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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP027372 Escherichia coli strain 2015C-3905 plasmid unnamed 0 crisprs NA 0 0 0 0
CP027371 Escherichia coli strain 2015C-3905 chromosome, complete genome 5 crisprs NA 0 22 0 0

Results visualization

1. CP027371
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027371_1 878018-878885 Orphan I-F
14 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027371_2 2198804-2198937 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027371_3 2900229-2900806 Orphan I-E
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027371_4 2926505-2926899 Orphan I-E
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027371_5 4844527-4844642 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP027371_3 3.1|2900258|32|CP027371|CRT 2900258-2900289 32 LC542972 Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence 246937-246968 3 0.906
CP027371_4 4.6|2926839|32|CP027371|CRISPRCasFinder 2926839-2926870 32 LR134281 Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6 1431-1462 4 0.875
CP027371_2 2.1|2198842|58|CP027371|CRISPRCasFinder 2198842-2198899 58 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 104-161 5 0.914
CP027371_4 4.3|2926656|32|CP027371|CRISPRCasFinder 2926656-2926687 32 MT361768 Ralstonia phage RPZH6, complete genome 23375-23406 5 0.844
CP027371_4 4.3|2926656|32|CP027371|CRISPRCasFinder 2926656-2926687 32 MT361768 Ralstonia phage RPZH6, complete genome 24213-24244 5 0.844
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_CP034578 Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08E, complete sequence 2106-2137 6 0.812
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_AP017930 Lactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 plasmid pLs13-a, complete sequence 4021-4052 6 0.812
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_CP043525 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_01, complete sequence 3312-3343 6 0.812
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_CP014889 Lactobacillus backii strain TMW 1.1991 plasmid pL11991-8, complete sequence 1082-1113 6 0.812
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NC_015860 Lactococcus lactis subsp. lactis plasmid pIL1, complete sequence 3081-3112 6 0.812
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_AP022342 Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence 143632-143663 6 0.812
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_CP044372 Klebsiella pneumoniae strain 2018C01-046 plasmid p2018C01-046-4, complete sequence 5474-5505 6 0.812
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_MG674581 Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence 148696-148727 6 0.812
CP027371_3 3.8|2900685|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900685-2900716 32 NZ_CP041426 Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence 15256-15287 6 0.812
CP027371_4 4.3|2926656|32|CP027371|CRISPRCasFinder 2926656-2926687 32 MT740736 Ralstonia phage Eline, complete genome 499-530 6 0.812
CP027371_4 4.3|2926656|32|CP027371|CRISPRCasFinder 2926656-2926687 32 MT740739 Ralstonia phage Gerry, complete genome 48442-48473 6 0.812
CP027371_4 4.9|2926654|34|CP027371|CRT 2926654-2926687 34 MT361768 Ralstonia phage RPZH6, complete genome 23373-23406 6 0.824
CP027371_4 4.9|2926654|34|CP027371|CRT 2926654-2926687 34 MT361768 Ralstonia phage RPZH6, complete genome 24211-24244 6 0.824
CP027371_4 4.15|2926655|34|CP027371|PILER-CR 2926655-2926688 34 MT361768 Ralstonia phage RPZH6, complete genome 23373-23406 6 0.824
CP027371_4 4.15|2926655|34|CP027371|PILER-CR 2926655-2926688 34 MT361768 Ralstonia phage RPZH6, complete genome 24211-24244 6 0.824
CP027371_1 1.4|878226|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878226-878257 32 NZ_CP032893 Enterobacter kobei strain WCHEK045523 plasmid p1_045523, complete sequence 14694-14725 7 0.781
CP027371_3 3.1|2900258|32|CP027371|CRT 2900258-2900289 32 NZ_CP015038 Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence 112768-112799 7 0.781
CP027371_3 3.2|2900319|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900319-2900350 32 NC_030948 Ralstonia phage RSP15 DNA, complete genome 100984-101015 7 0.781
CP027371_3 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900502-2900533 32 CP022460 Shigella sonnei strain 2015C-3807 plasmid unnamed1, complete sequence 32099-32130 7 0.781
CP027371_3 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900502-2900533 32 NZ_CP015232 Epibacterium mobile F1926 plasmid unnamed2, complete sequence 112025-112056 7 0.781
CP027371_3 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900502-2900533 32 NZ_LR027555 Epibacterium mobile isolate EPIB1 plasmid 3, complete sequence 90457-90488 7 0.781
CP027371_4 4.1|2926534|32|CP027371|CRISPRCasFinder 2926534-2926565 32 KR080197 Mycobacterium phage FlagStaff, complete genome 15476-15507 7 0.781
CP027371_4 4.9|2926654|34|CP027371|CRT 2926654-2926687 34 MT740736 Ralstonia phage Eline, complete genome 499-532 7 0.794
CP027371_4 4.9|2926654|34|CP027371|CRT 2926654-2926687 34 MT740739 Ralstonia phage Gerry, complete genome 48442-48475 7 0.794
CP027371_4 4.15|2926655|34|CP027371|PILER-CR 2926655-2926688 34 MT740736 Ralstonia phage Eline, complete genome 499-532 7 0.794
CP027371_4 4.15|2926655|34|CP027371|PILER-CR 2926655-2926688 34 MT740739 Ralstonia phage Gerry, complete genome 48442-48475 7 0.794
CP027371_1 1.2|878106|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878106-878137 32 NC_021067 Vibrio phage helene 12B3 genomic sequence 11083-11114 8 0.75
CP027371_1 1.6|878346|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878346-878377 32 NC_015583 Novosphingobium sp. PP1Y plasmid Mpl, complete sequence 1097936-1097967 8 0.75
CP027371_1 1.8|878466|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878466-878497 32 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 228610-228641 8 0.75
CP027371_1 1.12|878706|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878706-878737 32 NZ_LR134457 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 15, complete sequence 34172-34203 8 0.75
CP027371_1 1.13|878766|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878766-878797 32 NZ_LR134456 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence 209791-209822 8 0.75
CP027371_3 3.1|2900258|32|CP027371|CRT 2900258-2900289 32 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1428097-1428128 8 0.75
CP027371_3 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900502-2900533 32 NZ_CP013856 Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence 81256-81287 8 0.75
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 MK064565 Sulfolobales Beppu rod-shaped virus 1 clone D, complete genome 8044-8075 8 0.75
CP027371_3 3.9|2900746|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900746-2900777 32 NZ_KY515226 Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence 9271-9302 8 0.75
CP027371_4 4.1|2926534|32|CP027371|CRISPRCasFinder 2926534-2926565 32 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15449 8 0.75
CP027371_1 1.2|878106|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878106-878137 32 NZ_CP050092 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence 439300-439331 9 0.719
CP027371_1 1.11|878646|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878646-878677 32 NZ_CP045307 Legionella longbeachae strain B41211CHC plasmid pB41211CHC_76k, complete sequence 65108-65139 9 0.719
CP027371_1 1.12|878706|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878706-878737 32 NZ_CP016485 Synechococcus sp. PCC 8807 plasmid unnamed2, complete sequence 2910-2941 9 0.719
CP027371_3 3.1|2900258|32|CP027371|CRT 2900258-2900289 32 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 141278-141309 9 0.719
CP027371_3 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900502-2900533 32 NZ_CP010647 Phaeobacter piscinae strain P36 plasmid pP36_d, complete sequence 70883-70914 9 0.719
CP027371_3 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900502-2900533 32 NZ_LN907828 Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence 312646-312677 9 0.719
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 145876-145907 9 0.719
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 156592-156623 9 0.719
CP027371_3 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900624-2900655 32 MN694366 Marine virus AFVG_250M1050, complete genome 2162-2193 9 0.719
CP027371_4 4.1|2926534|32|CP027371|CRISPRCasFinder 2926534-2926565 32 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139210-139241 9 0.719
CP027371_4 4.6|2926839|32|CP027371|CRISPRCasFinder 2926839-2926870 32 MK448935 Streptococcus phage Javan424, complete genome 17153-17184 9 0.719
CP027371_4 4.6|2926839|32|CP027371|CRISPRCasFinder 2926839-2926870 32 MK448936 Streptococcus phage Javan426, complete genome 17153-17184 9 0.719
CP027371_1 1.13|878766|32|CP027371|PILER-CR,CRISPRCasFinder,CRT 878766-878797 32 NZ_LR134451 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence 148490-148521 10 0.688
CP027371_3 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900502-2900533 32 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 699305-699336 10 0.688
CP027371_3 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder 2900502-2900533 32 NC_015724 Cupriavidus necator N-1 plasmid pBB2, complete sequence 169020-169051 10 0.688
CP027371_4 4.1|2926534|32|CP027371|CRISPRCasFinder 2926534-2926565 32 NZ_CP012383 Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence 14130-14161 10 0.688
CP027371_4 4.4|2926717|32|CP027371|CRISPRCasFinder 2926717-2926748 32 NZ_CP022424 Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence 187136-187167 10 0.688
CP027371_4 4.7|2926532|34|CP027371|CRT 2926532-2926565 34 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15451 10 0.706
CP027371_4 4.13|2926533|34|CP027371|PILER-CR 2926533-2926566 34 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15451 10 0.706
CP027371_2 2.1|2198842|58|CP027371|CRISPRCasFinder 2198842-2198899 58 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7432-7489 11 0.81
CP027371_2 2.1|2198842|58|CP027371|CRISPRCasFinder 2198842-2198899 58 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84256-84313 11 0.81
CP027371_4 4.7|2926532|34|CP027371|CRT 2926532-2926565 34 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139208-139241 11 0.676
CP027371_4 4.13|2926533|34|CP027371|PILER-CR 2926533-2926566 34 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139208-139241 11 0.676

1. spacer 3.1|2900258|32|CP027371|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

2. spacer 4.6|2926839|32|CP027371|CRISPRCasFinder matches to LR134281 (Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6) position: , mismatch: 4, identity: 0.875

caagccgggatttgctttcggccagttggtct	CRISPR spacer
cagaccgggatttgctttcggccagtttgcct	Protospacer
**..*********************** *.**

3. spacer 2.1|2198842|58|CP027371|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 5, identity: 0.914

agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattcag	CRISPR spacer
agacccgagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgatcgt	Protospacer
*********************** ****************************. **. 

4. spacer 4.3|2926656|32|CP027371|CRISPRCasFinder matches to MT361768 (Ralstonia phage RPZH6, complete genome) position: , mismatch: 5, identity: 0.844

agagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
gtggaacgccgcactgatccacatcgcgtagg	Protospacer
. .****** ******************** *

5. spacer 4.3|2926656|32|CP027371|CRISPRCasFinder matches to MT361768 (Ralstonia phage RPZH6, complete genome) position: , mismatch: 5, identity: 0.844

agagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
gtggaacgccgcactgatccacatcgcgtagg	Protospacer
. .****** ******************** *

6. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034578 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08E, complete sequence) position: , mismatch: 6, identity: 0.812

-tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
attcatc-aaattttttccaatttattttttta	Protospacer
 *  *** **** *********.*********.

7. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP017930 (Lactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 plasmid pLs13-a, complete sequence) position: , mismatch: 6, identity: 0.812

-tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
attcatc-aaattttttccaatttattttttta	Protospacer
 *  *** **** *********.*********.

8. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP043525 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_01, complete sequence) position: , mismatch: 6, identity: 0.812

-tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
attcatc-aaattttttccaatttattttttta	Protospacer
 *  *** **** *********.*********.

9. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014889 (Lactobacillus backii strain TMW 1.1991 plasmid pL11991-8, complete sequence) position: , mismatch: 6, identity: 0.812

-tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
attcatc-aaattttttccaatttattttttta	Protospacer
 *  *** **** *********.*********.

10. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NC_015860 (Lactococcus lactis subsp. lactis plasmid pIL1, complete sequence) position: , mismatch: 6, identity: 0.812

-tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
attcatc-aaattttttccaatttattttttta	Protospacer
 *  *** **** *********.*********.

11. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 6, identity: 0.812

-tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
attcatc-aaattttttccaatttattttttta	Protospacer
 *  *** **** *********.*********.

12. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044372 (Klebsiella pneumoniae strain 2018C01-046 plasmid p2018C01-046-4, complete sequence) position: , mismatch: 6, identity: 0.812

-tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
attcatc-aaattttttccaatttattttttta	Protospacer
 *  *** **** *********.*********.

13. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG674581 (Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence) position: , mismatch: 6, identity: 0.812

-tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
attcatc-aaattttttccaatttattttttta	Protospacer
 *  *** **** *********.*********.

14. spacer 3.8|2900685|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041426 (Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence) position: , mismatch: 6, identity: 0.812

tttatcgtcgcatgaatcgcggtatccatatt	CRISPR spacer
ctggttgtcacatgaatcacggtatccatatt	Protospacer
.* .*.***.********.*************

15. spacer 4.3|2926656|32|CP027371|CRISPRCasFinder matches to MT740736 (Ralstonia phage Eline, complete genome) position: , mismatch: 6, identity: 0.812

agagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
gtggaatgcggcgctgatccacatcgcgtagg	Protospacer
. .***.*****.***************** *

16. spacer 4.3|2926656|32|CP027371|CRISPRCasFinder matches to MT740739 (Ralstonia phage Gerry, complete genome) position: , mismatch: 6, identity: 0.812

agagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
gtggaatgcggcgctgatccacatcgcgtagg	Protospacer
. .***.*****.***************** *

17. spacer 4.9|2926654|34|CP027371|CRT matches to MT361768 (Ralstonia phage RPZH6, complete genome) position: , mismatch: 6, identity: 0.824

acagagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
aggtggaacgccgcactgatccacatcgcgtagg	Protospacer
* . .****** ******************** *

18. spacer 4.9|2926654|34|CP027371|CRT matches to MT361768 (Ralstonia phage RPZH6, complete genome) position: , mismatch: 6, identity: 0.824

acagagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
aggtggaacgccgcactgatccacatcgcgtagg	Protospacer
* . .****** ******************** *

19. spacer 4.15|2926655|34|CP027371|PILER-CR matches to MT361768 (Ralstonia phage RPZH6, complete genome) position: , mismatch: 6, identity: 0.824

acagagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
aggtggaacgccgcactgatccacatcgcgtagg	Protospacer
* . .****** ******************** *

20. spacer 4.15|2926655|34|CP027371|PILER-CR matches to MT361768 (Ralstonia phage RPZH6, complete genome) position: , mismatch: 6, identity: 0.824

acagagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
aggtggaacgccgcactgatccacatcgcgtagg	Protospacer
* . .****** ******************** *

21. spacer 1.4|878226|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032893 (Enterobacter kobei strain WCHEK045523 plasmid p1_045523, complete sequence) position: , mismatch: 7, identity: 0.781

tgccagatatttcagatcatgaacggttgcgc	CRISPR spacer
agccagatatttcagatcataaatggtcgaag	Protospacer
 *******************.**.***.* . 

22. spacer 3.1|2900258|32|CP027371|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

23. spacer 3.2|2900319|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NC_030948 (Ralstonia phage RSP15 DNA, complete genome) position: , mismatch: 7, identity: 0.781

tgcaaaacaaaactgtattgatcgcgttttgt	CRISPR spacer
tgaagaacaaaactgtattgatcttctttcgg	Protospacer
** *.****************** . ***.* 

24. spacer 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to CP022460 (Shigella sonnei strain 2015C-3807 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tgcataccgtgccagcgccagtgcggcgcggc	CRISPR spacer
catcgaccgcgccagcgccagtgcggcgcggt	Protospacer
...  ****.*********************.

25. spacer 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015232 (Epibacterium mobile F1926 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tgcataccgtgccagcgccagtgcggcgcggc	CRISPR spacer
ccgagaccgtgccagcgcctttgcggcgcgcc	Protospacer
.  * **************  ********* *

26. spacer 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR027555 (Epibacterium mobile isolate EPIB1 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.781

tgcataccgtgccagcgccagtgcggcgcggc	CRISPR spacer
ccgagaccgtgccagcgcctttgcggcgcgcc	Protospacer
.  * **************  ********* *

27. spacer 4.1|2926534|32|CP027371|CRISPRCasFinder matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
aacccggcgaacggcatcgcggcgccggcgtc	Protospacer
*** . * .****** ******** *******

28. spacer 4.9|2926654|34|CP027371|CRT matches to MT740736 (Ralstonia phage Eline, complete genome) position: , mismatch: 7, identity: 0.794

acagagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
aggtggaatgcggcgctgatccacatcgcgtagg	Protospacer
* . .***.*****.***************** *

29. spacer 4.9|2926654|34|CP027371|CRT matches to MT740739 (Ralstonia phage Gerry, complete genome) position: , mismatch: 7, identity: 0.794

acagagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
aggtggaatgcggcgctgatccacatcgcgtagg	Protospacer
* . .***.*****.***************** *

30. spacer 4.15|2926655|34|CP027371|PILER-CR matches to MT740736 (Ralstonia phage Eline, complete genome) position: , mismatch: 7, identity: 0.794

acagagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
aggtggaatgcggcgctgatccacatcgcgtagg	Protospacer
* . .***.*****.***************** *

31. spacer 4.15|2926655|34|CP027371|PILER-CR matches to MT740739 (Ralstonia phage Gerry, complete genome) position: , mismatch: 7, identity: 0.794

acagagaacgcggcactgatccacatcgcgtacg	CRISPR spacer
aggtggaatgcggcgctgatccacatcgcgtagg	Protospacer
* . .***.*****.***************** *

32. spacer 1.2|878106|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NC_021067 (Vibrio phage helene 12B3 genomic sequence) position: , mismatch: 8, identity: 0.75

cggcagaaaaaccggtcgcgctaatggagaaa	CRISPR spacer
caacccaaaaaccagtcgctctaatggagtac	Protospacer
*..*  *******.***** ********* * 

33. spacer 1.6|878346|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 8, identity: 0.75

gtcatcggtatcgtcacgcgcaagggattcaa--	CRISPR spacer
ctcatcggtgtcgtcacgagcaa--gatcgcacc	Protospacer
 ********.******** ****  ***.  *  

34. spacer 1.8|878466|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgtagggcacacccttacggcagttaaaa	CRISPR spacer
catgatagggcacaccattacggtagtttgga	Protospacer
 ** .*********** ******.**** ..*

35. spacer 1.12|878706|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134457 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 15, complete sequence) position: , mismatch: 8, identity: 0.75

tgaacgcgatccgggcgattcgggagttttcg	CRISPR spacer
cggcggcgatccgggcgattcggaggttcacg	Protospacer
.*.  ******************..***. **

36. spacer 1.13|878766|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaccgagtgggtgctcgtgctgaatgaact	CRISPR spacer
ctcaccgagtaggtgctggtgctgagagtgcc	Protospacer
.*********.****** *******. * .*.

37. spacer 3.1|2900258|32|CP027371|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

38. spacer 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013856 (Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence) position: , mismatch: 8, identity: 0.75

tgcataccgtgccagcgccagtgcggcgcggc	CRISPR spacer
cacgaacagtgtcagcgccagtgcggcgacgc	Protospacer
..*. ** ***.****************  **

39. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to MK064565 (Sulfolobales Beppu rod-shaped virus 1 clone D, complete genome) position: , mismatch: 8, identity: 0.75

---tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
aattaaa---aaatgttttccagtctcttttttgt	Protospacer
   *.**   ************.*** ******  

40. spacer 3.9|2900746|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 8, identity: 0.75

gtccatcattgccttgttgatatacacaacgc	CRISPR spacer
atcgcatactgccttgttggtatagacaacgc	Protospacer
.**   .*.**********.**** *******

41. spacer 4.1|2926534|32|CP027371|CRISPRCasFinder matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggctgtggaaagggctgcgcggcggcggcgac	Protospacer
..*  .***** **** ************* *

42. spacer 1.2|878106|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 9, identity: 0.719

cggcagaaaaaccggtcgcgctaatggagaaa	CRISPR spacer
tgcgccaaaaaccgggcgcgcgaatggagatt	Protospacer
.*    ********* ***** ********  

43. spacer 1.11|878646|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045307 (Legionella longbeachae strain B41211CHC plasmid pB41211CHC_76k, complete sequence) position: , mismatch: 9, identity: 0.719

tggcatgcaatcactacagctattaatttcta	CRISPR spacer
gtaaaagacatcaatacaactattaatttcta	Protospacer
  . * *  **** ****.*************

44. spacer 1.12|878706|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016485 (Synechococcus sp. PCC 8807 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgaacgcgatccgggcgattcgg-----gagttttcg	CRISPR spacer
tgatcgcgatccgggcgatccggccaatggat-----	Protospacer
*** ***************.***     *..*     

45. spacer 3.1|2900258|32|CP027371|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

46. spacer 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010647 (Phaeobacter piscinae strain P36 plasmid pP36_d, complete sequence) position: , mismatch: 9, identity: 0.719

tgcataccgtgccagcgccagtgcggcgcggc	CRISPR spacer
cttgcagcctgccagcgccagggcggcgcagc	Protospacer
. ...* * ************ *******.**

47. spacer 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 9, identity: 0.719

tgcataccgtgccagcgccagtgcggcgcggc	CRISPR spacer
tacgcctgctgccagcgccagtgctgcgccgc	Protospacer
*.*.. .  *************** **** **

48. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 9, identity: 0.719

tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
gtcttctaaatgttttataatctattttatct	Protospacer
    ************ .********** *. 

49. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 9, identity: 0.719

tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
gtcttctaaatgttttataatctattttatct	Protospacer
    ************ .********** *. 

50. spacer 3.7|2900624|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to MN694366 (Marine virus AFVG_250M1050, complete genome) position: , mismatch: 9, identity: 0.719

tgaatctaaatgttttccaatctatttttttg	CRISPR spacer
ttgccttttatgtgttcaaatctatttttttg	Protospacer
* . ..*  **** *** **************

51. spacer 4.1|2926534|32|CP027371|CRISPRCasFinder matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
cccgggaaaaacgggttcgcggcggcggcttc	Protospacer
  *.  ..****** ************** **

52. spacer 4.6|2926839|32|CP027371|CRISPRCasFinder matches to MK448935 (Streptococcus phage Javan424, complete genome) position: , mismatch: 9, identity: 0.719

caagccgggatttgctttcggccagttggtct	CRISPR spacer
aagtgagggattagctttcagccagttggctt	Protospacer
 *.   ****** ******.*********..*

53. spacer 4.6|2926839|32|CP027371|CRISPRCasFinder matches to MK448936 (Streptococcus phage Javan426, complete genome) position: , mismatch: 9, identity: 0.719

caagccgggatttgctttcggccagttggtct	CRISPR spacer
aagtgagggattagctttcagccagttggctt	Protospacer
 *.   ****** ******.*********..*

54. spacer 1.13|878766|32|CP027371|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 10, identity: 0.688

ttcaccgagtgggtgctcgtgctgaatgaact	CRISPR spacer
ctcacggagtgggtgctcgggctgtcgggggc	Protospacer
.**** ************* ****   *.. .

55. spacer 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcataccgtgccagcgccagtgcggcgcggc	CRISPR spacer
ctcgctgcgtgccaccgccagttcggcgcgca	Protospacer
. *..  ******* ******* *******  

56. spacer 3.5|2900502|32|CP027371|CRT,PILER-CR,CRISPRCasFinder matches to NC_015724 (Cupriavidus necator N-1 plasmid pBB2, complete sequence) position: , mismatch: 10, identity: 0.688

tgcataccgtgccagcgccagtgcggcgcggc	CRISPR spacer
ctcgctgcgtgccaccgccagttcggcgcgca	Protospacer
. *..  ******* ******* *******  

57. spacer 4.1|2926534|32|CP027371|CRISPRCasFinder matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
gaggacggaagcggcttcgccgcggcgggcaa	Protospacer
.* . *****.********* *******    

58. spacer 4.4|2926717|32|CP027371|CRISPRCasFinder matches to NZ_CP022424 (Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence) position: , mismatch: 10, identity: 0.688

tcagccaagttttgcgcccggcgcaagtagcg	CRISPR spacer
cccaccaagctttgcgccaggcgcaagcgcaa	Protospacer
.* .*****.******** ********..  .

59. spacer 4.7|2926532|34|CP027371|CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggggctgtggaaagggctgcgcggcggcggcgac	Protospacer
  ..*  .***** **** ************* *

60. spacer 4.13|2926533|34|CP027371|PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggggctgtggaaagggctgcgcggcggcggcgac	Protospacer
  ..*  .***** **** ************* *

61. spacer 2.1|2198842|58|CP027371|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 11, identity: 0.81

---agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattca	CRISPR spacer
acaaaact---gcactcaaccgtaggccggataaggcgttcacgccgcatccggcaattg	Protospacer
   *.**.   ****  *************************************** *..

62. spacer 2.1|2198842|58|CP027371|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 11, identity: 0.81

---agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattca	CRISPR spacer
acaaaact---gcactcaaccgtaggccggataaggcgttcacgccgcatccggcaattg	Protospacer
   *.**.   ****  *************************************** *..

63. spacer 4.7|2926532|34|CP027371|CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 11, identity: 0.676

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggcccgggaaaaacgggttcgcggcggcggcttc	Protospacer
    *.  ..****** ************** **

64. spacer 4.13|2926533|34|CP027371|PILER-CR matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 11, identity: 0.676

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggcccgggaaaaacgggttcgcggcggcggcttc	Protospacer
    *.  ..****** ************** **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage