CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027472	Escherichia coli strain 2014C-3050 chromosome, complete genome	8 crisprs	NA	1	15	0	0
CP027473	Escherichia coli strain 2014C-3050 plasmid unnamed	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP027472_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027472_1

1193528-1193651

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027472_1

>merge|CP027472|1|1193528-1193651|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP027472|1|1|1193528-1193651|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027472_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027472_2

1861295-1861498

Orphan

Consensus_repeat	Method
TCTCCCCACTTTTACTCCCCACTTTTT	PILER-CR

2 spacers

The CRISPR arrays of CP027472_2

>merge|CP027472|2|1861295-1861498|PILER-CR
TCCCCACTACTCCCCACTTTTGCTCCCCACTTTTTGAAATTACCCACCGTCTCCCCACCTCTTTTTTTTTGTGATTCTAACGTGATGTTTTTCAATATATTTTTTACTCCCCACTTTTTTGGGTATATACAGGTGGGAAAGTGGGTAATTATGTTTCAATTTTGTTAAATTCCCCACTCTCCCCACTTTTACTCCCCACTTTTT

>CP027472|2|1|1861295-1861498|PILER-CR
TCCCCACTACTCCCCACTTTTGCTCCCCACTTTTTG	AAATTACCCACCGTCTCCCCACCTCTTTTTTTTTGTGATTCTAACGTGATGTTTTTCAATATATT
TTTTACTCCCCACTTTTTTGGGTATATACAGGTGGG	AAAGTGGGTAATTATGTTTCAATTTTGTTAAATTCCCCACTCTCCCCACTTTTACTCC
CCACTTTTT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027472_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027472_3

2143567-2143658

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027472_3

>merge|CP027472|3|2143567-2143658|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>CP027472|3|2|2143567-2143658|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027472_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027472_4

2630946-2631090

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027472_4

>merge|CP027472|4|2630946-2631090|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>CP027472|4|3|2630946-2631090|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027472_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027472_5

3475445-3475577

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of CP027472_5

>merge|CP027472|5|3475445-3475577|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACATCGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>CP027472|5|2|3475445-3475577|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTC
CTCACCAATATTGAAAA	CATCGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027472_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027472_6

5089006-5089123

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027472_6

>merge|CP027472|6|5089006-5089123|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>CP027472|6|4|5089006-5089123|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027472_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027472_7

5486154-5486792

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GNGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
TCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

10 spacers

The CRISPR arrays of CP027472_7

>merge|CP027472|7|5486154-5486792|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGATCTCCTCATCCTCCCAGCTACCGACAGTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAGATCTGCCGCGAGTGGTTTCACCCGGCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGATATTTGGGCGTAATACCGCCCGGATAGTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGTACGGAACATGCTGTCTATATTTCGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTGGAGCCGCCGCGAATTTACACACGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGAGCTCCCCGCGCCAGCGGGGATAAACCGTTCTTGCGGGTGTTGCAAATATTCTTCACGTAGAGCTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGCTCCCCGCGCCAGCGGGGATAAACCA

>CP027472|7|5|5486154-5486792|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTCCTCATCCTCCCAGCTACCGACAGTAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAGATCTGCCGCGAGTGGTTTCACCCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATATTTGGGCGTAATACCGCCCGGATAGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTACGGAACATGCTGTCTATATTTCGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGAGCCGCCGCGAATTTACACACGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC
GAGCTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGCGGGTGTTGCAAATATTCTTCACGTA
GAGCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGCTCCCCGCGCCAGCGGGGATAAACCA

>CP027472|7|1|5486154-5486792|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTCCTCATCCTCCCAGCTACCGACAGTAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAGATCTGCCGCGAGTGGTTTCACCCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATATTTGGGCGTAATACCGCCCGGATAGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTACGGAACATGCTGTCTATATTTCGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGAGCCGCCGCGAATTTACACACGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC
GAGCTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGCGGGTGTTGCAAATATTCTTCACGTA
GAGCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGCTCCCCGCGCCAGCGGGGATAAACCA

>CP027472|7|3|5486158-5486792|PILER-CR
TCCCCGCGCCAGCGGGGATAAACCG	ATCTCCTCATCCTCCCAGCTACCGACAGTAGTGTGT
TCCCCGCGCCAGCGGGGATAAACCG	CAAGATCTGCCGCGAGTGGTTTCACCCGGCAGGTGT
TCCCCGCGCCAGCGGGGATAAACCG	GATATTTGGGCGTAATACCGCCCGGATAGTGTGTGT
TCCCCGCGCCAGCGGGGATAAACCG	TGGTACGGAACATGCTGTCTATATTTCGACCAGTGT
TCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGAGCCGCCGCGAATTTACACACGATTGTGT
TCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGAGC
TCCCCGCGCCAGCGGGGATAAACCG	TTCTTGCGGGTGTTGCAAATATTCTTCACGTAGAGC
TCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGT
TCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGT
TCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGC
TCCCCGCGCCAGCGGGGATAAACCA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027472_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027472_8

5512495-5513010

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

The CRISPR arrays of CP027472_8

>merge|CP027472|8|5512495-5513010|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAAAACCGACAGGTTCACTTACCCGGCCCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCATGGCCTGACGAAGCTCGTAATATTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAGGCCGCAGAACGCCGTGATATTGCGTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAACTGAATCATCATTGATTACCCGCGAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGACATAAAAACGTCCGGAGGCGCGTACTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGATCAGGTAATCGAGACACCTGTCAGCACTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCTATTGCCGGTAGTGTCGCTGATAGACTCGTGTTCCCGCGCCAGCGGGGATAAACCGCGGCTATGGAATTTATGGAGAAGTTTGGTTTTGTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP027472|8|4|5512495-5513010|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAACCGACAGGTTCACTTACCCGGCCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCATGGCCTGACGAAGCTCGTAATATTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGGCCGCAGAACGCCGTGATATTGCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACTGAATCATCATTGATTACCCGCGAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACATAAAAACGTCCGGAGGCGCGTACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCAGGTAATCGAGACACCTGTCAGCACTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCTATTGCCGGTAGTGTCGCTGATAGACTCGTGTT
CCCGCGCCAGCGGGGATAAACCGCGGCTA	TGGAATTTATGGAGAAGTTTGGTTTTGTGTTC
CCCGCGTCAGCGGGGATAAACCG

>CP027472|8|6|5512495-5513010|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAACCGACAGGTTCACTTACCCGGCCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCATGGCCTGACGAAGCTCGTAATATTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGGCCGCAGAACGCCGTGATATTGCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACTGAATCATCATTGATTACCCGCGAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACATAAAAACGTCCGGAGGCGCGTACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCAGGTAATCGAGACACCTGTCAGCACTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCTATTGCCGGTAGTGTCGCTGATAGACT
CGTGTTCCCGCGCCAGCGGGGATAAACCG	CGGCTATGGAATTTATGGAGAAGTTTGGTTTT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP027472|8|2|5512495-5513010|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAACCGACAGGTTCACTTACCCGGCCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCATGGCCTGACGAAGCTCGTAATATTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGGCCGCAGAACGCCGTGATATTGCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACTGAATCATCATTGATTACCCGCGAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACATAAAAACGTCCGGAGGCGCGTACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCAGGTAATCGAGACACCTGTCAGCACTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCTATTGCCGGTAGTGTCGCTGATAGACT
CGTGTTCCCGCGCCAGCGGGGATAAACCG	CGGCTATGGAATTTATGGAGAAGTTTGGTTTT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027472_2	2.2\|1861432\|58\|CP027472\|PILER-CR	1861432-1861489	58	CP027472.1	514087-514144	0	1.0

1. spacer 2.2|1861432|58|CP027472|PILER-CR matches to position: 514087-514144, mismatch: 0, identity: 1.0

tgggtatatacaggtgggaaagtgggtaattatgtttcaattttgttaaattccccac	CRISPR spacer
tgggtatatacaggtgggaaagtgggtaattatgtttcaattttgttaaattccccac	Protospacer
**********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027472_3	3.1\|2143593\|40\|CP027472\|CRISPRCasFinder	2143593-2143632	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP027472_5	5.1\|3475462\|42\|CP027472\|PILER-CR	3475462-3475503	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	0	1.0
CP027472_1	1.1\|1193571\|38\|CP027472\|CRISPRCasFinder	1193571-1193608	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP027472_5	5.2\|3475521\|40\|CP027472\|PILER-CR	3475521-3475560	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	2	0.95
CP027472_8	8.8\|5512956\|32\|CP027472\|PILER-CR	5512956-5512987	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
CP027472_8	8.10\|5512950\|32\|CP027472\|CRISPRCasFinder,CRT	5512950-5512981	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
CP027472_7	7.10\|5486732\|32\|CP027472\|CRISPRCasFinder,CRT	5486732-5486763	32	KR080197	Mycobacterium phage FlagStaff, complete genome	15476-15507	7	0.781
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NC_012852	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence	256608-256639	8	0.75
CP027472_7	7.8\|5486610\|32\|CP027472\|CRISPRCasFinder,CRT	5486610-5486641	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
CP027472_7	7.9\|5486671\|32\|CP027472\|CRISPRCasFinder,CRT	5486671-5486702	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
CP027472_7	7.10\|5486732\|32\|CP027472\|CRISPRCasFinder,CRT	5486732-5486763	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15449	8	0.75
CP027472_8	8.4\|5512707\|32\|CP027472\|PILER-CR,CRISPRCasFinder,CRT	5512707-5512738	32	NZ_CP030355	Novosphingobium sp. P6W plasmid pP6W2, complete sequence	141173-141204	8	0.75
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	196778-196809	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP050101	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence	151768-151799	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	508685-508716	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP025016	Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence	133778-133809	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NC_008379	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence	180274-180305	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	151061-151092	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	21422-21453	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	499023-499054	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	106143-106174	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	508869-508900	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP048283	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence	130036-130067	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	172635-172666	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP022668	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence	387130-387161	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	4795-4826	9	0.719
CP027472_7	7.1\|5486183\|32\|CP027472\|CRISPRCasFinder,CRT	5486183-5486214	32	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	158950-158981	9	0.719
CP027472_7	7.6\|5486488\|32\|CP027472\|CRISPRCasFinder,CRT	5486488-5486519	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224876-224907	9	0.719
CP027472_7	7.10\|5486732\|32\|CP027472\|CRISPRCasFinder,CRT	5486732-5486763	32	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139210-139241	9	0.719
CP027472_8	8.3\|5512646\|32\|CP027472\|PILER-CR,CRISPRCasFinder,CRT	5512646-5512677	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	292180-292211	9	0.719
CP027472_8	8.3\|5512646\|32\|CP027472\|PILER-CR,CRISPRCasFinder,CRT	5512646-5512677	32	NZ_CP020740	[Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence	20747-20778	9	0.719
CP027472_8	8.6\|5512829\|32\|CP027472\|PILER-CR,CRISPRCasFinder,CRT	5512829-5512860	32	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	32377-32408	9	0.719
CP027472_7	7.10\|5486732\|32\|CP027472\|CRISPRCasFinder,CRT	5486732-5486763	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	14130-14161	10	0.688
CP027472_8	8.2\|5512585\|32\|CP027472\|PILER-CR,CRISPRCasFinder,CRT	5512585-5512616	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	903982-904013	10	0.688
CP027472_8	8.4\|5512707\|32\|CP027472\|PILER-CR,CRISPRCasFinder,CRT	5512707-5512738	32	MF417892	Uncultured Caudovirales phage clone 2F_2, partial genome	39822-39853	10	0.688
CP027472_8	8.2\|5512585\|32\|CP027472\|PILER-CR,CRISPRCasFinder,CRT	5512585-5512616	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1467285-1467316	11	0.656

1. spacer 3.1|2143593|40|CP027472|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 5.1|3475462|42|CP027472|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 1.1|1193571|38|CP027472|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 5.2|3475521|40|CP027472|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catcgcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
*** ****** *****************************

5. spacer 8.8|5512956|32|CP027472|PILER-CR matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cggctatggaatttatggagaagtttggtttt	CRISPR spacer
ctcctatggaatttatgcagaagtttagtaat	Protospacer
*  ************** ********.**  *

6. spacer 8.10|5512950|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cggctatggaatttatggagaagtttggtttt	CRISPR spacer
ctcctatggaatttatgcagaagtttagtaat	Protospacer
*  ************** ********.**  *

7. spacer 7.10|5486732|32|CP027472|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gacgccggcgccgcgatgccgttcgccgggtt	Protospacer
******* ******** ******. * . ***

8. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NC_012852 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence) position: , mismatch: 8, identity: 0.75

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcacc	Protospacer
**...*********** *** *******.* .

9. spacer 7.8|5486610|32|CP027472|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

10. spacer 7.9|5486671|32|CP027472|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

11. spacer 7.10|5486732|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gtcgccgccgccgcgcagccctttccacagcc	Protospacer
* ************* **** *****.  *..

12. spacer 8.4|5512707|32|CP027472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030355 (Novosphingobium sp. P6W plasmid pP6W2, complete sequence) position: , mismatch: 8, identity: 0.75

gaaactgaatcatcattgattacccgcgaaga	CRISPR spacer
aattcacgatcatctttgattatccgcgaaga	Protospacer
.*  *  .****** *******.*********

13. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

14. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP050101 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

15. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

16. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP025016 (Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

17. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NC_008379 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

18. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

19. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

20. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

21. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

22. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

23. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP048283 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

24. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

25. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

26. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

27. spacer 7.1|5486183|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

28. spacer 7.6|5486488|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taaggccgtcgccggatcagcctggctatgcc	CRISPR spacer
cggggccgtcgccggatcagccggtctgctgc	Protospacer
...******************* * **..  *

29. spacer 7.10|5486732|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gaagccgccgccgcgaacccgtttttcccggg	Protospacer
** ************** ******..  .*

30. spacer 8.3|5512646|32|CP027472|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaggccgcagaacgccgtgatattgcgttc	CRISPR spacer
gcggcgccgaaaaacgccgtgatattgccgat	Protospacer
 **. **** *.****************   .

31. spacer 8.3|5512646|32|CP027472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaggccgcagaacgccgtgatattgcgttc	CRISPR spacer
gcggcgccgaagaacgccgtgatgttgccggt	Protospacer
 **. **** *************.****   .

32. spacer 8.6|5512829|32|CP027472|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

atcaggtaatcgagacacctgtcagcactctc	CRISPR spacer
ccaaggtaatcgagagacctgccagcaaagcc	Protospacer
 . ************ *****.*****   .*

33. spacer 7.10|5486732|32|CP027472|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
ttgcccgccgcggcgaagccgcttccgtcctc	Protospacer
    ******* *********.***** . *.

34. spacer 8.2|5512585|32|CP027472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
gcgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
*. **** ***************.**..   .

35. spacer 8.4|5512707|32|CP027472|PILER-CR,CRISPRCasFinder,CRT matches to MF417892 (Uncultured Caudovirales phage clone 2F_2, partial genome) position: , mismatch: 10, identity: 0.688

gaaactgaatcatcattgattacccgcgaaga	CRISPR spacer
tgggctgcatcatcattgattacctgcaactg	Protospacer
 ...*** ****************.**.*  .

36. spacer 8.2|5512585|32|CP027472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
ccgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
 . **** ***************.**..   .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027472

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection