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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP027778 Clostridium botulinum strain Mfbjulcb6 chromosome, complete genome 1 crisprs DEDDh,csa3,RT,WYL,cas3,DinG,cas14i 0 1 3 0

Results visualization

1. CP027778
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027778_2 295832-296003 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP017947 Bosea sp. Tri-49 plasmid unnamed1, complete sequence 16583-16612 6 0.8
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 66433-66462 6 0.8
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010590 Phaeobacter gallaeciensis strain P11 plasmid pP11_b, complete sequence 91856-91885 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010611 Phaeobacter inhibens strain P92 plasmid pP92_a, complete sequence 133595-133624 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP035422 Leisingera sp. NJS204 plasmid unnamed5, complete sequence 94413-94442 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP021042 Phaeobacter gallaeciensis strain P129 plasmid pP129_b, complete sequence 76041-76070 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP038240 Leisingera sp. NJS201 plasmid unnamed6, complete sequence 127765-127794 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010675 Phaeobacter gallaeciensis strain P75 plasmid pP75_b, complete sequence 88366-88395 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NC_023148 Phaeobacter gallaeciensis DSM 26640 plasmid pGal_B134, complete sequence 91947-91976 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP021916 Sagittula sp. P11 plasmid unnamed3, complete sequence 33293-33322 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010791 Phaeobacter gallaeciensis strain P63 plasmid pP63_x_draft, complete sequence 88366-88395 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010870 Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6001, complete sequence 142261-142290 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010631 Phaeobacter inhibens strain P78 plasmid pP78_b, complete sequence 88366-88395 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010716 Phaeobacter piscinae strain P18 plasmid pP18_a, complete sequence 133595-133624 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010658 Phaeobacter piscinae strain P71 plasmid pP71_b, complete sequence 104192-104221 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010601 Phaeobacter inhibens strain P83 plasmid pP83_b, complete sequence 79517-79546 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010619 Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_b, complete sequence 130548-130577 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NC_009957 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI03, complete sequence 41-70 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010727 Phaeobacter inhibens strain P88 plasmid pP88_b, complete sequence 153003-153032 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NC_009955 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI01, complete sequence 189766-189795 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010638 Phaeobacter gallaeciensis strain P73 plasmid pP73_b, complete sequence 88366-88395 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010770 Phaeobacter piscinae strain P13 plasmid pP13_c, complete sequence 79548-79577 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010707 Phaeobacter inhibens strain P66 plasmid pP66_b, complete sequence 79517-79546 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP014798 Salipiger profundus strain JLT2016 plasmid pTPRO2, complete sequence 65233-65262 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP010662 Phaeobacter inhibens strain P74 plasmid pP74_a, complete sequence 133595-133624 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP006989 Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence 379710-379739 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP020909 Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence 414699-414728 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 592933-592962 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NC_021908 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence 420735-420764 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP021126 Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence 386256-386285 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP013516 Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence 422480-422509 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 CP007642 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence 355372-355401 7 0.767
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 526457-526486 8 0.733
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP032828 Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence 277019-277048 8 0.733
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 NZ_CP023000 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence 1244590-1244619 8 0.733
CP027778_1 1.1|262327|30|CP027778|PILER-CR 262327-262356 30 MN036030 Leviviridae sp. isolate H4_Bulk_Litter_22_scaffold_5604 hypothetical protein (H4BulkLitter225604_000001) gene, partial cds; and RNA-dependent RNA polymerase (H4BulkLitter225604_000002) gene, complete cds 1764-1793 9 0.7

1. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP017947 (Bosea sp. Tri-49 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
ggttcatggtgatgatcgtcatggtttccc	Protospacer
 *******.******** ******** .* 

2. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 6, identity: 0.8

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tcttcctgatgatgatcgtcatggtgttcc	Protospacer
* *** *********** *******  ** 

3. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010590 (Phaeobacter gallaeciensis strain P11 plasmid pP11_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

4. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010611 (Phaeobacter inhibens strain P92 plasmid pP92_a, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

5. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP035422 (Leisingera sp. NJS204 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

6. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP021042 (Phaeobacter gallaeciensis strain P129 plasmid pP129_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

7. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP038240 (Leisingera sp. NJS201 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

8. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010675 (Phaeobacter gallaeciensis strain P75 plasmid pP75_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

9. spacer 1.1|262327|30|CP027778|PILER-CR matches to NC_023148 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_B134, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

10. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP021916 (Sagittula sp. P11 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

11. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010791 (Phaeobacter gallaeciensis strain P63 plasmid pP63_x_draft, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

12. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010870 (Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6001, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

13. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010631 (Phaeobacter inhibens strain P78 plasmid pP78_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

14. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010716 (Phaeobacter piscinae strain P18 plasmid pP18_a, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

15. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010658 (Phaeobacter piscinae strain P71 plasmid pP71_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

16. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010601 (Phaeobacter inhibens strain P83 plasmid pP83_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

17. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010619 (Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

18. spacer 1.1|262327|30|CP027778|PILER-CR matches to NC_009957 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI03, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

19. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010727 (Phaeobacter inhibens strain P88 plasmid pP88_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

20. spacer 1.1|262327|30|CP027778|PILER-CR matches to NC_009955 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI01, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

21. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010638 (Phaeobacter gallaeciensis strain P73 plasmid pP73_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

22. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010770 (Phaeobacter piscinae strain P13 plasmid pP13_c, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

23. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010707 (Phaeobacter inhibens strain P66 plasmid pP66_b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

24. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP014798 (Salipiger profundus strain JLT2016 plasmid pTPRO2, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

25. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP010662 (Phaeobacter inhibens strain P74 plasmid pP74_a, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
aaaacctgatgatgatcttcatgggtatct	Protospacer
 .  * ****************** **** 

26. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tgacaatgttgatgatcttcatggttgttc	Protospacer
** . *** *****************.*. 

27. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tgacaatgttgatgatcttcatggttgttc	Protospacer
** . *** *****************.*. 

28. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tcttcctgatgatgatcgtcatggtggccc	Protospacer
* *** *********** ******* ..* 

29. spacer 1.1|262327|30|CP027778|PILER-CR matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tgacaatgttgatgatcttcatggttgttc	Protospacer
** . *** *****************.*. 

30. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP021126 (Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tgacaatgttgatgatcttcatggttgttc	Protospacer
** . *** *****************.*. 

31. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tgacaatgttgatgatcttcatggttgttc	Protospacer
** . *** *****************.*. 

32. spacer 1.1|262327|30|CP027778|PILER-CR matches to CP007642 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence) position: , mismatch: 7, identity: 0.767

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tgacaatgttgatgatcttcatggttgttc	Protospacer
** . *** *****************.*. 

33. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tcttcctgatgatgatcgtcatggtggctc	Protospacer
* *** *********** ******* ... 

34. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
cgccaatgatgcttatcttcatggttattc	Protospacer
.*.. ****** * **************. 

35. spacer 1.1|262327|30|CP027778|PILER-CR matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 8, identity: 0.733

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
tggcgatgatgatgatcttcagggtttctt	Protospacer
** . **************** **** .. 

36. spacer 1.1|262327|30|CP027778|PILER-CR matches to MN036030 (Leviviridae sp. isolate H4_Bulk_Litter_22_scaffold_5604 hypothetical protein (H4BulkLitter225604_000001) gene, partial cds; and RNA-dependent RNA polymerase (H4BulkLitter225604_000002) gene, complete cds) position: , mismatch: 9, identity: 0.7

tgttcatgatgatgatcttcatggttatca	CRISPR spacer
ccgcccccatgatgatcttcatggtcatct	Protospacer
.  .* . *****************.*** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 435987 : 445570 7 Synechococcus_phage(42.86%) NA NA
DBSCAN-SWA_2 1950203 : 1969031 25 Clostridium_phage(90.0%) NA NA
DBSCAN-SWA_3 1978273 : 1992230 14 uncultured_Mediterranean_phage(37.5%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage