.1|AVP93039.1|1527647_1528235_+|transcriptional-regulator
MANKEQLSALMDGDLSDMEVLNELGTDPALQDTWARYHLIGDAMRGDLPVNLQLDLSDSIMLALEDEPVILAPKPVQPVAPQVKPAGKVVPLIRRFGQQMGQYAIAASVAAAVIFGVQQYQGNDGMPANPVLNTIPVGGSATPVSVHYPQEGNRATPRQQGLNEQQMQEQRERINAFLRDHQLQQRLLQDKQIQE
>CP027856.1|AVP93040.1|1528256_1529237_+|transcriptional-regulator
MRQSSLILLASLLLICAKASADDLSAEALLQQMQSAVSQQNFELSMVKARQGRLEPIRFSHGVIDGKEVAHLSYLDGKAVEYLQRQNEYTFFENTHEPYTLKGARFPGVWSSLVKMPLPRVLESYDPVLAGRSRVAGLVAQVVRLVPKEADKYGFVLWVDEQSHLLLRVDMVDKEGNLVEQVLGVDLDRQPAPAPWLVTLARSKLPDALALEDAYPAPQQTLSWHLTWLPGGFKVLSQDRHQLVSTSLPVDYMMLSDGVVDLSVYVSRVDPKQAVRQQLIRQGATSLVSFVNEVGVEITVVGEVPTETAKRIAESVQPLARNEAVQ
>CP027856.1|AVP93041.1|1529327_1529789_+|transcriptional-regulator
MSEELATVVAVEGAYAWVECERRSACSGCHQQSNCGTGTVAKAFPLKSQRLRVALTAEVLVGQQIRLGIPQASILRGAALVYVLPLFCLLLGALFGQLWLAPLLSAGEGVTILSCLLGGTVGFLLVRYFSARLEQGEYGPRMLGVVLNTRHLS
>CP027856.1|AVP93042.1|1529959_1531753_+|elongation-factor-4
MKHIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMQAQVLDSMDLERERGITIKAQSVTLNYQAQDGNTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMELEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVRCSAKTGLGVDLVLEEIVARIPSPEGDPDAPLQALIIDSWFDSYLGVVSLVRIKNGSLKKNDKIKVMSTGQVWGVDRIGIFTPKQVDTMGLGCGEVGWVVCGIKDIHGAPVGDTLTQAKNGADKALAGFKKVKPQVYAGLFPISSDDYESFRDALDKLSLNDASLFFEPESSTALGFGFRCGFLGMLHMEIIQERLEREYDLDLITTAPTVVYEIELNNGETIHIDSPAAMPPVNNIKEMREPIAECNILLPQEYMGNVITLCIEKRGVQTNMVYHGKQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYGFKRFETSEMVRLDIMINGERVDALAIITHKENAQYRGRQVVEKMRELIPRQMFDIAIQASIGNQIIARSTVKALRKDVTAKCYGGDVSRKKKLLNKQKEGKKRMKSLGRVDVPQEAFLAILHVGKD
>CP027856.1|AVP93043.1|1531756_1532680_+|signal-peptidase-I
MASTFSLILAIVTLLTGIIWTVDKLVWSKQRAAKIAAARANAGPNIDEKTLAKVAPMPVWIEQTGGVFPVIALVLILRSFIFEPFQIPSGSMMPTLLVGDFILVEKFAYGLRDPVTNTKFLETGSPERGDVVVFKYPLDTRVDYIKRVVGMPGDRVIYRNKELMIRPKCEEQEGKTCPGFKKLDVKFEQRGEFSQMGIPLDRYTEQLGTVSHETLRNPLMPDLVDRYYRQPGTYPDEWVVPEGHYFVMGDNRDNSTDSRFWGFVPEQNLVGKAVAIWISFEFEREEGSSLPSWVPTGVRFNRIGGIK
>CP027856.1|AVP93044.1|1532680_1533352_+|ribonuclease-III
MNIKMNRLQSRLGHVFQDQELLTRALTHRSAGSRHNERLEFLGDSILSLVIADDLFHRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEAVIGAVYLDTDLERVRTLLLGWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTNVKGEAHNQEFTVQCDVDGLDGPLVGVGTSRRKAEQAAAQQALERLS
>CP027856.1|AVP93045.1|1533410_1534316_+|GTPase-Era
MTDTDTTYCGFVAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEDNHQTIYVDTPGLHIEEKRAINRLMNRAATSSLGDVAMVVFMVDGTHWTKDDEMVLGKLRHLPCPVVLAVNKVDNVKEKEDLLPHLEWLGQQMNFAHILPISAEKGTNVEKIREWAKDLLPENNFFFPEDYVTDRSSRFMASEIIREKLMRFTGEELPYSVTVEIERFKVEENGLYHIHGLILVERDGQKKMVIGNKGEKIKTIGTEARLDMERLFQNKVHLELWVKVKSGWADDERALRSLGYGDD
>CP027856.1|AVP93046.1|1534330_1535038_+|DNA-repair-protein-RecO
MLNPAFVIHSRPYRETSQLVEVFTQDSGRFTLVARGSRGPRSPLKGLLQPFTLLTMSWRGKGDLKNLAQVECPDHSLRLGGDRLFYGLYLNELVYYLLEAHTPFPEVFDAYARALMALADGETPELPLRRFEFLLLQALGYAVDFEYAADDDTPIQPELLYGFERELGFVACERAPDPRTLFLGAHLLAFAEGRFDTPPLLQAAKRFSRLALQPYLGKRQLKSRELFLKRRSSLG
>CP027856.1|AVP93047.1|1535182_1535920_+|pyridoxine-5'-phosphate-synthase
MSEIYLGVNIDHIATLRNARGTQYPDPVQAAFVAEQAGADGITVHLREDRRHITDRDVEILRQTIQTRMNLEMAVTEEMIGIACRIKPQFVCLVPEKRTEVTTEGGLDVAGQLDKITDAVTRLAAVGVQVSLFIDADPIQIDAAAESGAPFIEIHTGRYADATTDAERNAEFKRIAAGASYAAGKGLKVNAGHGLHYHNVKAIAAIPELYELNIGHAIIGRAAFDGLAKAVSDMRLLMQEARQGI

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Crispr_ID: CP027856_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_10

1589544-1589652

Orphan

Consensus_repeat	Method
CTCATGCCATCACTCAGGCTGTAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_10

>merge|CP027856|10|1589544-1589652|CRISPRCasFinder
CTCATGCCATCACTCAGGCTGTAGCGCATGGTGGACGCGGGCGGCGATATTGACCTTATCCAGCGCGGCATCATATCCGGATACTCATGCCATCGCTCAGGCTGTAGCG

>CP027856|10|10|1589544-1589652|CRISPRCasFinder
CTCATGCCATCACTCAGGCTGTAGCG	CATGGTGGACGCGGGCGGCGATATTGACCTTATCCAGCGCGGCATCATATCCGGATA
CTCATGCCATCGCTCAGGCTGTAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95487.1\|1577905_1579336_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
CP027856.1\|AVP93095.1\|1594727_1595258_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
CP027856.1\|AVP93091.1\|1591631_1592216_-\|DUF2796-domain-containing-protein	unknown	unknown	gnl\|CDD\|378529
CP027856.1\|AVP93084.1\|1581796_1583521_+\|SLC13-family-permease	unknown	unknown	gnl\|CDD\|223547
CP027856.1\|AVP95488.1\|1594365_1594701_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235188
CP027856.1\|AVP93080.1\|1576331_1576787_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224501
CP027856.1\|AVP93088.1\|1589023_1589497_-\|DUF3299-domain-containing-protein	unknown	unknown	gnl\|CDD\|378700
CP027856.1\|AVP93085.1\|1583570_1584164_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP027856.1\|AVP93097.1\|1596864_1597476_+\|aromatic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|180312
CP027856.1\|AVP93094.1\|1593348_1594227_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93083.1\|1580364_1581792_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP027856.1\|AVP93096.1\|1595491_1596868_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
CP027856.1\|AVP93087.1\|1588037_1588886_-\|TIGR03899-family-protein	unknown	unknown	gnl\|CDD\|274842
CP027856.1\|AVP93081.1\|1576783_1577707_-\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
CP027856.1\|AVP93082.1\|1579444_1580353_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
CP027856.1\|AVP93098.1\|1597555_1598170_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP027856.1\|AVP93093.1\|1592585_1593128_-\|YtfJ-family-protein	unknown	unknown	gnl\|CDD\|370622
CP027856.1\|AVP93090.1\|1590940_1591627_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
CP027856.1\|AVP93092.1\|1592251_1592542_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93086.1\|1586148_1587777_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95487.1\|1577905_1579336_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
CP027856.1\|AVP93095.1\|1594727_1595258_-\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	1.00447e-128
CP027856.1\|AVP93091.1\|1591631_1592216_-\|DUF2796-domain-containing-protein	gnl\|CDD\|378529	pfam10986, DUF2796, Protein of unknown function (DUF2796). This bacterial family of proteins has no known function.	3.84375e-53
CP027856.1\|AVP93084.1\|1581796_1583521_+\|SLC13-family-permease	gnl\|CDD\|223547	COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism].	4.24743e-30
CP027856.1\|AVP95488.1\|1594365_1594701_+\|hypothetical-protein	gnl\|CDD\|235188	PRK03987, PRK03987, translation initiation factor IF-2 subunit alpha; Validated.	0.00606789
CP027856.1\|AVP93080.1\|1576331_1576787_-\|hypothetical-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.63849e-31
CP027856.1\|AVP93088.1\|1589023_1589497_-\|DUF3299-domain-containing-protein	gnl\|CDD\|378700	pfam11736, DUF3299, Protein of unknown function (DUF3299). This is a family of bacterial proteins of unknown function.	2.51473e-57
CP027856.1\|AVP93085.1\|1583570_1584164_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.02816e-137
CP027856.1\|AVP93083.1\|1580364_1581792_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP027856.1\|AVP93096.1\|1595491_1596868_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP027856.1\|AVP93087.1\|1588037_1588886_-\|TIGR03899-family-protein	gnl\|CDD\|274842	TIGR03899, hypothetical_protein, TIGR03899 family protein. Members of this protein family are conserved hypothetical proteins with a limited species distribution within the Gammaproteobacteria. It is common in the genera Vibrio and Shewanella, and in this resembles the C-terminal domain and putative protein sorting motif TIGR03501. This model, but design, does not extend to all homologs,but rather represents a particular clade.	5.57135e-113
CP027856.1\|AVP93081.1\|1576783_1577707_-\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	1.9207e-73
CP027856.1\|AVP93082.1\|1579444_1580353_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP027856.1\|AVP93098.1\|1597555_1598170_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	8.28106e-11
CP027856.1\|AVP93093.1\|1592585_1593128_-\|YtfJ-family-protein	gnl\|CDD\|370622	pfam09695, YtfJ_HI0045, Bacterial protein of unknown function (YtfJ_HI0045). These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.	6.29456e-92
CP027856.1\|AVP93090.1\|1590940_1591627_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.1167e-81
CP027856.1\|AVP93097.1\|1596864_1597476_+\|aromatic-acid-decarboxylase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	4.65218e-125
CP027856.1\|AVP93086.1\|1586148_1587777_-\|chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	7.17317e-62

>CP027856.1|AVP93088.1|1589023_1589497_-|DUF3299-domain-containing-protein
MMKWKIVALLASLLVLPAMAADYKTIDWDVLIPEGEKLLPPPQVNHEDPMSVPQPVGGVNKKLDNQEVRIPGFVVPLEGDAKTITAFLLVPYFGACIHVPPPPTNQVIYVSYPKGAPVDDLWDAIWVKGKMHTVSSSHEMATASYSMEAVEVSVYEE
>CP027856.1|AVP93087.1|1588037_1588886_-|TIGR03899-family-protein
MADLPPKKESAILSSQEQTLRLARSRGIDGMLTRNSDSTFEQRATFRHLADQAARQRNLEAIMVMAARHCEETAAGGEMDSDWLTRFLQLAEDISMVPMQQLWGRIFALEVATPGRFSIRALNTLKEMTQREAQLFQRICALSCHYEGSDEQRLLLGMHKGAGLLSRAKVTRMGLGKYRVPYSALLLLCDLGLMHRGELESGPLPADGVELAFGNQRWRLRQRQSNLTLLYYRLTPIGNELALLLEEPPLEEYLQDLKTLLSTNLQIETLMLAPAGEPDLPS
>CP027856.1|AVP93086.1|1586148_1587777_-|chemotaxis-protein
MRVNQPVTQRERLYPEHQNLISTTDLESRITYANDEFCQIAGFTLEELQGSPHNLVRHPDMPPQAFADMWAHLRQKKSWMGPVKNRCKNGDHYWVNAFVTPIQDASGKVVEYQSVRTAPDDTVKQRAERVYGEMRSGKTPLALRLPPCSHTLGILLCLLPCLAALVALGYQQGPGWPLLLGALSLMLALVINQALSRRLARLETLARSRFDNPLMQLLYTGRVDRLAAVELAMQMNQAEFNAVLARTQQTCQQILTSAQTDLHNAETITDNLQQQQAQTNQVATAITQMAESIREVSHSSTAASDRLDETAGLFREGNLRVQETIEEVEGMHGELMTSKGVITTLATQCRAIDGILDVINNIANQTNLLALNAAIEAARAGEAGRGFSVVADEIRSLAIKTQSSTGEIQKMISLLQGSAGDAEQAMAQGERLSASCRLKAAATGDVLQQISDRLLQVAAGSNQIAQAVQEQSQVTADIDRSVLSIKTLADDSSLGSRHAVQGIVQLVRQLGELDRLVRQFQQHPATQSSSTPLPGGQPLLAR
>CP027856.1|AVP93085.1|1583570_1584164_+|adenylyl-sulfate-kinase
MSNIVWHDHAVDKRSRSEQKGQKPLVIWFTGLSGAGKSTLAGALEQALAARGKHTYLLDGDNVRHGLCGDLGFDDAARQENIRRVGEVAKLMVDAGLIVLTAFISPFRAERDLVRNLVGEGEFVEVFVDAPLAVCEERDPKGLYKKARAGEIRNFTGIDSAYEAPEQPEIHLLNADKPVEALVDELLTALRRRGLID
>CP027856.1|AVP93084.1|1581796_1583521_+|SLC13-family-permease
MTWQQSLVLGLLAALVALLIQGKLRPALLFSGAVLITYLSGLADINAVVAGYTNSALLTLVLLLLVSLAVEKTRIMSWFANLVGTGSFNKVLVKVWFSTAFLSAFVNNTAVVASMLGAVKRNPNHAPSRLLLPMCFAATFGGVLTLIGTSTNLIVNSFLIKMGAPPLGMFDFFMVGAGTLLTGLVAVLLFARHLPEQDTEMSRESGYFLEAKVGAGSPMAGRSVKENGLRSLKSLYLAEIIRGDQVICPVQPEHELHEGDMLLFCGDVESVGVLQELKGLDLYGQHRLNGQHLVEVIVSHSSRLVGQSIKDAEFRTHFDAVVLAVRRGETQLTGGLGQIELHAGDTLLLAPGPKFAGNKSLSREFVVVSGLEASTRLDGKRSAAVVLGFLGVLALSVFDLVPLFKGLLVMLVVLLFSRILTLDEIRRRFPLDIWLVVGGALAIADQLEKSGLARLIADWLMGEFNGSSPLIAFIGIYVFTLVLTELMSNNAAAALAFPMGYQLALSMDVSTMPFILAVLFGASSSFILPYGYQTNLMVYAAGNYKMPDYLKLAVPVSLAYSLGVIVMVPLLFPF
>CP027856.1|AVP93083.1|1580364_1581792_+|sulfate-adenylyltransferase-subunit-CysN
MNNHIQTAISEQGIEAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDSQQIYEDQLKALESDSQKLGTTGEKLDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIISDTPGHEQYTRNMATGASTCDLAIILIDARKGVLDQTRRHSFIASLLGIKQFVVAVNKMDLVEFSQEVFDRISLEYREFAKKLSVDTIHIVPVSALDGDNVVNQSDKLAWYQGETLLSLLESAEVERELERHPVRLPVQYVNRPNLDFRGFAGTLASGILRVGDRLAVLPSGKESTVTRIVTFDGDLEYALPGQAITVTFADEIDISRGDLLVDAAKKPQVTQNVLAHIVWMGEESLQPGRVYDVKLATKKSRGQVEAIRHRIEINKLDELPASELKLNEIGLCEFSLTDPVAFDPYADIRDTGSFILIDRLTNVTVGAGMIVEGLAAKAVAGQYSEFEIELNALVRKHFPHWQALTISNDSGKE
>CP027856.1|AVP93082.1|1579444_1580353_+|sulfate-adenylyltransferase-subunit-CysD
MDRERLTHLQQLEAESIHIIREVAAEFENPVMMYSIGKDSSVMLHLARKAFYPGKIPFPLLHVDTNWKFKEMIKFRDETAKKYGLDLIVHKNPDGLAMDINPFVHGSGKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERVYSFRDKSHRWDPKNQRPELWRVYNSQVNKGESIRVFPLSNWTELDIWQYIYLENIDIVPLYFAAHRPVVERNGIKIMVDDERMPIGPEDEVKQELVRFRTLGCYPLTGAIESNATTLPEIIEEMLLTTSSERQGRLIDHDQAGSMEQKKRQGYF
>CP027856.1|AVP95487.1|1577905_1579336_+|uroporphyrinogen-III-C-methyltransferase
MDYLPMFARLEGRPVLLVGGGEVALRKARLLLAAGARLTLVSPELESDFHEFAGRFTHLAARFDPAHLAGQILVVAATDSLEVNALVYQSANQLGLFVNVVDDPERSSFIFPSIIDRSPLMVAVSSGGKAPVLVRLLRERLESLLPRHLGGLAELSGRVRVKAKRVLASLSDRRRFWERAFASNTLAGLIEKEDWQGAEGWLNEGLDKAQSEVGEVVLVGAGPGDPGLLTLKALQQIQQAEVVLYDQLVSPEILDLVRRDATLVSVGKKAGAHSVPQEETNRLLVEYARAGNRVVRLKGGDPFMFGRGGEELEVLAEEGIPFSVVPGITAAAGATAYAGIPLTHRDHAQSAVFITGHCQKEGKEPDWQQLAATNQTLVIYMGLMRSEHIQQQLVSHGRGQGTPIAIIERGTTARQRVLTGTLADLAVLAEQAVSPSLIVIGEVVALRQQLAWFGEQGGEQAETEASRHELKLVSLA
>CP027856.1|AVP93081.1|1576783_1577707_-|SPFH/Band-7/PHB-domain-protein
MNESLIVLGIFVFLVLATLSAGIKIVPQGFNWTVERFGRYTRTLSPGLNLLIPYVDRVGHKIIMMEQVLDIPAQEVISRDNANVTIDAISFVQVVDARKGAYEVNDLTSAIRNLTMTNMRTVLGAMELDEMLSQRDTINEKLLRTMDAATAPWGIKVTRIEIKDVRPPLALVEAMNAQMKAERQKRAEVLEAEGVRQSKILKAEGEKQSQILKAEGERQAAFLAAEARERAAEAEAKATHMVSKAIAEGDMQAINYFVAQKYTEALARIGEGPNSKIIMMPLEAGSLIGSVAGMAELFNKDGKVGKS
>CP027856.1|AVP93080.1|1576331_1576787_-|hypothetical-protein
MTALFEGLTHWHWLGLGFVLLAIEVLGSVGFLLWTGIAALEVGLILLLWPFGWQAQLLLFAAQSLVTTWAWWRWQHKRDRSSRDAAAPINERMQSYLGRELTLLDEVSQGTSRVHLDDTVWTVRCPVPLPAGSRVKVVGADSHILLVEPLP
>CP027856.1|AVP93090.1|1590940_1591627_-|methionine-ABC-transporter-ATP-binding-protein
MKNAVVEIRDLAFAWPGGEAVLDLPALRISEGERVFIKGPSGSGKSTLLGLLAGIQTANHGTLEVLGQPLARLSGRARDHFRAANLGYIFQQFNLLPFLSVLDNVTAALTFSPEKRARLLGSPEQEARRLLGELQLPDEALHRPVHALSIGQQQRVAAARALIGSPPLVIADEPTSALDTDNRAAFIKLLFEECDKQGSTLVFVSHDPYLEPLFPRVENLQLLNRRAA
>CP027856.1|AVP93091.1|1591631_1592216_-|DUF2796-domain-containing-protein
MKAVTLLLAAAAFGAQANHDEHESHSHGAHEHGHGHLNLVVDGDQLMIELQAPAADLVGFEHAAKSDEEKAQYAEAVARLQQPDALFRLDPAAGCKLTQQALQAAKEEHDHDHDHDHDHDKAASDEHEHHHDEAGHADLGAMYTYTCATPAKLNGLEATLFSLYPSLEKLSMQGILPTGQTAAELTPSANKLSW
>CP027856.1|AVP93092.1|1592251_1592542_-|hypothetical-protein
MGRSTLTIWVLLLGWLWMQPALAQHPLEADLPDHSHACTLCALHLDGKLALTPTPFVPTPSSAIALFIGATLPSVTPTTAGHSRIRAPPHLHCFFR
>CP027856.1|AVP93093.1|1592585_1593128_-|YtfJ-family-protein
MKHLVLTLALLPTLVLAHNIKESAQVPLVNIGDKGELVLKEKEISYQPWQSKVLTGKVFLIQHIAGRSSAKELNAPMIEAIKAAKLPHDKYQTVTIINSNDAIWGTSGFVKSSAEDSKKEFPWSTMVLDAKGMARNAWDLAPESSAIVVLDKEGKVLFAKDGQLDATEITKVMGLIQSHL
>CP027856.1|AVP93094.1|1593348_1594227_-|hypothetical-protein
MKLAQGLMWSLLFGSAAMANEVNLSWQWQSADGQRKHLQLSTDERVLSASRHEMTLLDASLNYPLETLYSYISPRLYNSINQINQNSPETATKFRNLEQAFTLHDNSLESTQFWQAYEQYQEDAFYEMRVLPCVHPANRQLPCVRPNYSQLFYQFKGDLKPLARQFSAKDLATSVNLLQEWLSAIPTPPEQMDHFAPPLQALQDNKADSDEKALLMASLLAELAPQYNLSIIYPGISIGSVSPAWLAITADSGLEGDTLVIDNQRHVLLTGSPLLAQQMTMAQIPLISEPLY
>CP027856.1|AVP95488.1|1594365_1594701_+|hypothetical-protein
MKPVSMCLLILLSLPALAGQVIVNQGMSTADTFALRDQLAREHEWQEWLRFQQAVKWLEVLPVNCDLVGGAGQEYRCGDNYYRPYRQNGRDLYIQGDPPSQSPQRPIKKAP
>CP027856.1|AVP93095.1|1594727_1595258_-|inorganic-diphosphatase
MSLNLVPAGKSLPDDIYVIIEIPQNADPIKYEVDKDSGAIFVDRFMSTPMFYPCNYGYVNATLSLDGDPVDVLVPTPYPLLAGSVIRCRPVGVLKMTDESGEDAKIVAVPHSKLTKQYDHIQDVNDLPELLKAQIQHFFERYKELEAGKWVKVEGWGDKAAAEAEILTSAERYAAK
>CP027856.1|AVP93096.1|1595491_1596868_+|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MHIHILGICGTFMGGLAVLAKQLGYRVTGSDANVYPPMSTQLEQQGIELTEGYDPSQLEPAPDLVVIGNAMSRGNPCVEYVLDRNLPYISGPQWLLEHVLQDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFLIGGVPGNFPVSARLGSAPFFVIEADEYDCAFFDKRSKFVHYHPRTLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPQADDNLGAVRKMGCWSEVELVGQDDAKWKAVKLADDGSAFEVWLDGVKQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKGEVAGISVYDDFAHHPTAIETTLGGLRARVDAVGGQARILAVLEPRSNTMKLGVHKEELAGCFDGADEVFFFQPANIGWDLGEVTAHMSRPAQVFDDLEALINRLVAESRAGDHILIMSNGGFGGIHDKLIARLKQGTS
>CP027856.1|AVP93097.1|1596864_1597476_+|aromatic-acid-decarboxylase
MNKQITLALTGASGAPYALRLLQCLVQADYKVYLLASSAARVVLKTEQQQEWPGSPKELSAYLCRQYGAREGQIVACGKEEWFSPVASGSAAPRQMVVCPCSMGTVSAIANGTSDNLLERAADVVIKERGQLILVPRESPFSAIHLENMLKLARLGVTIMPAAPGFYHEPKSIEDLVDFMVARILDHLGVEHALTSRWGYAKP
>CP027856.1|AVP93098.1|1597555_1598170_-|TetR/AcrR-family-transcriptional-regulator
MEPRAEIRRRTRLSPEARRDQLMECAIEVFSRRGIGRAGHAEIAEQAKVSVATVFNYFNTREDLVDEVLAEIEGFVQQILEQAYNGQGSVRDSIHRHVKLFVDAAYDKPDHASIWLEWSSSVREEVWPRYTRLLDKALERIAPHLQAAMDSGEIQSVLSAQDLARSLTGFGYVMMQMINQPQRPSREEVTDFLFKYVTAPLQVV

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Crispr_ID: CP027856_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_11

1601149-1601260

Orphan

Consensus_repeat	Method
CTATTGTCGATAAGGCGGGCCTTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_11

>merge|CP027856|11|1601149-1601260|CRISPRCasFinder
CTATTGTCGATAAGGCGGGCCTTGCCGGGGTAAGGGTCGGCCATCGGGACTGTCAGTCGTTGCTTGCGCTGATGAGGGTGACGACGCTATTGTCGATAAGGCGGGCCTTGCC

>CP027856|11|11|1601149-1601260|CRISPRCasFinder
CTATTGTCGATAAGGCGGGCCTTGCC	GGGGTAAGGGTCGGCCATCGGGACTGTCAGTCGTTGCTTGCGCTGATGAGGGTGACGACG
CTATTGTCGATAAGGCGGGCCTTGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP93112.1\|1613481_1613892_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319940
CP027856.1\|AVP93099.1\|1598371_1598902_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
CP027856.1\|AVP93105.1\|1603154_1603652_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
CP027856.1\|AVP93098.1\|1597555_1598170_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP027856.1\|AVP93097.1\|1596864_1597476_+\|aromatic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|180312
CP027856.1\|AVP93111.1\|1611118_1613440_+\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
CP027856.1\|AVP93109.1\|1607647_1608193_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
CP027856.1\|AVP93094.1\|1593348_1594227_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95488.1\|1594365_1594701_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235188
CP027856.1\|AVP93107.1\|1606338_1606788_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
CP027856.1\|AVP93096.1\|1595491_1596868_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
CP027856.1\|AVP93101.1\|1599928_1600702_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
CP027856.1\|AVP93100.1\|1599014_1599932_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|224054
CP027856.1\|AVP93102.1\|1600758_1601106_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
CP027856.1\|AVP93108.1\|1606913_1607651_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
CP027856.1\|AVP93095.1\|1594727_1595258_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
CP027856.1\|AVP95489.1\|1603662_1605159_-\|polynucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|236939
CP027856.1\|AVP93106.1\|1605322_1606225_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|274810
CP027856.1\|AVP93104.1\|1602341_1603136_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP027856.1\|AVP93110.1\|1608415_1610863_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP93112.1\|1613481_1613892_+\|VOC-family-protein	gnl\|CDD\|319940	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins. uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.65782e-71
CP027856.1\|AVP93099.1\|1598371_1598902_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	1.02418e-92
CP027856.1\|AVP93105.1\|1603154_1603652_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	4.55953e-67
CP027856.1\|AVP93098.1\|1597555_1598170_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	8.28106e-11
CP027856.1\|AVP93097.1\|1596864_1597476_+\|aromatic-acid-decarboxylase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	4.65218e-125
CP027856.1\|AVP93111.1\|1611118_1613440_+\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP027856.1\|AVP93109.1\|1607647_1608193_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	2.45235e-33
CP027856.1\|AVP95488.1\|1594365_1594701_+\|hypothetical-protein	gnl\|CDD\|235188	PRK03987, PRK03987, translation initiation factor IF-2 subunit alpha; Validated.	0.00606789
CP027856.1\|AVP93107.1\|1606338_1606788_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	2.61102e-75
CP027856.1\|AVP93096.1\|1595491_1596868_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP027856.1\|AVP93101.1\|1599928_1600702_+\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	1.63403e-172
CP027856.1\|AVP93100.1\|1599014_1599932_+\|ABC-transporter	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.37683e-102
CP027856.1\|AVP93102.1\|1600758_1601106_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.74902e-14
CP027856.1\|AVP93108.1\|1606913_1607651_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	7.56826e-134
CP027856.1\|AVP93095.1\|1594727_1595258_-\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	1.00447e-128
CP027856.1\|AVP95489.1\|1603662_1605159_-\|polynucleotide-adenylyltransferase	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	0
CP027856.1\|AVP93106.1\|1605322_1606225_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|274810	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. [Protein synthesis, tRNA and rRNA base modification].	2.27181e-152
CP027856.1\|AVP93104.1\|1602341_1603136_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.38767e-163
CP027856.1\|AVP93110.1\|1608415_1610863_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0

>CP027856.1|AVP93102.1|1600758_1601106_-|antibiotic-biosynthesis-monooxygenase
MSKKVYCIAQFLPKPGKEQALFQVLQGLEPNTLREDGCLQYRVTRHIASPFAEGESFPIVFNEIWQDMASFEAHCQRAEIKAFFERYCLAEDGLAAKWNVCVYSDEPADYDAPAL
>CP027856.1|AVP93101.1|1599928_1600702_+|ABC-transporter-permease
MNPMTYYIAFKSILAKEVSRFTRIWIQTLVPPAITMSLYFVIFGNLIGSRIGDMGGFSYMEFIVPGLIMMSVITNSYSNVASSFYSAKFQRNVEELLVAPVPNYIIIAGYVGGGVARGLCVGLIVTLVSLFFVPLQVHHLFSVCFTVLLTSILFSLGGLINAVFAKSFDDISIIPTFILTPLTYLGGVFYSISLLPPFWQGVSQVNPIIYMVNAFRYGFLGISDVPLGTAYLIIIGFIVALYGLAWWLISRGTGLRH
>CP027856.1|AVP93100.1|1599014_1599932_+|ABC-transporter
MNALEISGLKKTYQGGVEALKGIDLTVKQGDFFALLGPNGAGKSTTIGVISSLVNKSAGKVKVFGYDIDTDLELAKAQLGLVPQEFNFSQFEKVSQIVTHQAGFYGVPSAEAKVRAEKYLRQLDLWDKRDMAARTLSGGMKRRLMIARALMHEPRLLILDEPTAGVDIEIRRSMWSFLKDLNEQGVTIILTTHYLEEAEMLCRNIGIIDKGRLIENTSMKNLLGKLGRETFLLDLVPGSQVPTLPEFNGRMQDEHTLEVELDKSQSLNSLFEQLSAQGVQVLSMRNKANRLEELFVNLVEEGRKA
>CP027856.1|AVP93099.1|1598371_1598902_+|hypoxanthine-phosphoribosyltransferase
MKHNVEVMISEADVAARIAKLGEEITARYQGSDEVVMIGLLRGSCVFLADLCRQCQLPITLDFMTASSYGSGMHSTRDVRILKDLDDDIKGKDVVIVEDIIDTGYTLNKVREILSLREPKSLAICTLLDKPSRREVQVPVDWIGFAIPDEFVVGCGIDYAQKYRNLPFIGKVVPQE
>CP027856.1|AVP93098.1|1597555_1598170_-|TetR/AcrR-family-transcriptional-regulator
MEPRAEIRRRTRLSPEARRDQLMECAIEVFSRRGIGRAGHAEIAEQAKVSVATVFNYFNTREDLVDEVLAEIEGFVQQILEQAYNGQGSVRDSIHRHVKLFVDAAYDKPDHASIWLEWSSSVREEVWPRYTRLLDKALERIAPHLQAAMDSGEIQSVLSAQDLARSLTGFGYVMMQMINQPQRPSREEVTDFLFKYVTAPLQVV
>CP027856.1|AVP93097.1|1596864_1597476_+|aromatic-acid-decarboxylase
MNKQITLALTGASGAPYALRLLQCLVQADYKVYLLASSAARVVLKTEQQQEWPGSPKELSAYLCRQYGAREGQIVACGKEEWFSPVASGSAAPRQMVVCPCSMGTVSAIANGTSDNLLERAADVVIKERGQLILVPRESPFSAIHLENMLKLARLGVTIMPAAPGFYHEPKSIEDLVDFMVARILDHLGVEHALTSRWGYAKP
>CP027856.1|AVP93096.1|1595491_1596868_+|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MHIHILGICGTFMGGLAVLAKQLGYRVTGSDANVYPPMSTQLEQQGIELTEGYDPSQLEPAPDLVVIGNAMSRGNPCVEYVLDRNLPYISGPQWLLEHVLQDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFLIGGVPGNFPVSARLGSAPFFVIEADEYDCAFFDKRSKFVHYHPRTLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPQADDNLGAVRKMGCWSEVELVGQDDAKWKAVKLADDGSAFEVWLDGVKQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKGEVAGISVYDDFAHHPTAIETTLGGLRARVDAVGGQARILAVLEPRSNTMKLGVHKEELAGCFDGADEVFFFQPANIGWDLGEVTAHMSRPAQVFDDLEALINRLVAESRAGDHILIMSNGGFGGIHDKLIARLKQGTS
>CP027856.1|AVP93095.1|1594727_1595258_-|inorganic-diphosphatase
MSLNLVPAGKSLPDDIYVIIEIPQNADPIKYEVDKDSGAIFVDRFMSTPMFYPCNYGYVNATLSLDGDPVDVLVPTPYPLLAGSVIRCRPVGVLKMTDESGEDAKIVAVPHSKLTKQYDHIQDVNDLPELLKAQIQHFFERYKELEAGKWVKVEGWGDKAAAEAEILTSAERYAAK
>CP027856.1|AVP95488.1|1594365_1594701_+|hypothetical-protein
MKPVSMCLLILLSLPALAGQVIVNQGMSTADTFALRDQLAREHEWQEWLRFQQAVKWLEVLPVNCDLVGGAGQEYRCGDNYYRPYRQNGRDLYIQGDPPSQSPQRPIKKAP
>CP027856.1|AVP93094.1|1593348_1594227_-|hypothetical-protein
MKLAQGLMWSLLFGSAAMANEVNLSWQWQSADGQRKHLQLSTDERVLSASRHEMTLLDASLNYPLETLYSYISPRLYNSINQINQNSPETATKFRNLEQAFTLHDNSLESTQFWQAYEQYQEDAFYEMRVLPCVHPANRQLPCVRPNYSQLFYQFKGDLKPLARQFSAKDLATSVNLLQEWLSAIPTPPEQMDHFAPPLQALQDNKADSDEKALLMASLLAELAPQYNLSIIYPGISIGSVSPAWLAITADSGLEGDTLVIDNQRHVLLTGSPLLAQQMTMAQIPLISEPLY
>CP027856.1|AVP93104.1|1602341_1603136_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSKITITDLQKMKQDGQKITAITAYDATFAKLFDDEGAQVLLIGDSLGMVLQGGDDTLAVSMDEMVYHTRCVVRGTSKALVITDMPFMSYATPEQTYQNAARLMAAGARMVKMEGGDWLCESIRHLTRNGVPVCGHLGLTPQSVHVFGGFKVQGRDEFHAQEIYRQALELQAAGIQLLVLECVPVALAERISKALRIPVIGIGAGPATDGQILVMHDAFGITSGYVPKFTKNFLAETGDMRAAIRLYVQQVSEGTFPGPEHCFN
>CP027856.1|AVP93105.1|1603154_1603652_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MIEVFVAIGSNLGNPVAQARQAVAALGRLPESELQQASQLYGSRPMGPADQPDYVNAVVRLHTRLGPLALLDQLQKIEREQGRVRKDERWGPRTLDLDLLLYGEQVIQHERLIVPHYGMKEREFVLLPLAEIAPALVLPCGTPLTELVARCPRNGLEILAAATGE
>CP027856.1|AVP95489.1|1603662_1605159_-|polynucleotide-adenylyltransferase
MASRQFEVMKRCTIFSQIANFCRKVLGKEDGEQSMESPIPARVAGQRRTLSRDQHPISRKEISENALKVLYRLNKGGYEAYLVGGGVRDILLGRTPKDFDIATDATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGIEDLAERKLELIGDPETRYREDPVRMLRAVRFAAKLEMTISPRTAAPIRELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLFQPLFPQVAALFTPNGNSPYEQFIELALMDTDTRVREDKRVTPAFLYATLLWGAVEARARVLENESGLPWHDAFMLAINEVLDAQVRIIAVPRRFTTDVRDIWALQQRLTRRQGRHPERAMEHPKFRAAFDFLLLRNRVERGLGELASWWERYVASNPDVRPQLQREATRRPASGERAPAAEPRGDGEKRSSNSRNRRRPRRRKPKAAE
>CP027856.1|AVP93106.1|1605322_1606225_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MAMTPSSPVRPHVGRFAPSPSGPLHFGSLVAALGSFLQARSHQGRWLVRIEDIDPPREMAGASGLILQTLEAHGLGWDGEVMFQSARHGRYDEIIDQLYRAGDLYWCRCTRREIMAAGGFYNGHCRTLGLTAEGCAARLRQHNPVYHFEDELQGHIAVPAALAEEDFIVRRRDGLYAYNLAVVVDDMDSGITEIVRGADLLEPTVRQIALYQTLGADVPAWVHLPLAVLADGNKLSKQNHAPALAQDDVRPALWQALAFLGQCPPPCLRENTVDEIIAWGIAHWQLARVPRQQKIVLGAR
>CP027856.1|AVP93107.1|1606338_1606788_-|RNA-polymerase-binding-protein-DksA
MPTGENRKSLGPLAIAGVEPYQVKAGEEYMNDQQKVHFRKILGAWRNQLMQEVDRTVDHMKDEAANFPDPVDRAAQEEEFALELRTRDRERKLIKKIEKTLLLLEEDDFGYCEHCGIEIGIRRLEARPTADLCVDCKTLAEIKEKQMAG
>CP027856.1|AVP93108.1|1606913_1607651_-|DNA/RNA-nuclease-SfsA
MIFDPPLQSGLLIARYKRFLTDVQLADGETITIHCANTGAMTGCADPGTRVWYSTSNNPKRKLAHSWEIAQSPAGHFICVNTARANQIARELIEQGALAPLAGYARLRTEVKYGEENSRIDLLLEDDHRPSCYIEVKSVTLLDEREQVGMGYFPDAVTARGAKHLRELMAMKAAGHRAVLLFMVLHSGIARMRPAAHIDPHYSQLVEQAMAAGVEILCYRPHVGVQGMVAQDFIPFESDHLLPEG
>CP027856.1|AVP93109.1|1607647_1608193_-|RNA-2',3'-cyclic-phosphodiesterase
MPRLFFALPLHQLAPALIDWRERRPWPGLPVPERNLHLTLAFLGEADEATRDRLIAAAAQQRCPPFSVHLDQTGWFQRARAAWVGPSEWPNELNVLARALRRHGEKLGLGNGEQGYRPHVTLSRKAGEAPEALPAPDLVLQADSFCLYQSVSTPLGVSYEPIACWPLRARIKETNSEELNP
>CP027856.1|AVP93110.1|1608415_1610863_+|ATP-dependent-helicase-HrpB
MSQLPIVSVLPELFDAIDSHASVILQAPPGAGKSTLLPLELVRLNRLPGRIIMLEPRRLAARNIAGFLARQLGEKVGERIGLRVRGESRTSAATRLEIVTEGVLTRMLQQDPELTGVSLVIFDEFHERSLHADTALAFAIESQQGLREDLKLLIMSATLEGMALEALLPDAPVIRSEGRGFPIDYHYRPANRQQWLEPQVGAVVLEALAAHGGSALVFLPGQGEIERLAQWLEGRLPDDVRLAPLYGRLDMAAQQAAIEPAPAGSRKLVLTTNVAETSLTIEGVSVVIDSGLERRATFDLRSGVTRLETRQIARASATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGLLLDAAQWGARVESLPLLDMPPAAAVASARRLLVALGAMKAEGEQQLTPAGRTMAAFGTHPRLARMLLRARELEAEGLTGIVADGAFLVALLEEDLRGSERLSVLFHRRLGALRQGAARWFERLGARPAAAQGQWLGLLCALAWPDRIGKLRSGSRYQLSGGIGCDLVEGHPCQGQGALIAIEMGQNDRGSRIFIAEPVALDELVRQLPELVSERQWFDWDEREERVRAERQQVIGELVLGQRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDEGSEGLLARLRCARDWLPDEGWPAMDDESLLARLEEWLLPALSGMTRLEQLKRLNLSDLLRQSLPWPLPKRLDEALPSHFSAPTGSRVRIRYQPGQAPVIPVRIQEMFGQGTTPCVADGRVPLVVELLSPAQRPLQITADLAAFWAGSYEQVKKEMKGRYPRHYWPDNPLEAMPTKVTKKKMGI
>CP027856.1|AVP93111.1|1611118_1613440_+|penicillin-binding-protein-1B
MATQRRKSPPKKAAPKRTIWRKLFWLGFKLSLVVAAFMVVFGIYLDTKVRERFDGEKWQLPVMVYSRPLELYPSQRLSQTQMLRELNMLSYKQVRQPHTPGEYAVNGNRIELVRRPFEFHDGADGARGLRLTFNGARLEGIQSLENQRQLGYAQMDPVLLDRLNTEDREDRLLVRIAEVPDSLLVTLLTTEDRDFYQHGGVSPVAIMRAMVANVLAGRTVQGGSTLTQQLAKNFFLTRERSLWRKAQEAYMAVLIDYRYSKDEILEAYLNEVYLGQNFSQGVYGFGLASYFYFGIPVNELDIDQVALLVGMVKGPSYYDPWRFPERAKARRDLVLKLLMEHGSLTQAEYELASKQPLGIITRGQMSYGRTPAFMGLLKREIQNRFGPDLLKQSGLKIFTSLDPIAQHAAEQAVETGLATIEKQRGKKKLEAAMVVSDWHKGEVVAMVGGRDPRYAGFNRALDARRQIGSLVKPAVYLTGLSNGLTLGTPLKDQPIRIRGQDGQIWTPQNYDRKFRQSVPLMEALASSLNVPTVNLGLQVGLDKVVDTLHKLGVQQEIQPYPSLVLGAVALSPMEVNQMYLPIANQGLTQPLSAIRAVVNSDGSQLYQHDETAKRVTDPQASWLTLFAMTKTVSQGTARALGAKFPGATMAAKTGTTNELRDSWFAGMDNNELVSVWVGRDDNQPAGLTGASGALQLFSGYMSQRGVNSLGLKMPEGVSWASFSRASGARVASDCPGSLQVPAKLAGLGEPMSCASPVSSPVNALDQWFGGFFN
>CP027856.1|AVP93112.1|1613481_1613892_+|VOC-family-protein
MTLPLLGGIHHVAIIASDYERSRHFYHQVLGLPIINETLREARHSWKLDLALPDGSQLELFSFPAPPPRPSRPEACGLRHLAFRVQALDPVIAHLERHGVAVEPVRVDELTGSRFTFFADPDGLPLELYEVDAGPA

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Crispr_ID: CP027856_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_12

1725783-1725903

Orphan

Consensus_repeat	Method
GGGAGGGCGATGCGCCCGCCATCACACCACCATGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_12

>merge|CP027856|12|1725783-1725903|CRISPRCasFinder
GGGAGGGCGATGCGCCCGCCATCACACCACCATGGGCTGCCCCGTCTCTGGGTGGTGGATGTCTTGGACGGGGTAGTCGTGGAAAGGGAGGGCGATACGCCCGCCATCACACCACCATGGG

>CP027856|12|12|1725783-1725903|CRISPRCasFinder
GGGAGGGCGATGCGCCCGCCATCACACCACCATGGG	CTGCCCCGTCTCTGGGTGGTGGATGTCTTGGACGGGGTAGTCGTGGAAA
GGGAGGGCGATACGCCCGCCATCACACCACCATGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP93205.1\|1729255_1729813_+\|heme-utilization-protein-HutZ	unknown	unknown	gnl\|CDD\|200361
CP027856.1\|AVP93204.1\|1728746_1729259_+\|heme-utilization-cystosolic-carrier-protein-HutX	unknown	unknown	gnl\|CDD\|274986
CP027856.1\|AVP93201.1\|1725038_1725647_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224203
CP027856.1\|AVP93197.1\|1720167_1720533_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226461
CP027856.1\|AVP95496.1\|1718187_1718940_-\|lytic-transglycosylase	unknown	unknown	gnl\|CDD\|381594
CP027856.1\|AVP95497.1\|1726710_1727739_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP027856.1\|AVP93195.1\|1716208_1717876_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
CP027856.1\|AVP93199.1\|1722368_1723367_-\|protein-CapI	unknown	unknown	gnl\|CDD\|187563
CP027856.1\|AVP93211.1\|1735664_1739138_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223664
CP027856.1\|AVP93208.1\|1730907_1731882_-\|iron-regulated-protein	unknown	unknown	gnl\|CDD\|350609
CP027856.1\|AVP93206.1\|1729883_1730288_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93193.1\|1714028_1715372_-\|adenine-permease-PurP	unknown	unknown	gnl\|CDD\|225161
CP027856.1\|AVP93198.1\|1720607_1722308_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|224720
CP027856.1\|AVP93200.1\|1723363_1724725_-\|UDP-glucose-6-dehydrogenase	unknown	unknown	gnl\|CDD\|223936
CP027856.1\|AVP93209.1\|1732083_1734177_+\|ligand-gated-channel-protein	unknown	unknown	gnl\|CDD\|273808
CP027856.1\|AVP93203.1\|1727738_1728578_-\|hemin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238569
CP027856.1\|AVP93194.1\|1715634_1715970_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93210.1\|1734439_1735582_+\|3-phenylpropionate-MFS-transporter	unknown	unknown	gnl\|CDD\|236856
CP027856.1\|AVP93207.1\|1730327_1730882_-\|isochorismatase	unknown	unknown	gnl\|CDD\|238496
CP027856.1\|AVP93196.1\|1719389_1720130_+\|dolichol-phosphate-mannosyltransferase	unknown	unknown	gnl\|CDD\|133030

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP93205.1\|1729255_1729813_+\|heme-utilization-protein-HutZ	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	3.30139e-108
CP027856.1\|AVP93204.1\|1728746_1729259_+\|heme-utilization-cystosolic-carrier-protein-HutX	gnl\|CDD\|274986	TIGR04108, Heme_utilization_protein_HuvX, putative heme utilization carrier protein HutX. Members of this protein family are HutX, found paired with HutW in some heme utilization loci although not shown directly to be necessary for heme utilization. This protein is homologous to the heme carrier protein HemS, while its partner HutW is homologous to (but does not complement) HemN, the radical SAM enzyme oxygen-independent coproporphyrinogen III oxidase involved in heme biosynthesis.	3.24659e-87
CP027856.1\|AVP93201.1\|1725038_1725647_+\|hypothetical-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	2.75756e-39
CP027856.1\|AVP93197.1\|1720167_1720533_+\|hypothetical-protein	gnl\|CDD\|226461	COG3952, COG3952, Predicted membrane protein [Function unknown].	2.35285e-35
CP027856.1\|AVP95496.1\|1718187_1718940_-\|lytic-transglycosylase	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	3.6354e-31
CP027856.1\|AVP95497.1\|1726710_1727739_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.20666e-78
CP027856.1\|AVP93195.1\|1716208_1717876_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
CP027856.1\|AVP93199.1\|1722368_1723367_-\|protein-CapI	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
CP027856.1\|AVP93211.1\|1735664_1739138_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223664	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only].	2.29724e-64
CP027856.1\|AVP93208.1\|1730907_1731882_-\|iron-regulated-protein	gnl\|CDD\|350609	cd14727, ChanN-like, ChaN is an iron-regulated, heme-binding protein. This family represents a domain found in ChaN, a heme-binding/iron-regulated lipoprotein from Campylobacter jejuni. ChaN, possibly involved in the uptake of heme-iron, contains a pair of cofacial heme groups situated between two ChaN monomers. A single tyrosine residue contacts the heme-bound iron atom while the heme-binding regions of each monomer also have contacts to the heme in the complementary monomer. ChaN presumably associates with an outer membrane-associated receptor, ChaR. Campylobacter jejuni is an important cause of food-borne illness, and is dependent on iron uptake from the host. ChaN like proteins are related to the Tiki/TraB like family of proteases. Proteins containing this domain also include protein reticulata-related from Arabidopsis which may play a role in leaf development.	4.02954e-71
CP027856.1\|AVP93193.1\|1714028_1715372_-\|adenine-permease-PurP	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	5.05675e-172
CP027856.1\|AVP93198.1\|1720607_1722308_+\|glycosyl-transferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	6.03655e-50
CP027856.1\|AVP93200.1\|1723363_1724725_-\|UDP-glucose-6-dehydrogenase	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
CP027856.1\|AVP93209.1\|1732083_1734177_+\|ligand-gated-channel-protein	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.88952e-129
CP027856.1\|AVP93203.1\|1727738_1728578_-\|hemin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238569	cd01149, HutB, Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.48582e-71
CP027856.1\|AVP93210.1\|1734439_1735582_+\|3-phenylpropionate-MFS-transporter	gnl\|CDD\|236856	PRK11128, PRK11128, 3-phenylpropionate MFS transporter.	2.11213e-124
CP027856.1\|AVP93207.1\|1730327_1730882_-\|isochorismatase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	1.43632e-51
CP027856.1\|AVP93196.1\|1719389_1720130_+\|dolichol-phosphate-mannosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.67131e-49

>CP027856.1|AVP93201.1|1725038_1725647_+|hypothetical-protein
MDNTPRSAHPLYEDVLALLTAAGFVSLGIFLFHQVGLLTGGTAGLALLLQQVTGLSFGLLFFAMNLPFYALAWLRMGPRFTLNTFAAVATVSFMTDHLNAVLQIGKIEPVYAALIGGTLIGMGLLIMFRHKASLGGFNILALFIQDKFGIRAGKLQMGLDCAIVIASFFVVSPWLLALSVVAAIICNLVLTLNHKPGRYQIA
>CP027856.1|AVP93200.1|1723363_1724725_-|UDP-glucose-6-dehydrogenase
MRVSVFGIGYVGLVQAAVLAEMGHRVTCVDVDAAKVERLEEGMIPIFEPGLAPLVQANHQAGRLQFTTDVAQGVAFAELIFIAVGTPPDEDGSADLQHVLAVAGTIGRLMQDGKVVVNKSTVPVGTAHRVHQHIAAILRDRGLDLPLEVVSNPEFLKEGAAVADCLRPDRIIIGTDSAHALSLLEELYAPFNRNRDRIIQMDTRSAELTKYAANAMLATKISFMNEMATLAEKLGADIEAVRKGIGADPRIGHHFIYPGCGYGGSCFPKDVKALIHTAGEIGCDAPLLHAVERVNDGQKHKLMARLRQHFGGDLTGRTFALWGLAFKPNTDDMREAPSRVLMEAIWAAGGKVQAFDPEAMSEAQRLYGLRDDLTLCGTQEAALKGADALLICTEWQQFRAPDFELVRQTLKQAVIIDGRNLYDPARLRQRGFTYYAIGRGDSLATGLREEQRQ
>CP027856.1|AVP93199.1|1722368_1723367_-|protein-CapI
MKYLVTGAAGFIGFHVARRLCRDGHQVVGLDNLNDYYEVSLKEARLALLLPLPGFRFERMDLADRATMAALFARERFDRVIHLGAQAGVRYSLDNPFAYADSNLNGTLTVLEGCRHHGVQHLVYASSSSVYGLNEQMPFKTSDGVDHPVSLYAASKKANELMAHSYSHLYGLPTTGLRFFTVYGPWGRPDMALFKFVRAILSDEPIDIYNQGQLSRDFTHIDDIVEGVIRVADRPPQGDPSWQGAADASPAPYRLFNIGHGSPVRLMDFVEAIEAALGKRAIRNLLPMQAGDVLATWADTQALFDTTGYRAGVGLEEGVASFVDWYRAYYGV
>CP027856.1|AVP93198.1|1720607_1722308_+|glycosyl-transferase
MRSAMVNDRFLLNQRSLGWLLLIALMVLGAGLGLRDPWPADEPRFALIAKEMVESGQWLFPMRGGEIYPDKPPLFMWGIALGYLLTGSIKVAFLLPSLLAGLLTIVLVWDLGRRLWNPATGFMAGLLLLLTVQFTLQAKTAQIDALVTCFITLGVYGFVRFLLCEGGWRWYWLGWFTAGLGIITKGVGLLALLILIPAIWTHREQIRAASRADWLKALVGPLFMLLAIGLWLVPMLSAVAQSGDPVLQAYRDNILLRQTVTRYANAWHHVKPFWYYLSSVIPPFWLPLSLLLPWLVLAWRKAIQGQDKRVILLLGYLVLVVLFFSLSPGKRGVYVTPGTPALALLTAPYMGALLARVWPGRLLGGLGWLLGILCVGGAGALAVSDKLANRLGDLGPAPWLPLLVLGAALLLVNVLLRRAPLSAILCSLAVGWLLYSCWICVRLNDMRTPQGVMALAAQKVPAGEELLLAGFKEQHLLFARQPVQHYPYLLGDGEQAREAAAWVAAAPNRHVLGSADLMVLCFEPEKMENLGNRHRTDWLLAGAEALKPACQGLTPRLEPFRYTPGP
>CP027856.1|AVP93197.1|1720167_1720533_+|hypothetical-protein
MIDALLSMELTWFDWTGLHVTGWKLIGYTGALMFGGRWLVQFLASKRAGKPVIPRMFWYMSVLGSLMTLSYFVFSPKQDSVGVLQNLFPTFTALYSLYLDIQHRGWKRDKLVDDNEIHHGK
>CP027856.1|AVP93196.1|1719389_1720130_+|dolichol-phosphate-mannosyltransferase
MLDSIDVSVVVPAKDERDNLAPLIGEIDAALAGKYSYELIYVDDGSEDDSYAILCDLKRRYAGLRVIRHARAVGQSMAVLSGVRHGRGDWLVVLDGDGQNDPADIPAMLEEAKRRFAQDPTQVGLIGHRVNRRDDWVKRLSSRLANGFRDLLLRDGIPDTGCGLKVVRRDWYLRLPGFNHMHRYIPALIQAQGGRMSPWPVNHRPRQAGVSKYGVWNRLWVGLVDVVGVCWLQRRSKVVEVRETLE
>CP027856.1|AVP95496.1|1718187_1718940_-|lytic-transglycosylase
MSALRQGAAMEQSNPRRAIAHYCTAASLGNPEAYYRIGRLLARGPQGIRSPRHANAYLAMAMRLGNQQAARYYNERVGNAPLGTCGIGGGGGGAPWIRPSTPFDQDSYLARQSLTKQKLAVMIRQAAHRHKVNPQLALAIAIAESNLNSTAVSPKQAQGVMQLIPETQVRFGVTRPFDAQQNIRGAMIYLKWLEKQFGPDWVRISAAYNAGEQAVIRHGGVPPYQETQEYVQRVLYYSGQDPAKSTRQPR
>CP027856.1|AVP93195.1|1716208_1717876_-|energy-dependent-translational-throttle-protein-EttA
MAQFIYTMNRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPGIKIGYLPQEPKLDPEQTVREAVEEAVGEVKRAMARLDEVYAAYADPDADFDKLAREQGELEAIIAAQGGHNMENQLERAADALRLPAWDAQIKHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDARLAQEASSEAARRKSIEKELEWVRQNPKGRQAKSKARMARFEELNTNDYQKRNETNELFIPPGPRLGDKVVEVANLCKSYGDRQLIDDLSFAIPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGDTVVLASVDQFRDSMNDKKTVFEEVADGQDILRIGNYEFPSRAYIGRFNFKGADQQKRVGELSGGERGRLHLAKLLQTGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKIAFFEGNFTEYEEWKKKTYGADAVQPHRAKYKRITK
>CP027856.1|AVP93194.1|1715634_1715970_-|hypothetical-protein
MTQTSAPPKRLTIQIRIEPGCLGPDGKRHIDTFCAAAGRIFAAIEPERVSWVLLPRHDKQLPEQEFFIEGRKLSEEQASLLLQRMGLTLATLQEHSDAVLAQLVERYLKSL
>CP027856.1|AVP93193.1|1714028_1715372_-|adenine-permease-PurP
MNQQHQAASQAAGQGLLERLFALKGHGTTARTEVIAGITTFLTMVYIVFVNPQILSAAGMDTQAVFVTTCLIAGIGSILMGLLANLPIALAPAMGLNAFFAFVVVAGMGYSWQIGMGTIFWGALGLLILTLLRVRYWLIANIPLTLRVGITAGIGLLIALLGLHNAGIVVASPATMVTVGDLTSLPCLLGLLGFFLICIFSARGVHSAVLIAIVVTTTLGWLFGDVTFKGFVSVPPSITPVFGQLDLIGSLDISLAGIIFSFMLVNLFDSSGTLIGVTNRAKLADDKGHFPRMKQALLVDSVSSVGGAFMGTSSVTAYIESSSGVAVGGRTGLTAIVVGVLFLLAIFFSPVAAMVPAYAAAGALIYVGVLMCSELTRVKWEDLTEAVPAFMTAVMMPFSFSITEGIAVGFISYCVMKAGTGRWREINPCVLVVALLFVLKFVWVDSH
>CP027856.1|AVP95497.1|1726710_1727739_-|iron-ABC-transporter-permease
MRLPLPWLLALTGCTLALLLVGSLATGPMSLSLAESLQALFAGKESGIEAHKLLIVQEIRLPRTLLCIAVGGILGLCGAVMQGLFRNPLADPGIIGVSGGAALGAALAIVLLAPLGQQLQSLLGLGLLPLLAFLGGALTTTLVYLLGTREGGTSVTVMLLAGVAITALSGAVIGLLTYLADDQMLRNLSLWQMGSLAAGKPVDVGLALATLVALLWLFMRDANPLNALLLGEGEARHLGVNVQSLKRRLILLTAAGVGVAVAVAGMIGFVGLVVPHLVRLLAGPNHVRLLPLSALLGAALLLGADMLARTLLAPAELPVGIITALLGAPFFIWLLVKSRRTL
>CP027856.1|AVP93203.1|1727738_1728578_-|hemin-ABC-transporter-substrate-binding-protein
MGRRFALALSLLGCSALSLPAAAQERIVSIGPATTELIMALGGEQSLIATDVSSPEPKGLPRVGYHRALAAEGILSLAPTRLVGSDEMGPPPALEQLRRSGVEVTVLPTAPTLANLNERIDALAGLLGNEAAGTRLKAEIAVQSDQLAAQAKQNKPLKVAFLLLHKGQPTSIAGGNTTASALVTLAGGINPVARLHDYKPVSTESLIELQPDLVLVSGRDWQQYQSVDSVLAQVPALAATPAGKNRAIHAIDGHALQGGLSLRSLQQANQIAQWIKQGS
>CP027856.1|AVP93204.1|1728746_1729259_+|heme-utilization-cystosolic-carrier-protein-HutX
MSIAQRIHALLEQDPSAHPSSIATELAVSEWEVVRHLPAELMTLVPSDQAEALLADLASWGQVTTIVESDGSIFEVKAPFPKGKTARGYYNLMGRDGEMHGHLKLDNVVGIALVSKLFMGKEGHSFQFFGHSGRCIFKIYLGRDEQRQLLPDQVERFKALRHQYQEEVKA
>CP027856.1|AVP93205.1|1729255_1729813_+|heme-utilization-protein-HutZ
MSERQERLQNRLQPEIREFRDGCRTLQLATVDGEGNPNASYAPFVLQEDGYYVLISEIARHARNLQQVPKVSLMLIEDETGARELFARKRLTFDAVAEVVARDDERWGKAIAALEGRFGDIVKGLSNLKDFVLFRLKPEQGLFVKGFGQAFRVSGDELVDFVHLVEGHKRVDNGAELTSETDAPV
>CP027856.1|AVP93206.1|1729883_1730288_-|hypothetical-protein
MRLFSAVALVLLLPAITACSGMPGTTPDGPAPLFHTNINEEGSKRFTFEAAPLDVLPSRLQEDDSRLSRNSKSLLERREALQDEQLTETLAARNYCRTGYIVLSQTSWKIRGECNETATQADRDAFPNKASWQE
>CP027856.1|AVP93207.1|1730327_1730882_-|isochorismatase
MDVLLIIDVQQGVMKATHHQQPQVLANINRAAAHVRQHHGRVIYIQHDDLPGDELEPGTPGWQLHPALQPAKGDSRVRKTACDSFLETELAFLLAEQSVDRLILCGSNTDFCVDTTVRSAAAHGFEVLVLKDGHTTADRPHLSAEKIIEHHNWMWQHLSLPEGRSITLLTTDQLLEAAQPALAC
>CP027856.1|AVP93208.1|1730907_1731882_-|iron-regulated-protein
MTRRLPLLALPLLLAACATPPQSQPPQTLYHYQLGEGTDDRPLSLAQAVDKVRDADIVLVGELHSHPAVHLLQANLLAELAGMSRADGRGLVLSMEQFTRADQPVLDAYLAGRIGESTLIREGHAWPNYPSDYRPLVEFAKAQQLTVIAANAPKPLVSCVGQEGPEWLDKLPASRRNQLARELTLGEDPYRQKFMASMHHGDADGNARRFAAQTSWDDTMAESMVDYLKQHPGRRIMHIAGNFHVEGGLGIASRIASRNPALKVALVVPETGSQDGKAAPGRSADVRVHIAPLPERWLNAEEMKQDMGALHQSRSRDCSQWLQP
>CP027856.1|AVP93209.1|1732083_1734177_+|ligand-gated-channel-protein
MAHNNTPSLIALAVAAGLVSPAFAADKKTDEVMVVSGSRMEQKLEDVSGPIAVITSEQIEEQVVSNVADLFRYEPGVSVQGGAGDAQTFTIRGMSENRVKVVQDGVRQNDAYKNGGVGQTYFDTDMIKQVEVAKGPASAAYGSDALGGVIAITTKDAGDFLKGKDSYLDATTGYASSSHQKMAGITGALRTGEFENLLRYTWRDGGVTQNYDSDKDEFDIVSQAVLLKSKWNLSDDQFLKLTVDYFTEGQDPDAIDLTKAGSVFNQPITDKETDNLSLVLDHGLALNAPWADRVDSKIYYTRTKQTLDQYASSKYPVNPGNPYVTKNSLDHNGFEQESLGAQVKFSKALANQRLAWGVEYEHTDNERTRFKGPTTPGDFVGYSELSFPSTTSERSALWAFDEIKFGERWVLTPGARYDYYKMTPDQDPAYTGENMQKISEGEFSPKLGLVFKAHEAANLFAQYSHGFKAPMYDNAFSTLNHQAYGYRIEPNPNLKPESSDGIDLGVRGSSGGFSYEVATFYNQFDDFIELTAVGTEGRTAIYQYQNLDKATTKGAEVKADYWLNELVNVWGNLAYIEGKDGDGNYINSLSPFNGSLGVRLEQPNWNINTALRFADDMDKVGKDARGNDNIKSAGWGVVDIYAQFKPMQDLQLNVGVFNLFDKEYVSYESITGLAATTDTSNQTEPGRNLSARVKYVF
>CP027856.1|AVP93210.1|1734439_1735582_+|3-phenylpropionate-MFS-transporter
MPAFSWLALFFGAFYFVYGAYLPFWSLWLEGKGVSAEQIGLLLGVGMAIRFAGNLMVMGRVKGAGQLLPVTRLLCLLSLLAFLGFYLSHSLWWLVLLTLVANFIYPTLMPMGEALATRMVVQTHLDYGKVRLCGSFAFIVASTLVGALVSNFGSDWVLHTMVAGLLAMLALSVLPLRPAPQELKGERARASLLVTLKSAPVRRFLLITALLQGSHAAYYGFSAMYWKGAGYSGTLIGYLWALGVVAEIAVFAADKRFFHRFGAQTLFLVGAVGCVVRWVLLGASTELAVLVLGQLLHGVTFCISHLGAVRFMTRQLPAEQQIPTQALYAALGLGMTVAALMAICGVLFEPLGGGIFFIMVLVVLPVFVLRLRGEHEGAAA
>CP027856.1|AVP93211.1|1735664_1739138_+|hybrid-sensor-histidine-kinase/response-regulator
MHQGWLLIGLSLAYLGLLFLIAYVADKSKRRRLKGQPLLYSLSLAVYCTSWTFFGTVGQASESPWSPVPIYLGPMLVFLFGWRLLARLILVAKREHITSIADFIAARYGKSQRLAMVISLIAVMGILPYLVLQLKAIVTGLDLLMANSVPAGPTGNTAELALGVALLLALFSILFGTRNLDATEHHRGMVVAIAFESVVKLLAFMAVGGFALWLIIARPSEARTLVAADFLDAVVAVSPGSLLELAIYTLVAMCAVICLPRQFHVTVVENNQGQDLHWARWLFPLYLFLMGLFIWPLALAGKQWVGADMASDTYVISLPMSLGFDGMAMLAFLGGTSAATGMVIVCTIALAIMVSNDLVLPVLLRRFWQQGRDERLMRLLLQVRRGAILLILLAAWVLYLWLGDLTSLSRIGYLSFGAVAQFAPALLLGLYWRHGNRKGVYLGLALGVSLWFLTLLAESGLLAGSPLEALLAPPDWPAFRELSLGAWCIFLSLLLNLLGYVAGSLLSRAAVSERLQAANFVGKPSRDTTALYQARVSVKELEMLAARFVGSSRVKRAFGRFAGEHGGTLAPQMQASADLIAHTERLLAGVFGTSSARLVLASALQGRNMQLEEIATIVDEASDVFRFNRGLLQGAIEHMGQGISVVDRELKLVAWNRRYIELFHYPHGLIQVGRSIEEIIRYNAEQGLCGPGDIEAQVARRVAFMKRGSPHVSARERPDGRVIEMQGNPMPAGGFVMTFTDITPFRAAERVLREANEHLEARVAERTHELSELNRQLLLVNQQVERANHSKSRFLAAVSHDLTQPLNAAKLFTSSLLEMLPQGGEQAAEQVRIARHIDDALGATEDLITDLLDISRLEAGKFKARKLDFALSDVLGNLKAEFGVLAQAGEIQFSVVESRLAVYSDVRLLRRVLQNFLTNAFRYNPGGRVLLGCRRLGDKVRIEVWDNGPGIPLDKQEAIFDEFSRLDHSRTAREQGLGLGLAIARGISQVLGHQLSLRSWPGAGSVFAITLNLATRPVMPSPVAVPAVRDSQLEGVRILCIDNEEEILIAMASLLGRWGCEVRCAQSLEQAEEIIGAGFLPRLVLSDYHLDDGKTGLQALHMIRLAHGNGISGIIISADRKSELQTQIREHGFGYVSKPVKPLKLRALMNSLLLPIE

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Crispr_ID: CP027856_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_13

1833040-1833139

Orphan

Consensus_repeat	Method
CCCCATCCCGATACGCTCAAGCTGCGTTACGGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_13

>merge|CP027856|13|1833040-1833139|CRISPRCasFinder
CCCCATCCCGATACGCTCAAGCTGCGTTACGGGCTTTGAGAATGGCCAGATCAGGTCTACCCAGACCCCATCCCGATACGCTCAAGCTGCGTTACGGGCT

>CP027856|13|13|1833040-1833139|CRISPRCasFinder
CCCCATCCCGATACGCTCAAGCTGCGTTACGGGCT	TTGAGAATGGCCAGATCAGGTCTACCCAGA
CCCCATCCCGATACGCTCAAGCTGCGTTACGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP93290.1\|1835533_1835962_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378915
CP027856.1\|AVP93285.1\|1830594_1831149_+\|DUF3157-domain-containing-protein	unknown	unknown	gnl\|CDD\|371487
CP027856.1\|AVP93279.1\|1825739_1825943_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95501.1\|1823364_1824189_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
CP027856.1\|AVP93282.1\|1827423_1828596_-\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|182594
CP027856.1\|AVP93281.1\|1826662_1827088_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225563
CP027856.1\|AVP93289.1\|1834095_1835532_+\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|236734
CP027856.1\|AVP93284.1\|1829669_1830500_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224522
CP027856.1\|AVP93291.1\|1835958_1836693_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|180399
CP027856.1\|AVP95503.1\|1840661_1841153_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374318
CP027856.1\|AVP93286.1\|1831330_1831960_+\|autotransporter	unknown	unknown	unknown
CP027856.1\|AVP95502.1\|1837966_1838701_+\|DUF1365-domain-containing-protein	unknown	unknown	gnl\|CDD\|377778
CP027856.1\|AVP93295.1\|1840435_1840654_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370527
CP027856.1\|AVP93288.1\|1833211_1834099_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133379
CP027856.1\|AVP93292.1\|1836689_1837949_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225459
CP027856.1\|AVP93293.1\|1838700_1839957_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
CP027856.1\|AVP93283.1\|1828921_1829518_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
CP027856.1\|AVP93278.1\|1824588_1825743_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379855
CP027856.1\|AVP93294.1\|1839959_1840439_+\|DUF2878-domain-containing-protein	unknown	unknown	gnl\|CDD\|378555
CP027856.1\|AVP93280.1\|1826028_1826649_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379995

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95502.1\|1837966_1838701_+\|DUF1365-domain-containing-protein	gnl\|CDD\|377778	pfam07103, DUF1365, Protein of unknown function (DUF1365). This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.	2.02369e-101
CP027856.1\|AVP93285.1\|1830594_1831149_+\|DUF3157-domain-containing-protein	gnl\|CDD\|371487	pfam11355, DUF3157, Protein of unknown function (DUF3157). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.02616e-34
CP027856.1\|AVP93288.1\|1833211_1834099_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133379	cd01104, HTH_MlrA-CarA, Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.	1.77637e-26
CP027856.1\|AVP95501.1\|1823364_1824189_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	3.66266e-137
CP027856.1\|AVP93281.1\|1826662_1827088_+\|hypothetical-protein	gnl\|CDD\|225563	COG3018, COG3018, Uncharacterized protein conserved in bacteria [Function unknown].	1.28864e-13
CP027856.1\|AVP93282.1\|1827423_1828596_-\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|182594	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional.	0
CP027856.1\|AVP93289.1\|1834095_1835532_+\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|236734	PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional.	0
CP027856.1\|AVP93290.1\|1835533_1835962_+\|transcriptional-regulator	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.74996e-13
CP027856.1\|AVP93291.1\|1835958_1836693_+\|short-chain-dehydrogenase	gnl\|CDD\|180399	PRK06101, PRK06101, SDR family oxidoreductase.	1.7183e-82
CP027856.1\|AVP95503.1\|1840661_1841153_+\|hypothetical-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	0.000218185
CP027856.1\|AVP93278.1\|1824588_1825743_-\|hypothetical-protein	gnl\|CDD\|379855	pfam16539, FlgT_M, Flagellar assembly protein T, middle domain. FlgT_M is the middle region of a family of flagellar proteins that make up part of the basal body of the flagellum. The flagellum is a large macromolecular assembly composed of three major parts: the basal body, the hook, and the filament. The basal body has two unique ring structures, the T ring and the H ring. FlgT is required to form and stabilize both ring structures. FlgT-N and FlgT-M are thought to be involved in the H-ring and the T-ring formation, respectively. and FlgT-M is also required for the stable association of FlgT with the basal body.	3.96547e-40
CP027856.1\|AVP93295.1\|1840435_1840654_+\|hypothetical-protein	gnl\|CDD\|370527	pfam09493, DUF2389, Tryptophan-rich protein (DUF2389). Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.	1.45882e-11
CP027856.1\|AVP93292.1\|1836689_1837949_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	2.3604e-163
CP027856.1\|AVP93293.1\|1838700_1839957_+\|SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	3.15563e-107
CP027856.1\|AVP93283.1\|1828921_1829518_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19764e-46
CP027856.1\|AVP93284.1\|1829669_1830500_+\|hypothetical-protein	gnl\|CDD\|224522	COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only].	1.49147e-16
CP027856.1\|AVP93294.1\|1839959_1840439_+\|DUF2878-domain-containing-protein	gnl\|CDD\|378555	pfam11086, DUF2878, Protein of unknown function (DUF2878). This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.	1.36614e-19
CP027856.1\|AVP93280.1\|1826028_1826649_+\|hypothetical-protein	gnl\|CDD\|379995	pfam17680, FlgO, FlgO protein. This entry represents the FlgO protein. Mutation of this protein in Vibrio cholerae has been shown to reduce motility. FlgO is an outer membrane protein that localizes throughout the membrane and not at the flagellar pole. Although FlgO and FlgP do not specifically localize to the flagellum, they are required for flagellar stability. Proteins in this family mostly contain an N-terminal lipoprotein attachment motif.	1.03518e-46

>CP027856.1|AVP93286.1|1831330_1831960_+|autotransporter
MQKLALSVLVLAGLSSTSVLAQDAFSYAKGAATWAHTKSDYVGGKDSNNRDFGGLSLDLSKSFGSNFYGRFGSEYSSRNSGNDSMAISNLGMGVFTPLSTGLNLYGEAGLMGYSMERELASNVNDSGWDNITRKSSGSLYGEVGLRYDIGAVELSTGYRYANMTDDMHDFKAGAAYKVSQNLALTADYTYRNWDLQKGSITSLGVKYSF
>CP027856.1|AVP93285.1|1830594_1831149_+|DUF3157-domain-containing-protein
MKPLSRLLLALCLSPMLAQAAPLTQVTLADGRQVQLNDDFTWEYLLVKPAEASPGKTVTASVAAPVLTEQALANPDLLAQATRDGITVTLNQVEGEDPLRLQFMVSNTGSRNVVRVNGSLTLFSAEGVQLSTQPVRFWVGENRLPESYLRKGEQRPSRAIELARPANLTGKPLVRVQIDEVEFR
>CP027856.1|AVP93284.1|1829669_1830500_+|hypothetical-protein
MDANVVALNRGYDQLFQAREQRLINTLAGYGELLVSFSGRLESCYSMDLCRASGVRFRAITLDNPTLSRKAVARAKRYCKHYGIAHQVIKTDEMIFSVHLGHLAEVTDPVRYLCQQLEHDDGPPILMSASAEEMREYLRRFDSVPANTLWIFAEQGMTNRDFRYGFHKRQLALWGAGGEACLSQRFSDIESLDRRHLRMVDMAEQMLFDMGLDGAQVFFHTLADRVTTLARVRVPQRMRALVFDMQPSIQKALQSAQFDLVTLDMVSGEDPQLLVI
>CP027856.1|AVP93283.1|1828921_1829518_+|HAD-family-phosphatase
MAIIFDLGRVVVSWDPVGIVRSVRGPDGAEVLAELLFNHPDWLEVDRGTLSLHAMARQAEERTGLPMAQNLAILQAVPASLLPDPAMVALIEALHSAGHRLYALSNMGHASIDWLEQQEFWRFFSGKVVSARVRMLKPEPDIYRYLLVSFDLKAGECFFIDDSPANVAAARALGLQGMVFTDVPACRRQLVEQGYLPA
>CP027856.1|AVP93282.1|1827423_1828596_-|bifunctional-chorismate-mutase/prephenate-dehydratase
MATLDEIRQDITQLDQELLALLAKRKTLSIEVARAKQANPRPIRDTQREQDLLVALIQKGRALGLDAQYITRIYHTIIEDSVLSQQAYLQSLLNPQQQEPMTSVAYLGPRGSYSSLAARKYLARYKDQVIEVNCQNFREVLDTVESGRAAFGVLPIENTSSGSINEVYDVMQHTTLSIVGELTYPIEHCILTAVPTELGRIKTFYAHPQVFQQCSHYLSKLEGARHEICDSSSSAMMKVKELGSPDAAAIGSAAGGELYGLDVLAEQLANQKENYSRFIVVARKPIDVAPQIPAKTTLIMSTSQKPGSLVEALLVLRSHEINMTKLESRPVQGNPWEEMFYLDVSANLQTPEMQAALLELTKITRYVKVLGCYPSEDVKPTAVPPVLMGS
>CP027856.1|AVP93281.1|1826662_1827088_+|hypothetical-protein
MRILFGLMMALLLTACSGNRVVNYDVAEKPDDFPVLKAVGYAVIDIQPGPSQSEKMLQAIRASKMDAYRELAEQLNGQQVRGQSSYKDLTQTSNSLDVSVAGMVRGARVVATYPRGNTYATELELDTRNLFHLNQLMAGQF
>CP027856.1|AVP93280.1|1826028_1826649_+|hypothetical-protein
MNRIITALAVALALAGCGSADPINRDQGDPRQAAKGMELNWLVARMTDQLMERKSLTTLSEPIAVASFVDLDTLKDTNWMGLQIEESFIYELNRRGEVVVDFKTTGSIQVTPSGDFVMSRNYRDLSARLPISRILTGTFSRNQQGILVNARIIDLRTKMVETTAQSLIPQQYLSGASNSFGRASVNRGYLMRGGQSASGHLVNLTP
>CP027856.1|AVP93279.1|1825739_1825943_-|hypothetical-protein
MIRQRALGGANKEAGTGKCGKPRTLSPEQGMDLAFICAPGANQASVHEAAHPPPGAQEGFIYSRCTL
>CP027856.1|AVP93278.1|1824588_1825743_-|hypothetical-protein
MKVVLLSTLLLASLSARAELIEAQGSAAILGGDEVYAREQATRDALRQALLASGASVSSIQRLENGSLRSEQIQIRSGGDIRQYRLKREEVRNGRMYITLVADIQAERQICQTQHYAKDLTLVRLRMRYPDQASTGALDDMPADLSRRLFETLAAAPQGVVARQWLDENLRIDPLHLQQGDRSALEEIKALSLRTDSQYLVLGSIDDLSLEPQGNQLTSWYKDPIRNFRMQLYLFDGINGSLLGRKEYQGRANWTFSKRELVGSNSGQFWQSSYGQEVSYQLKEAAQDIIAELACAPVTARIVAQHERGPHISLGRRNGVKLGDQFRVQHSADFIDPYGKSRVMRNPADGLFEVVQVFEDGAIISSQNKYSPFNVQIGDLAVLE
>CP027856.1|AVP95501.1|1823364_1824189_-|polyphosphate-kinase-2
MASKKKSKAEQPVPVAEPKPLGNKAYEKELRRLHVELVKLQQWVVHKGLKVCIVFEGRDGAGKGGTIKAITERVSPRVFRVIALPAPTEREKSQLYFQRYIPHLPAAGEIIIFDRSWYNRAGVERVMGFCSQEASDKFLAGAPMVEQAMVDSGIILLKYWLEVTPEEQERRLRDRIDDGRKIWKLSPMDIKSFDRWDDYTRARDAMFTATDTAWAPWFLARSEDKKRVRLNIISHLLSHIPYEELPAEPVKLPKRKIGKVKASEHPFRVIPELF
>CP027856.1|AVP93288.1|1833211_1834099_+|MerR-family-transcriptional-regulator
MSDLPQDDATKPDEGIYPIREVSRLTGVNAVTLRAWQRRYGLVQPARTDKGHRLYSEQDIRQIGEILSWLERGVSIGQVKGLLSEPQSQPVSDHWQQTLEQFSQALLAFNQRKAEAELNDLLASYPFELVRSRVLQPLVERLLGLWRERPDGELLQQVWLGWLHTRFARHLIEQEKGVPVTLASWGQVGPLDLVWAAYELIGQGYEVQLLGAVEPRHVALLEGRAVTPWRVLLGAGLGKPAQAADWPAGTRLFGELGRLYDAEWLAAHGWRATLAEVMADKPAARGLSGRGSKKS
>CP027856.1|AVP93289.1|1834095_1835532_+|deoxyribodipyrimidine-photo-lyase
MRLVWFRNDLRLADNPALRSCCGNAGADEEPVAALFVISPTQWRQHKMAPIRQRFILAQVDALGLELAALGIELHLLRVETFAETPAALASLCRELGVTRLYANQAIELDEQRRDHGVTAALAEQEVSCHWLNGCCVLPPGRVLTGSREMFKVFTPFSRAWLKALDEDGFVIHRAPAPRGDSLPWQPLAERDFVDEALGETTPDPRWPVGEAEALRRLHAFLDQGVLDYGETRDFPAMAGTSVLSPYLAAGIISPRQCVAALQQRLGGRPQSKAQPGFVWLNELIWREFYRHLLVLIPTLSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGDFIRTWVSELADMPATYVHQPHDWLRLKGRQDYPAPMVDHAVARVRAIEMFRDLEKK
>CP027856.1|AVP93290.1|1835533_1835962_+|transcriptional-regulator
MNDALAHFIVLYLQLDKHQLHRLPEIYADQVVFIDPAHRIEGLAALTRYFSSLYGRLKECRFEITSRQQQGNEAWLSWVMIFAHPRIAGGRPVRVEGATRLQFDAWGKVCLHRDYFDLGAMLYEQLPLLGPVVRAIKGRLGA
>CP027856.1|AVP93291.1|1835958_1836693_+|short-chain-dehydrogenase
MSGRVLITGATSGIGRQLALDYLRAGWQVWGCGRDGERLQALAHEGITPLQFDARDSAAMAEVAAGLPTLDLLILNAGNCEYMDVAEGFDSALFARVIETNLVATGHTLAAFLPRLAAGSRLAIVSSSVSWLPLPRAEAYGASKAALDYLAATLRLDLAALGIGVTLIRPGFVQTPLTAKNDFPMPCLVTVEEASRAIMGGLAAGRHQIHFPRRFIWLLRLLGALPTGLWLRLGRTLISKGSPS
>CP027856.1|AVP93292.1|1836689_1837949_+|FAD-dependent-oxidoreductase
MKKKIAIIGSGISGLSAGFLLHKLHDITLFEAAPLLGGHTATVDVSLAGRSYAIDTGFIVFNDRTYPNFLKLLERIGVARQPTEMSFSVKSPQGLEYNGHNLDTLFAQRSNLLSPRFYRFVAEILRFNREARAWLAELGRHGGGSEPTLGDFLQLGEFSDYFARHYILPMGAAIWSSTLADMRAFPLGFFLRFFANHGLLDVANRPQWYVIPGGSREYIGPLTAGWLPRIRLACPVQGIRRTAEGVQVLSGYGEEQFDEVILACHSDQALALLTDASEGEQAILGDMAYQANDVWLHTDVSCLPARPKAWASWNYLLGDDDEARPLVSYNMNILQGISSPQPFCVSLNPKGRVDESKVLRRFVYHHPVFNQASIAAQQRRAEICGRQHTHFCGAYWYNGFHEDGVRSALDVASRFGASL
>CP027856.1|AVP95502.1|1837966_1838701_+|DUF1365-domain-containing-protein
MDTISAIWQGSVRHRRFAPRSHAFSYGLFMLGLDLDELPGLSQGRWFGVERAGLLSFRRSDYLSGSEGPLKQAVWDKVTALGGSAEPDGRVLLLGNVRCLGFYFSPVNFYFCYREGEARYLLAEVSNTPWNERHYYLLDLAALAPHDKAFHVSPFMGLAMRYHWRIRAPAQETLIHIESHPTSGEAKLFDATLALRREPLSRKGLVALLARWPWMTLKVLLGIYWQALRLFIKRTPIFTHPESR
>CP027856.1|AVP93293.1|1838700_1839957_+|SAM-dependent-methyltransferase
MELAQSTLSASFIDKGARQLLLSLLGRLEQGQLLLRDGNERHSFGVAGTDLHAEVIVQDPAFYRRLLLGGSIAAGETWVEGLWTSPDPVALVRLLARNLTLLDTLERRLGWLSFPFNKVRHWLNRNTLTGSRSNIAAHYDLGNTLYQGFLDSHMQYSSAIYPSAEASLEQGQQAKLRTICERLELRPEDHLLEIGTGWGGLAVYAARHYGCRVTTTTISQAQHDYAKEWIAREGLEDRITLLLEDYRKLEGSFDKLVSIEMIEAVGHAFLPDYFRQLSRLLRPGGRLLIQAITIADQRHAQYVRGVDFIQRYIFPGGCLPSVSQMAGLLARETDMQLVRLHDHGHHYARTLAHWCERFLALAPELPRLGYSQDFIRLWHFYFAYCEGGFWERAISLVQLEAAKPGPLGWSGDLPVSSH
>CP027856.1|AVP93294.1|1839959_1840439_+|DUF2878-domain-containing-protein
MWQWAHLLGFNLYWLLAVKWQQPGPLLLMLLLHFLFSPRRRQDWRLIPVALAGCLLDILLWQLGLFQFPSGFPLWLLLLWCGFALTLSHGLRWLRPLPRWQQALFGMVGGASSYVAGAAMGAVHLPWGIWISTALLAVIWMWWLPVLLWVTVTLEGEPR
>CP027856.1|AVP93295.1|1840435_1840654_+|hypothetical-protein
MNTFSTDALLFSKWTKESQYELADRFYLVVACQRDAGGQLASVVMQDINTLQEQEMDWHELEDPAHWHMGWN
>CP027856.1|AVP95503.1|1840661_1841153_+|hypothetical-protein
MAALTLIVATAVQGSAAPWQQLRPVGQGEMSWLWFKLYDATLYSESGRYEPGRYPQALTLTYARAIEREELLSATAAEWQRLGLGSETDRQRWLGRLAALWPDVGAGDRLTFYVDSAGAGHFWWQDKPLGSLADPQFSAAFLAIWLADNSRDPALTRRLRGQP

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Crispr_ID: CP027856_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_14

1844180-1844284

Orphan

Consensus_repeat	Method
TGGCCGAGATACTGGCTGCCTGATC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP027856_14

>merge|CP027856|14|1844180-1844284|CRISPRCasFinder
TGGCCGAGATACTGGCTGCCTGATCAAGGTGCTGGAGACATAGTCCGGTCTCAAGGGAACCACCACGGCCGAGGCGGACTTGGCCGAGATACTGGCGGCCTGATC

>CP027856|14|14|1844180-1844284|CRISPRCasFinder
TGGCCGAGATACTGGCTGCCTGATC	AAGGTGCTGGAGACATAGTCCGGTCTCAAGGGAACCACCACGGCCGAGGCGGACT
TGGCCGAGATACTGGCGGCCTGATC

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95502.1\|1837966_1838701_+\|DUF1365-domain-containing-protein	unknown	unknown	gnl\|CDD\|377778
CP027856.1\|AVP93297.1\|1841840_1842308_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP027856.1\|AVP93299.1\|1845490_1846516_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
CP027856.1\|AVP93305.1\|1854789_1855872_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|281730
CP027856.1\|AVP93290.1\|1835533_1835962_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378915
CP027856.1\|AVP93291.1\|1835958_1836693_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|180399
CP027856.1\|AVP93296.1\|1841167_1841710_+\|DUF3833-domain-containing-protein	unknown	unknown	gnl\|CDD\|378992
CP027856.1\|AVP95503.1\|1840661_1841153_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374318
CP027856.1\|AVP93304.1\|1853501_1854581_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP027856.1\|AVP93301.1\|1848323_1851449_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
CP027856.1\|AVP93300.1\|1846696_1847446_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239321
CP027856.1\|AVP93306.1\|1855979_1856276_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|378968
CP027856.1\|AVP93295.1\|1840435_1840654_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370527
CP027856.1\|AVP93303.1\|1852776_1853505_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP027856.1\|AVP93298.1\|1844374_1845406_+\|hybrid-cluster-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|99811
CP027856.1\|AVP93292.1\|1836689_1837949_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225459
CP027856.1\|AVP93302.1\|1851463_1852762_-\|efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|169982
CP027856.1\|AVP93293.1\|1838700_1839957_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
CP027856.1\|AVP93294.1\|1839959_1840439_+\|DUF2878-domain-containing-protein	unknown	unknown	gnl\|CDD\|378555
CP027856.1\|AVP93307.1\|1856363_1856732_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378968

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95502.1\|1837966_1838701_+\|DUF1365-domain-containing-protein	gnl\|CDD\|377778	pfam07103, DUF1365, Protein of unknown function (DUF1365). This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.	2.02369e-101
CP027856.1\|AVP93297.1\|1841840_1842308_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.99773e-56
CP027856.1\|AVP93299.1\|1845490_1846516_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
CP027856.1\|AVP93305.1\|1854789_1855872_-\|hypothetical-protein	gnl\|CDD\|281730	pfam03773, ArsP_1, Predicted permease. This family of integral membrane proteins are predicted to be permeases of unknown specificity.	7.70344e-41
CP027856.1\|AVP93290.1\|1835533_1835962_+\|transcriptional-regulator	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.74996e-13
CP027856.1\|AVP93291.1\|1835958_1836693_+\|short-chain-dehydrogenase	gnl\|CDD\|180399	PRK06101, PRK06101, SDR family oxidoreductase.	1.7183e-82
CP027856.1\|AVP93296.1\|1841167_1841710_+\|DUF3833-domain-containing-protein	gnl\|CDD\|378992	pfam12915, DUF3833, Protein of unknown function (DUF3833). This is a family of uncharacterized proteins found in Proteobacteria.	6.71704e-84
CP027856.1\|AVP95503.1\|1840661_1841153_+\|hypothetical-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	0.000218185
CP027856.1\|AVP93304.1\|1853501_1854581_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.31101e-52
CP027856.1\|AVP93301.1\|1848323_1851449_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
CP027856.1\|AVP93300.1\|1846696_1847446_-\|DsbA-family-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	8.79931e-64
CP027856.1\|AVP93306.1\|1855979_1856276_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	3.10082e-13
CP027856.1\|AVP93295.1\|1840435_1840654_+\|hypothetical-protein	gnl\|CDD\|370527	pfam09493, DUF2389, Tryptophan-rich protein (DUF2389). Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.	1.45882e-11
CP027856.1\|AVP93303.1\|1852776_1853505_+\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.23818e-76
CP027856.1\|AVP93298.1\|1844374_1845406_+\|hybrid-cluster-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|99811	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.2012e-112
CP027856.1\|AVP93292.1\|1836689_1837949_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	2.3604e-163
CP027856.1\|AVP93302.1\|1851463_1852762_-\|efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	3.35916e-88
CP027856.1\|AVP93293.1\|1838700_1839957_+\|SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	3.15563e-107
CP027856.1\|AVP93294.1\|1839959_1840439_+\|DUF2878-domain-containing-protein	gnl\|CDD\|378555	pfam11086, DUF2878, Protein of unknown function (DUF2878). This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.	1.36614e-19
CP027856.1\|AVP93307.1\|1856363_1856732_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	1.49932e-12

>CP027856.1|AVP93297.1|1841840_1842308_+|DNA-starvation/stationary-phase-protection-protein
MKSPIGLDTVQSQALAAELNNLLASYQILYMNVRGFHWNIRGNQFFELHLKFEEIYNDLLLKVDALAERILTLDGVPLHSFSDYIKVSAIPEQKGLHDGRACVESLLESFRELLVAQRRILAQAAEAGDEGTASILSDYVQQQEKLVWMLRAYLD
>CP027856.1|AVP93296.1|1841167_1841710_+|DUF3833-domain-containing-protein
MPLYRTWRMLLLWPLLLLAGCGTSLDDYRGQGPNWDLARFFNGKLVAHGLVTDRSGEVTSRFRVEMQGRWREGKGELFEQFYFDDGRKQTRTWFLSKGVDGHWRGTASDVVGEAVGKTAGFALNWRYQLDLALPDGEVVRVSFDDWMYLLDQDRLINRAAISKFGIHLGEVILYIERIER
>CP027856.1|AVP95503.1|1840661_1841153_+|hypothetical-protein
MAALTLIVATAVQGSAAPWQQLRPVGQGEMSWLWFKLYDATLYSESGRYEPGRYPQALTLTYARAIEREELLSATAAEWQRLGLGSETDRQRWLGRLAALWPDVGAGDRLTFYVDSAGAGHFWWQDKPLGSLADPQFSAAFLAIWLADNSRDPALTRRLRGQP
>CP027856.1|AVP93295.1|1840435_1840654_+|hypothetical-protein
MNTFSTDALLFSKWTKESQYELADRFYLVVACQRDAGGQLASVVMQDINTLQEQEMDWHELEDPAHWHMGWN
>CP027856.1|AVP93294.1|1839959_1840439_+|DUF2878-domain-containing-protein
MWQWAHLLGFNLYWLLAVKWQQPGPLLLMLLLHFLFSPRRRQDWRLIPVALAGCLLDILLWQLGLFQFPSGFPLWLLLLWCGFALTLSHGLRWLRPLPRWQQALFGMVGGASSYVAGAAMGAVHLPWGIWISTALLAVIWMWWLPVLLWVTVTLEGEPR
>CP027856.1|AVP93293.1|1838700_1839957_+|SAM-dependent-methyltransferase
MELAQSTLSASFIDKGARQLLLSLLGRLEQGQLLLRDGNERHSFGVAGTDLHAEVIVQDPAFYRRLLLGGSIAAGETWVEGLWTSPDPVALVRLLARNLTLLDTLERRLGWLSFPFNKVRHWLNRNTLTGSRSNIAAHYDLGNTLYQGFLDSHMQYSSAIYPSAEASLEQGQQAKLRTICERLELRPEDHLLEIGTGWGGLAVYAARHYGCRVTTTTISQAQHDYAKEWIAREGLEDRITLLLEDYRKLEGSFDKLVSIEMIEAVGHAFLPDYFRQLSRLLRPGGRLLIQAITIADQRHAQYVRGVDFIQRYIFPGGCLPSVSQMAGLLARETDMQLVRLHDHGHHYARTLAHWCERFLALAPELPRLGYSQDFIRLWHFYFAYCEGGFWERAISLVQLEAAKPGPLGWSGDLPVSSH
>CP027856.1|AVP95502.1|1837966_1838701_+|DUF1365-domain-containing-protein
MDTISAIWQGSVRHRRFAPRSHAFSYGLFMLGLDLDELPGLSQGRWFGVERAGLLSFRRSDYLSGSEGPLKQAVWDKVTALGGSAEPDGRVLLLGNVRCLGFYFSPVNFYFCYREGEARYLLAEVSNTPWNERHYYLLDLAALAPHDKAFHVSPFMGLAMRYHWRIRAPAQETLIHIESHPTSGEAKLFDATLALRREPLSRKGLVALLARWPWMTLKVLLGIYWQALRLFIKRTPIFTHPESR
>CP027856.1|AVP93292.1|1836689_1837949_+|FAD-dependent-oxidoreductase
MKKKIAIIGSGISGLSAGFLLHKLHDITLFEAAPLLGGHTATVDVSLAGRSYAIDTGFIVFNDRTYPNFLKLLERIGVARQPTEMSFSVKSPQGLEYNGHNLDTLFAQRSNLLSPRFYRFVAEILRFNREARAWLAELGRHGGGSEPTLGDFLQLGEFSDYFARHYILPMGAAIWSSTLADMRAFPLGFFLRFFANHGLLDVANRPQWYVIPGGSREYIGPLTAGWLPRIRLACPVQGIRRTAEGVQVLSGYGEEQFDEVILACHSDQALALLTDASEGEQAILGDMAYQANDVWLHTDVSCLPARPKAWASWNYLLGDDDEARPLVSYNMNILQGISSPQPFCVSLNPKGRVDESKVLRRFVYHHPVFNQASIAAQQRRAEICGRQHTHFCGAYWYNGFHEDGVRSALDVASRFGASL
>CP027856.1|AVP93291.1|1835958_1836693_+|short-chain-dehydrogenase
MSGRVLITGATSGIGRQLALDYLRAGWQVWGCGRDGERLQALAHEGITPLQFDARDSAAMAEVAAGLPTLDLLILNAGNCEYMDVAEGFDSALFARVIETNLVATGHTLAAFLPRLAAGSRLAIVSSSVSWLPLPRAEAYGASKAALDYLAATLRLDLAALGIGVTLIRPGFVQTPLTAKNDFPMPCLVTVEEASRAIMGGLAAGRHQIHFPRRFIWLLRLLGALPTGLWLRLGRTLISKGSPS
>CP027856.1|AVP93290.1|1835533_1835962_+|transcriptional-regulator
MNDALAHFIVLYLQLDKHQLHRLPEIYADQVVFIDPAHRIEGLAALTRYFSSLYGRLKECRFEITSRQQQGNEAWLSWVMIFAHPRIAGGRPVRVEGATRLQFDAWGKVCLHRDYFDLGAMLYEQLPLLGPVVRAIKGRLGA
>CP027856.1|AVP93298.1|1844374_1845406_+|hybrid-cluster-NAD(P)-dependent-oxidoreductase
MTSTSLSLRCIGRRADTHDVTSWQFVATEGTLPPVLAGQCVTLHTEIDGQPLCRAYTLSSSPQDACWQVTIKDVGLVSHHLHQSLQVGDQIRADGPFGDFNLTALPCERPLLLSAGSGITPMWAMLRDELVKRPEADIRFVHSARSPQDVIFADELAALAEAYAGLRLALVLERVPERVLEEAPAAHPWVGRLTPSMLKELAPDLLGRHVYLCGPAPYMAAVSTMLAELGLPAAQLHQESFGLPAVTSDAAPVAAGGDHFWLTLKKSGKKVKILPGQTLLAALEGAGETMAAACRAGVCGACRCTTTGEIERQSVMTLSPQDLESGVALACSCTARGDVGLDY
>CP027856.1|AVP93299.1|1845490_1846516_+|UDP-glucose-4-epimerase-GalE
MTILVTGGAGYIGSHTLVELLGAGQQVVVLDNLSNSSPESLRRVERITGKAVTFVEGDILDRECLQRLFAAHKIESVIHFAGLKAVGESSQIPLTYYQNNVTGTLVLCEEMAKAGVFRLVFSSSATVYGDPASVPLREDFPTSATNPYGRSKLMVEEILRDLSQSDPRWAIVLLRYFNPVGAHESGLIGEDPNGIPNNLLPYISQVGVGKLKELGVFGNDYPTPDGTGVRDYIHVVDLAIGHLKALARIGSDTGVFTYNLGTGQGYSVLEMVKAFETASGRPIPYQIKPRRPGDIAECWAEPTLARDELGWQAERGLEQMMVDTWRWQSQNPNGYGPATKP
>CP027856.1|AVP93300.1|1846696_1847446_-|DsbA-family-protein
MRIKHALFAALTGATLLAAPVQASELTKSDVEQIVRDYLVKNPEILVEMSNALRAKQESQQAENDKTLIEAHAKQLFANQDPETGNPKGSLTVVEFFDYNCGYCKRAHPLIQQLLAEDKDIRYIYKQFPILSETSYYAARAALAVKLGQPDKYQAFHDKLYAHQGPLSDEAQVKQLAEAAGVNWSKVEAKIKDGSIDQNLGTNRALAEAMSISGTPAFIIGDQILRGAPRDLASLKGFIKDVRAGKSIQ
>CP027856.1|AVP93301.1|1848323_1851449_-|multidrug-efflux-RND-transporter-permease-subunit
MPQFFIHRPVFAWVIALFIVLAGVIAIPKLPISRYPSVAPVSVTLYATYPGATPQTLNDAVVSLIERELSGVKSLLYFESSVDASGSAQITATFKPGTDPELAQMDVQNRIKAVEPRLPQAVRQNGLQVESASSGFLMMVGMTSPDGRFDEVALNDYMARNIVQELRRIEGVGRVQLFGAEQAMRIWVDPAKLAAYGLTIGEVAQAIEQQNVQIAPGRIGDEPALPGQHLTVPLTVQGQLTTPEAFAAIVLRAGADGAKLVLGDVARVELGAQSYTFANRENGVAATSAAIQLSPGANAVRTADAVRTRLAQLAPTLPAGMVYSIPFDSAPFVKVSIDKVIHTLLEAMVLVFLVMFLFLQNLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENVERLMATRGLSPREATSQAMKEITGAVIGITLVLTAVFIPMAFGSGSVGVIYQQFTLSMAVSILISAFLALTLTPALCATLLRPVSPDHHEKRGFFGAFNRGFERLTAGYGARVTRLVGRSGRMMAAFVALCAVLAVAAAQLPSSFLPDEDQGYFMTSIQLPTGATSERTLAVIKEFEAHVASREALDTNLVVQGFSFSGAGPNAAMAFTMLKDWNQRHGATAAEEAELAQAAMANSREGTVMSLLPPAIDELGTSSGFTLFLQDRANRGEAALLAAQAQLLALAAQSEVVSDVYPDSLPPGESIHLEINRQKAEAMGLSFTSVSSTLSTAMGSLYVNDFPNGGHMQQVILQADAKARMQLDDVLGLRVRNASGGMVPLREVVTPVWSESPQQMMRFEGFPAVRLSGSAAPGMSSGAAMAEMERLVAQLPQGFALAWTGQSLQERQSAAQAPMLMLLSALVVFLVLAALYESWSIPLSVMLVVPLGLLGTVAAVMLRDMPNDVFFKVGMITIIGLSAKNAILIVEFARQLHAEGRTLIDAAVTAARLRLRPILMTSLAFTLGVMPLMLASGASAETQHAIGTGVFGGMISGTLLAIFFVPVFFVFVIGTQERFQVWRARRVHRGEQ
>CP027856.1|AVP93302.1|1851463_1852762_-|efflux-transporter-periplasmic-adaptor-subunit
MVGLNFITASMNSPQSLESFAIAPLHNARSMCSRGNSTPGRRFNEVSMMFVKQRYAGALLAVIAAFGLAGCDGAPQAQDAPAPLQVSVMTLAGEDLVISEDLPARVAALRSAEIRAQISGIVQRRLFEQGAEISAGTVLFQINPAPFKTDVDSAAAALQRAEAVLARARIQVDRLVPLLRTEAISRQTYDDALSLRDQAAADVAQAKATLARHKLNLQFASVEAPIAGRIDQALVSEGALVSPTDATPMARIQQIDQVYVDVRQPASVLETLRQQAGSTAPELAVEILGSDGKPLGMQGHILFSGIEVDAGTGDVLLRVLVDNPERRLLPGLYVQARIPRAHYASALSVPQQALVRTSGQTSVWVVDASGQAQLVPVNTAELVARHYRIASGLSAGQRVVIEGIDRLTPGAQVIAHPWQPPAVSQQADADIR
>CP027856.1|AVP93303.1|1852776_1853505_+|DNA-binding-response-regulator
MSYLHASASPVAQSLVLIAEDEAEIADILAAYLQRHGLRTLHAADGREALAMHQAFKPDLLLLDVQMPQLDGWQVLSEIRARGDTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRTKAATPATARVLRVGPFQIDLESHEASIFRDDGQQRLELTLTEFKLLASLMRAPKRVFSRAELLTHCLPEGDTQERTVDSHISKLRKKFEAHGIQGVPASVWGVGYRFGGDA
>CP027856.1|AVP93304.1|1853501_1854581_+|two-component-sensor-histidine-kinase
MKPAPGLRRQIIHALGLMALGIISLAVIGTYVFYAIAVTYLPGSISESWIPSRVEMIWVGSTILIALGMALYVAVRLSRRILTPLNSVANSLREVAEGRLDARVPIDEQAIGETAQLVRDFNTMAERLQSMTREREFWNAAIAHELRTPVTILRGRLQGLAEGVFLPERELFESLLRQVEGLTHLIEDLRVLSLNDSGHLELQRTEVRLADELSVVLDAFATPLAASGFMLKRELDAELPVCCDALRIRQALMALLENAQKHAVPGMLTVRLQRSGALCTLSVEDEGPGIGEEVAAYIFDAFRRGDPSRSRKSGGSGLGLAVVKAIAEAHGGSALCQPNGRGGTTFLLSWPILAADERP
>CP027856.1|AVP93305.1|1854789_1855872_-|hypothetical-protein
MNDWLTMLTDASRMFVFLAVELSVLFLVISAAVSLIRQKIPDAKIQAMLGARKGRGYLISAVLGALTPFCSCSTIPMLRGLLSAKAGFGPTLTFLFVSPLLNPIIVGLMWVTFGWKLTVLYAVIAAGVSVLASMLLDMLGFERHVIDPKEAKPSSCGTACGSTTSEPVSVSATACCSSKDIKSVTPLKAQASGCTVQPEAAPALSCCADGTAALTRAPVIPTAFAKARADAWQQFREVLPYLLLGVLVGSFIYGFIPAEWIAAHAGADNPLAIPFSAVVGIPLYIRAEAVIPLASVLLGKGMGMGAVMALIIGSAGASLTEVILLKSMFRTPMMVAFLTVILGMAILMGYLAQGLSAALA
>CP027856.1|AVP93306.1|1855979_1856276_+|ArsR-family-transcriptional-regulator
MELEAVAKALKELGHPTRLFIFKHLVKAGEQGLPVGDLQKQLAIPASTLSHHIAALVSVGLVKQNRESRTLLCVSQYEVLEEIIAFFREECCVNDKRE
>CP027856.1|AVP93307.1|1856363_1856732_+|ArsR-family-transcriptional-regulator
MNKEIATKVFESLASGIRLDVWRLLVKAGLEGQVAGQLASELDIAPNTLSFHLKAMLHAGLLSVEQEGRFLRYRANIPLMLSLIGYLTEECCAGHPEACGVMRAESGCSPHVLPAQPCCNEE

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Crispr_ID: CP027856_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_15

2405810-2405914

Orphan

Consensus_repeat	Method
CGGTCGGTTCAACGGCTAAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_15

>merge|CP027856|15|2405810-2405914|CRISPRCasFinder
CGGTCGGTTCAACGGCTAAGGCATGGTTGGTGCAACAAGGGTTATTGGTATGAACAAGATGAGCATCAATAAACAGATTACCGGTCGGTTCAACGGCTAAGGCAT

>CP027856|15|15|2405810-2405914|CRISPRCasFinder
CGGTCGGTTCAACGGCTAAGGCAT	GGTTGGTGCAACAAGGGTTATTGGTATGAACAAGATGAGCATCAATAAACAGATTAC
CGGTCGGTTCAACGGCTAAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95537.1\|2408187_2408724_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273565
CP027856.1\|AVP93734.1\|2406842_2408162_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224173
CP027856.1\|AVP93735.1\|2409000_2409903_+\|homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|376828
CP027856.1\|AVP95539.1\|2414826_2415678_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270347
CP027856.1\|AVP93736.1\|2409912_2411313_+\|arginine:ornithine-antiporter	unknown	unknown	gnl\|CDD\|129983
CP027856.1\|AVP95538.1\|2413768_2414755_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP027856.1\|AVP93723.1\|2392877_2393504_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
CP027856.1\|AVP93737.1\|2411382_2412258_-\|sterol-desaturase	unknown	unknown	gnl\|CDD\|225546
CP027856.1\|AVP93733.1\|2405939_2406650_+\|phosphate-transport-system-regulator-PhoU	unknown	unknown	gnl\|CDD\|182974
CP027856.1\|AVP93732.1\|2404949_2405768_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184582
CP027856.1\|AVP93724.1\|2393647_2394676_+\|DUF2066-domain-containing-protein	unknown	unknown	gnl\|CDD\|378267
CP027856.1\|AVP93739.1\|2412964_2413714_-\|peptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP027856.1\|AVP93728.1\|2399785_2399974_+\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93729.1\|2400158_2400698_+\|tRNA-adenosine(34)-deaminase-TadA	unknown	unknown	gnl\|CDD\|182786
CP027856.1\|AVP93730.1\|2400903_2403141_+\|phosphate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226956
CP027856.1\|AVP93726.1\|2395573_2396887_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
CP027856.1\|AVP93731.1\|2403192_2404842_+\|phosphate-ABC-transporter-permease-PtsA	unknown	unknown	gnl\|CDD\|227318
CP027856.1\|AVP93725.1\|2394736_2395480_+\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|181224
CP027856.1\|AVP93727.1\|2396959_2398567_-\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
CP027856.1\|AVP93738.1\|2412479_2412842_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182705

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95537.1\|2408187_2408724_+\|hypothetical-protein	gnl\|CDD\|273565	TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle].	0.00365869
CP027856.1\|AVP93734.1\|2406842_2408162_+\|hypothetical-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	6.50811e-134
CP027856.1\|AVP93735.1\|2409000_2409903_+\|homocysteine-S-methyltransferase	gnl\|CDD\|376828	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,.	5.84259e-72
CP027856.1\|AVP95539.1\|2414826_2415678_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270347	cd13629, PBP2_Dsm1740, Amino acid-binding domain of the type 2 periplasmic binding fold superfamily. This subfamily includes the periplasmic binding protein type II (BPBII). This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBPII proteins share the same architecture as periplasmic binding proteins type I (PBPI), but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBPII proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	2.66169e-134
CP027856.1\|AVP93736.1\|2409912_2411313_+\|arginine:ornithine-antiporter	gnl\|CDD\|129983	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines].	8.74256e-160
CP027856.1\|AVP95538.1\|2413768_2414755_-\|ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.11919e-88
CP027856.1\|AVP93723.1\|2392877_2393504_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	3.08223e-134
CP027856.1\|AVP93737.1\|2411382_2412258_-\|sterol-desaturase	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	3.01787e-38
CP027856.1\|AVP93733.1\|2405939_2406650_+\|phosphate-transport-system-regulator-PhoU	gnl\|CDD\|182974	PRK11115, PRK11115, phosphate signaling complex protein PhoU.	7.56791e-161
CP027856.1\|AVP93732.1\|2404949_2405768_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184582	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional.	0
CP027856.1\|AVP93724.1\|2393647_2394676_+\|DUF2066-domain-containing-protein	gnl\|CDD\|378267	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066). This domain, found in various prokaryotic proteins, has no known function.	3.78265e-68
CP027856.1\|AVP93739.1\|2412964_2413714_-\|peptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.85134e-152
CP027856.1\|AVP93729.1\|2400158_2400698_+\|tRNA-adenosine(34)-deaminase-TadA	gnl\|CDD\|182786	PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional.	6.20112e-89
CP027856.1\|AVP93730.1\|2400903_2403141_+\|phosphate-ABC-transporter-permease	gnl\|CDD\|226956	COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
CP027856.1\|AVP93726.1\|2395573_2396887_-\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
CP027856.1\|AVP93731.1\|2403192_2404842_+\|phosphate-ABC-transporter-permease-PtsA	gnl\|CDD\|227318	COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism].	1.9928e-93
CP027856.1\|AVP93725.1\|2394736_2395480_+\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|181224	PRK08084, PRK08084, DnaA inactivator Hda.	4.38815e-111
CP027856.1\|AVP93727.1\|2396959_2398567_-\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
CP027856.1\|AVP93738.1\|2412479_2412842_+\|hypothetical-protein	gnl\|CDD\|182705	PRK10759, PRK10759, YfiM family lipoprotein.	0.00908275

>CP027856.1|AVP93732.1|2404949_2405768_+|phosphate-ABC-transporter-ATP-binding-protein
MINVTPTSTQHTALDLLNLSPEQTALEVKDLNLYYGNKQALFNVNMKIPKGQVTAFIGPSGCGKSTLLRCINRMNDLVEICRIEGEIQLHGHNIYDKSVDVSALRRQVGMVFQRPNPFPKSIYENVVYGLRLQGINDRRTLDEAAERSLRGAALWEEVKDRLHDNAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELINELKSQFTVVIVTHNMQQAARVSDQTAFMYMGELIEYSNTNTIFTTPAKKKTEDYITGRYG
>CP027856.1|AVP93731.1|2403192_2404842_+|phosphate-ABC-transporter-permease-PtsA
MGKWFKSGAPWIWMTGGAVSLSLVAVLGLLLLIGWRGLVYFWPHPIYEWQLEDASGNKSVLIGEINDREMVPVERLRAAGQALEGEERELLTRYLVKTGNREFVDLDFRWVLETDIKSQSQPAELAMVERATNGNFYGYITSVKEDGKELTADLHPALQRVLARANALSEQANDLQKGDIGGINYQLERLRLKERKAELEGELTDALKADLAAQRQALNDRYLVLEKELFSLRAQADRDAITVKDMRGELVTMPMSKVLDVVWPNDMSLPAKVGHWFHQIGKFVSDDPREANTEGGVFPAIFGTVFMVLLMAIIVTPLGVVAAVYLHEYAGKNSLTKIIRIAVINLAGVPSIVYGVFGLGFFVYTLGGSLDQLFYPEALPSPTFGSPGVIWSALTLAILTLPVVIVSTEEGLARIPSTIRQGSLALGATQAETLWRIVLPMASPAIMTGLILAIARAAGEVAPLMLVGVVKLAPTLPMDGNFPYLHVERKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVTVIVGLNLTAIGIRNHLREKFRSLEH
>CP027856.1|AVP93730.1|2400903_2403141_+|phosphate-ABC-transporter-permease
MSSESLNLVMAGSRKRRIKDKLAKYGVTTGGALVLVALLLIFFYLLYVVKPIFNGASVEATSSFTLPTQGKTAWLGVEEQNEIGYRFNDQGQVSFFAVKADGGVKVGQVLGQASVAGDVTAVAVPAPGQKLIAYGFADGKATVVQPSFKVSYPNDVRVIEPSLQYPFGEEPVVIDPQGKALTRMVFEATKDKMATAAVTEDGRGVMTVMSGEENFLSGEVEWSSQNYAIPSLPRHVDQMLLTPNLRILFVREGNRLSVYDIHNLSDISLRDVMEINAPNADVTQVALLSGASSLLVGNDNGVISQWFEVAKDGKRQFTQIRDFKGDGPVALLTPEHFRKGFISAAKDGTINFFHATGEAKLLGETIEGGPLAALAISPRHNLLLTQQGNDFKVFEVENDHPEVTWSALWQQVWYEGYPEPMYVWQSTSASNDFEAKLSLVPLVFGTLKASFYAMLFAVPLGVAGAIYTAYFMSAGLRKYVKPTVEIMAALPTVILGFLAGLWLAPIIEGALPGVILLLLLLPMGMLLTALVWNYLPERGKSWLPEGWHAILLIPVLLLIGWGAFALSPLIENAFMHGDSRIWLTHEMGIKFDQRNSLVVGIAMGFAVIPTIFSIAEDAVFSVPKHLTQGSLALGATPWQTLSRVVILTASPGIFSAVMMGLGRAVGETMIVLMATGNTPIMDFSMFQGLRTLAANIAVEMPESEVGSSHYRVLFLAAFVLFVFTFMFNTLAEFIRQRLREKYSSL
>CP027856.1|AVP93729.1|2400158_2400698_+|tRNA-adenosine(34)-deaminase-TadA
MTPSENNDVFDQARQDERWMRHAMALAARAEGIGEIPVGAVLVLGDEVVGEGWNRSISAHDACAHAEIMAIRAAGITQQNYRLLDTTLYVTLEPCCMCAGALIHSRVKRVVYGARDLKTGAAGSVFDILQDPRHNHRVALTGGVLAEACSAQLSDFFKRRRAEKKAAREALKQSGGPAL
>CP027856.1|AVP93728.1|2399785_2399974_+|hypothetical-protein
MILRVQLLFYQGDADCFFIAQPRCNLGLGGSFGIIAAHLARCRWPWIRAERTGPSLMMNTDK
>CP027856.1|AVP93727.1|2396959_2398567_-|malate-synthase-A
MSAPAQTISSTRLRIQGEMLPDYAQILTPNAVALVSELVERFAPQRNELLKQRVARQARIDGGELPDFLPETAHIREGSWTVRGIPADLQDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPAWNKVIEGQINLRDAVNGTVSYTSPEGKAYTLNPDPAVLICRVRGLHLPEKHVTFDGDAIPGGLFDFALYFLHNHKALLAKGSGPYFYLPKLQSNLEGRWWSEVFAWTEDKFGLPRGTIKATVLIETLPAVFEMDELLYQMKDHIVALNCGRWDYIFSYIKTLKNHPDRVLPDRQVVTMDKPFLSAYSRLLIKTCHKRGALAMGGMAAFIPAKDPAVNAEVFAKVKADKEREANNGHDGTWVAHPGLADTAMGVFNVAIPAGAKNQIGVLREQDAPITAAELLAPCEGERTEAGMRTNIRVALQYLEAWINGNGCVPIYGLMEDAATAEISRTSIWQWIRHGKSLSSGQVVTKALFRQMLAEEQQVVKAELGDARWQSGRFAEASELMEQITCADTLIDFLTLPGYERL
>CP027856.1|AVP93726.1|2395573_2396887_-|isocitrate-lyase
MALTREQQIQAIEKDWAENPRWKGIKRGYSAEDVVNLRGSLQPAHTLAQRGADKLWDLIHGGARKGYVNCLGALTGGQAVQQAKAGIEAIYLSGWQVAADNNLSSTMYPDQSLYPANSVPSVVERINNSFARADQIQWANKVGPQDAGFIDYFLPIVADAEAGFGGVLNAFELMKGMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPSQEAVQKLIAARLAADVCGTTTLVIARTDANAADLLTTDADPYDAGFLTGERTAEGFYKVQAGIEQAISRGLAYAPYADMVWCETAKPDLDEARQFAEAIKALYPDKILAYNCSPSFNWKKNLDDATIARFQQELSDMGYKYQFITLAGIHNMWFHMYELAYQYARGEGMKHYVEMVQQPEFAAAERGYTFVAHQQEVGTGYFDKVTTVIQGGQSSVTALTGSTEEDQFH
>CP027856.1|AVP93725.1|2394736_2395480_+|DnaA-regulatory-inactivator-Hda
MIHLPANITVKAQRVKQPAQLSLAVQLPDDETFVSFYPGNNAHLITALKNAAIGQGAPFLYFWGAKGSGRSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNGLWERALFDFYNRWREKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLDELDDEGKLSALQLRAELRGFKLPIDVGRFLLNRLSRDMRTLLTTLNQLDNASFRAKRKLTIPFVKEILEL
>CP027856.1|AVP93724.1|2393647_2394676_+|DUF2066-domain-containing-protein
MLKRLATLLCCLPLMVSAAQVTDLYQGRAPTSGDMTASQSQALGEVLVKVTGRRDILTQPEVVKALATPGDYVQHYGYQDVGPVKFLKADFNVAKVNALVGQSKFPLLGPVRPQMAIWLVIDEGERRILPDQSSDGWSAALRGQAQAMGLPVSIPLMDLDDNMAVSATDVWGRFADPILKASERYGAEMVVLGKLTPEGEKWSIDWGLYGAKPGASGGAELTELTKGAGSGTQAEVAQGMADALAGWLVQQYGTRLSGVVSSQTLVVEGLSGIDGMIQIQKMLQGMASVTKVAIGKLEGDKVTFNLSLQGDKAELVRGLQLESRLHQIEDNESGLRYQWSQP
>CP027856.1|AVP93723.1|2392877_2393504_+|uracil-phosphoribosyltransferase
MKVVEVKHPLVKHKIGLMREGDISTKRFRELAKEVGSLLTYEATSDFETEKVTIDGWNGPVEVDQIKGKKVTVVPILRAGLGMMDGVLEHMPSARVSVVGIYRDEETLQPVPYFEKIVSNIEERLALVIDPMLATGGSMIATIDLLKKKGCQSIKVLVLVAAPEGIKALEAAHPDVELFCASIDQGLNEKGYIVPGLGDAGDKIFGTK
>CP027856.1|AVP93733.1|2405939_2406650_+|phosphate-transport-system-regulator-PhoU
MDNMNLNKHISGQFNAELENVRNQVLVMGGLVEQQLTDAISAIHIQDLDAARKIVANDHKVNAMEVAIDEECTRIIAKRQPTASDLRLVMAIIKTITDLERIGDVADKIARMLTDNANKPQPPLVSLENMGRRTIKMLHDVLDAFARMDLEAAIAVYKEDDKVDREYESIIRELMTYMMEDPRTIPQVLNVLWAARAIERVGDRCQHICEYIVYYVKGKDVRHTKADELSDLLGKH
>CP027856.1|AVP93734.1|2406842_2408162_+|hypothetical-protein
MSFADSLFFLMLLVAGSVFFSLSEISLAASRKIKLQVMADEGNRHAEKVLALQAQPGNFFTVVQIGLNTVAILGGILGESALNPAIKSLISGFYQGPWLSQISSIASFVFVTGMFILIADLMPKRLAMTMPERVAVVVVRPMLLCVTLLMPLVWFFNGLANALFRLLRVSMVRNDEITSDDIYAVMDAGAEAGVIQREEHQLIENVFELQSLGVTSAMTARESLIYFTLQEGEESIKAKIAEHPHNKFLVCDHNLDSIKGFVDAKELLIRVISGQSIDLNSGSLVQNVIIIPDTLNLYEAMEYFKNHRGDFAVVMNEYALVVGIVTMNDLMSTVMGEWATHAMEEQIVQRDENSWLVDGVTPISDVMRAFDIEEFPGNQNYETIAGFIMFMLRKIPKRTDSVKYAGYKFEVVDIDSYKIDQLLVTRVEPVLAEKPALES
>CP027856.1|AVP95537.1|2408187_2408724_+|hypothetical-protein
MPSYSRALSCVALALALGACSQSAPRKPAAAPKPAAPKAAVVAPQPDPDAVVQSAVAEPSPVFDEEYHGPDQGSLESVTALFARGYIESAMRETMLAAVHSDYPLLGMRDVRLTDPVAKFLTSAQARTTAHDYLYAGVQRRLGRPLSPAQWEQIWQGFPQQGRVSDWVKQTKRVLAGR
>CP027856.1|AVP93735.1|2409000_2409903_+|homocysteine-S-methyltransferase
MDTKDLWVLDGGMGRELARRGAPFRQPEWSALALMEAPETVREVHQAYVASGARVITTNSYALVPFHIGDERFAADGERLAALAGQLARDVADGQAGAVQVAGSLPPLFGSYRADLFEPARVSELATPLIRGLSPHVDIWLAETMSLIAEPLALKALLPGDGKPFWVSFTLEDEAPGSEPTLRSGERVADAVTALVPAGVSAILFNCCQPEVIEGALKVANARLQALGRTDIRLGAYANAFPPQPKEATANDGLDEIRADLGPQDYLGWAERWRGAGASLIGGCCGIGPEHIQALTSRLR
>CP027856.1|AVP93736.1|2409912_2411313_+|arginine:ornithine-antiporter
MKESKIGLWSLTALVFSSMVGAGIFSLPQNMAEVAGARAVLIGWGVTGVGILALAASFLYLSRLRPDLDGGIYSYARAGFGDLVGFFSAWGYWLCATIGVVGYLVIAFAALGSFVDTPEQVWFGEGNTLAAFIGESCILWAVHLLVARGVQQAALFNLVATLAKSLPLLLFILFACYWFDPVTFAADQQGSTLAVPVSEQVRNTMLITLWVFTGIEGAAVLSARARNKRDVGTATVLGVVLALLLYVLISVLALGILSRPELAALPNPSMAGLMAQMTGSWGKVLISVGLIVSVLASYVSWTLFSAEVPFSAARHGAFPAIFRRQNRNGTPIASLWLTSLTVQGCLLLVWLLGKGYTNLLLISTSMILVPYLLIGLFLLKLSLSGQGNGLVRAVALVSSGYGLWLLYAAGVEYLLLSLLLYGPGLLLFLYSRRQLGADQRLSGRERLLAGITLVSLVPAIWSFAHV
>CP027856.1|AVP93737.1|2411382_2412258_-|sterol-desaturase
MLELNWSNRMPHMDVQLLLLYLSPLFLAFVGWEMLYLRKHGAAFPTASYQWRDLFANAALALMHQGGDALAAIAIAYLYEGLWGWRLFDIELNLWSLLLLFLLQDLCYWLFHFASHHVRWLWASHVVHHSSERLNLSTAFRQSLMYPVSGMWLFWIPMILIGFPPEAVVATVLLSLGFQFFVHTQVVGKLGWLERVFNTPSHHRVHHASNPKYIDRNFAGVLIIWDRLFGTFVEEDLGEPCRFGITKPVHSFNPLTLTFHEWRDMLHDARGLPWSEKIKVLFGKPAGPGGT
>CP027856.1|AVP93738.1|2412479_2412842_+|hypothetical-protein
MRAVHLCVMFGLLSASAQANDSFNSELSHFAGGAAMGAGFTAVADHYGYREHRGWIGFGISTGIGVVGELASRNGDFSALDAGVNALGAALGAFATDRWILAPLVLPEQHYAGLMAGYRF
>CP027856.1|AVP93739.1|2412964_2413714_-|peptide-ABC-transporter-ATP-binding-protein
MNTRSKADPIIKATGVEKIYAGGVHALKNVSTQVAEGEVVVIVGPSGSGKSTFLRTLNQLETINDGDILIDGICLTEPGDVNKLREEVGMVFQSFNLFPHLNVLDNISLAPQKVRGLSRNDALDRAKALLLKVGLANKAESYPSQLSGGQQQRVAIARALAMQPRIMLFDEPTSALDPEMVGEVLDVMKGLAREGMTMVVVTHEMGFAREVADRVLFMESGELLVDEKPADFFDNPPSPRLRQFLSQVL
>CP027856.1|AVP95538.1|2413768_2414755_-|ABC-transporter-permease
MINPKSTRQMEKQPNQLLWQGVFLLLLLTAIFGIYKAVQSVDYTWRWERIPQYIAYQAEQKNFAEFDGTVVAGTTAAEKGQLFLQNDTDPNQRQAIAASGAQVGEGDTVFLGDTLDTQLSWTAGPIAWGVWVTVKLSLVAGVFAILLGTLAGLARLSPNPALRNLAVTYVELIRGTPLLVQIFIVYFFIGTVLNLDRFTAGVAALAVFTGAYVAEIVRAGITSIHKGQMEAGRSLGLTSAQTMRYVILPQAFKRVLPPLAGQFINLIKDSSLVSVISITDLTKAGREVVSSTFSPFEVWFTVALLYLVLTGTLSFLVRRLEVKYARSN
>CP027856.1|AVP95539.1|2414826_2415678_-|amino-acid-ABC-transporter-substrate-binding-protein
MPRSRTGSGSRPNTLSTETSLMIKKLILSTLLLCGLAHAAPSSTLDAVLERGVLRVGFDAGYQPFEMTNKQGQYIGFDVDLAKMVAKEMGVKVEFVNTAWDGIIPALLTDKFDVIMGGMTVTPQRNLRVNFADPYIVVGQTIVLRKDKAGEIKSFQDLNDPKYKIAVKLGTTGEQAVKRMIPKATLLQYETQDDAKLEVINGKVDAFIYDLPYNAIFASQNQGAVVHLDKPFTFEPLAWAIRKGDQDTLNWLNNYLRQIKGDGSYDRLYKKWFESNTWLNQLK

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Crispr_ID: CP027856_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_16

2490672-2490780

Orphan

Consensus_repeat	Method
GGATGGTTACCGCGGACGATTACGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_16

>merge|CP027856|16|2490672-2490780|CRISPRCasFinder
GGATGGTTACCGCGGACGATTACGCTGTGCTAATCGACCCTACGTGCATATTGCGCCCAACGCCTCTCCGCCAAGGGGAGAGTGGATTGTTACCGCGGACGATTACGCT

>CP027856|16|16|2490672-2490780|CRISPRCasFinder
GGATGGTTACCGCGGACGATTACGCT	GTGCTAATCGACCCTACGTGCATATTGCGCCCAACGCCTCTCCGCCAAGGGGAGAGT
GGATTGTTACCGCGGACGATTACGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP93792.1\|2484030_2485407_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
CP027856.1\|AVP93791.1\|2483329_2483827_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182734
CP027856.1\|AVP93801.1\|2498648_2499014_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95546.1\|2493503_2494214_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270422
CP027856.1\|AVP95542.1\|2480702_2481326_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198289
CP027856.1\|AVP93789.1\|2481901_2482630_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
CP027856.1\|AVP93794.1\|2487954_2488620_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93802.1\|2499245_2504636_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
CP027856.1\|AVP93800.1\|2497183_2497741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225030
CP027856.1\|AVP93798.1\|2494933_2495941_-\|DUF4401-domain-containing-protein	unknown	unknown	gnl\|CDD\|379574
CP027856.1\|AVP93795.1\|2488600_2489833_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93796.1\|2492381_2492669_+\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93790.1\|2482626_2483340_-\|DUF4269-domain-containing-protein	unknown	unknown	gnl\|CDD\|379463
CP027856.1\|AVP95544.1\|2491239_2492268_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
CP027856.1\|AVP95545.1\|2492843_2493098_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93793.1\|2485646_2487980_-\|recombinase-RecF	unknown	unknown	gnl\|CDD\|223496
CP027856.1\|AVP93788.1\|2479466_2479676_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93797.1\|2494439_2494937_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379571
CP027856.1\|AVP93799.1\|2496034_2496973_-\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|378311
CP027856.1\|AVP95543.1\|2481533_2481782_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP93792.1\|2484030_2485407_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
CP027856.1\|AVP93791.1\|2483329_2483827_-\|peptidylprolyl-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.34671e-90
CP027856.1\|AVP95546.1\|2493503_2494214_-\|hypothetical-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.31652e-27
CP027856.1\|AVP95542.1\|2480702_2481326_+\|glutathione-S-transferase	gnl\|CDD\|198289	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	5.17018e-49
CP027856.1\|AVP93789.1\|2481901_2482630_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	9.27671e-149
CP027856.1\|AVP93802.1\|2499245_2504636_+\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	4.86219e-20
CP027856.1\|AVP93800.1\|2497183_2497741_-\|hypothetical-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	3.60584e-51
CP027856.1\|AVP93790.1\|2482626_2483340_-\|DUF4269-domain-containing-protein	gnl\|CDD\|379463	pfam14091, DUF4269, Domain of unknown function (DUF4269). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved KTE sequence motif.	1.07855e-43
CP027856.1\|AVP95544.1\|2491239_2492268_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.30062e-52
CP027856.1\|AVP93798.1\|2494933_2495941_-\|DUF4401-domain-containing-protein	gnl\|CDD\|379574	pfam14351, DUF4401, Domain of unknown function (DUF4401). This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important.	7.05594e-32
CP027856.1\|AVP93793.1\|2485646_2487980_-\|recombinase-RecF	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	3.73254e-07
CP027856.1\|AVP93797.1\|2494439_2494937_-\|hypothetical-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	8.65831e-34
CP027856.1\|AVP93799.1\|2496034_2496973_-\|DUF2157-domain-containing-protein	gnl\|CDD\|378311	pfam09925, DUF2157, Predicted membrane protein (DUF2157). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.06129e-24
CP027856.1\|AVP95543.1\|2481533_2481782_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	8.54492e-24

>CP027856.1|AVP93795.1|2488600_2489833_-|hypothetical-protein
MSQEDDEKYPASAISSWSGFVYQGKIALYHSLKLIYDDDLDFELQLDSSDDFAIYKNGKLHTAHQVKAKISKSRSGYTSALEQSTLIEYDKIKGTTRYFHVSVQLNNTDDHKGASGETVKFYRYGEKYYCGLGEIEGLTKGLIKNICEKKSITVSDNLINFNYCLLSEKISTIAIHCHKLNQVDGVRETRAAYDNRIKASSLLADLLNENPYQNRDYYAVELKARLLTHLEERLDQALPTMSDATYERARRLCEHIRETPINELKTLCQMMKPSERFQDVQTNDIRRYTKLIQAISVEPIFNHLPHYLDSENRFYVPTALDVDENEECESDMIIEMKNNGDLLRLLFEYNHLIASKAEASFTFNTKFTNSDDFDNKPATEKLESNIIKSLCISVMTKEDAEGRLNDKTTH
>CP027856.1|AVP93794.1|2487954_2488620_-|hypothetical-protein
MIKQLIDEALVAHEFVSKLELDTTSFYVRESGSAIRFAIVHTLDGLPDPADLNNRINHLAPDEFLRNPSFKKNCDLICIHRLDVLAEFKGQEEEIFAIEEDPHFYKKYVLYYSIAEESALTDFTYDKLVSVIADKKEFLNYKENPLEASQYSFAAKTFIKLPFLELPSHPGNLVSLRQQAIEAVAQAGLSDTYATILQVTNANADQIIKEIIKNELENIQN
>CP027856.1|AVP93793.1|2485646_2487980_-|recombinase-RecF
MNWKISKIEVSSFKAFKHIYLDLGESALLTLDGPNGYGKTSIFDAIELLLTGQISRIQNLFSTLLSNRTKNYADNLFWNNRSGENDLCIKIEFTNDKRKLLLARHCPAAIFKKPANNRADKYENFKLYELPEFGSSDFTKINLRDNNFLDETFGKNFRENFSFLNYLEQGQNRLLHTRVDERKNKLGNLFNISDIEAEIESCNTIYSKLTKHINDPERKAKVESLTEEIAALRDTLQLEAGIVGYKKLSTTDVQPIWDKEVLFSTYSAADHAAYQESVRKIIALLPLKATIKTRVHNETIDAEIDRNEESLRSLAQFGKDLGKLDLLDAIKKGIDKLERSANIIKRGAAAISFEEARILPNWADGRLDWFESQIESRNNLREKSSANANVIAELEHLKRQLIDEHKKSYPNDQLCPLCGADWENHKSMVEAIEARTKQISESLSKDGKDLVNLIAAMDAELKLIDTHIQDSLKLLKPTFEQNLHAELTKIKLRLPAITQLMEKLQSENIQFTDSFTEIDDVVNERLENLKAILRNKKQVEADALALPEDWRDTTNSAFKDLQDFYIITAEDLNDKELYISIKANEAQNARLQTCISDLKLIEKETLAAQKAQIKIKTLRDTLKETEQRYTDQTISAIELIFHIYSGRLIQNYQRGLGLFIESREGTQLRFLTAEKSEHDAVMSMSSGQVSALSLAFFLSLNKVYARVPLILIDDPSQSLDEVNVASLTDLLRCELKHCQLIVSSHEDDISAYMRYRFDRAGLTTSSLNMQLLAKEAS
>CP027856.1|AVP93792.1|2484030_2485407_+|cysteine--tRNA-ligase
MLKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVSFDVVARYLRYAGYDLTYVRNITDVDDKIIKRAAETRVTCDDLTERLIGDMHQDFDALGMLRPDIEPRATQHIHEIIALVETLLEKEHAYVADNGDVMFIVESFADYGKLSGQDLEQLQAGARVDVVEAKRNPLDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHGGDYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLAHFDAETVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPAAAAAGGDEQVARFVDAMDDDFNTPEAYSALFDLVREINRQKAEDIAVAAGLGARLRELGAVLGILQQDPDAFLKGGEADDEVAEIEQLIAQRNQARADKNWAAADAARNRLTEMGIVLEDSAGKTSWRRA
>CP027856.1|AVP93791.1|2483329_2483827_-|peptidylprolyl-isomerase
MVTLHTNHGDITLTLNAEKAPETVANFLQYCRDGHYDNTIFHRVIDGFMIQGGGYAPGFEEKETRASIKNEAANGLSNKIGTIAMARTSEPHSASAQFFINVNNNDFLDFKSPTTQGFGYCVFGEVTAGMDVVNKIKGVKTGNYGRMHQDVPTEDVVITKVTLAE
>CP027856.1|AVP93790.1|2482626_2483340_-|DUF4269-domain-containing-protein
MLSDCRLLRTDITAAPAAVFPSAQATPANWRRLDYLAQGNPRQRSAHALLTAGCWDALERLCQDLALVSTVAIGLDRPGSDLDILCQHPDPARLAALLREQGWTASDKGHQVWLLEQTLTGPDQARWPVELYVTQAPLETLNGWRHLSLMAALLEHFGHDFYQAALRLRLEAGLKGEAAICRLLGLGGDPYAALLTLEGRDLAALHWQAPSQCDSSTPAGSPAPLCPEPIKSTHPTS
>CP027856.1|AVP93789.1|2481901_2482630_-|UDP-2,3-diacylglucosamine-diphosphatase
MSTLFISDIHLCAQRPDMTAALVRFLERDAPKADALYVLGDLFEFWIGDDDPNPLHSQVAEAFLALSRQDVPIYFIHGNRDFLLGKAFAKRAGMTLLGDPCVIDLYGERVLLSHGDLLCTLDEGYQKFRRITQQKWLRWLFLRLPLARRQIIACKMRGQSQMENAGKPQTIMDVTPAAVDALLRQHGCRLLIHGHTHRPAVHDFMLDGKPARRIVLGDWFEQGSVLSCSPQGQRLESRPLPE
>CP027856.1|AVP95543.1|2481533_2481782_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFLTWVVLGLIVGILAKWIMPGKDGGGFFMTVILGVIGAMVGGYVGTLLGMGTVTGFNLPSILIATVGALIVLFFYNKIRS
>CP027856.1|AVP95542.1|2480702_2481326_+|glutathione-S-transferase
MVLILGKGSSINVRKVLWTCAELDLPFEREEWGNGFQSTRSAEFLALNPNGMVPVMRDGDFTLWESNSIIRYLATRYGDGALYPAEARARARVDQWMDWQSSDLNRAWSYAFMSLVRHSPAHQDSQAMEASCAEWSRYMQILDRQLEATGGYVAGSRFSLADIPVGLSVNRWFHTPFERPPLAAVSDYYKRLSERPGFCLYGNNGMQ
>CP027856.1|AVP93788.1|2479466_2479676_-|hypothetical-protein
MTENARERLKMLITHSGKSLEECGHDGVLEELVEDSTLFDSDHNEILCVLEAWSGSSRRTQLLGFLFDE
>CP027856.1|AVP95544.1|2491239_2492268_+|diguanylate-cyclase
MQTLSERVTQARDLESLTRPLLEMLEAVTGLESTYLTQIDVEQGTQSIRYAKNANDVAGLQIPEGITVDWSDTLCRRAIDEGRMFTDNVAECWGDSDAARIMGIRTYLSSPVRTPSGSLYGTLCAASAERKPFVAGSEQLIGFFARLIAEHVEREQLLQQLQQANQELARQALSDPLTGLPNRRALMQELARLFSLSERAGHPVLIAFIDLDGFKQINDTHGHEAGDKLLVTMAQQLSAALRGGDLLARVGGDEFVVVGMGPHQGHETVEGAVQGFQRRLFEQSVFQVPIPSRVLDYPGASVGAVAIDPAHTSIDDALRQADARMYAVKRQRRALEGRAGCV
>CP027856.1|AVP93796.1|2492381_2492669_+|hypothetical-protein
MANRVIGQFRALAAKVATLFAELSEFQQRIWVVSIIKDAYTDTFIVNEGSFEEPMQWMHRKGYSAEMLARVDAMARSQVVQLELGGQCHRLMRVK
>CP027856.1|AVP95545.1|2492843_2493098_-|hypothetical-protein
MSISVCALLMACGGDKTTGKACLGANNDSLVEGMQDKCKAGDTVATKHPAYFCDFNYAVAYNSYNSAICVYSGALKPERTTEKS
>CP027856.1|AVP95546.1|2493503_2494214_-|hypothetical-protein
MGQASASPALGKLHYLTEEYKPYNFTGEDGTPSGFAIELLHQVWQKTGTPPQEISILPWARGYYLLTQKPNVVLFATARTEARDPLFKWACPIGYAEIVLMGLASHPLKLTRLEDAQQHTIGAVRADVGEQLLLNSGFDEQKIMTANRLPQALRMLTSGRVDLISSNKATLMDLIQAQQLDPAQFEVRWVLSSEQFCFAFSHPVDDALVKEFQHGLTQVLASSEFQRIQHKYFPVP
>CP027856.1|AVP93797.1|2494439_2494937_-|hypothetical-protein
MRRLGFLLTGLAILVGINVTVWRFEHAMSSGETVLLELAPVDPRSLMQGDYMRLSYALARQLGSPHQEGAATQTLVIRLDEQQVAQRVEGGTPDALAPDQRLLQARWQQGQWWIGPDAFFFEEGTAAQYEQARYGEFRLQPDGATLLVGLRDQALKPIGHTRPAW
>CP027856.1|AVP93798.1|2494933_2495941_-|DUF4401-domain-containing-protein
MSDLSPWERLRAAHLVEGDAPQDEQPHWSSRFLLGMVGWLAALFLLFFLFMAFESLIREANHALVMGTLLMAAALGLNRLARRSDLWDQFVLALALAADAWLLYGLIDQIDPHSAPLWLGLALLSLAIAALFEHWLVRLFHSFAAAILLTMGLACLGLQLLALPLVMAALTFCWLQAEHDPERHSLYESLTLGLALSLLVLGRLHHPLWDGGTSALDELGLSRLPLMLNPLLCAALLLGVMVKLKLPLLYGLPLVVISAIIPGMGAGALVLVLGFYAGSLGLMTLAGLLLLGFGSLYYYDLGLTLMTKSWLLLGSGALLLGTRQLLNILGKEIPS
>CP027856.1|AVP93799.1|2496034_2496973_-|DUF2157-domain-containing-protein
MLVTSRQTLLDWVRRGRLPRESLPAALALCDLPPAPVRWQWLFDRLLLWLGCLCLGAGLVFFVAFNWQALGRLSRLALLELPLLAMLLVLWRKPLADTPRQALLLAVALNIGALLALVGQTYQTGADPWQLFATWALLLLPLATLGRSPLLWTLCWLLGQLALVLYWRLGLIDLFFSFNEEALGWCLTLLNAALWGALILAPARLGLMPSWLPGLAAGLGVTLLALLALFDAASPWVWPAWLAWLGAAYLRWHHRFIAGLAMGCLSLIAVILAALGKWMEPDMNGFLLLSLIAIGLSVMASRWLQQQRRSHA
>CP027856.1|AVP93800.1|2497183_2497741_-|hypothetical-protein
MEALLTSTLSVAIAEIGDKTQLLALLLICRFRKPWPIIAGMLVATLLNHAGAAWIGEFISSWMDPKVMTWLVAGAFIAMAVWILVPDKMDDEESSLDKYGPFMATFVLFFIAEIGDKTQIATVLLAAKYDSLTQVITGTTLGMMLANVPVVLLGKLGADKLPLQGIRIACAILFVGLGASTLIFV
>CP027856.1|AVP93801.1|2498648_2499014_-|hypothetical-protein
MAAEHGAGRIRHGAILRPGGARKRGIRAKRLAMVLLIGIRRASEESGLTAALVAALADALLAAPGAAATSEPGLPCRRHANDNKAPSRISPRRGGLRQRAHKAAAGWDWIAGERRYQVSLR
>CP027856.1|AVP93802.1|2499245_2504636_+|hypothetical-protein
MANINGTNRNDIINATAGNDAINGGAGDDTINAGEGNNAVDGGSGNDSITAGAGNDVIDGGSGNDVINAGNGNNTVDGGSGNDNITTGSGNDSIDGESGNDTIFAGAGKDVILAGEGNDTVYGQDGDDVIYGEAGDDLLDGGDGNDYINGGDGRDIVYGGKGSDRLVGADQNDTLYGGSGDDVIGVDDAWRCNFSRENGQDVIYGDGKNSASGAWLSGADEVGSDLIYSGRGNDRIYGDSGLGGTVGGNDRIYAGGGNDAVFGEGGNDVIYGEDGDDLIDGGAGDDTLKGGDGRDTVYGGAGGDIISGADGRDLLYGGSGDDRIGNNDDNSWRHGYFSESGGDIIYGDGKDSASGLAGATGNDFIFSGQGNDTLYGDNGNNFAGAGAGGADTIYAGSGNDTAYGEGGDDALFGEKGNDSLYGGSGADEIAGGLGADTLSGGSGADTFIFTAELNQHSHRGWHGWGGWHGGYDHYDLQSWSDSTTMGMDTITDFLSIKDLGSNPLIAAGGPDKIDLVQLLGDDVDLKWGGTTPTAYGVWFKHEGGNTYVYADISGNPAVAELAFKLTGIHHLVVGDFLGVSSQGPIANADSNASDPLIEAGGAANAIPGDPSASGNVLANDTDPDLPFDTLTVSAVNGNSGNVGAVVAGTYGSLTLYANGSYSYALNNADSDTQGIAQGQIVNDVFNYTIMDSAGQTSTATLTLSITGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSV

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Crispr_ID: CP027856_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_17

2492596-2492729

Orphan

Consensus_repeat	Method
ATGCCATGGCCCGCTCCCAGGTTGTCCAGCTGGAGCTCGGCGGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_17

>merge|CP027856|17|2492596-2492729|CRISPRCasFinder
ATGCCATGGCCCGCTCCCAGGTTGTCCAGCTGGAGCTCGGCGGGCAGTGCCACCGTCTGATGCGGGTCAAATAGATGGCCCGGGCCCATGCCATGGCCCGCTCCCAGGTTGTCCAGCTGGAGCTCGGTGGGCAG

>CP027856|17|17|2492596-2492729|CRISPRCasFinder
ATGCCATGGCCCGCTCCCAGGTTGTCCAGCTGGAGCTCGGCGGGCAG	TGCCACCGTCTGATGCGGGTCAAATAGATGGCCCGGGCCC
ATGCCATGGCCCGCTCCCAGGTTGTCCAGCTGGAGCTCGGTGGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP93792.1\|2484030_2485407_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
CP027856.1\|AVP93791.1\|2483329_2483827_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182734
CP027856.1\|AVP93801.1\|2498648_2499014_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95546.1\|2493503_2494214_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270422
CP027856.1\|AVP95542.1\|2480702_2481326_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198289
CP027856.1\|AVP93789.1\|2481901_2482630_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
CP027856.1\|AVP93794.1\|2487954_2488620_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93802.1\|2499245_2504636_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
CP027856.1\|AVP93800.1\|2497183_2497741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225030
CP027856.1\|AVP93804.1\|2512324_2512699_-\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
CP027856.1\|AVP93798.1\|2494933_2495941_-\|DUF4401-domain-containing-protein	unknown	unknown	gnl\|CDD\|379574
CP027856.1\|AVP93795.1\|2488600_2489833_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93790.1\|2482626_2483340_-\|DUF4269-domain-containing-protein	unknown	unknown	gnl\|CDD\|379463
CP027856.1\|AVP95544.1\|2491239_2492268_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
CP027856.1\|AVP95545.1\|2492843_2493098_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP93793.1\|2485646_2487980_-\|recombinase-RecF	unknown	unknown	gnl\|CDD\|223496
CP027856.1\|AVP93797.1\|2494439_2494937_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379571
CP027856.1\|AVP93799.1\|2496034_2496973_-\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|378311
CP027856.1\|AVP93803.1\|2504632_2512087_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273899
CP027856.1\|AVP95543.1\|2481533_2481782_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP93792.1\|2484030_2485407_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
CP027856.1\|AVP93791.1\|2483329_2483827_-\|peptidylprolyl-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.34671e-90
CP027856.1\|AVP95546.1\|2493503_2494214_-\|hypothetical-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.31652e-27
CP027856.1\|AVP95542.1\|2480702_2481326_+\|glutathione-S-transferase	gnl\|CDD\|198289	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	5.17018e-49
CP027856.1\|AVP93789.1\|2481901_2482630_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	9.27671e-149
CP027856.1\|AVP93802.1\|2499245_2504636_+\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	4.86219e-20
CP027856.1\|AVP93800.1\|2497183_2497741_-\|hypothetical-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	3.60584e-51
CP027856.1\|AVP93804.1\|2512324_2512699_-\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	1.56359e-38
CP027856.1\|AVP93790.1\|2482626_2483340_-\|DUF4269-domain-containing-protein	gnl\|CDD\|379463	pfam14091, DUF4269, Domain of unknown function (DUF4269). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved KTE sequence motif.	1.07855e-43
CP027856.1\|AVP95544.1\|2491239_2492268_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.30062e-52
CP027856.1\|AVP93798.1\|2494933_2495941_-\|DUF4401-domain-containing-protein	gnl\|CDD\|379574	pfam14351, DUF4401, Domain of unknown function (DUF4401). This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important.	7.05594e-32
CP027856.1\|AVP93793.1\|2485646_2487980_-\|recombinase-RecF	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	3.73254e-07
CP027856.1\|AVP93797.1\|2494439_2494937_-\|hypothetical-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	8.65831e-34
CP027856.1\|AVP93799.1\|2496034_2496973_-\|DUF2157-domain-containing-protein	gnl\|CDD\|378311	pfam09925, DUF2157, Predicted membrane protein (DUF2157). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.06129e-24
CP027856.1\|AVP93803.1\|2504632_2512087_+\|hypothetical-protein	gnl\|CDD\|273899	TIGR01965, VCBS_repeat, VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.	7.37814e-20
CP027856.1\|AVP95543.1\|2481533_2481782_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	8.54492e-24

>CP027856.1|AVP95544.1|2491239_2492268_+|diguanylate-cyclase
MQTLSERVTQARDLESLTRPLLEMLEAVTGLESTYLTQIDVEQGTQSIRYAKNANDVAGLQIPEGITVDWSDTLCRRAIDEGRMFTDNVAECWGDSDAARIMGIRTYLSSPVRTPSGSLYGTLCAASAERKPFVAGSEQLIGFFARLIAEHVEREQLLQQLQQANQELARQALSDPLTGLPNRRALMQELARLFSLSERAGHPVLIAFIDLDGFKQINDTHGHEAGDKLLVTMAQQLSAALRGGDLLARVGGDEFVVVGMGPHQGHETVEGAVQGFQRRLFEQSVFQVPIPSRVLDYPGASVGAVAIDPAHTSIDDALRQADARMYAVKRQRRALEGRAGCV
>CP027856.1|AVP93795.1|2488600_2489833_-|hypothetical-protein
MSQEDDEKYPASAISSWSGFVYQGKIALYHSLKLIYDDDLDFELQLDSSDDFAIYKNGKLHTAHQVKAKISKSRSGYTSALEQSTLIEYDKIKGTTRYFHVSVQLNNTDDHKGASGETVKFYRYGEKYYCGLGEIEGLTKGLIKNICEKKSITVSDNLINFNYCLLSEKISTIAIHCHKLNQVDGVRETRAAYDNRIKASSLLADLLNENPYQNRDYYAVELKARLLTHLEERLDQALPTMSDATYERARRLCEHIRETPINELKTLCQMMKPSERFQDVQTNDIRRYTKLIQAISVEPIFNHLPHYLDSENRFYVPTALDVDENEECESDMIIEMKNNGDLLRLLFEYNHLIASKAEASFTFNTKFTNSDDFDNKPATEKLESNIIKSLCISVMTKEDAEGRLNDKTTH
>CP027856.1|AVP93794.1|2487954_2488620_-|hypothetical-protein
MIKQLIDEALVAHEFVSKLELDTTSFYVRESGSAIRFAIVHTLDGLPDPADLNNRINHLAPDEFLRNPSFKKNCDLICIHRLDVLAEFKGQEEEIFAIEEDPHFYKKYVLYYSIAEESALTDFTYDKLVSVIADKKEFLNYKENPLEASQYSFAAKTFIKLPFLELPSHPGNLVSLRQQAIEAVAQAGLSDTYATILQVTNANADQIIKEIIKNELENIQN
>CP027856.1|AVP93793.1|2485646_2487980_-|recombinase-RecF
MNWKISKIEVSSFKAFKHIYLDLGESALLTLDGPNGYGKTSIFDAIELLLTGQISRIQNLFSTLLSNRTKNYADNLFWNNRSGENDLCIKIEFTNDKRKLLLARHCPAAIFKKPANNRADKYENFKLYELPEFGSSDFTKINLRDNNFLDETFGKNFRENFSFLNYLEQGQNRLLHTRVDERKNKLGNLFNISDIEAEIESCNTIYSKLTKHINDPERKAKVESLTEEIAALRDTLQLEAGIVGYKKLSTTDVQPIWDKEVLFSTYSAADHAAYQESVRKIIALLPLKATIKTRVHNETIDAEIDRNEESLRSLAQFGKDLGKLDLLDAIKKGIDKLERSANIIKRGAAAISFEEARILPNWADGRLDWFESQIESRNNLREKSSANANVIAELEHLKRQLIDEHKKSYPNDQLCPLCGADWENHKSMVEAIEARTKQISESLSKDGKDLVNLIAAMDAELKLIDTHIQDSLKLLKPTFEQNLHAELTKIKLRLPAITQLMEKLQSENIQFTDSFTEIDDVVNERLENLKAILRNKKQVEADALALPEDWRDTTNSAFKDLQDFYIITAEDLNDKELYISIKANEAQNARLQTCISDLKLIEKETLAAQKAQIKIKTLRDTLKETEQRYTDQTISAIELIFHIYSGRLIQNYQRGLGLFIESREGTQLRFLTAEKSEHDAVMSMSSGQVSALSLAFFLSLNKVYARVPLILIDDPSQSLDEVNVASLTDLLRCELKHCQLIVSSHEDDISAYMRYRFDRAGLTTSSLNMQLLAKEAS
>CP027856.1|AVP93792.1|2484030_2485407_+|cysteine--tRNA-ligase
MLKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVSFDVVARYLRYAGYDLTYVRNITDVDDKIIKRAAETRVTCDDLTERLIGDMHQDFDALGMLRPDIEPRATQHIHEIIALVETLLEKEHAYVADNGDVMFIVESFADYGKLSGQDLEQLQAGARVDVVEAKRNPLDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHGGDYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLAHFDAETVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPAAAAAGGDEQVARFVDAMDDDFNTPEAYSALFDLVREINRQKAEDIAVAAGLGARLRELGAVLGILQQDPDAFLKGGEADDEVAEIEQLIAQRNQARADKNWAAADAARNRLTEMGIVLEDSAGKTSWRRA
>CP027856.1|AVP93791.1|2483329_2483827_-|peptidylprolyl-isomerase
MVTLHTNHGDITLTLNAEKAPETVANFLQYCRDGHYDNTIFHRVIDGFMIQGGGYAPGFEEKETRASIKNEAANGLSNKIGTIAMARTSEPHSASAQFFINVNNNDFLDFKSPTTQGFGYCVFGEVTAGMDVVNKIKGVKTGNYGRMHQDVPTEDVVITKVTLAE
>CP027856.1|AVP93790.1|2482626_2483340_-|DUF4269-domain-containing-protein
MLSDCRLLRTDITAAPAAVFPSAQATPANWRRLDYLAQGNPRQRSAHALLTAGCWDALERLCQDLALVSTVAIGLDRPGSDLDILCQHPDPARLAALLREQGWTASDKGHQVWLLEQTLTGPDQARWPVELYVTQAPLETLNGWRHLSLMAALLEHFGHDFYQAALRLRLEAGLKGEAAICRLLGLGGDPYAALLTLEGRDLAALHWQAPSQCDSSTPAGSPAPLCPEPIKSTHPTS
>CP027856.1|AVP93789.1|2481901_2482630_-|UDP-2,3-diacylglucosamine-diphosphatase
MSTLFISDIHLCAQRPDMTAALVRFLERDAPKADALYVLGDLFEFWIGDDDPNPLHSQVAEAFLALSRQDVPIYFIHGNRDFLLGKAFAKRAGMTLLGDPCVIDLYGERVLLSHGDLLCTLDEGYQKFRRITQQKWLRWLFLRLPLARRQIIACKMRGQSQMENAGKPQTIMDVTPAAVDALLRQHGCRLLIHGHTHRPAVHDFMLDGKPARRIVLGDWFEQGSVLSCSPQGQRLESRPLPE
>CP027856.1|AVP95543.1|2481533_2481782_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFLTWVVLGLIVGILAKWIMPGKDGGGFFMTVILGVIGAMVGGYVGTLLGMGTVTGFNLPSILIATVGALIVLFFYNKIRS
>CP027856.1|AVP95542.1|2480702_2481326_+|glutathione-S-transferase
MVLILGKGSSINVRKVLWTCAELDLPFEREEWGNGFQSTRSAEFLALNPNGMVPVMRDGDFTLWESNSIIRYLATRYGDGALYPAEARARARVDQWMDWQSSDLNRAWSYAFMSLVRHSPAHQDSQAMEASCAEWSRYMQILDRQLEATGGYVAGSRFSLADIPVGLSVNRWFHTPFERPPLAAVSDYYKRLSERPGFCLYGNNGMQ
>CP027856.1|AVP95545.1|2492843_2493098_-|hypothetical-protein
MSISVCALLMACGGDKTTGKACLGANNDSLVEGMQDKCKAGDTVATKHPAYFCDFNYAVAYNSYNSAICVYSGALKPERTTEKS
>CP027856.1|AVP95546.1|2493503_2494214_-|hypothetical-protein
MGQASASPALGKLHYLTEEYKPYNFTGEDGTPSGFAIELLHQVWQKTGTPPQEISILPWARGYYLLTQKPNVVLFATARTEARDPLFKWACPIGYAEIVLMGLASHPLKLTRLEDAQQHTIGAVRADVGEQLLLNSGFDEQKIMTANRLPQALRMLTSGRVDLISSNKATLMDLIQAQQLDPAQFEVRWVLSSEQFCFAFSHPVDDALVKEFQHGLTQVLASSEFQRIQHKYFPVP
>CP027856.1|AVP93797.1|2494439_2494937_-|hypothetical-protein
MRRLGFLLTGLAILVGINVTVWRFEHAMSSGETVLLELAPVDPRSLMQGDYMRLSYALARQLGSPHQEGAATQTLVIRLDEQQVAQRVEGGTPDALAPDQRLLQARWQQGQWWIGPDAFFFEEGTAAQYEQARYGEFRLQPDGATLLVGLRDQALKPIGHTRPAW
>CP027856.1|AVP93798.1|2494933_2495941_-|DUF4401-domain-containing-protein
MSDLSPWERLRAAHLVEGDAPQDEQPHWSSRFLLGMVGWLAALFLLFFLFMAFESLIREANHALVMGTLLMAAALGLNRLARRSDLWDQFVLALALAADAWLLYGLIDQIDPHSAPLWLGLALLSLAIAALFEHWLVRLFHSFAAAILLTMGLACLGLQLLALPLVMAALTFCWLQAEHDPERHSLYESLTLGLALSLLVLGRLHHPLWDGGTSALDELGLSRLPLMLNPLLCAALLLGVMVKLKLPLLYGLPLVVISAIIPGMGAGALVLVLGFYAGSLGLMTLAGLLLLGFGSLYYYDLGLTLMTKSWLLLGSGALLLGTRQLLNILGKEIPS
>CP027856.1|AVP93799.1|2496034_2496973_-|DUF2157-domain-containing-protein
MLVTSRQTLLDWVRRGRLPRESLPAALALCDLPPAPVRWQWLFDRLLLWLGCLCLGAGLVFFVAFNWQALGRLSRLALLELPLLAMLLVLWRKPLADTPRQALLLAVALNIGALLALVGQTYQTGADPWQLFATWALLLLPLATLGRSPLLWTLCWLLGQLALVLYWRLGLIDLFFSFNEEALGWCLTLLNAALWGALILAPARLGLMPSWLPGLAAGLGVTLLALLALFDAASPWVWPAWLAWLGAAYLRWHHRFIAGLAMGCLSLIAVILAALGKWMEPDMNGFLLLSLIAIGLSVMASRWLQQQRRSHA
>CP027856.1|AVP93800.1|2497183_2497741_-|hypothetical-protein
MEALLTSTLSVAIAEIGDKTQLLALLLICRFRKPWPIIAGMLVATLLNHAGAAWIGEFISSWMDPKVMTWLVAGAFIAMAVWILVPDKMDDEESSLDKYGPFMATFVLFFIAEIGDKTQIATVLLAAKYDSLTQVITGTTLGMMLANVPVVLLGKLGADKLPLQGIRIACAILFVGLGASTLIFV
>CP027856.1|AVP93801.1|2498648_2499014_-|hypothetical-protein
MAAEHGAGRIRHGAILRPGGARKRGIRAKRLAMVLLIGIRRASEESGLTAALVAALADALLAAPGAAATSEPGLPCRRHANDNKAPSRISPRRGGLRQRAHKAAAGWDWIAGERRYQVSLR
>CP027856.1|AVP93802.1|2499245_2504636_+|hypothetical-protein
MANINGTNRNDIINATAGNDAINGGAGDDTINAGEGNNAVDGGSGNDSITAGAGNDVIDGGSGNDVINAGNGNNTVDGGSGNDNITTGSGNDSIDGESGNDTIFAGAGKDVILAGEGNDTVYGQDGDDVIYGEAGDDLLDGGDGNDYINGGDGRDIVYGGKGSDRLVGADQNDTLYGGSGDDVIGVDDAWRCNFSRENGQDVIYGDGKNSASGAWLSGADEVGSDLIYSGRGNDRIYGDSGLGGTVGGNDRIYAGGGNDAVFGEGGNDVIYGEDGDDLIDGGAGDDTLKGGDGRDTVYGGAGGDIISGADGRDLLYGGSGDDRIGNNDDNSWRHGYFSESGGDIIYGDGKDSASGLAGATGNDFIFSGQGNDTLYGDNGNNFAGAGAGGADTIYAGSGNDTAYGEGGDDALFGEKGNDSLYGGSGADEIAGGLGADTLSGGSGADTFIFTAELNQHSHRGWHGWGGWHGGYDHYDLQSWSDSTTMGMDTITDFLSIKDLGSNPLIAAGGPDKIDLVQLLGDDVDLKWGGTTPTAYGVWFKHEGGNTYVYADISGNPAVAELAFKLTGIHHLVVGDFLGVSSQGPIANADSNASDPLIEAGGAANAIPGDPSASGNVLANDTDPDLPFDTLTVSAVNGNSGNVGAVVAGTYGSLTLYANGSYSYALNNADSDTQGIAQGQIVNDVFNYTIMDSAGQTSTATLTLSITGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSV
>CP027856.1|AVP93803.1|2504632_2512087_+|hypothetical-protein
MNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVATAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAATEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDRPVVSNVAAAAAEDGSTVNGSFVVSDADTSDLHTFAITSAPSAGSVVNNNDGTFTFDPGSDFQDLADGETRDVSFTYTATDDSGTGTDTSLSGTVTITVTGTNDDAVITGTNTAGVTEDTALVNGQLIASGDLNATDVDSSAAFVLQTNASSAYGSFSIDASGAWSYKADNTHAAIQQLSSGESLTDTIVVSTADGTTHNVVITINGTADASVIIAPDNLQYDPDSGDQTPFNRLMLADADTTGSVTVTITRTSGDSSFSVTGAPAGGTAVGGNNATITGTIANINAWLASNNLTHDSNGNDNDIFTIAINSGGNITNYVVSDVAFTSTGSGDTNNYAGVNVLAPTLNAGSGGDTVYTSWSHVGTAATNYTDDFVTGTDSIHLNFTAAQLQEILTNATTRDDLQTFLFNADGNDLNLDATSWNATVSPSGYFENATIGLANVWSTRDTATPSNNYLDINTTWKGVIAVNSGGTGEMLGLAGTASAEMIIANAAGTVTGLAGNDVLVAQNGGNTLDGGANSDLLLGGTGADVLIGGSGVDMLAGGTGGDTFQWGAGAVGVANADTIADYNFTEGDKLDLSSLLTGFQVGDNVAKFVKLSVSGENLLVSVDTTGSGNFASGQAYTLIGASAQGAVPVKVVFGGYDHILFVDSSTPSAPSAPELQAASDSGSSSTDNITNDSTPIVSGTGAEAGAIVTLYDSDGTTALGTSIAALDGSWSITSSALSSGSHTLTAKVTDWAGNASPASGSLVLTIDTTGATPVVSAVTADNGSSGTDEITNDSTLIISGTAEANSGIQVFRDGVSIGTTTANGSGNWSFDHTGTALAQGGYNFTAQATDVAGNVSAVSAALPVTVDTNAPTVSSIVNQTPATTVTNADSLTFRVIFGEAVANVSTGDFAVSGTTATVTGVSAVNASTYDVTISGGNLASLNGTVTLGFVGGQNITDIAGNALTATTPTGANNNSYTLDNTAPSSLSTRTLDLLATSDSGSSNTDNLTNDTTPTIRLSSMNGVVMSVGDVIQIIDTSSGNAVVGSYTVVAGDLGGGAWSGTTKDITLTALTDGAHGLKVRIVDVAGNVGTQSSATLTVAEDTTGPTVVISVSDGSGGNREATFTFSEVVTGFTSADVTVTNGTEGALSGGPTVWTQAISGAGTPAPAVTIANNSYTDLAGNLGSGAGPVTIAPAGIAGEPINLALSAPAGHTGDVAVKLTGVPTGWSISGGTDNGDGSWTVVTDDPSSLTVTTAADFAGAMVLPVSMSWTNADGSEGHATLLDNVEAYAPGSPIFALSQDDNLSGSSGADTFVFAQPIAHNQVYGFDVAADRLDLIGFGAGLDFASLQIAGDGQGNAVITLGPDSSITLRGVDAGALGAANFVFDLAPEMSNSGTMMLHDGAMLPLGGFLDNSGSVVLDSHGQTTRLEVLVEHLTLRGGGQVVLSDSPTNLIVGSTPQSRLVNENNTILGAGQLGGGQLMLANAGLILANGLHALLLDSGNNVIDNSGTLAATGAGGMTVTSALDNSGHLWANGGDLRLLGDVTGGGSATIDGDATLAFGGAARLGSVAFHGDGAGTLAVEADDAMSLGTILGLEQEDGLLLSDLIFGADTRLSYSASADGTGGLLTVSDGTQSAALRLLGHYSEGDFQLAGEADGRVKVGYGGAASGTLIGTMEDDDLQGGAGNDILVGRAGSDLLHGSGGADTFAWLQGDLEAGKVTRDYVADFNQGEGDRLDLSDLLDQDGSQTMDSLKSLLSMVQETDGIHLQVQDTTTHQVAQDIVLMNHTFGSLTGDESSTASQVIDYMLSNHRLDIDNP
>CP027856.1|AVP93804.1|2512324_2512699_-|stress-response-translation-initiation-inhibitor-YciH
MRKIKLRLANRQSIAMSHDNNSRLVYSTDGGMIKESAPTQSASPFPADGTVRIRRETKGRKGAGVITIHGVPADQQKTIATLLKKKCGTGGGLKEGIIEIQGDKRDLIKAELEKAGFQVKLVGG

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Crispr_ID: CP027856_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_18

3362623-3362776

Orphan

Consensus_repeat	Method
CGCCAGCATGTCGGCCTCGCGCCGCTCACCGCCTTCATGCTGTATCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_18

>merge|CP027856|18|3362623-3362776|CRISPRCasFinder
CGCCAGCATGTCGGCCTCGCGCCGCTCACCGCCTTCATGCTGTATCCGGTACCGCGTAAAGAACTCTATGCAAAACAAGACTGAGTACGCCCACAGCGGCACACTCGCCAGCATGTCGGCCTCGCGCTGCTCACCGCCTTCATGCTGTATCCGG

>CP027856|18|18|3362623-3362776|CRISPRCasFinder
CGCCAGCATGTCGGCCTCGCGCCGCTCACCGCCTTCATGCTGTATCCGG	TACCGCGTAAAGAACTCTATGCAAAACAAGACTGAGTACGCCCACAGCGGCACACT
CGCCAGCATGTCGGCCTCGCGCTGCTCACCGCCTTCATGCTGTATCCGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP94429.1\|3357464_3357701_-\|envelope-stress-response-membrane-protein-PspB	unknown	unknown	gnl\|CDD\|236526
CP027856.1\|AVP94440.1\|3371384_3372905_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
CP027856.1\|AVP94433.1\|3361641_3362601_+\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185065
CP027856.1\|AVP94432.1\|3359969_3361565_+\|peptide-ABC-transporter-substrate-binding-protein-SapA	unknown	unknown	gnl\|CDD\|173858
CP027856.1\|AVP94437.1\|3366211_3366970_-\|tRNA-(ms[2]io[6]A)-hydroxylase	unknown	unknown	gnl\|CDD\|114868
CP027856.1\|AVP94442.1\|3373601_3374897_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP027856.1\|AVP94425.1\|3353027_3353366_-\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
CP027856.1\|AVP94441.1\|3372923_3373415_-\|bacteriocin-production-protein	unknown	unknown	gnl\|CDD\|182773
CP027856.1\|AVP94427.1\|3355485_3356892_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367902
CP027856.1\|AVP94439.1\|3369848_3371279_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
CP027856.1\|AVP94428.1\|3356968_3357370_-\|envelope-stress-response-membrane-protein-PspC	unknown	unknown	gnl\|CDD\|132023
CP027856.1\|AVP94434.1\|3362843_3363737_+\|antimicrobial-peptide-ABC-transporter-permease-SapC	unknown	unknown	gnl\|CDD\|226640
CP027856.1\|AVP94426.1\|3354423_3355455_-\|TIGR01620-family-protein	unknown	unknown	gnl\|CDD\|235449
CP027856.1\|AVP94436.1\|3365280_3366066_+\|peptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226637
CP027856.1\|AVP94438.1\|3368362_3369817_+\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182081
CP027856.1\|AVP95605.1\|3367098_3368109_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
CP027856.1\|AVP94435.1\|3363947_3364946_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226639
CP027856.1\|AVP94431.1\|3358577_3359621_+\|phage-shock-protein-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|274371
CP027856.1\|AVP94430.1\|3357704_3358382_-\|phage-shock-protein-PspA	unknown	unknown	gnl\|CDD\|274372
CP027856.1\|AVP95604.1\|3353406_3354201_-\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP94429.1\|3357464_3357701_-\|envelope-stress-response-membrane-protein-PspB	gnl\|CDD\|236526	PRK09458, pspB, envelope stress response membrane protein PspB.	5.19923e-38
CP027856.1\|AVP94440.1\|3371384_3372905_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
CP027856.1\|AVP94433.1\|3361641_3362601_+\|peptide-ABC-transporter-permease	gnl\|CDD\|185065	PRK15110, PRK15110, peptide ABC transporter permease SapB.	1.28756e-112
CP027856.1\|AVP94432.1\|3359969_3361565_+\|peptide-ABC-transporter-substrate-binding-protein-SapA	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
CP027856.1\|AVP94437.1\|3366211_3366970_-\|tRNA-(ms[2]io[6]A)-hydroxylase	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	7.2066e-91
CP027856.1\|AVP94442.1\|3373601_3374897_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP027856.1\|AVP94425.1\|3353027_3353366_-\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	3.39587e-45
CP027856.1\|AVP94441.1\|3372923_3373415_-\|bacteriocin-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	1.62784e-78
CP027856.1\|AVP94427.1\|3355485_3356892_-\|hypothetical-protein	gnl\|CDD\|367902	pfam04317, DUF463, YcjX-like family, DUF463. These proteins possess a P-loop motif.	0
CP027856.1\|AVP94439.1\|3369848_3371279_+\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
CP027856.1\|AVP94428.1\|3356968_3357370_-\|envelope-stress-response-membrane-protein-PspC	gnl\|CDD\|132023	TIGR02978, Phage_shock_protein_C., phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	4.77531e-57
CP027856.1\|AVP94434.1\|3362843_3363737_+\|antimicrobial-peptide-ABC-transporter-permease-SapC	gnl\|CDD\|226640	COG4171, SapC, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.44465e-122
CP027856.1\|AVP94426.1\|3354423_3355455_-\|TIGR01620-family-protein	gnl\|CDD\|235449	PRK05415, PRK05415, hypothetical protein; Provisional.	1.02774e-116
CP027856.1\|AVP94436.1\|3365280_3366066_+\|peptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226637	COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	7.88035e-131
CP027856.1\|AVP94438.1\|3368362_3369817_+\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	gnl\|CDD\|182081	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional.	0
CP027856.1\|AVP95605.1\|3367098_3368109_-\|transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	2.90642e-108
CP027856.1\|AVP94435.1\|3363947_3364946_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226639	COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	0
CP027856.1\|AVP94431.1\|3358577_3359621_+\|phage-shock-protein-operon-transcriptional-activator	gnl\|CDD\|274371	TIGR02974, psp_operon_transcriptional_activator, psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions].	0
CP027856.1\|AVP94430.1\|3357704_3358382_-\|phage-shock-protein-PspA	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	8.38211e-87
CP027856.1\|AVP95604.1\|3353406_3354201_-\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	3.94044e-147

>CP027856.1|AVP94433.1|3361641_3362601_+|peptide-ABC-transporter-permease
MFFYILRRITLLVITLLVLTMGAYLLEFRLIGQVLDFWHGYPDFLQRIAAGDFGLSSVSGLPVLDEIRHYFPATLTLCLAAFAISLLVGIPLGTLAALYQGRGLDLSIMAAGLIGYAVPVFWLALLMVMFFSLDLGWLPSSGQISLLYDVPSITGIAIVDVLMSQEPWREAALHDALRHLVLPSLVLAVVPTTEVIRHVRSSLIDVMKQNYIKAAASRGLSRRQIVWRHGLKNALPPVLPLLGLQLGSVLTSAMITEVVFDWPGIGRWLVSSIALQDYAAIRGAFLVVASFVIFISVSTELLTTIMYPARRKELYAKQD
>CP027856.1|AVP94432.1|3359969_3361565_+|peptide-ABC-transporter-substrate-binding-protein-SapA
MLTPLLLGLLVLVTGCQKQDDASRTGLIYCADGAPRSFNPQLANSEATLDASARPLYDRLLEVNANTLSIEGGLATHWRSSEDGLSYTLTLRKGVTFHRTPWFNPTRHFNADDVLFTYHRLLDEHHPFHSISGGEYPYFHSLGLSSLIKRVYKKGPHEVVFELNRPDASFLATLASDYAIVLSAEYGEQMDKAGTPELLDSRPIGTGPFSFKEYRHNEFVRYLRHPGYWGGEAKIEQLIYDITPKSSKRLAKLLTGECDVMSTPSASQLSVIDKDSHLNLSVQSGMNVAFLALNTRKAPFNKVQVRQALASAINVQNLLQAVYFETGQPAASLLPPLSWGYNPSLTQRKPDLKLARQLLRDAGYPQGFEMQVLVQPGARPYNPDGLKTAQLMRSDLAKIGVKLKIVQQAWPVIETRLAHGQYDSLLSGWIADNADPDNFFRQLLSCAAVERGNNYSRWCSPAFDQLLDDAVTTPQLAFRLRNYYYAQSLLNEQLPLIPLAHALRTQVSRSDIQGLTLMPFGGTTFNQAYRE
>CP027856.1|AVP94431.1|3358577_3359621_+|phage-shock-protein-operon-transcriptional-activator
MTTATESLLGESNAFLEIIEQASRLAPLRKPVLIIGERGTGKELIAHRLHYLSDRWDQSFVTINCATLSESLLETELFGHEAGSFTGAAKRHQGRFERADGGTLFLDELATTSARVQEKLLRVIEYGEFERVGGAKALKVDVRLVCATNEDLPQLAARGQFRHDLLDRLAFDVITLPPLRERREDILMLAEHFAHGMTRELGYPLFAGFSRKATQLLQDYPWPGNVRELKNVVERSLYRQGNPQLPLSELVINPFDSPWRPRTGSPSPVTTEATSASGPQAMSLPLDLKGAVAEYEINLLKQAMQQSQYNQRKAAQLLTLSYHQFRGMLRKYQLLEGDDNNGNMDND
>CP027856.1|AVP94430.1|3357704_3358382_-|phage-shock-protein-PspA
MSIFSRLADIINSNLTSLLDKAEDPQKMVRLIIQEMEDELVKERSNLARFLANQKEIGRQVSRHQERVNEWQAKAELALTKGREDLARAALIEKNKQSELAEALYREQQAVDSGIDKLGDEIRQLEAKLEDARARQKAMAIRSEAASSRLNVQSQVARGDSQAVVSKFERMERRIDEMEARADLGQSDKALAQQFAELEADDQISRELEAMRQKLGQSDTASKGE
>CP027856.1|AVP94429.1|3357464_3357701_-|envelope-stress-response-membrane-protein-PspB
MEDILGILATPLIVFMVIVAPIWLVLHYRAKGRIGAGLADNEREQLQGLLVRAEKMQERVGALESILDAEVPGWRNKV
>CP027856.1|AVP94428.1|3356968_3357370_-|envelope-stress-response-membrane-protein-PspC
MSASNNSRNLYRDPQKGKIAGVCAGLADYFGVETWIVRLLAITGLIFAGFITFTAYIAAWFLLDKKPVTLYGEQEADFAEVRMKARSWQAGVTPHQALGRIAQELDTLEPRLQRIEKLVTSKEFTLQREFSKL
>CP027856.1|AVP94427.1|3355485_3356892_-|hypothetical-protein
MIRNKIEQKWSVLQHKAFEVVNRARDRHIRLAVTGLSRSGKTAFITALVNQLEHAAIDGRLPLWDAQRQGRILGARRVPQQNAHIPTFPYERGLDALFGEPPAWPEPTRGVAEVRLEIRYRTRHPVRRHLGEISTLYVDLVDYPGEWLLDLPLLDLSYEQWSEQVANQLRRPELQALAADWLTPGWQAEQAFEERPACQLAERYTDYLHACKRELGLHLIQPGRFVLPGEYAGAPLLQFVPWVWEKPASEPADGSLYATFKQRFEQYKQHLVQGFYEQHFAGFDRQIVLVDCLAPLNAGAASFGDMQQAIARIMESFAYGKSNWWRRLFSPRIDKLLFVASKADHVTPEQHGPLVSLLQHLVSSGRGQARFEGIETECLALAAIKATEVGKGQANGREFPAIRGTSLAGEPLLLFPGEVPPQIPPAQWWQSQGFDFQAFRPMPMSAHQALPHIRLDAALEFLLGDHLE
>CP027856.1|AVP94426.1|3354423_3355455_-|TIGR01620-family-protein
MNDQTTQKVPLQGKVILEPTLSVASEAPPPAPAQRLEEESFERLEELDEFTEVAPALTVRPRRRHRLLGWGLGAVGLLSLGQFGAFLYDQFLTTPLWGGAWLLASGLVAVGTAGVVGREWLRLRTLKRRQDVRSRAEDLLAHQGVGQGQAFCEALAEKSGDKGREGYQTWLGQLDESHSDREVLTLYSQLVLGERDKLAQARVAKWSGEAAVLVALSPLATVDMMLMLWRNLRMIEDIADVYAIELGYWSRIRLIRQVFRNMLYAGATELVTEVGMDLLGAELTAKLSARAAQGVGAGLLTARLGLRTIEACRPLPWCADEKPRLGELRKRLVGQLAGYLRKS
>CP027856.1|AVP95604.1|3353406_3354201_-|phenylalanine-4-monooxygenase
MASRYTAHQPDEQGCIHYSEEEQGTWQILIARQLAALEGKACDAYRAGLERLALPLDRIPQLGEINAALSPTTGWSVAAVPALISFDRFFALLADRQFPVATFIRRRDELDYLQEPDIFHEIFGHCAMLTNPAFAHFTHLYGQLGLNASKEERVYLARLYWFTVEFGLLQEGEGLRIYGGGILSSIGETAYALSGKPVLQPFDLLEVLRTPYRIDIMQPVYFVLPSLDCLYRLGPQQIMAAVAEARRLGLRPPRFAPASGRQAS
>CP027856.1|AVP94425.1|3353027_3353366_-|4a-hydroxytetrahydrobiopterin-dehydratase
MSELANQRCEACRADAPRVSEQELSELMHAIPDWQPLVVNGELQLRREFAFRNFKEALAFTNRLGELAEAEFHHPAILLEWGKVTVSWWTHKIGGLHRNDFIMAARTDELMK
>CP027856.1|AVP94434.1|3362843_3363737_+|antimicrobial-peptide-ABC-transporter-permease-SapC
MHDKSNIYPELKILSPLEQTWASYRRNPLAMGGLWCFGLLLLITLVGPLVVPYGIDDQHSGRLLLAPSWASTGNIDYFLGTDDLGRDILSRLVVGARLTFGNALLVVVIALLVGSAIGILGGMSKGVKSSVLHHLLDTLLSIPSLLLAIIVVAILGPGLFNTLIAITLALIPPFIRATYNAVHAEMQKEYIIASRLDGSPPLRIMRLAILPNIVETLVTQTTRTLSAAILDISAVGFLGLGAQSPQPEWGAMLADSSDLIYLAPWTVTLPGMAILFSVLVTNLVGEGIREALKEGND
>CP027856.1|AVP94435.1|3363947_3364946_+|ABC-transporter-ATP-binding-protein
MPLLDIRNLTIEIDTPQGKVKAVDRVSLTLNEGEIRGLVGESGSGKSLVAKVIVGIQKDNWTVRADRMRFNDMDLLTMAPKERRRIMGREIAMIFQDPISCLDPSEEIGTQLEEAIPTSAFAGKFWQRFQWRKKRAIALLHRVGVKDHRKVMRAYPHELSDGMCQKVMIAMAIANQPRLLVADEPTSAMESTTHSQILRLLDKMNKLGNTTILIISNDIAAIANLTDTINIMYCGQMVEVGTRDQILESPRHPYTDALLKSIPDFDKLVRHKSRLETLPGVIPPLQHLPIGCRLGPRCPYAQKQCVQTPLMSKVKGHQFSCHFPLNMEEPKK
>CP027856.1|AVP94436.1|3365280_3366066_+|peptide-ABC-transporter-ATP-binding-protein
MIEPALLQVRGLCKTYQNRTGLFRRQAVEAIKPLSFDLGVGQTLAIVGEAGSGKSTLARILAGMIEPSGGEIAIEGQPLVHGDYQTRCKLLRMIFQDPNTSLNRKIRVGQILETPLRLNTALSEEERREKVVQTLRMVGMLADHALFYPQMLSAGQQQRVGLARALILNPKIVVADEALSTLDISVRSQIINLLLEMQETMGLSYVLVANDLGIVSHISDEVLVMHEGRVVERGKTLRVFADPQHDVTRRLIQNYNNEYRR
>CP027856.1|AVP94437.1|3366211_3366970_-|tRNA-(ms[2]io[6]A)-hydroxylase
MDDLLAPVRQFLHCETPDEWVEMARDPAQLPTLLIDHANCENKAALTAHSLVRRYCLPKEKRHLLPKLEFYRELDAIPEKAEILGKRTMGESDRSVFAELERNPLLFPMVRLIQEELHHFEQVLEIMQARGIPYGPVTASRYARSLLAHVRTYEPAAVVDKMIIGAYIEARSCERFAKIAPHLDEELGRFYVSLLRSEARHYQDYLALAEQYAGEDISERVAYFGRIEAELICSPDPQFRFHSGLPVRSDSC
>CP027856.1|AVP95605.1|3367098_3368109_-|transcriptional-regulator
MTTMLEVAKRAGVSKATVSRVLSGNGYTSQETRDRVFQAIEESGYRPNLLARQLATKNTQTLGLVVTNTLYHGVYFSELLSHAARLTEDRGRQLILADGKHSAEEERQAIQYLLDSRCDGVIIYPRYLSVEEMDEIIEQHSQPIMVLNRRLRRHPAHCVYSDQQAAAAAVVDRLIGMGHRDIAFITGSADSPTGMERLAGYKQALVRHEIPLRDELIAQGKWTPACGAAGVSTLLARGVSFSALIASNDDMAIGAIKQLYESGVSVPEQVSVVGFDDIALAPYVIPSLASVKMPVTEMIQETISRLITMVEEGEAGELPSFSGKLIRRDSLKRLLE
>CP027856.1|AVP94438.1|3368362_3369817_+|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC
MSKNYAALAGKVITALGGTGNIVAVTHCMTRLRFVLQDPTLVDSPTLKATAGVLGVVSSDNQCQVIIGNMVSHAYREVLAQLPEGTQGDVPAAKPGFSLRRMGAAILDALIGTMSPLIPAIIGGSMLKLLAMVLEMTGVLEKGSSTLTILTVAGDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIDLMARAAEGEQVTFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGTAISGLVYTVHDYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWRTKNPELRQTALAAAASAIMAGISEPALYGVALRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIAWVFAVMALSVVLSFVLTLLMGFEDIPVEVPGESAAPQPVAASQTQATAGA
>CP027856.1|AVP94439.1|3369848_3371279_+|6-phospho-beta-glucosidase
MSLARFPQGFLWGGALAANQAEGAHREGGKGLTTVDMIPHGANRMAVKLGQEQRFTLRDDEFYPSHEAIDFYHRYKEDIALMAEMGFTVFRTSIAWSRLYPKGDEAEPNPEGIAFYRALFEECRKYNIEPLVTLCHFDVPMHLVVEYGSWRNRQMVDFFTRYARTCFEAFDGLVKYWLTFNEINILLHSPFSGAGLVFDEREDREQVKYQAAHHELVASALATRIAHEVNPHNQVGCMLAGGSFYPYSCKPEDVWVALQKERENLLFIDVQARGAYPAYAVSLFREKGIQLVKAPEDDDILKHSVDFVSFSYYASRCASADMNAGNTSAANVVKSLRNPHIQQSQWGWGIDPLGLRITMNSLYDRYQKPLFLVENGLGAIDEINADGEIEDDYRIDYLRAHISAMGDAIADGVPLLGYTSWGCIDLVSASTGEMSKRYGFVHVDRDDAGQGTLARRRKKSFWWYRQVIASNGEDLA
>CP027856.1|AVP94440.1|3371384_3372905_-|amidophosphoribosyltransferase
MCGIVGIVGTTPVNQALYDALTVLQHRGQDAAGIVTIDSGNFRQRKANGLVKDVFEVRHMQRLKGHIGIGHVRYPTAGSSSAAEAQPFYVNSPYGMVLAHNGNLTNAKDLKEQQFKVARRHINTTSDSEVLLNVLAHELDLCDKMALRPEDIFSAVRKVHQQIRGAYAVVSLVIGHGLIGFRDPNGIRPLILGRRVDDQGQVEYMLASESVALDAIGFETVRDVAPGEAIYITEQGQLFSEQCAENPQMSSCIFEYVYFARPDSCIDKVSVYAARLNMGRKLGKKIAREWEDLDVDVVIPIPETSCDVALEIAHTLGLPYRQGFVKNRYIGRTFIMPGQTQRKKSVRRKLNAISSEFKGKKVLLVDDSIVRGTTSEQIIQMAREAGAAKVYFASAAPEIRFPNVYGIDMPTANELIAHGREVEEVCKLIGADGLIFQDLEDLEEAVREINPELRHFETSVFNGHYVTSDVDQGYLDHLNALRSDDNKAVREWQEGTSNLEIFNEGS
>CP027856.1|AVP94441.1|3372923_3373415_-|bacteriocin-production-protein
MVWIDYAIIGIVGFSALISLVRGFLKEAMSLVTWFVAFFIASHFYPDLAIYFTSFSDAMVRNGLAIAALFVATLILGSVVNYVVGLLVEKTGLSGTDRVLGVCFGAIRGVLIVSALLFFMDTFTSLSQSDWWVASRLVPEFKPVIQWFFGFMLNSSSFLQQVQ
>CP027856.1|AVP94442.1|3373601_3374897_-|serine--tRNA-ligase
MLDPKYLRSDIEEAAARLAARGYTLDVAAVNALEEKRKDLQSRTQELQAERNARSKSIGEAARRGEDVAPLKAEVTKINDELETSKVALEALLADIKAISDAIPNLPSDSTPVGRDENDNVIVRHWGTPREFSFPVRDHIDLGEAAKGVDFKNGVKLSGARFVVMKGQIARLHRALAQFMLDLHTLQHGYTECYVPYLVNPDSLYGTGQLPKFSQDLFNTGIEGEGEDEGKVRKFSLIPTSEVPLTNMARDEIFDEQELPIKMTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQLVHPEKSWDALEEMVGHAEKVLQLLELPYRVMALCTGDMGFCAAKTYDLEVWLPAQNTYREISSVSNCTDFQARRMQARVRVDGKPQLLHTLNGSGLAVGRTLVAVIENYQQEDGRIAIPAALQSYMGGLTHIG

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Crispr_ID: CP027856_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_20

4097430-4097537

Orphan

Consensus_repeat	Method
ATCCCTGAGCACTGCCCGGCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_20

>merge|CP027856|20|4097430-4097537|CRISPRCasFinder
ATCCCTGAGCACTGCCCGGCGTGAACCATACGCTGGAGAGGGCACAGCCCTGTTTGCCCAGTCGGAGGCCTACCCATGCCTGTATCCCTGAGCCCTGCCCGGCGTGAA

>CP027856|20|20|4097430-4097537|CRISPRCasFinder
ATCCCTGAGCACTGCCCGGCGTGAA	CCATACGCTGGAGAGGGCACAGCCCTGTTTGCCCAGTCGGAGGCCTACCCATGCCTGT
ATCCCTGAGCCCTGCCCGGCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95046.1\|4101949_4104571_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
CP027856.1\|AVP95036.1\|4088909_4090592_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173874
CP027856.1\|AVP95047.1\|4104931_4106269_+\|N-succinylarginine-dihydrolase	unknown	unknown	gnl\|CDD\|237332
CP027856.1\|AVP95044.1\|4099653_4101207_+\|aerotaxis-receptor-Aer	unknown	unknown	gnl\|CDD\|223910
CP027856.1\|AVP95039.1\|4092605_4093628_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
CP027856.1\|AVP95050.1\|4108431_4109316_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP027856.1\|AVP95041.1\|4094734_4096450_+\|chitobiase	unknown	unknown	gnl\|CDD\|199881
CP027856.1\|AVP95048.1\|4106356_4107364_-\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
CP027856.1\|AVP95052.1\|4110725_4111868_+\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|275146
CP027856.1\|AVP95049.1\|4107588_4108344_+\|YciK-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236357
CP027856.1\|AVP95045.1\|4101284_4101641_+\|cysteine-methyltransferase	unknown	unknown	gnl\|CDD\|226219
CP027856.1\|AVP95037.1\|4090709_4091693_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
CP027856.1\|AVP95032.1\|4085006_4085324_-\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
CP027856.1\|AVP95035.1\|4087022_4088351_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838
CP027856.1\|AVP95040.1\|4093639_4094632_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226967
CP027856.1\|AVP95033.1\|4085450_4085801_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95051.1\|4109390_4110563_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184973
CP027856.1\|AVP95034.1\|4085950_4086727_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211400
CP027856.1\|AVP95038.1\|4091694_4092609_+\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
CP027856.1\|AVP95043.1\|4097587_4099453_+\|beta-hexosaminidase	unknown	unknown	gnl\|CDD\|119333

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95046.1\|4101949_4104571_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
CP027856.1\|AVP95036.1\|4088909_4090592_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173874	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of a cellulose-binding protein from the hyperthermophilic bacterium Thermotoga maritima (TmCBP) and its closest related proteins. TmCBP binds a variety of lengths of beta-1,4-linked glucose oligomers, ranging from two sugar rings (cellobiose) to five (cellopentose). TmCBP is structurally homologous to domains I and III of the ATP-binding cassette (ABC)-type oligopeptide-binding proteins and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporters and chemotaxis systems. Members of the PBP2 superfamily function in uptake of a variety of metabolites in bacteria such as amino acids, carbohydrate, ions, and polyamines. Ligands are then transported across the cytoplasmic membrane energized by ATP hydrolysis or electrochemical ion gradient. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.15073e-171
CP027856.1\|AVP95047.1\|4104931_4106269_+\|N-succinylarginine-dihydrolase	gnl\|CDD\|237332	PRK13281, PRK13281, N-succinylarginine dihydrolase.	0
CP027856.1\|AVP95044.1\|4099653_4101207_+\|aerotaxis-receptor-Aer	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.71468e-59
CP027856.1\|AVP95039.1\|4092605_4093628_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.67181e-153
CP027856.1\|AVP95050.1\|4108431_4109316_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.27973e-31
CP027856.1\|AVP95041.1\|4094734_4096450_+\|chitobiase	gnl\|CDD\|199881	cd02850, E_set_Cellulase_N, N-terminal Early set domain associated with the catalytic domain of cellulase. E or "early" set domains are associated with the catalytic domain of cellulases at the N-terminal end. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually categorized into either exoglucanases, which sequentially release terminal sugar units from the cellulose chain, or endoglucanases, which also attack the chain internally. The N-terminal domain of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others.	5.85815e-17
CP027856.1\|AVP95048.1\|4106356_4107364_-\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
CP027856.1\|AVP95052.1\|4110725_4111868_+\|aspartate-aminotransferase	gnl\|CDD\|275146	TIGR04350, aminotransferase_class_I_and_II, putative C-S lyase. Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A).	6.61813e-160
CP027856.1\|AVP95049.1\|4107588_4108344_+\|YciK-family-oxidoreductase	gnl\|CDD\|236357	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional.	2.34765e-170
CP027856.1\|AVP95045.1\|4101284_4101641_+\|cysteine-methyltransferase	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	8.55161e-26
CP027856.1\|AVP95037.1\|4090709_4091693_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.1614e-99
CP027856.1\|AVP95032.1\|4085006_4085324_-\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	1.96659e-35
CP027856.1\|AVP95035.1\|4087022_4088351_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
CP027856.1\|AVP95040.1\|4093639_4094632_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	2.87326e-106
CP027856.1\|AVP95051.1\|4109390_4110563_-\|MFS-transporter	gnl\|CDD\|184973	PRK15011, PRK15011, sugar efflux transporter SetB.	9.97231e-151
CP027856.1\|AVP95034.1\|4085950_4086727_-\|hypothetical-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	3.66789e-09
CP027856.1\|AVP95038.1\|4091694_4092609_+\|peptide-ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.91829e-73
CP027856.1\|AVP95043.1\|4097587_4099453_+\|beta-hexosaminidase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0

>CP027856.1|AVP95041.1|4094734_4096450_+|chitobiase
MELLINQVGYDCDGHKIALLQTDADVEISGLVRLRRLHDDRLLLEVPLQAAGQVPGWQGRAYWRADFSAFKESGHYRLEAITAQGIVRSTRFAIGQDLLTSRCLSDVIHYFKGQRASGAFDRADRSARLFGTDQRKDVHGGWFDASGDMSKYLSHLSYANYLNPQQTPLVVWSLLKSRALLATRRDIDGLNLCKRLGDEGLHGADFLCRMQDESGFFYMTLFDKWSKDPEQRELCAYATQQGLKSANWQAGFRQGGGMAIAALARAAREQSGGDFDTSHYAEAARRGYLHLREHNLAYLDDGLENIIDDYCALLAAVELTQTLGRDWLGEARERAGRLCARQFPHPELGHYWSANEDGSRPYYHAAEAGLPVLALLEYLGVEPDQDRRAQVSAVVQQALAAELALAARAGNPFALARQYVKGVDEAPRISFFMPHHNESGYWWQGENARLASLAAMAFAAARHFPQQSPLLMTFGQRQLDWILGQNPFNACMLAGHGIHNPSYTAGYPNALGGICNGITSGFDDEAEVAFIPEEYRDRLDQNWRWGEQWIPHAAWFALAISWQSTPEARHD
>CP027856.1|AVP95040.1|4093639_4094632_+|ABC-transporter-ATP-binding-protein
MQIAQTDAPIIEVQHLYKDFAVNSNAIKSGKMRALSDITFNLHRGRALAVVGESGSGKSTIAKIIAKMYKLSNGRILYRGRDLEEFNKGTALLDYRQSVQMVWQDPFGSLNPTHTIYHHIARPLLLHSKVLDKKDLPDMVYALLEKVGLTPAKATAAKYPHQLSGGQRQRVNIARNLAVEAEVVLADEPTSMLDVSIRIGILNLMEQMKNELGVSMLYITHDIATARYVAEDLAVMYVGHMVEWGEVDEILHHPQHPYTQLLISAVPDPEKSIHAELEGGRKGEIPLWTPESRGCPFAGRCHQAMPRCKESLPPVTKLADNHFVRCYLHE
>CP027856.1|AVP95039.1|4092605_4093628_+|ABC-transporter-ATP-binding-protein
MSSQQPLLSVRQLCVDYITESGDVRAVNSVSFDIAPGEVFGLAGESGCGKSTVAFSVARLHKPPAYISGGEILFKGENILGFDDERLRSYRWRQASVVFQSAMNALNPVLRMEEQFCDVLLAHNPGMTRYEAIKRAQELLEIVDIHPSRLKDYPHQFSGGMRQRLVIAIAMALNPELLIMDEPTTALDVVVQREILQKVYALKAKFNFSILFITHDLSLMVEFCDRIGIMYAGELVEVAPAKAILTAPLHPYTKGLGNSFPPLHGPKTVLEGIPGTPLNLLEVPVGCRFQARCGKVHDRCRQEYTALAEIRPGQQAACHLYDSAEEQLDHPIYLDKAAGC
>CP027856.1|AVP95038.1|4091694_4092609_+|peptide-ABC-transporter-permease
MRMPTILKILLGNKKAAFGLAIVVTFVLMALFAPLLASNEPTKRVARPHQPPSVELVMGSNRMGHDLWAQFTSGARISLMVGFGAGLLVCALAIGIGITAGYFGGVVDECLTFLMNVVLVIPNLPLLLVLASFIGEASPTVIALIIGFTSWAYGARVIRAQTLALREKEFVIAAEVLGEPAWRIILVEILPNLISIIGVSFIGSIIYAIVTEATLEFLGLGDPTVVSWGIMLYNAQTSSAILVGAWWEILAPCFAIATLGAGLAMLNFAIDEIANPQLRSHKGLRRWKQLAAPVPPIAAQEKTA
>CP027856.1|AVP95037.1|4090709_4091693_+|ABC-transporter-permease
MGFILRRFSFYLVAFLVAATINFLLPRAMPGDPVSVMFARAGAMMEPAALEALKATFGFVDGPITTQFLAYVKSVFTWDLGTSVRYYPQPVADVLGRAIGWTLFLVGTSTILSFSIGSIVGIFAAWYRGGRMDSILSPLTLVMQAIPPVVVSLLALFLFGVSLGWLPIGYAYSPEIPADFGWEHIKSIMLHAIMPVGTLAMVQVGGFLITMRNNMINLLGEDYITMAKAKGLSSNRVIFNYGARNAVLPSVTALSMALGFVIGGSLITEVIFNYPGLGLTLYQGILARDYPLIQGQLLIMTITMLSFNFLADVLYVFLDPRLRTGGK
>CP027856.1|AVP95036.1|4088909_4090592_+|peptide-ABC-transporter-substrate-binding-protein
MLAKVSKIATSVMLGTLMLGAAGTAMAAENKTVLTLVAQQETAWVKNFNPFLQAGLLHTTRHFIYEPLVIFNDMQGGKPVYRLATNYAFSDDLKSVTFDLREGVKWSDGEAFTADDILFSFNLVKANKALDERSIWTQIKGVEKLGEHKVKFDLAEVNTNVVNDLVLVPIVPEHQWKSVKDPVAFTNDKPVGTGPFTEVDNFSAQLYTQCRNPHYWDNANLAIDCLRMPQMATNDQVLAAVMKGDVDWFGSFVPDIERLYVGNDPKNNKYWFPASGTVAFNVNFQSKNPGNNEAFNDINFRRAFSMAMDRQSMVDIAGYGYPTVNEYPSGLGKAFASWDNPDVEKKYGKYNKFDLEGAKALLKEAGYKDCDGDKFLDTPSCKKIEFKVLVPNGWTDWVNTVQIGVEGLQALGLNAKTSTPEATVWTENLITGDFDVALQGYFAGANPHKYFETAFHSRNMGERGNRFAAPRYKDPELDKLIDDFTQTADAAKQKEIMFAIQERVGANQTIIPVFNNPTWYEYSTKRFNGWFSADNPVAKPQVHPDTPERLLHVLSLKPNS
>CP027856.1|AVP95035.1|4087022_4088351_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MSNTKQAPKVGFVSLGCPKNLVDSERILTQLRTEGYDVVPSYDDAELVVVNTCGFIDSAVQESLEAIGEALAENGKVIVTGCLGAKENQIREIHPKVLEITGPHAYEEVLGHVHKYVAKPTHNPFTSLVPAHGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEELAKLDIWVRLHYVYPYPHVDDVIPLMRDGKVLPYLDIPLQHASPRILKLMKRPGTVERTLERIQKWREICPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYSPVEGAKANELPDPVPEDVQEERFQRFMELQQQVSVRKLARKVGQEMTVLIDEVDEEGATGRSFADAPEIDGLVYLNGETDLKPGDLVKVRIDEADEYDLWASLVQ
>CP027856.1|AVP95034.1|4085950_4086727_-|hypothetical-protein
MKSRSWLIAAILALASGPSHADWAKLKEAASELGTAVSDTSKEAWQGITDFSKATWESVSSWGADAYNKAGAWSEESAATGKEWLTAADKKLDTMLEPKTPAEARTALDTMADTALVRLFNEQPSAKLLFDQAYGYAVFDSRKFSLMVHTNQGSGVAINRKTGKHTYMKMFGAGLAAGMGGKFYQQVVLFEDKARFDAFVNKGWEATSEVGAVAGKESAELTAKYNGGMAIYQIGEKGLLLDANISGSKYWLDDDLNK
>CP027856.1|AVP95033.1|4085450_4085801_-|hypothetical-protein
MTQASESAVDWRREWERQSIYLRLQEGSPMVLWVNGDEVEPLTEGVAEEVAFGWGRADEGTMALALAIVARLVAVGLVAPAQATEKAHFLHDEVLVKLPADEHRDLHLGYLKLVLG
>CP027856.1|AVP95032.1|4085006_4085324_-|flagellar-hook-basal-body-complex-protein-FliE
MEISASSLMQEMQALKVEAGATPLTQPGRPVNSDFGQMLQQALDNVNELQGSANDLRTRFDMGDKSVDLSEVMIAGQKSSIAFEATVQVRNKMVDAYKTIMNMPV
>CP027856.1|AVP95043.1|4097587_4099453_+|beta-hexosaminidase
MSAPLIHTQIDRRDGEDVWFRFTLSQLPASPWKLHFCLARHIDPQSVEGGSLARQSGSYKVLVPHEGVSELRFCCRNTPIKRYSDLPQGFFLSLTDEGAQPQLQPLVQAGQELGLPPSTAAAPDLPEVEPANGIVPQPAQLRLPEGNFRLAERAHVSGPVSLAPLLAHFNELTGLALTQDHDAEIHLVEAPLPEEAYQLVITTEEIRIRAAGEAGWRHGLVTLAQWALQHGESLPCLEVEDAPRFGFRGIFLDCARHFHSIATLKRLLKQMSFYKFNRFHWHLTDDEGWRLEIKAFPRLTEVAAWRGHGLAVGPQLSGGPDPYGGYYTQSEMRELVTYAAGLGITIIPEIDIPGHCHAAIKALPELLREEADSSRYLSVQYFDDNVLNPALPGTYRFLEAVIDEVCALFPGTQVHMGGDEVPTGVWTDSPACQQLMAEQGYTDCRELQGHLLRHCQQYLAARGKQMLGWEEILHGDKVSRDATIFAWTSFQAGLDAATAGYPVVMAPAQSLYLDLAWSPDIHEPGLYWAGTLNLEQVYLCDPAPADFHANDNILGVLSPLWSELITSRDRLDYMLFPRMLATAEVAWSDPARKAWDHFAARLPGQLQILDQLQVRYRVPQR
>CP027856.1|AVP95044.1|4099653_4101207_+|aerotaxis-receptor-Aer
MARKHVQIQDSEVEFPADVQLVSTTDLRGVITYANPAFCRIAGYHVDELVGHNHNLVRHPDMPKAAFADLWDRLKEGNPWRGMVKNRCKDGRYYWVDAYVTPIYENGKISGYQSVRCKPEPQLKQVAAQAYQALLKAEQGGASKLPSLHSARPLLLGLLMLALFGWAAFSQGALTVLLMLLPLLAVAGTYWRELISLPRYLKRLGQQYDSLTRLVYSGDAPGAIADFHLKMLQARIRTVLGRVNDATHPLQTLATDLQDSSHQAFLDINEQDAQTQQMAAAMTQMASTAHEIARNIQDTNSQVTEARSSCQHTVQQLDQTEQQMELLARQAEHAFHSAVELANESERIGSVMGEIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLSTRTHKATEQIQGSIRQIQQTLGRWQGMMQDNLAQTRECALMTRQGSGNLHLVLGEIDQVTEFSTQIAAAAEQQQAVVEEISRNIHQISQYSRANSQKIQAVDNSSQELLKRASELRGLSQTFG
>CP027856.1|AVP95045.1|4101284_4101641_+|cysteine-methyltransferase
MMMTPPPSPLNKVARIEAILALIPAGRVVSYGQVADLAGLPGRARLVGKVLRETDKTLPWHRVLGAGGTISLPKGSAGFDEQIGRLQEEGVPVIKGRVRMREWQWQPDLAELLFLIPF
>CP027856.1|AVP95046.1|4101949_4104571_-|type-I-DNA-topoisomerase
MGKSLVIVESPAKAKTINKYLGKDYVVKSSVGHVRDLPTSGSASTEPKKPVIRGIKLSESEKAAKDRNALFSRMGINPTAGWQANYQILPGKEKVVSELQSLAEKADTIYLATDLDREGEAIAWHLREIIGGDDSRYKRVVFNEITKTAIQEAFAQPSDLNIHRVNAQQARRFLDRVVGYMVSPLLWKKLARGLSAGRVQSVAVRLIVDKEREIKAFVPVEFWDLNADLLTGDKADLRMEVVSRNGVDFKPVTQAETFAAVAALEGVDYKVVNREDKPTGSKPSAPFITSTLQQAASTRLSFGVKKTMMMAQRLYEAGYITYMRTDSTNLSKEAVEAVREYIGEQYGAAYLPAEPTLYGSKAGAQEAHEAIRPSNVLVTAEMLEGMEPDAMRLYDLIWRQFVACQMTPAQYDSSTLTVKAGEFELKARGRTLRFAGWTKALPPMGRKGEDSQLPAVTVGEILKLVKLDPRQHFTKPPARFTEAALVRELEKRGIGRPSTYASIISTIVDRGYVRVESRRFFAEKMGEIVTDRLVENFVELMNYEFTAKMEDKLDGIAEGSLEWKKVLDAFYAEFTQELEQADKPAEEGGMRANQMVLTDIDCPDCGRKMGIRTATTGVFLGCSGYALPPKERCKKTINLVSADEFVSATDGDEAETEALRAKHRCGVCGTAMDAYIIDDSRKLHVCGRNPDCDGYEIEQGQFKLKGYEGPSIECDRCGSEMQLKNGRFGKYMGCTNETCKNTRKILKNGDIAPPKEDPVPLPELKCTQSDAHFVLRDGAAGLFLAASNFPKSRETRAPLVEELKRFRDRLSPKHQYLADAPASDPDGNASVVRFSRKSKEQYVMTEVNGKATGWTAHYDNGKWQESLAKAKKS
>CP027856.1|AVP95047.1|4104931_4106269_+|N-succinylarginine-dihydrolase
MKHFEVNFDGLVGPTHNYAGLSYGNVASQSNAKEASNPKEAAKQGLRKMKALTELGMTQGVLAPQERPDLATLRRLGFTGNDASVLAQAAKQAPAVLAACYSASSMWTANAATVSPSADTQDGRIHFTPANLTNKFHRSLEPEVTGRILRAVFNNDRHFSHHQHLPQNDHFGDEGAANHTRLCRAYGEAGVELFVYGRSAFDVSRPAPKRYPARQTLEASQAIARLHGLGEESAVFIQQNPDVIDQGVFHNDVIAVGNQNVLFFHQQAFLHTEAALAEVRTKFGEGVLHFIEVPTNEVSVQDAVKSYLFNTQILTLPSGEMAIIAPTECRDNPAVSAYLAKLVTLGTPIKGVHFMDVKQSMRNGGGPACLRLRVAMNDAELAAVNPACLINDSQFARLDNWVERHYRDSLSLDDLRDPSLVLETRTALDELTQILKLGSVYPFQR
>CP027856.1|AVP95048.1|4106356_4107364_-|protease-SohB
MAFLTEYGLFLAKTLTLLLAIGAVVLMVVSSRQPRARKGELVVTDLSRELEQGRHQLQSALAGKAERKQMDKARKAEEKARAKSEDERSRLFVLDFHGSMDAREVASLREEVSAVIGVARPGDEVLLRLESGGGVVHGYGLAASQLQRLRDKDITLTVAIDKVAASGGYMMACVADKILAAPFAIVGSIGVIAQLPNFNKLLKKHDIEFEMHTAGQYKRTITMFGENDDLGREKFREELGAIHERFKGFVAEHRPGLDIDKVTTGEHWLASQAKQLGLVDALCTSDDYLLAQASQHKVVGISYRKPKSLTQRLGQQGAQALEGALGRLWQQSPWR
>CP027856.1|AVP95049.1|4107588_4108344_+|YciK-family-oxidoreductase
MLDYQAPRDLLKDKVILVTGAGDGIGREAALTYAAHGATVVLLGRTSAKLEAVYDQIEAAGHPLPAIVPVDLKGATAAHYRGMAETFAQQFGRLDGVLFNAGLLGTLSPFEHIQEKEWDEVMQVNVKSEFLLTQALLPLIRQTAKEHGEASIVYTSSSVGRKGRAYWGTYAISKFAVEGMMEVLADELENTGVRVNSLNPGGTRTKMRASAFPAEDPQLLKTPADLMPLYLYLMGPDSRGKTGQTFVAQPK
>CP027856.1|AVP95050.1|4108431_4109316_+|LysR-family-transcriptional-regulator
MFRPKSTFEQWRIFQAVVDCGGYAQAAEALNKSQSSLNHAVAKLQQSLGLALLEVRGRKAVLTPAGEIFLKRARQLSQQVEELENLANNLERQWEPQINLYVSALQPRERLYRALAHFHPRSRGCRINLHERIHCHFNALQVGDLMLSEHLPHDRTGLPLDEVCLLPLCAAEHPLAGQEDPITAELLASHNQISLHPPIHRSVDWNDADDTGWKATHYHEVLSMVRLGLGYAWVPGHLVREELASGALVQLDLAGGSERYLYTYLLTPSTDALGPAAELLLRCLRNEYQADSGK
>CP027856.1|AVP95051.1|4109390_4110563_-|MFS-transporter
MSLLSAARKRPDPVSLSFLAVTFMTGVAVALQVPTLSLFLAEEVQVRPFLVGLFYTVNAVIGILISQWLGHRSDNGGDRKQLILRCCLAGIVLSLLFAWNRQYWLLVSLGVVLASLTATASPQLFALAREYADSRNKRADMFSSVLRAQFSLAWVIGPPAAFALAIGYGFEVMYLASALAYLVCALVVWRWLPSLPLPSSHGGGERVSSWRDPSVRALFIASTLMWTCNSMYLINMPLYITRELGLEEKLAGILMGTAAALEIPFMLLAGYYTRRFGKRPMMLLAVLAGVGFYAGLVTLSSQGALIALQLLNAIFIGIVAGIGMSYFQDLMPGRAGVATTLFANSIRTGSIMAGAIAGTVAEIWSFHGVFMVATALALAALAACWRVPNV
>CP027856.1|AVP95052.1|4110725_4111868_+|aspartate-aminotransferase
MFDFDREIDRSGTMSLKWDKYKGQDVLPMWVADTDFASPPAVIEALTARVAHGIFGYSRPSPRLIELIITRLQQRYGWTISPEWLVFLPGVVPGLNLACKAWSQHGRGIITPKPVYYPFLQAPGFNDRPLLTVPMMEEAGRWVLDLEELERQAPSADLLLLCNPQNPGGTVFTREELLAIDAIAERHNLVVCSDEIHCDLLLDKDARHIPYGALSPSAAERSAVMMAPSKTFNIAGLCCSFAVIPNARLRLKLQQAMRGISADVNLLGFVAAEAAYEGGEQWLSEQLDYLRANLALIEQAVARWPGVKLARNQATYLAWIDVSALGLDDPVAFFEQAGVGLSPGAQFGDGQFVRLNFGCTRARLTHALARMEKAILQRSA

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Crispr_ID: CP027856_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_22

4271038-4271138

Orphan

Consensus_repeat	Method
ATCCGTTTCGGTGGCCTGAATGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_22

>merge|CP027856|22|4271038-4271138|CRISPRCasFinder
ATCCGTTTCGGTGGCCTGAATGTCGCTGGCAAGTGACAATCAAGGGATGACAAGGAGTGCCATGCTCCTCCATCCATCCGTTTCGGTGGCTTGAATGTCGC

>CP027856|22|22|4271038-4271138|CRISPRCasFinder
ATCCGTTTCGGTGGCCTGAATGTCGC	TGGCAAGTGACAATCAAGGGATGACAAGGAGTGCCATGCTCCTCCATCC
ATCCGTTTCGGTGGCTTGAATGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95191.1\|4279976_4280936_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
CP027856.1\|AVP95660.1\|4262426_4262720_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95178.1\|4265801_4266212_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|234795
CP027856.1\|AVP95177.1\|4264824_4265541_-\|disulfide-bond-formation-protein-DsbC	unknown	unknown	gnl\|CDD\|182802
CP027856.1\|AVP95187.1\|4275505_4275859_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224470
CP027856.1\|AVP95174.1\|4259963_4260929_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
CP027856.1\|AVP95188.1\|4275862_4277074_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
CP027856.1\|AVP95175.1\|4261649_4262249_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP027856.1\|AVP95181.1\|4268332_4269733_+\|peptidase-C69	unknown	unknown	gnl\|CDD\|223389
CP027856.1\|AVP95180.1\|4267390_4267909_+\|flavodoxin-FldB	unknown	unknown	gnl\|CDD\|183471
CP027856.1\|AVP95189.1\|4277225_4279367_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
CP027856.1\|AVP95183.1\|4271441_4271819_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
CP027856.1\|AVP95190.1\|4279547_4279817_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
CP027856.1\|AVP95659.1\|4261124_4261601_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP027856.1\|AVP95661.1\|4274953_4275328_-\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
CP027856.1\|AVP95184.1\|4271885_4272812_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182294
CP027856.1\|AVP95185.1\|4273267_4274629_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237969
CP027856.1\|AVP95186.1\|4274630_4274879_+\|ferredoxin	unknown	unknown	gnl\|CDD\|235941
CP027856.1\|AVP95179.1\|4266281_4267193_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
CP027856.1\|AVP95176.1\|4263128_4264859_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95191.1\|4279976_4280936_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
CP027856.1\|AVP95178.1\|4265801_4266212_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|234795	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL.	8.31228e-72
CP027856.1\|AVP95177.1\|4264824_4265541_-\|disulfide-bond-formation-protein-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	1.38885e-27
CP027856.1\|AVP95187.1\|4275505_4275859_+\|hypothetical-protein	gnl\|CDD\|224470	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism].	3.33326e-41
CP027856.1\|AVP95174.1\|4259963_4260929_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
CP027856.1\|AVP95188.1\|4275862_4277074_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.50007e-67
CP027856.1\|AVP95175.1\|4261649_4262249_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	2.56744e-113
CP027856.1\|AVP95181.1\|4268332_4269733_+\|peptidase-C69	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	5.40442e-122
CP027856.1\|AVP95180.1\|4267390_4267909_+\|flavodoxin-FldB	gnl\|CDD\|183471	PRK12359, PRK12359, flavodoxin FldB; Provisional.	8.27097e-121
CP027856.1\|AVP95189.1\|4277225_4279367_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
CP027856.1\|AVP95183.1\|4271441_4271819_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	3.51954e-29
CP027856.1\|AVP95190.1\|4279547_4279817_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.62223e-53
CP027856.1\|AVP95659.1\|4261124_4261601_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.39652e-13
CP027856.1\|AVP95661.1\|4274953_4275328_-\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	2.48206e-25
CP027856.1\|AVP95184.1\|4271885_4272812_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	1.9553e-145
CP027856.1\|AVP95185.1\|4273267_4274629_+\|U32-family-peptidase	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	0
CP027856.1\|AVP95186.1\|4274630_4274879_+\|ferredoxin	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	2.32871e-07
CP027856.1\|AVP95179.1\|4266281_4267193_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	3.64104e-178
CP027856.1\|AVP95176.1\|4263128_4264859_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0

>CP027856.1|AVP95181.1|4268332_4269733_+|peptidase-C69
MTSFSLLAPTIARDVLDHALRLGADFAELFVERKRRSQLSLLSSQIENISGGLDFGIGVRLCYGHKVLYGYTNLASRDELLRIVSLLAAKDRRDPVVTATAFDFTPITDRNPVALPLSVDKQLEQKIAYLHAMDAVARAESGKVSQFSGNVLGWEQEVEIFNSEGLQVSDRRHYNRIMAQTIAVEGSEQSVGYEAPGALMGWEHAERIDPRELALTATRQALVKLGAAPCPSGTLPVIMESGFGGVIFHEACGHLLETTSVAKKASVFHDKMGQLIANPAVSAVDEGLQSNAWGSINVDDEGMATQHTQLIKDGVLTGFLVDRMGAIKTGHARTGSGRRESYKFAPTSRMRNTYIEPGSHSLDEMIATVEHGIYAKKMGGGSVQPGTGEFNFNVQEAYLIEHGKITRPLKSATLIGTGPQVLKEISMVGRNLALAAGMCGSVSGSVPTSVGQPALKVDKILVGGNA
>CP027856.1|AVP95180.1|4267390_4267909_+|flavodoxin-FldB
MKIGLFYGSTTCYTEMAAEKIRALIGPELVDLHNIKDVPLARMQEYDILILGISTWDFGELQEDWESRWEDIKDVPLEGRIIALFGMGDQLGYGEWYQDALGLLHDQLVPKGVRLVGYWPNEGYEFDASKALIDDGRHFVGLALDDANQYDQTESRIEQWVDQILSEIHELL
>CP027856.1|AVP95179.1|4266281_4267193_-|site-specific-tyrosine-recombinase-XerD
MTKPAPAVHNHPLIEPFLDALWLERGLSDNTVSSYRTDLEKFALWLDGQGGSLLLAGMDDIQHYLAWRVDKQFAASSTARFLSALRRFYQYLNREKLRGDDPTVLLEGPKLPKKLPSDLSEAEVDALLTAPLVDDPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIRGELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHPRA
>CP027856.1|AVP95178.1|4265801_4266212_+|large-conductance-mechanosensitive-channel-protein-MscL
MSLIKEFKAFAARGNVIDMAVGIIIGAAFGKIVSSFVGDVIMPPIGLILGGVDFSDLAVTLKAAEGDIPAVVIAYGKFIQTIIDFLIIAFAIFMGLKAVNTLQKKQAEEAPAPAGPTKDQELLTEIRDLLKSQQGK
>CP027856.1|AVP95177.1|4264824_4265541_-|disulfide-bond-formation-protein-DsbC
MRHLLLGMMLLCTFAASAGMDPQLLKQTIGQRLGVQVFLVDETPVPGLYLLGTAQGLLYSDARGNYVLQGSMLDLAHDMQNLTRLSQQQQRRLALAQVGEARLWLKAPNERYRVTLFTDLGCRRCHAVLDDLPQLQARGVSVQLLPLAAPFAELAETQALWCDPALLGELSLSDRLPAAGCNEILAHHIGLSQWLGIKASPSWVLPNGDLVRGYQSPEQLLKILDHINAPANPSSSAS
>CP027856.1|AVP95176.1|4263128_4264859_-|single-stranded-DNA-specific-exonuclease-RecJ
MPLQIRRRPRVDDSHLPATLHPLLRQIFASRGVEDPALLERSANQLLPPQRLFGMEQAVPLLADALTAQQRILIVGDFDCDGATSSALCVLALRAMGGHHVDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVDNGISSIAGVAAAKAAGMRVLVTDHHLPGQDLPDADAIVNPNQRGCDFPSKSLAGVGVAFYLMAALNTHLRQSGWYERQGIRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRAGRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSLGVACLLSDDLNLARQLAAEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHRDEWHQGVVGLVASKVKEKYYRPVIAFAQSSDTELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTLPKANIAAFGRAFEAVIAELVTPELLTGVLLTDGELLPDELSLELAELIRASGPWGQAFPEPLFDGEFVLVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLKRWPDASVKRVRLVYRLDVNEWRGNRSVQLLVEHLEAAGL
>CP027856.1|AVP95660.1|4262426_4262720_-|hypothetical-protein
MQLHEPPAPGLADNLSLPPASQWRLSFEQGRRLEGARDPDLYQMLLAWFQHEILGLLCGLLFFLPLIYLRQWPNCLGHLHQRQLLCHHLQFRFCQGD
>CP027856.1|AVP95175.1|4261649_4262249_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MDYYVNLFIQSIFVENLALAFFLGMCTFLAVSKNINTAFGLGMTVLVVMVIAIPLNNLIYRHILRPDSTFLGEFDLSFLDFIIYIGVLAALVQVMEMVLDKHFPALHQALGIYLPLLTVHCAIFGGVMFMAQRDYDFIESVVYGAGSGLGWLLAIVAIAGLRQKMKYSDVPEGLRGIGITFIVAGLMSLGFMSFSGISL
>CP027856.1|AVP95659.1|4261124_4261601_+|GNAT-family-N-acetyltransferase
MDEAAFPAYRDYFIDDYAQDLAGNHGLTLTYARQQAEASLLQHLPQGAATPGQSLLCIIPVSDNVGSAVAPTAGIAGYLWHSIDSAAHTTFIYDFYTLPTHRGLGYGKAAMAVLEADLKCLGVSQIKLRVAYDNPRARALYEEIGFHITGYNMAKTLA
>CP027856.1|AVP95174.1|4259963_4260929_+|lipoyl-synthase
MSKPVRMEPGVKLRDGDKMALIPVKFMPDPNEEVLRKPDWMRIKLPPSSQKIEHIKSTLRKNKLHSVCEEASCPNLAECFNHGTATFMIMGAICTRRCPFCDVAHGRPLALDPEEPKKLALTIKEMGLKYVVITSVDRDDLRDGGAQHFADCIKQIREHSPQTRIEILTPDFRGRMEQALEVFRETPPDVFNHNLETAPRMYRVARPGADYKWSLELLRRIKEMHPHVPTKSGVMMGLGETNEEIVQVLTDLREHGVNMLTLGQYLQPSRHHLPVKRYVPPAEFDELKDVAMGLGFSHAACGPFVRSSYHADLQAKGEEVK
>CP027856.1|AVP95183.1|4271441_4271819_+|VOC-family-protein
MDNTLVWADIPTRDLDRAMDFYSALLDVQVTPIQEEEMRFAMLRYDGSNAAACLGPMDKYHQPGGAGPLIYLSLGDRLQEAEQLVPRLGGRVLEPLHSIGSGHGSRVIIEDTEGNWLALYAPPAP
>CP027856.1|AVP95184.1|4271885_4272812_-|LysM-peptidoglycan-binding-domain-containing-protein
MNPLRIAASALFCTLTLVSQQAAAVEYALPAANSRLIGENQEYVVPADNRPLEQIAADFQLGLTNIMEANPGVDPYLPTPGSKLTIPHQLILPNAPREGIVINVAEMRLYYYPKGKNVVQVLPIGIGQLGVNTPENWITKVERKRANPTWTPTENIRRRYAAQGKTLPAVWPAGPDNPMGLHALYIGNLYAIHGTNATFGIGLRVSSGCVRLRADDIKYLFDNVPVGTRVQFVNQPVKTTVEPDGGRYMEVHEPLSRTEEEFNSTASVPLPMTPATTRFIAHMDSDSNVVKQVLEQRTGMPTRLNPEA
>CP027856.1|AVP95185.1|4273267_4274629_+|U32-family-peptidase
MFRPELLSPAGTLKNMRYAYAYGADAVYAGQPRYSLRVRNNEFDHENLQLGINEAHALGKQFYVVANIQPHNSKLKTFIRDMRPVVDMKPDALIMSDPGLIMMMREAFPEMPIHLSVQANAVNWATVKFWHQMGLTRAILSRELSLDEIEEIRMQVPEMELEVFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNSCRWEYKVHEGKEDDVGQIVHRQEPIAVRPDNTLGLGKPSDALVLLEESNRPGEYMTAFEDEHGTYIMNSKDLRAVEHVERLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAVAGRPFDPTLMGTLENLAHRGYTEGFLRRHNHSEYQNYDYGYSVSDTQQFVGEITGRQGDMVEVEVKNKFLVGNSLELMTPQGNVSFNLEQMQNRKGELIDTAPGNGHVVYVPVPKEIDINYGILLRNLGDRQDTRQPHSAA
>CP027856.1|AVP95186.1|4274630_4274879_+|ferredoxin
MALLITDKCINCDMCDPECPNQAISLGDKIYEIDPDRCTECVGHYEKPTCISVCPIDCIIWDPAHLETEEQLMDKFVLMHRQ
>CP027856.1|AVP95661.1|4274953_4275328_-|DUF1090-domain-containing-protein
MGLLLLAGQAYGSENVGCKARHQAVTEQLTFARAHDNAQQVAGLEQALRNIEAHCTDAGLVEEQQEKVAKQKQEVEERLSDLQSARVSGKPDKIAKKQAKLEESQAELLEAQRELEALQKLVKP
>CP027856.1|AVP95187.1|4275505_4275859_+|hypothetical-protein
MKQEILIIANGAPYGSESLFNALRLGIALNEQEGVILKIFLMSDAVGAALAGQSPAEGYNLRQMLEILLAQGTVIRLCKSCTDARGISSLPLIEGIEIGTLPLLAQWTLAADKVLTF
>CP027856.1|AVP95188.1|4275862_4277074_-|MFS-transporter
MSWAYLRQFPPLVWIVILGTFMVRTTFFMVWPFLSILLYRDYGLSATLIGLILGATAALSTLVSFYGGWLSDKWGRRNILLFGCLVSALSVALLGLSHQVIWLAMGVIGSGLSYGLIDSPGKALMADSLAEPKARELALHLRYFLLNLGAAIGPLLGVSYGLSARQETFLLLSASYLLLGFIFFVGFRLAACQPSHAAGPGMRAVLRVLWQDRGFLLLTMANLLLMLVYAQFESPLIQYLTRAGTPEVERLIGWLVSTNALTIVILQFPLLHLTANWSIKRRLQLGVAFFLSAQLQFALGDTAIWWHWIVAVILLSVGECILFPLLNVLVDQMAPEHLKGSYFGAASMSGLGIAIGALLGGWILANWGGSWLYGCMALLCLAILMLYGLSTRTLRTALVRAEP
>CP027856.1|AVP95189.1|4277225_4279367_-|polyribonucleotide-nucleotidyltransferase
MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIVAMIGASAALAISGIPFGGPIAAARVGYMNGQYVLNPTTTELPQSDLDLVVAGTANAVLMVESEAAILSEEVMLGAVVYGHEQMQVVINAINEFAADVGTQPWDWTPPAVNEALKAKVAELATAELGEAYRITEKAVRYAAIGAIKSRVVEQVIASGVEEDAKKIGEEFHSLESRIVRGRVVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELAGHRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLGDMDFKVAGTTQGITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAEISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADFLKIGDVVKVKVLEVDRQGRVRLSIKEANAPTEAAAPVADVAVAEEPAAE
>CP027856.1|AVP95190.1|4279547_4279817_-|30S-ribosomal-protein-S15
MSLNAEIKASIVADNARCANDTGSPEVQVALLTAQINHLQGHFKEHSKDHHGRRGLLRMVSQRRKLLDYLKRKDVQRYAALIAKLGLRR
>CP027856.1|AVP95191.1|4279976_4280936_-|tRNA-pseudouridine(55)-synthase-TruB
MSRRRRFKGRDVHGILLLDKPTGLTSNDVLQKVKRIYNAAKAGHTGALDPLATGMLPICLGEATKFSQYLLEADKRYEVTAKLGERTNTSDSDGEVVSTRPVNVAVGTLIEALDQFRGPIMQVPSMYSALKHNGRPLYEYAREGITIEREARPITVFELKLLSFEGDEVRLEVHCSKGTYIRSLVDDLGEVLGCGAHVTQLRRTQVASYPYDRMLTLDQLECIFEQAKAESIPPREQLDPLLLPMDTAVASLPEVNMLTAVAAYVNQGQAVQVAGAPQSGQVRMTVGPEREFIGVGEIDDEGRVAPKRLVRYHDDNNEE

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Crispr_ID: CP027856_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_23

4402484-4402614

Orphan

Consensus_repeat	Method
CGCCGCTCCCGTCCATTCAGGTGAAGAGGCGACCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027856_23

>merge|CP027856|23|4402484-4402614|CRISPRCasFinder
CGCCGCTCCCGTCCATTCAGGTGAAGAGGCGACCTGGCCCCCTCCCTGTTGCTGAAGTGCTGCTTCAACTCCCGTACCGACAACAAGATGCTCATCGCCGCCCCCGTCCATTCAGGTGAAGAGGCGACCTG

>CP027856|23|23|4402484-4402614|CRISPRCasFinder
CGCCGCTCCCGTCCATTCAGGTGAAGAGGCGACCTG	GCCCCCTCCCTGTTGCTGAAGTGCTGCTTCAACTCCCGTACCGACAACAAGATGCTCAT
CGCCGCCCCCGTCCATTCAGGTGAAGAGGCGACCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95292.1\|4399411_4400863_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|349885
CP027856.1\|AVP95669.1\|4405642_4406680_-\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
CP027856.1\|AVP95289.1\|4396561_4397830_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
CP027856.1\|AVP95668.1\|4402669_4403728_-\|peptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
CP027856.1\|AVP95299.1\|4413314_4413842_+\|biopolymer-transporter-ExbB	unknown	unknown	gnl\|CDD\|376576
CP027856.1\|AVP95297.1\|4411169_4411934_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378764
CP027856.1\|AVP95301.1\|4414332_4414968_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|367555
CP027856.1\|AVP95287.1\|4394870_4395974_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
CP027856.1\|AVP95296.1\|4408459_4411066_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP027856.1\|AVP95294.1\|4401478_4402480_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236898
CP027856.1\|AVP95288.1\|4396106_4396499_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
CP027856.1\|AVP95290.1\|4398006_4398474_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP027856.1\|AVP95286.1\|4393413_4394667_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
CP027856.1\|AVP95300.1\|4413908_4414316_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
CP027856.1\|AVP95293.1\|4401131_4401251_+\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95298.1\|4411930_4413304_+\|biopolymer-transporter-ExbB	unknown	unknown	gnl\|CDD\|376576
CP027856.1\|AVP95295.1\|4406694_4407720_-\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226642
CP027856.1\|AVP95285.1\|4392627_4393263_-\|peptidase	unknown	unknown	gnl\|CDD\|379310
CP027856.1\|AVP95291.1\|4398931_4399045_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95302.1\|4414979_4416215_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95292.1\|4399411_4400863_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|349885	cd03890, M20_pepD, M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide. Peptidase M20 family, Peptidase D (PepD, Xaa-His dipeptidase; X-His dipeptidase; aminoacylhistidine dipeptidase; dipeptidase D; Beta-alanyl-histidine dipeptidase; pepD g.p. (Escherichia coli); EC 3.4.13.3) subfamily. PepD is a cytoplasmic enzyme family characterized by its unusual specificity for the dipeptides beta-alanyl-L-histidine (L-carnosine or beta-Ala-His) and gamma-aminobutyryl histidine (L-homocarnosine or gamma-amino-butyl-His). Homocarnosine has been suggested as a precursor for the neurotransmitter gamma-aminobutyric acid (GABA), acting as a GABA reservoir, and may mediate anti-seizure effects of GABAergic therapies. It has also been reported that glucose metabolism could be influenced by L-carnosine. PepD also includes a lid domain that forms a homodimer; however, the physiological function of this extra domain remains unclear.	0
CP027856.1\|AVP95669.1\|4405642_4406680_-\|peptide-ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	6.61821e-106
CP027856.1\|AVP95289.1\|4396561_4397830_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP027856.1\|AVP95668.1\|4402669_4403728_-\|peptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	0
CP027856.1\|AVP95299.1\|4413314_4413842_+\|biopolymer-transporter-ExbB	gnl\|CDD\|376576	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.	3.52095e-19
CP027856.1\|AVP95297.1\|4411169_4411934_+\|hypothetical-protein	gnl\|CDD\|378764	pfam11932, DUF3450, Protein of unknown function (DUF3450). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.	3.50646e-94
CP027856.1\|AVP95301.1\|4414332_4414968_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.11264e-15
CP027856.1\|AVP95287.1\|4394870_4395974_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
CP027856.1\|AVP95296.1\|4408459_4411066_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.78101e-47
CP027856.1\|AVP95294.1\|4401478_4402480_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	1.36387e-151
CP027856.1\|AVP95288.1\|4396106_4396499_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.52154e-62
CP027856.1\|AVP95290.1\|4398006_4398474_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	6.26673e-98
CP027856.1\|AVP95286.1\|4393413_4394667_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
CP027856.1\|AVP95300.1\|4413908_4414316_+\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	8.48279e-31
CP027856.1\|AVP95298.1\|4411930_4413304_+\|biopolymer-transporter-ExbB	gnl\|CDD\|376576	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.	1.2712e-31
CP027856.1\|AVP95295.1\|4406694_4407720_-\|peptide-ABC-transporter-permease	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.02077e-106
CP027856.1\|AVP95285.1\|4392627_4393263_-\|peptidase	gnl\|CDD\|379310	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain. This family is related to pfam03734.	8.7234e-98
CP027856.1\|AVP95302.1\|4414979_4416215_+\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.17926e-06

>CP027856.1|AVP95294.1|4401478_4402480_-|peptide-ABC-transporter-substrate-binding-protein
MSTLLSVRDLKQHFKMGGGFLRKPYTVYAVDGISFDLKQGETLGLVGESGCGKSTLGRSLLKLFEPTAGQISFEGRDITRLSPGEMRSLRQEMQIVFQDPAESLNGRHTVGQILEEPFIIHGKGNTAQRRGWVLELLDKVGLPKSAVDRYPHEFSGGQRQRIGIARAIALKPKLLVCDEAVSALDVSVQSQIVNLLLTLQREMNLAIIFIAHDLSVVKHISDRIAVMYLGRIVELAEAQQLYLSPRHPYTQALISAIPVPDPRRRNQRILLTGDVPSPISPPSGCHFHQRCPYATELCRGTSPSLEPCGTEAHQVACHFPLSVVEAAPLGKAV
>CP027856.1|AVP95293.1|4401131_4401251_+|hypothetical-protein
MFENLAVLFHLKGASSKKGTQEKDTYAPSTRNYYFRYGA
>CP027856.1|AVP95292.1|4399411_4400863_+|cytosol-nonspecific-dipeptidase
MAQLSSLSPKLIWQFFEQICSIPHPSKHEAKLSAWIVQWAQGEGLAVKQDAVGNIIIKKPATPGMENRKAVVLQAHIDMVPQANADTQHDFATDPIDAYIDGDWVTARGTTLGADNGMGMAGCLAVLADKTIKHGPLEVLLTTDEETGMTGAFGLEAGWLEGEILLNTDSEEDGEVYMGCAGGVDANIRFPLEQVAATQGEGFELQVKGLRGGHSGVDIHRGRGNANKLLVRLLKAAEPLGVRLAEISGGTLRNAIPREARATLLVPTASVSEFKVLVDRYAGIYQSELAATEANLTVLLSGRDMPAKLMSESLQTRLLDALMACPNGVIRMSDAIPGVTETSTNLGVIKTLEGEVYVQCLIRSLIDSGRESVEQMTSSLFSLAGASCEFTGAYPGWAPNVDSPVMALVRSSYQTLFGEMPNVMVIHAGLECGLFKSAYPDWDMVSFGPTIRGAHSPDERVHIPAVERFWQLLVHVLEQIPAK
>CP027856.1|AVP95291.1|4398931_4399045_-|hypothetical-protein
MLSNQEFIMSGSNSTYWFAQSLYTQGFNYPNPYAGRR
>CP027856.1|AVP95290.1|4398006_4398474_-|xanthine-phosphoribosyltransferase
MPKKFYVSWDNLQREARRLARRQLPVSQWKGIIAVSRGGLVPAALMARELGIRNVETLCISSYDHNSQRELVVVKAATTAGDGEGWLVVEDLVDTGTTAKAIRELYPKAKFIAIFAKPMGEQLLDDFEVAIPQDTWIEQPWDMALEFANPICDEE
>CP027856.1|AVP95289.1|4396561_4397830_-|esterase-FrsA
MEPNDDTNLTEKLFTRIKQVLETSEISNSSPVDEQDSSLAESFIDGALSPHWYRLLRRPTWAWQGADPVEVEQTLARIAMGQGERSHERYLDTIKGYVPGNWVYEWSQLAGRYFNAGRELVSQGDSAGALKNLLKAVRYYSIASYPHLKNDELADQAQLLCNMAYREAGRLFKVPLKELQVPFRGKTIQGYLHLPTTDRPVPLVIVSGGIDALQVDFLNFYFKCLEPHGIGMLSLDMPGTGYAEHWPLVQDTSRLHQAVLNHLSEVAWVDHQRIAMVGFRLAGNVAARLAFIEPFKLRTVVCIGAGINQVFTNQEMFARCPRMMRDGLANRLGADAAQWDLLRTKCQVFSLKTQGLLGSRTSVPILSIGHKRDFICPEQDVRALASASRNGKAVVFDKQPLLEVYDEALKETVDWLKKHLCT
>CP027856.1|AVP95288.1|4396106_4396499_-|sigma-factor-binding-protein-Crl
MSERVTYKRLLRQFAAIGPYLREDLCEEGRYRFDCLSVCVSAKPAPDKREFWGWWLVLEQEDHSFSYHYQVGFYNADGEWINKPLPKKHQAEVERTLNHFYKLISAKLTLLECTLSPAKQVTAELNVTAA
>CP027856.1|AVP95287.1|4394870_4395974_-|glutamate-5-kinase
MENRTIVVKLGTSVLTGGSARLNRAHMVELVRQCAALHRHGHRVVLVTSGAIAAGREHLGHPPLAPTLPNKQMLAAVGQTQLIRVWQDLFNLYGLHIGQMLLTRADLEDRERYLNARDTLRTLLDHRIIPVINENDAVATAEIKVGDNDNLSARAAILADADLLILLTDQKGLFTADPRTNPDAQLIEEVQTIDDTLRSLAGDSVSGLGTGGMATKLQAADVARRAGVNVVIATGQIPEVIGRLAAGERVGTLFPALASPLEGRKSWILAGPPPHGEVQVDQGAVAAMQEKGSSLLPKGIVAVKGDFVRGDVVRILGPQGSELARGICRYDHLELEKLRGLHSDQIEAVLGYGYGAVAIHRDDMVLL
>CP027856.1|AVP95286.1|4393413_4394667_-|glutamate-5-semialdehyde-dehydrogenase
MSLEKMGQAAREAAYQLATISTAQKNRALAAIADELEAHSAQILAANEKDIAAGRDAGLSEAMLDRLLLNPARLAGIVADVRKVISLDDPVGAEIDSRVLENGLRLSRRRVPIGVIGVIYEARPNVTIDIASLCLKTGNASILRGGRETFHSNLELVRVIQSALAASGLPGDAVQYIDNPDRALVGELLRLDRYVDMIIPRGGAGLHKMCKENSSIPVIIGGFGISHIFVDESADLERSLAVIDNAKVQRPSACNALDTLLVHEQIAACFLPQLVSLMNERKVTLVGAANAMPLLAGADNLCEAGAEDFDTEWLGLTLGVKLVADVNEALAHMREHNAGHSDAILTNDLANAERFVNGAGSAAVYVNASTRFTDGGQFGLGAEVAVSTQMLHARGPMGLTELTSYKWVGQADYLIRA
>CP027856.1|AVP95285.1|4392627_4393263_-|peptidase
MKRQYWMSRLASLWLGLPLLLGALCFSSQGHASWDQDLYRQLGLAGKLDKQVFRKALQGYQDVRHKRKPILTIIDYSKPSTMRRLFVIDVKRHKLLYHTWVSHGRNSGELAARQFSNQLNSRQSSLGVYRTAETYQGKHGYSLRLDGLSPGKNSNARKRAIVVHGADYASPRHLQKYDKLGRSWGCPALPREQSRAIIDTIKGGSVIYAHG
>CP027856.1|AVP95668.1|4402669_4403728_-|peptide-ABC-transporter-ATP-binding-protein
MAETQAAILDVRDNGGKFTADNGQGRGPILEVRDLEVEFSVDDGKIKVLDGVSFQVAPGQTLGIVGESGCGKSVTSLAIMGLLPRPHGQVVAGSIRFQGEELLSLPPDQMYKVRGNRISMIFQEPMTALNPVQTVGAQLMEVFSLHRPDFSKAQRKEAAIAMLQKVGIPEPAQRFAVYPHNLSGGMRQRVMIAMALACEPDLLICDEPTTALDVTIQAQILDLMKALQAQTGMAIIFITHDLGVVAELCDEVVVMYAGRAVERADIFELFDHPRHPYTHGLMASIPRLEDVPKSLLKTIKGQVPALHEMPAGCRFSNRCPHATEICVDTIPVTEQLSERHAVACHHWKELSI
>CP027856.1|AVP95669.1|4405642_4406680_-|peptide-ABC-transporter-permease
MNPVTLKKLKRFKSIKRGYYSFVIFSVLVVISLLAELLVNSRALAVSYQGELYFPTYGDVIPGQQFGLDYEYETNYRQLKGKFAQEEKGDWVLLPLVPWNPYEQDFKEEAYPPYAPSLTERHFLGTDTSGRDVLARLVYGFRIAIGFAFITLVASYVIGVSIGCMMGFLGGRFDLVLQRFIEIWSQVPFLYVIMILVSLAKPNFGLFVGINVLFGWMGITWYMRTLTYKERARDYVMAARAQGASTKRIIFNHILPNTLMMIVTLAPFAVVGNISTLTALDYLGFGLAPPTPSWGELLSQGINNLDAIWIVSSVVAAVSLVLIMVSFIGEAIREAFDPRKFTRYQ
>CP027856.1|AVP95295.1|4406694_4407720_-|peptide-ABC-transporter-permease
MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLLQAQVSQNETGRSSGSKGAQALSDEQIEELKAFYGLDKPMLIAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYALPAYVVGIFLITVFAFHLEWLPMGGFPGDDFDSMESSWDQIRTLFAHALLPLIAYAIGDFAILTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDYPTVMGILAITSMLMLVGNIVSDICVALVDPRVRFGD
>CP027856.1|AVP95296.1|4408459_4411066_+|TonB-dependent-receptor
MLRKSRLSAAVAFALASAAVVVTPALAEEGQNVEKLQKIKVTGSRISRVDVEGSTPVVSVTKAKIEASGQQTVADYLKQASYNSFGGVSPASGSSFQSQSTVGLRGLGSERTLVLLNGKRVAGSPTMGGTSINLNTIPMAAVERVEVNLDGGSAIYGSDAIGGVINVVLKEGYEGLTFQGRLGSPTEPGGDEASGSVVAGVNGEKGSLMAVYEHDKKDVVYARDRDYLAKQGNDAPSAYGRNVEGITGLDANGDPIWKYGPLAGATNADGSCKEPFIGFEGGCNFNYGQVAATTASRSRDTLYVNGRYHINDNVDFVPQIIGSRVESFGRFAPAAGAFAIDPSNPNNAQFFTDNGLDAAATQGLGEAAYAYYRFSNVGPRDNYVTDMTGSLNLGFEGTVTTESVGDMQWNAGYMYSKTDNKENGTGYVLQSAAQQAIADGKFVGGEFDPKSTAAMAADTSRRSTMDFYQWYAGVQWDMGELPAGPVSWYAGAEYNDWVYTDKYDAQSEAGNIIGSAGNSSGGVRDVTAAYIESLVPITEQVELNLAGRFDDYSDFGSAFSPKASLRYQPLDNLMLRTSWSRSFRAPSLSDLYAADSFSADWAKDYVYCEANGISAADCPNRQYDTTRTANEELKEETADTWNFGVAYSPLDDLNLSLDYYTIKIEDVIQLNTLQSVIYDELNNGGSSNITRNSQGKISNAISPMVNRGTLNTSGLDLKLDYRYDLTSATIRYDLGGTYILDYKEGLYAGGPVIDKIGQNGKPQMRFSTGVGVNVPQWWNMDSYLSANYIDSQSQDYIADTGEEVGHIASQTTWNLNVGVDAPWNGKIQVGVKNMFNAGPSLESDGFTYDEELYSIDGRIYYLDYAQKF
>CP027856.1|AVP95297.1|4411169_4411934_+|hypothetical-protein
MKKALLGSLVSAALLTSFNLSAASAGQAVDAQAATDNASKVSQQKIDSYAESAESALAQYKAALRQVDSLRTYNEQVGKMVDSQSAELASMQRQIAQIDQTSTEVVPLMLKMIDSLDQFVALDLPFQKVEREDRVAALTDLMNRADVTISEKYRKILEAYQIEEGFSRTIESYKASLDKDGGEKTYEFLRVGRIALLYQSPDGNETGMWNKQTRQWEELPQEYRSAVEQGLRIAKKQAPPALIKLPVQTAEKAS
>CP027856.1|AVP95298.1|4411930_4413304_+|biopolymer-transporter-ExbB
MKGIRLAIASLIAGATLFTLPVTAAEKPVDLNALLNQVKAASTSESQLNKEREARFLADKNEQGALLAKAKAELAAETAKGEQLKATFDANDKQLTELTETLRQRSGNMGEMFGVLRQFAGEFKGIFNASARRVEHPEQTALLTRLAESKELPSSDDLTAFWTTTLGRMVDGGKVSQIPATVVYGEGNQAEKTVTQIGEFNTVSEGKYLTFVPETGKFEQLSRQPDNAVLEPIAQFEQGNGAVEPIFIDPSRGVILSLLVQSPTFKERVDQGGEVGYVIMVLGVLGTLLAIFCGLRLSMIGSAMRKQLKSDQIVKGNPIGEMLGAYQSHRGDNIEDLESKLDEIILRNVPKFEKGISIIKLIASVAPLLGLLGTVVGMIATFQAITLFGTGDPKLMAGGISEALVTTMQGLVVAVPMLFLYTIVQTQSRRLIQVLEEQSAGFVARYQERLHAAKAAA
>CP027856.1|AVP95299.1|4413314_4413842_+|biopolymer-transporter-ExbB
MWFWLIEEVESVRRFLGLGGDVLVALFFLTLMMWALLLERWFYFMAVYPQQVKQTKATWMARSDHLSWSAKQIRRELVSRVAMAVDKGMPVIKVLIALCPLMGLLGTVVGMVQVFDTLAITGTGSPRAMASGISKATVPTMAGMIAALSGLFFVNQLDHKAKLAVQKLEDNLKHG
>CP027856.1|AVP95300.1|4413908_4414316_+|biopolymer-transporter-ExbD
MRKRHSDSGADEAAIDLTPMLDIVFIMLIFFIVTTSFVKESGVEINRPSASTAETVKKGNIMVAVRENGQVWVDKRVVEVGAVRANIERLRAENPESAVVIQADTESRSGLVVQVMDQIRMAGVQNISIAASKSS
>CP027856.1|AVP95301.1|4414332_4414968_+|sugar-ABC-transporter-substrate-binding-protein
MRYLIAIAVSCVVVFFLFLGMNKLITPDHRELTEREDVTMTDFIRLKPQETLQEKQRELPKPPPPNRPPPPPEMEVASTDRPKMDSAPMDMPKLDIPVNIGGGNALGAYSTGGGGGGMGGNNGAMPMATFEPMMPRKAALAGLASGKVLVEFTVTERGTVSNIRIVKEEPRSYDLGKEARKTIAKWTFKPAMVDGKPQASRMQQEIEFAVN
>CP027856.1|AVP95302.1|4414979_4416215_+|hypothetical-protein
MKKLHTLILAPVAMAVLLSTASWAAEQPALSDRAYRAVNKAQALITEKKYGEANAKLQDALSGAGDRVYDKGVILQTLGFVAAQQEKYGQATKYFADAIATGGLPQPVAQQVRYNLAQLYMAEGNFKASISTMNEWFANLGKDEKPTPHAYITLANAHVQLKQYREAIPAVDQAIRLSAGKAPESWFLLKMAAHYELKQYKPATEVLTALVDRYPEKKKYWTQLSAMHMQAGNDAKALAALESAYNLGMLTEAAELQRLANYLAFAGIPHRAARVMEKAMKEGQIESNAANYKTLANYWHQAKELDPAIDTLAKSYQLAPSAELQLKMARMMIQSKRYKDLVALAAKPAVNASGEQRADLKFLTGVAYFEQQKPKEALSAFTQAAQNGNVSGRASPWISFLKEQQGGAVTQ

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Crispr_ID: CP027856_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027856_24

4435950-4436100

Orphan

Consensus_repeat	Method
CTTACTCCTGGAAGTAGGTGCCCCAGCCGTCGTAGTCCACGCCGTATTTTTC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP027856_24

>merge|CP027856|24|4435950-4436100|CRISPRCasFinder
CTTACTCCTGGAAGTAGGTGCCCCAGCCGTCGTAGTCCACGCCGTATTTTTCCAGGGAAAAACGGTCAGCATCTTCTCGCTGGCAACCAGGAAGACACTCTTACTCCTGGAAGTAGGTGCCCCAGCCGTCGTAATCCACGCCGTATTTTTC

>CP027856|24|24|4435950-4436100|CRISPRCasFinder
CTTACTCCTGGAAGTAGGTGCCCCAGCCGTCGTAGTCCACGCCGTATTTTTC	CAGGGAAAAACGGTCAGCATCTTCTCGCTGGCAACCAGGAAGACACT
CTTACTCCTGGAAGTAGGTGCCCCAGCCGTCGTAATCCACGCCGTATTTTTC

Protein	Signature genes	Signature genes Name	Protein_function
CP027856.1\|AVP95310.1\|4430160_4431240_+\|ribosome-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
CP027856.1\|AVP95315.1\|4433888_4435859_+\|diguanylate-phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
CP027856.1\|AVP95318.1\|4437613_4437748_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95312.1\|4432413_4432677_+\|DUF2960-domain-containing-protein	unknown	unknown	gnl\|CDD\|371406
CP027856.1\|AVP95314.1\|4433227_4433722_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95326.1\|4446881_4447814_-\|glutaminase	unknown	unknown	gnl\|CDD\|234880
CP027856.1\|AVP95319.1\|4437975_4439253_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
CP027856.1\|AVP95322.1\|4443830_4444466_-\|lysine-transporter-LysE	unknown	unknown	gnl\|CDD\|280058
CP027856.1\|AVP95317.1\|4437233_4437455_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95321.1\|4443000_4443861_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP027856.1\|AVP95313.1\|4432679_4433078_+\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95325.1\|4445559_4446852_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
CP027856.1\|AVP95309.1\|4429568_4430114_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
CP027856.1\|AVP95320.1\|4439353_4442917_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|215595
CP027856.1\|AVP95323.1\|4444467_4444848_-\|hypothetical-protein	unknown	unknown	unknown
CP027856.1\|AVP95324.1\|4445146_4445356_-\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
CP027856.1\|AVP95671.1\|4431282_4432155_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|234591
CP027856.1\|AVP95308.1\|4428050_4428260_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP027856.1\|AVP95311.1\|4432151_4432424_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378300
CP027856.1\|AVP95307.1\|4427110_4427779_+\|opacity-associated-protein-A	unknown	unknown	gnl\|CDD\|282128

Protein	Function_ID	Function_description	E-value
CP027856.1\|AVP95310.1\|4430160_4431240_+\|ribosome-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
CP027856.1\|AVP95315.1\|4433888_4435859_+\|diguanylate-phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	9.34061e-103
CP027856.1\|AVP95312.1\|4432413_4432677_+\|DUF2960-domain-containing-protein	gnl\|CDD\|371406	pfam11173, DUF2960, Protein of unknown function (DUF2960). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	4.04413e-36
CP027856.1\|AVP95326.1\|4446881_4447814_-\|glutaminase	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
CP027856.1\|AVP95319.1\|4437975_4439253_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	9.86183e-24
CP027856.1\|AVP95325.1\|4445559_4446852_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	2.44258e-61
CP027856.1\|AVP95321.1\|4443000_4443861_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.27495e-25
CP027856.1\|AVP95322.1\|4443830_4444466_-\|lysine-transporter-LysE	gnl\|CDD\|280058	pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.	1.4343e-17
CP027856.1\|AVP95309.1\|4429568_4430114_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	7.04606e-127
CP027856.1\|AVP95320.1\|4439353_4442917_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|215595	PLN03130, PLN03130, ABC transporter C family member; Provisional.	3.49853e-139
CP027856.1\|AVP95324.1\|4445146_4445356_-\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	2.37867e-28
CP027856.1\|AVP95671.1\|4431282_4432155_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	0
CP027856.1\|AVP95308.1\|4428050_4428260_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	5.5946e-30
CP027856.1\|AVP95311.1\|4432151_4432424_+\|hypothetical-protein	gnl\|CDD\|378300	pfam09905, VF530, DNA-binding protein VF530. VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.	2.18738e-48
CP027856.1\|AVP95307.1\|4427110_4427779_+\|opacity-associated-protein-A	gnl\|CDD\|282128	pfam04225, OapA, Opacity-associated protein A LysM-like domain. This family includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation. This is a LysM-like domain.	1.18625e-09

>CP027856.1|AVP95315.1|4433888_4435859_+|diguanylate-phosphodiesterase
MNSSLSLALLQQIIDQLPMNIFCRDTAGRYLFANKAFAREAGLSQPDDLIGKTDAEMPWGDLFREEDGRLLAEGKPLLHQQLHCHGGAGANWMEIHKVPLYDEQGDPLALFAMVSAIDQRKELEQTFRQQQLLQRRLLDAIPDLIRLEDHQGVLIDCNQAFLDFMGLSASDALGRRVPPRLPVEQTLGQGEYCVVDAQGKGRHLEVTRVEVPDDEGNSLGILTLSRDITGLRTTQAQLQQEQHYDSLTGLLKLSHFLQTSRHLGARKASLLLVDLQHFREINDRFGIRVADRLLSQVARRLQRLAPPQSLLCRVAADDFALLLPELPLSLDEWSRNLQQELMAPYQVEEHRIQIPVFLGIAHGKAKEAERLLSHAEAALAQGKRQQQHCTLFDPELDAKLKRRQLIAAQLPLAIKSAELTAVYQPIICTHSNRLHGAELLCRWPHPEFGMISPDEFIPLAEELGLIGQLGQLMLELGCAQLARWQVAAPDLVLSINLSPLQFRDPELCPQIFDCIERHGLAPWQLELEITEGVLMENADEIESNLACLIEAGFQLAIDDFGTGYCSLAYLPRLQVATLKLDRSFTQGLASNQATTAIVRSVIGLGHELGIRITAEGVETVEQQAWLAQAGCDRLQGYLFSRPLPPAEFARNYQLPD
>CP027856.1|AVP95314.1|4433227_4433722_-|hypothetical-protein
MKKIMGGALALLMVGCASDNNGGEQYRYTPPVAKATNNTQEMAIPVDLVWARAEKWFGDHGLNIENSQRGSGLMTANVENAAEGLEWLDCGTMGSKVALGNPNLQINLIITQSGNNSVATVNVKGNTQLYFVESSGERVLAPSITPVCVSRGSLEQSLFATLGN
>CP027856.1|AVP95313.1|4432679_4433078_+|hypothetical-protein
MRTLTLMAASLLLAACSTQPPQLVGNDQDAHGCRASAGYQWSPLLGQCVRLFEQAVRLQSLEATETGSAFVLFNADQSKAELTLPSGELIPLERQGEEGNWSWQGGAYQLFPWKGYVLKSGERALFHGDSAL
>CP027856.1|AVP95312.1|4432413_4432677_+|DUF2960-domain-containing-protein
MAFKITYTYKKQAKEIGYANDKFNSIYDAIAAAEGLDLSSFHAMEAQLAQVCRRDKKSVKDYRENYFKELGFSNVVIERDTLEDKQE
>CP027856.1|AVP95311.1|4432151_4432424_+|hypothetical-protein
MSDQSKPGSSQKNNPLHGLTLEAIVTALVEHYGWEALGQQINIRCFTDDPSVKSSLKFLRKTPWAREKVESLYLYVQRKQAKQKEDPSGV
>CP027856.1|AVP95671.1|4431282_4432155_+|phosphatidylserine-decarboxylase
MSITDNLKIAGQYCLPKHALSRLVGKLAAAEAGNLTTRVIEAFIKQYGVDMSEALHEDPAHYASFNAFFTRELKPGIRPLVEDAMTLALPVDGTVSQLGPIHQGRIIQAKGHDYSARELLGGFEDLVAPFKDGDFATIYLAPKDYHRIHMPLDGVLESMVFVPGDLFSVNPLTAENVPNLFARNERVVATFRTPHGPMALVLVGATIVASIETIWAGNIAPTKQKEVVRWDYTGDEAITLQKGAEMGLFKLGSTVVCLFGPGMLAGFEPHLANGVTTRMGQPFAKLADQA
>CP027856.1|AVP95310.1|4430160_4431240_+|ribosome-biogenesis-GTPase-RsgA
MYHTGFGSVHKLANRVAKKAKLNLGQQRRVQANRERRLQKDHTTVVDDTLFGPAIEGVVISRFGQHADVEAVDGTIHRSNLRRSSINSLVCGDKVVWRPGLNAATAGVIEAVHPRHSVLTRPDFYDGVKPIAANIDQIVIVSAVMPEFSTNIVDRYLVAAEDVEIAPLIVLNKVDMLDEAARTRVEGQLAAYRKLGYPVILVSCESGEGLDQLKAALTDKISIFVGQSGVGKSSLTNALMPGLGVLTGEISENSGLGTHTTTTARLYHFPSGGDLIDSPGIREFALWHLEADRITWCFVEFRDYLGSCKFRDCTHKDDPGCALRAAVSSGAISPDRFHNYHRILETMQEARHGRQQARL
>CP027856.1|AVP95309.1|4429568_4430114_-|oligoribonuclease
MTVSAQNLVWIDMEMTGLDPEENVVLEIATIVTDKDLNVLAQGPVIAIHQSDEELAKMDDWNVNTHTKSGLVARVKASEHDEARAVAETLDFIRQWVPERTSPLCGNSIGQDRRFMVKHMGELEAFFHYRNVDVSTIKELVRRWQPELLEKFTKSGSHQALDDIRESIAELQFYRSHVFKI
>CP027856.1|AVP95308.1|4428050_4428260_+|cold-shock-protein
MSDIRTGQVKWFNETKGFGFIEQSQGPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGKKGPQAENVTLL
>CP027856.1|AVP95307.1|4427110_4427779_+|opacity-associated-protein-A
MPTPDRRPRGHNRRAQQRRQDESQGTLLHRINAATLPLRQRLGQGLGGLGQRNKEPKAASFKLASPLPRKHTLGLLVLVPLWLLLLAWEPAPAAPKAAPSGSLAVPLAVPTQALTVGNGAASSAPAAAKPVEEKVDGTWLQHEVQAGETLYSIWRKFELPGAELSRLIAIEGPDRPLTRLQSGKSVFILVDTSRRIQRVEIRSFGQANYRYDRQGEGFALKE
>CP027856.1|AVP95317.1|4437233_4437455_-|hypothetical-protein
MNSRERVLAHLATDHRVAGLTAGEALAGISHSMSSLLLQQDQHFFRCHADDPCHEVARACSAGHVWHGDENRY
>CP027856.1|AVP95318.1|4437613_4437748_-|hypothetical-protein
MKPRWIRFRKRRKETDPEGVLQAGLLVFSATCGATLLLAACNGG
>CP027856.1|AVP95319.1|4437975_4439253_+|alpha/beta-hydrolase
MSSPLHYVLDGIHCEPHFFTVPLDHQKPDDEESITLFGRTLCRQDRLDDELPWLLYLQGGPGFGAPRPTASGGWIKRALQEFRVLLLDQRGTGHSTPISAEALAGLTPVEQADYLSHFRADSIVRDAEYVRDTLSPDRPWSLLGQSFGGFCSLTYLSLFPDSLHEVYLTGGVAPIGRNADEVYRATYQRVADKNRAFFARFPHAQAIANRLATHLHRHDVRLPNGQRLTVEQLQQQGLDLGASGAFEELYYLLEDAFIGERINPAFLYKVQAMQPFNTNPVFAILHEAIYCEGAASNWAAERVRAEFPALAWAPGKDFAFTGEMIFPWMFEQFRELMPLKEAAHLLAQKADWGPLYDQAQLARNRVPVACAVYAEDMYVEFDYSRDTLKGLGNSRAWITNEYEHNGLRVEGEQILDRLIRLNRGC
>CP027856.1|AVP95320.1|4439353_4442917_+|ABC-transporter-ATP-binding-protein
MDHPEISAGWLSRLFYHWTGPLQRKGLTEPQVGLDDLYPLLPEDRRDERADAFLALTAAAPVRPWPIMAFIWRHYRRRIGLLTLLQLIGMLATLASPWLLNHSMTQLGTGASTGHKLLLAFALFASVLAAGMLAEHSLQLALKMHVPIRRLLAESLLAKVMKLGGKSFDDRAGGRVQNLINRDVWDITWILADPAMPLTMALQLAGTIALLVWQVGSAGLVGFAVLTLLLLLSTRVVRRMNQQEQQLKRQQDERNGILAEYIKKLRLVRQNGLGAFFTRAANAKRQQELGVLGRVLKLDAINSFLMMSTPLLVTLATFTTYLASGQSLTLPQVFTTIALFAVLRIPMMRLPYLIRTLINFNTGFNRLCEFLSSPEQHRDLTDTSLPVGSLVLEEVTALHQQKPVLQEVSLSIQPGELVGITGATGAGKSCLLHLVAGFDNGFEGAIRRNGRVAHLGHKPWLMNDSIRNNILFGQPWHEDRYQWVLGACALTTDLGLLSHGDQTLVGELGTRLSGGQQQRVALARALYAEADILLLDNPLSALDPMVSAQVLEQGLAFKPGPTRLLVSHDPDVLAHCDRVIRIEQGRLVELGAHQLADLIQHPQPTPLVAPQEAEQFSEEKVVEGKVDWGLFGFMWQRLAAPGAILIALLLTLGQEGLRIASDLWLGGKAEVSDVSTLLGIYVLLGAGSLVCIMVVRVINYKLGLKLAWTLFDGMLGRISRAPMAFFDKVPQGRILNRFDRDLGEAQEVLLSMLMGLFGMLVSVLLQVVVIGINIPLLLLIAPLVGWALYVLQRRYRAVQLKLRRQSSVLRSPLYISISETIRGAPALRLAGAERFALDQVLHHYDNNLRSWYTTTSINRWLGMHQTLLSAALVGAVALMVAFGNSPLLGAVAITYAFTASAMLNSLIRTFAEVEQVMNAVERVREYSEIESERQEGEALATPHPAVRFDNLGLRYPGASQWALHRVNFELAPGEKVGVCGRTGAGKSSLLGVLQAMYPSSQGEIYYNDQPLSALAPEAVRDLYDTVSQIPLTFFGTLRANLAPLSEQSDAALEQALARVGLAERCAGRLDEDLDRLQLSAGETQLLVIARILLSRRPLIVLDEATSDLSHGGMRKMAELLYRYRPEASYLVIAHHLEPLLSVDKVVVMEAGTVVEQGSPVSLLANPGSRFHQLFAGQVNRQVGELTG
>CP027856.1|AVP95321.1|4443000_4443861_+|AraC-family-transcriptional-regulator
MWIPTEQQSCYKKSPKQSGSQGCVMSPRMEVVARQPQLEVALISSQGGGYPRHTHEEYVLSANLSGQERIWFDGKEQEVAPGQVTLYNPLTMQASTFGEDTRFISLHLSQERVKSLLDEAGLLPGQSPPAFMEGVHQIPALFHAILDLHRHPSANQREEALVRLLAALQRSSDPAPRLLQGRLPQLLDYMRDHLSQEISLDDLCQVACCSKFHLVRSFQQALHVPPIHYFNQLRLMEARRRLLQGEKPSQIALALGFYDQSHMSNAFRRVMGISPSRYGAPGTNST
>CP027856.1|AVP95322.1|4443830_4444466_-|lysine-transporter-LysE
MAFYNGFLLSLSLCLDIGLANMAMITLAMSRGFSHGFWLGVGTCVGDLIYAMLAMAGMAVLLQFEMVRWSLWIFGSVTLIWLTIKMGYAALQAQDGELNGVAQSGGRWRLFGRGMVLALSSPTAILWFAAVGGAIIARQGADPLNAGLFLSGFFSAGIFWALVLCTLAYQGGRLLGEKMVRFSYLASALIFAYFACYVIYQGYVEFVPGAP
>CP027856.1|AVP95323.1|4444467_4444848_-|hypothetical-protein
MMKMEFWPPRATHSVHMLTLMPPPALPARLREYICRVLSLVASLCELEGDLEGTRPQQNRLCESLMILLAEMAQRAEDPELGQLFGALSESLVGESQKSSMLAASWAAGPRSGEGNRYHQTIWEKV
>CP027856.1|AVP95324.1|4445146_4445356_-|YgdI/YgdR-family-lipoprotein
MKRLMMVLVCMLGLVACSSQYIMSTRDGKMITTDSKPKLDEDTGMYRYYDEEGREMLINKDDITQIMER
>CP027856.1|AVP95325.1|4445559_4446852_-|sulfurtransferase
MKRMTGLWRSCLAALLLWCAWPALAAELPPLSLADAKAKQAVILDTRPSYFYQGWPMAGEKQGGHVAGAENLSAEWKYSDEEWPKALASKGLKADLPVALYGAPREVAEVARLLRQQGIKQLFELQGWQSAPREHLARWQQLVYPLWLADLQAGKPVAATPKGDWKVFEVDWGAPKAYLLSHIPGAGYIDTNRLEEEPLWNKVSDEALKQLLLENGIRHDTTVILYGRNTMAAARAAHLMMYAGVEDVRLLDGGLDAWFVQHLRTETGLANKFEPVKEFGVTIPAHPEYYTTLSQAKELLKQPDSALVSVRTWDEFVGNTSGYSYIKPKGDIPGAKWGHGGVDANSMSDFHNPDGTMKPAREILAMWDQWDIAPTQQAAFYCGTGWRASEAFFYAWLMDWKRISVYDGGWYEWSSDPKNPTVTGERKPQG
>CP027856.1|AVP95326.1|4446881_4447814_-|glutaminase
MESSMVLSSELLASILEEVRPLLGQGKVADYIPALAQVPADRLGIAVCTVEGELFTAGDAFEPFSIQSISKALSLTLALTLYQEEEIWARVGKEPSGQPFNSLVQLEFEHGIPRNPFINAGALVVSDLLETRLTAPRQRTLDLVRRLSGNPAIMADQVVARSEYQHAARNAAIAYLMKAYGNFENEVDKVLQSYFNACAIRMSCVDLARAFIYLANRGAPLGESTPLLPARTTKQVNALLATCGLYDEAGDFAYRVGMPGKSGVGGGIMALIPGELTVCVWSPELNKAGNSLAGTAALELLAERLGRSIF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027856_2	2.1\|98212\|32\|CP027856\|CRISPRCasFinder	98212-98243	32	KJ608189	UNVERIFIED: Leuconostoc phage LLC-1, partial genome	1556-1587	9	0.719

1. spacer 2.1|98212|32|CP027856|CRISPRCasFinder matches to KJ608189 (UNVERIFIED: Leuconostoc phage LLC-1, partial genome) position: , mismatch: 9, identity: 0.719

gccagccgacctaatcccatcgcctgctggtt	CRISPR spacer
gccagccgaccttatcccatggcaaacatcat	Protospacer
************ ******* **  .*    *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1551201 : 1561179

uncultured_Mediterranean_phage(25.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVP93059.1\|1551201_1551963_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.3e-70	53.4
AVP93060.1\|1551967_1552585_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.4e-34	46.4
AVP95484.1\|1552587_1553163_+	DedA family protein	NA	NA	NA	NA
AVP93061.1\|1553172_1554237_+	peptidoglycan-binding protein	A0A0A7NU10	Lactobacillus_phage	2.2e-11	36.8
AVP93062.1\|1554283_1555267_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.9e-34	33.7
AVP93063.1\|1555355_1556369_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.1e-108	58.6
AVP93064.1\|1556548_1556764_+	30S ribosomal protein S21	NA	NA	NA	NA
AVP93065.1\|1556779_1557223_+\|tRNA	glutamyl-tRNA amidotransferase	A0A292GL36	Xanthomonas_phage	5.8e-27	47.9
AVP93066.1\|1557312_1559100_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.0e-73	41.1
AVP93067.1\|1559313_1561179_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6

DBSCAN-SWA_2

2991651 : 3002771

Tupanvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVP94152.1\|2991651_2993580_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	9.7e-127	38.0
AVP94153.1\|2993583_2994132_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.8e-14	37.2
AVP94154.1\|2994217_2994415_+	50S ribosomal protein L35	NA	NA	NA	NA
AVP94155.1\|2994429_2994786_+	50S ribosomal protein L20	NA	NA	NA	NA
AVP94156.1\|2995109_2996093_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	5.3e-36	38.2
AVP94157.1\|2996105_2998493_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	6.2e-06	25.5
AVP94158.1\|2998496_2998793_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.0e-11	35.6
AVP94159.1\|2998829_3002771_+	histidine kinase	A0A1V0SGX0	Hokovirus	3.5e-30	35.2

DBSCAN-SWA_3

3617104 : 3640372

Aeromonas_phage(90.91%)

capsid,bacteriocin,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVP94622.1\|3617104_3618505_-	hypothetical protein	A0A1I9KFD9	Aeromonas_phage	2.4e-220	92.3
AVP94623.1\|3618514_3618772_-\|bacteriocin	bacteriocin	A0A1I9KFI4	Aeromonas_phage	1.0e-23	96.5
AVP94624.1\|3618771_3619152_-	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	6.9e-53	88.9
AVP94625.1\|3619161_3619794_-	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	2.9e-88	85.4
AVP94626.1\|3619804_3620161_-	hypothetical protein	A0A1I9KFI0	Aeromonas_phage	6.1e-51	80.0
AVP95617.1\|3620170_3621973_-	hypothetical protein	A0A1I9KGC4	Aeromonas_phage	1.6e-102	65.8
AVP94627.1\|3624264_3625926_-	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	0.0e+00	93.8
AVP94628.1\|3625973_3626273_-	hypothetical protein	A0A2R4ALX6	Aeromonas_phage	4.7e-20	53.5
AVP94629.1\|3626265_3626496_-	hypothetical protein	A0A0M3LSI9	Mannheimia_phage	9.4e-21	59.2
AVP94630.1\|3626446_3628195_-	hypothetical protein	A0A1I9KFH7	Aeromonas_phage	2.9e-69	95.7
AVP94631.1\|3628204_3628882_-	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	7.9e-124	96.9
AVP94632.1\|3628894_3629476_-	hypothetical protein	A0A1I9KFD5	Aeromonas_phage	1.6e-104	96.4
AVP94633.1\|3629477_3629915_-	hypothetical protein	A0A1I9KFH0	Aeromonas_phage	1.5e-62	94.5
AVP94634.1\|3629981_3630371_-	hypothetical protein	A0A1I9KGB3	Aeromonas_phage	1.1e-58	92.2
AVP94635.1\|3630436_3631654_-\|capsid	major capsid protein	A0A1I9KFC6	Aeromonas_phage	1.2e-223	94.3
AVP94636.1\|3631725_3632652_-	hypothetical protein	A0A1I9KFD1	Aeromonas_phage	1.4e-147	89.9
AVP94637.1\|3632783_3633005_-	hypothetical protein	NA	NA	NA	NA
AVP94638.1\|3633001_3633592_-	hypothetical protein	A0A1I9KG26	Aeromonas_phage	2.0e-43	92.9
AVP94639.1\|3633849_3635976_-\|portal	portal protein	A0A1I9KFF7	Aeromonas_phage	0.0e+00	98.5
AVP94640.1\|3635975_3637673_-\|terminase	terminase	A0A1I9KFB6	Aeromonas_phage	0.0e+00	94.5
AVP94641.1\|3638227_3639103_-\|terminase	terminase	A0A1I9KFG9	Aeromonas_phage	1.0e-123	86.2
AVP94642.1\|3639103_3639289_-	hypothetical protein	A0A1I9KFC1	Aeromonas_phage	1.2e-13	62.3
AVP94643.1\|3639326_3639881_-	DUF2514 domain-containing protein	NA	NA	NA	NA
AVP94644.1\|3639880_3640372_-	glycoside hydrolase family 24	A0A193GZ38	Enterobacter_phage	2.3e-16	40.2

DBSCAN-SWA_4

3643491 : 3666655

Aeromonas_phage(87.1%)

integrase

attL 3665111:3665127|attR 3672879:3672895

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVP94648.1\|3643491_3644190_-	hypothetical protein	A0A1I9KFB9	Aeromonas_phage	1.5e-109	90.9
AVP94649.1\|3644186_3644609_-	hypothetical protein	A0A1I9KG18	Aeromonas_phage	6.7e-65	83.6
AVP94650.1\|3644605_3644923_-	hypothetical protein	A0A1I9KFA7	Aeromonas_phage	6.6e-49	86.7
AVP94651.1\|3644919_3645453_-	hypothetical protein	A0A2D1GG92	Gordonia_phage	5.4e-19	38.2
AVP94652.1\|3645449_3645890_-	recombination protein NinB	A0A1I9KFA6	Aeromonas_phage	1.7e-74	95.2
AVP94653.1\|3645892_3646120_-	hypothetical protein	NA	NA	NA	NA
AVP94654.1\|3646116_3646410_-	hypothetical protein	A0A1I9KG94	Aeromonas_phage	4.7e-49	94.8
AVP94655.1\|3646486_3646789_-	hypothetical protein	A0A1I9KFB1	Aeromonas_phage	1.0e-46	92.0
AVP94656.1\|3646775_3647447_-	hypothetical protein	A0A1I9KFB0	Aeromonas_phage	6.2e-105	87.9
AVP94657.1\|3647446_3648460_-	replication protein 15	A0A1I9KG10	Aeromonas_phage	2.3e-175	92.9
AVP94658.1\|3648456_3650052_-	type II restriction endonuclease subunit M	A0A1I9KFD6	Aeromonas_phage	3.2e-200	62.0
AVP94659.1\|3650262_3650481_-	hypothetical protein	A0A1I9KFG0	Aeromonas_phage	7.3e-31	100.0
AVP94660.1\|3650485_3650875_-	hypothetical protein	A0A1I9KF96	Aeromonas_phage	6.9e-56	94.9
AVP94661.1\|3650916_3651618_-	DNA-binding protein	A0A1I9KFA9	Aeromonas_phage	3.5e-127	99.6
AVP94662.1\|3651651_3651867_-	hypothetical protein	NA	NA	NA	NA
AVP94663.1\|3651920_3652619_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVP94664.1\|3653795_3654041_+	hypothetical protein	A0A1I9KF98	Aeromonas_phage	9.7e-32	90.1
AVP94665.1\|3654436_3654628_+	hypothetical protein	A0A1I9KG01	Aeromonas_phage	7.8e-21	87.1
AVP94666.1\|3654630_3655005_+	hypothetical protein	A0A1I9KFC9	Aeromonas_phage	1.1e-37	67.7
AVP94667.1\|3655001_3656024_+	hypothetical protein	Q9T173	Listeria_phage	7.6e-46	38.2
AVP94668.1\|3656033_3656924_+	hypothetical protein	A0A2H4J1F0	uncultured_Caudovirales_phage	1.5e-45	52.5
AVP94669.1\|3656972_3658082_+	hypothetical protein	A0A1I9KFA0	Aeromonas_phage	6.9e-85	87.1
AVP94670.1\|3658135_3659356_+	hypothetical protein	A0A1I9KG78	Aeromonas_phage	4.8e-180	83.3
AVP94671.1\|3659492_3660095_+	hypothetical protein	H9C0R1	Aeromonas_phage	1.2e-62	56.3
AVP94672.1\|3660153_3660333_+	hypothetical protein	A0A1I9KFZ1	Aeromonas_phage	1.0e-22	88.1
AVP94673.1\|3660353_3661265_+	recombination-associated protein RdgC	A0A1I9KF67	Aeromonas_phage	1.5e-82	50.6
AVP94674.1\|3661261_3661777_+	hypothetical protein	A0A2I7R165	Vibrio_phage	4.4e-18	34.7
AVP94675.1\|3661773_3662385_+	hypothetical protein	A0A1I9KF82	Aeromonas_phage	7.2e-52	59.1
AVP94676.1\|3662381_3663548_+	hypothetical protein	A0A1I9KFE6	Aeromonas_phage	2.5e-16	54.5
AVP94677.1\|3663511_3663730_+	hypothetical protein	A0A1I9KF77	Aeromonas_phage	4.6e-33	93.1
AVP94678.1\|3663785_3664208_+	hypothetical protein	NA	NA	NA	NA
AVP94679.1\|3664210_3664516_+	nucleoside 2-deoxyribosyltransferase	A0A1I9KFD3	Aeromonas_phage	5.8e-42	87.6
AVP94680.1\|3664827_3665232_+	hypothetical protein	A0A1I9KG69	Aeromonas_phage	1.0e-49	77.9
3665111:3665127	attL	NA	NA	NA	NA
AVP94681.1\|3665195_3665402_+	excisionase	A0A1I9KF80	Aeromonas_phage	8.1e-32	92.6
AVP94682.1\|3665374_3666655_+\|integrase	integrase	A0A1I9KF78	Aeromonas_phage	2.7e-141	59.2
3672879:3672895	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027856

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection