CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027318	Escherichia coli strain 2015C-3107 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
CP027317	Escherichia coli strain 2015C-3107 chromosome, complete genome	2 crisprs	NA	0	8	0	0

1. CP027317

CRISPR-Cas detection and classification

Crispr_ID: CP027317_1

• CRISPR_ID: CP027317_1
• CRISPR_location: 1977892-1978225
• CRISPR_type: Orphan
• Repeat_type: I-E
• Spacer_info: 5 spacers

Consensus repeat of CP027317_1

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GCGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
GCGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

spacers of CP027317_1

>1.1|1977921|32|CP027317|CRT
TAAGTGATATCCATCATCGCATCCAGTGCGCC
>1.2|1977982|32|CP027317|CRT
TCACGCGCTGTTACCCAGTCCCTTTTTTTCAG
>1.3|1978043|32|CP027317|CRT
TACAGGAAAGAATCCGCCAACGGCGACAGGGG
>1.4|1978104|32|CP027317|CRT
GAATATCCACCCGTCCTGTATTCCGCCAATTG
>1.5|1978165|32|CP027317|CRT
TACCAAACCGGAATCTTTCCATATAACGGCGG
>1.6|1977982|31|CP027317|CRISPRCasFinder
TCACGCGCTGTTACCCAGTCCCTTTTTTTCA
>1.7|1978043|31|CP027317|CRISPRCasFinder
TACAGGAAAGAATCCGCCAACGGCGACAGGG
>1.8|1978104|31|CP027317|CRISPRCasFinder
GAATATCCACCCGTCCTGTATTCCGCCAATT
>1.9|1978165|31|CP027317|CRISPRCasFinder
TACCAAACCGGAATCTTTCCATATAACGGCG
>1.10|1977983|31|CP027317|PILER-CR
TCACGCGCTGTTACCCAGTCCCTTTTTTTCA
>1.11|1978044|31|CP027317|PILER-CR
TACAGGAAAGAATCCGCCAACGGCGACAGGG
>1.12|1978105|31|CP027317|PILER-CR
GAATATCCACCCGTCCTGTATTCCGCCAATT
>1.13|1978166|31|CP027317|PILER-CR
TACCAAACCGGAATCTTTCCATATAACGGCG

CRISPR arrays and Neighbor proteins around CP027317_1

CRISPR arrays

The CRISPR arrays of CP027317_1

>merge|CP027317|1|1977892-1978225|CRT,CRISPRCasFinder,PILER-CR
GGGAGTTCTACCGCAGGGGCGGGGAATTCTAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTCACGCGCTGTTACCCAGTCCCTTTTTTTCAGCGGTTTATCCCCGCTGGCGCGGGGAACACTACAGGAAAGAATCCGCCAACGGCGACAGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACGAATATCCACCCGTCCTGTATTCCGCCAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACTACCAAACCGGAATCTTTCCATATAACGGCGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027317|1|1|1977892-1978225|CRT
GGGAGTTCTACCGCAGGGGCGGGGAATTC	TAAGTGATATCCATCATCGCATCCAGTGCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCGCTGTTACCCAGTCCCTTTTTTTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACAGGAAAGAATCCGCCAACGGCGACAGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATATCCACCCGTCCTGTATTCCGCCAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACCAAACCGGAATCTTTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027317|1|1|1977952-1978225|CRISPRCasFinder
CCGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCGCTGTTACCCAGTCCCTTTTTTTCA
GCGGTTTATCCCCGCTGGCGCGGGGAACAC	TACAGGAAAGAATCCGCCAACGGCGACAGGG
GCGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATATCCACCCGTCCTGTATTCCGCCAATT
GCGGTTTATCCCCGCTGGCGCGGGGAACAC	TACCAAACCGGAATCTTTCCATATAACGGCG
GCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027317|1|1|1977953-1978225|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACACT	CACGCGCTGTTACCCAGTCCCTTTTTTTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACACT	ACAGGAAAGAATCCGCCAACGGCGACAGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACACG	AATATCCACCCGTCCTGTATTCCGCCAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACACT	ACCAAACCGGAATCTTTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein sequences

Crispr_ID: CP027317_2

• CRISPR_ID: CP027317_2
• CRISPR_location: 2005238-2005449
• CRISPR_type: Orphan
• Repeat_type: I-E
• Spacer_info: 3 spacers

Consensus repeat of CP027317_2

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder

spacers of CP027317_2

>2.1|2005267|32|CP027317|CRT
ATATACAGCAAACCTTCAGAATGCATTCCGGA
>2.2|2005328|32|CP027317|CRT
TTGCATCATTTTTGTACACGTCGAGCTTCCCC
>2.3|2005389|32|CP027317|CRT
CGCGTTGAAAGCGCGAGCGCGTTAGCTGACGA
>2.4|2005268|32|CP027317|PILER-CR
ATATACAGCAAACCTTCAGAATGCATTCCGGA
>2.5|2005329|32|CP027317|PILER-CR
TTGCATCATTTTTGTACACGTCGAGCTTCCCC
>2.6|2005390|32|CP027317|PILER-CR
CGCGTTGAAAGCGCGAGCGCGTTAGCTGACGA
>2.7|2005267|33|CP027317|CRISPRCasFinder
ATATACAGCAAACCTTCAGAATGCATTCCGGAC
>2.8|2005328|33|CP027317|CRISPRCasFinder
TTGCATCATTTTTGTACACGTCGAGCTTCCCCC
>2.9|2005389|33|CP027317|CRISPRCasFinder
CGCGTTGAAAGCGCGAGCGCGTTAGCTGACGAC

CRISPR arrays and Neighbor proteins around CP027317_2

CRISPR arrays

The CRISPR arrays of CP027317_2

>merge|CP027317|2|2005238-2005449|CRT,PILER-CR,CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTCATATACAGCAAACCTTCAGAATGCATTCCGGACGGTTTATCCCCGCTGGCGCGGGGAACTCTTGCATCATTTTTGTACACGTCGAGCTTCCCCCGGTTTATCCCCGCTAGCGCGGGGAACTCCGCGTTGAAAGCGCGAGCGCGTTAGCTGACGACGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027317|2|2|2005238-2005449|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTGCATCATTTTTGTACACGTCGAGCTTCCCC
CGGTTTATCCCCGCTAGCGCGGGGAACTC	CGCGTTGAAAGCGCGAGCGCGTTAGCTGACGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027317|2|2|2005239-2005449|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTCA	TATACAGCAAACCTTCAGAATGCATTCCGGAC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	TGCATCATTTTTGTACACGTCGAGCTTCCCCC
GGTTTATCCCCGCTAGCGCGGGGAACTCC	GCGTTGAAAGCGCGAGCGCGTTAGCTGACGAC
GGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027317|2|2|2005239-2005449|CRISPRCasFinder
GGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGAC
GGTTTATCCCCGCTGGCGCGGGGAACTC	TTGCATCATTTTTGTACACGTCGAGCTTCCCCC
GGTTTATCCCCGCTAGCGCGGGGAACTC	CGCGTTGAAAGCGCGAGCGCGTTAGCTGACGAC
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein sequences

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027317_1	1.1|1977921|32|CP027317|CRT	1977921-1977952	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	3	0.906
CP027317_1	1.1|1977921|32|CP027317|CRT	1977921-1977952	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	112768-112799	7	0.781
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_AP022602	Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399	61998-62029	7	0.781
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_AP022602	Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399	61999-62029	7	0.774
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_AP022602	Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399	61999-62029	7	0.774
CP027317_1	1.1|1977921|32|CP027317|CRT	1977921-1977952	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428128	8	0.75
CP027317_1	1.6|1977982|31|CP027317|CRISPRCasFinder	1977982-1978012	31	NZ_CP026601	Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence	97057-97087	8	0.742
CP027317_1	1.10|1977983|31|CP027317|PILER-CR	1977983-1978013	31	NZ_CP026601	Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence	97057-97087	8	0.742
CP027317_1	1.1|1977921|32|CP027317|CRT	1977921-1977952	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141309	9	0.719
CP027317_1	1.2|1977982|32|CP027317|CRT	1977982-1978013	32	NZ_CP026601	Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence	97056-97087	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP026242	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence	168728-168759	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP009883	Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence	5480-5511	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	100871-100902	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP026171	Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence	69667-69698	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP026196	Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence	140212-140243	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	335649-335680	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	CP009869	Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence	51816-51847	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	136819-136850	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	50052-50083	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP032179	Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence	65506-65537	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP026391	Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence	6461-6492	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP029142	Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence	256679-256710	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP031135	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence	47914-47945	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP011635	Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence	9471-9502	9	0.719
CP027317_1	1.3|1978043|32|CP027317|CRT	1978043-1978074	32	NZ_CP044111	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2	384417-384448	9	0.719
CP027317_1	1.5|1978165|32|CP027317|CRT	1978165-1978196	32	AP018320	Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome	85941-85972	9	0.719
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP026242	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence	168728-168758	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP009883	Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence	5480-5510	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	100872-100902	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP026171	Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence	69668-69698	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP026196	Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence	140212-140242	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	335649-335679	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	CP009869	Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence	51817-51847	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	136820-136850	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	50052-50082	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP032179	Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence	65507-65537	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP026391	Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence	6461-6491	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP029142	Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence	256680-256710	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP031135	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence	47915-47945	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP011635	Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence	9471-9501	9	0.71
CP027317_1	1.7|1978043|31|CP027317|CRISPRCasFinder	1978043-1978073	31	NZ_CP044111	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2	384418-384448	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP026242	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence	168728-168758	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP009883	Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence	5480-5510	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	100872-100902	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP026171	Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence	69668-69698	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP026196	Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence	140212-140242	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	335649-335679	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	CP009869	Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence	51817-51847	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	136820-136850	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	50052-50082	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP032179	Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence	65507-65537	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP026391	Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence	6461-6491	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP029142	Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence	256680-256710	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP031135	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence	47915-47945	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP011635	Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence	9471-9501	9	0.71
CP027317_1	1.11|1978044|31|CP027317|PILER-CR	1978044-1978074	31	NZ_CP044111	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2	384418-384448	9	0.71

1. spacer 1.1|1977921|32|CP027317|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

2. spacer 1.1|1977921|32|CP027317|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

3. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_AP022602 (Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399) position: , mismatch: 7, identity: 0.781

tacaggaa---agaatccgccaacggcgacagggg	CRISPR spacer
---atgcacccagaatccgccaccggcgaccgggg	Protospacer
   * * *   *********** ******* ****

4. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_AP022602 (Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399) position: , mismatch: 7, identity: 0.774

tacaggaa---agaatccgccaacggcgacaggg	CRISPR spacer
---atgcacccagaatccgccaccggcgaccggg	Protospacer
   * * *   *********** ******* ***

5. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_AP022602 (Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399) position: , mismatch: 7, identity: 0.774

tacaggaa---agaatccgccaacggcgacaggg	CRISPR spacer
---atgcacccagaatccgccaccggcgaccggg	Protospacer
   * * *   *********** ******* ***

6. spacer 1.1|1977921|32|CP027317|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

7. spacer 1.6|1977982|31|CP027317|CRISPRCasFinder matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

tcacgcgctgttacccagtccctttttttca	CRISPR spacer
tcttataatgttatccagtacctttttttca	Protospacer
** .... *****.***** ***********

8. spacer 1.10|1977983|31|CP027317|PILER-CR matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

tcacgcgctgttacccagtccctttttttca	CRISPR spacer
tcttataatgttatccagtacctttttttca	Protospacer
** .... *****.***** ***********

9. spacer 1.1|1977921|32|CP027317|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

10. spacer 1.2|1977982|32|CP027317|CRT matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tcacgcgctgttacccagtccctttttttcag	CRISPR spacer
tcttataatgttatccagtacctttttttcat	Protospacer
** .... *****.***** *********** 

11. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP026242 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

12. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP009883 (Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

13. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

14. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP026171 (Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

15. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP026196 (Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

16. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

17. spacer 1.3|1978043|32|CP027317|CRT matches to CP009869 (Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

18. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

19. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

20. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

21. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP026391 (Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

22. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP029142 (Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

23. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

24. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP011635 (Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

25. spacer 1.3|1978043|32|CP027317|CRT matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

tacaggaaagaatccgccaacggcgacagggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacgg	Protospacer
   ********* *****.******* .. **

26. spacer 1.5|1978165|32|CP027317|CRT matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

---taccaaaccggaatctttccatataacggcgg	CRISPR spacer
ggattttga---ggaagctttctatataacggcgg	Protospacer
   * ...*   **** *****.************

27. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP026242 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

28. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP009883 (Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

29. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

30. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP026171 (Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

31. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP026196 (Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

32. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

33. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to CP009869 (Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

34. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

35. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

36. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

37. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP026391 (Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

38. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP029142 (Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

39. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

40. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP011635 (Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

41. spacer 1.7|1978043|31|CP027317|CRISPRCasFinder matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

42. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP026242 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

43. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP009883 (Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

44. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

45. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP026171 (Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

46. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP026196 (Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

47. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

48. spacer 1.11|1978044|31|CP027317|PILER-CR matches to CP009869 (Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

49. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

50. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

51. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

52. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP026391 (Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

53. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP029142 (Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

54. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

55. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP011635 (Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *

56. spacer 1.11|1978044|31|CP027317|PILER-CR matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 9, identity: 0.71

tacaggaaagaatccgccaacggcgacaggg	CRISPR spacer
gcgaggaaagaagccgccgacggcgaggacg	Protospacer
   ********* *****.******* .. *