CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027641	Escherichia coli strain 2014C-4705 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
CP027640	Escherichia coli strain 2014C-4705 chromosome, complete genome	3 crisprs	NA	0	11	0	0

Cas Category Instructions

Results visualization

1. CP027640

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CRISPR-Cas detection and classification

Crispr_ID: CP027640_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027640_1

1870054-1870202

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP027640_1

>merge|CP027640|1|1870054-1870202|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAATCGACGGGGTGCGGTAAAACCTTTGCGAACGCGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGC

>CP027640|1|1|1870054-1870202|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CGACGGGGTGCGGTAAAACCTTTGCGAACGC
GTTCACTGCCGTACAGGCAGCTTAGAAAT	TCACAGGTAACATACTCCACCCGCCCACCAT
GTTCACTGCCGTACAGACAGATAAAATGC

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Crispr_ID: CP027640_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027640_2

3964549-3964821

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

4 spacers

The CRISPR arrays of CP027640_2

>merge|CP027640|2|3964549-3964821|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGGCGCGGGGAACACTCACGCGCTGTTACCCAGTCCCTTTTTTTCAGCGGTTTATCCCCGCTGGCGCGGGGAACACGCAGACTATAACGAGGGTCGCACGCGGATCATCGGTTTATCCCCGCTGGCGCGGGGAACACTACCAAACCGGAATCTTTCCATATAACGGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACCGAAATTGCCGACAGTAATAAAATGGAATTTTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027640|2|1|3964549-3964821|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCGCTGTTACCCAGTCCCTTTTTTTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAGACTATAACGAGGGTCGCACGCGGATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACCAAACCGGAATCTTTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGAAATTGCCGACAGTAATAAAATGGAATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027640|2|2|3964549-3964821|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCGCTGTTACCCAGTCCCTTTTTTTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAGACTATAACGAGGGTCGCACGCGGATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACCAAACCGGAATCTTTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGAAATTGCCGACAGTAATAAAATGGAATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP027640|2|1|3964549-3964821|CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCGCTGTTACCCAGTCCCTTTTTTTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAGACTATAACGAGGGTCGCACGCGGATCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACCAAACCGGAATCTTTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGAAATTGCCGACAGTAATAAAATGGAATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

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Crispr_ID: CP027640_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027640_3

3990519-3991218

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

11 spacers

The CRISPR arrays of CP027640_3

>merge|CP027640|3|3990519-3991218|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCGCCTGACATTGCAGACGTTACAAATTGAGAGGCGGTTTATCCCCGCTGGCGCGGGGAACTCTCCGTCCACCCTGATAGCCGCCCTTGTGATCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTACTGCTCCGCTGGCGTTTCTCCCTCGCCCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCGTCCTCTTTTTTCGACGTCAGGAAAATATCGGCGGTTTATCCCCGCTGGCGCGGGGAACTCTCATTTCCCATGCAAAATGCTGCATTCCTGGCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGTGGCAGGCCGGTAATATGAAAACGACAGAGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGGGCGTTAACGCGGTGATACTGTTTGACGGCGGTTTATCCCCGCTGGCGCGGGGAACTCTGATTTTGGTGGCGGGGGTGACTGGGGGAATACGGTTTATCCCCGCTGGCGCGGGGAACTCTACCAAACCGGAATCGCTCCATATAACGGCGGCGGTTTATCCCCGCTGGCGCGGGGAACTCCAACCCGGCGGCACGGTCAATCGTTGCGTCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCGACTCAAAACGGCGCAGGTCAAAATCGTTCAACGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027640|3|3|3990519-3991218|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCCGTCCACCCTGATAGCCGCCCTTGTGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACTGCTCCGCTGGCGTTTCTCCCTCGCCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTCCTCTTTTTTCGACGTCAGGAAAATATCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCATTTCCCATGCAAAATGCTGCATTCCTGGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTGGCAGGCCGGTAATATGAAAACGACAGAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGATTTTGGTGGCGGGGGTGACTGGGGGAATA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCAAACCGGAATCGCTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAACCCGGCGGCACGGTCAATCGTTGCGTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GACTCAAAACGGCGCAGGTCAAAATCGTTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027640|3|2|3990519-3991218|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCCGTCCACCCTGATAGCCGCCCTTGTGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACTGCTCCGCTGGCGTTTCTCCCTCGCCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTCCTCTTTTTTCGACGTCAGGAAAATATCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCATTTCCCATGCAAAATGCTGCATTCCTGGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTGGCAGGCCGGTAATATGAAAACGACAGAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGATTTTGGTGGCGGGGGTGACTGGGGGAATA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCAAACCGGAATCGCTCCATATAACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAACCCGGCGGCACGGTCAATCGTTGCGTCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GACTCAAAACGGCGCAGGTCAAAATCGTTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>CP027640|3|2|3990520-3991218|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CCTGACATTGCAGACGTTACAAATTGAGAGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	CCGTCCACCCTGATAGCCGCCCTTGTGATCCC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	ACTGCTCCGCTGGCGTTTCTCCCTCGCCCAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	TCCTCTTTTTTCGACGTCAGGAAAATATCGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	CATTTCCCATGCAAAATGCTGCATTCCTGGCC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GTGGCAGGCCGGTAATATGAAAACGACAGAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CGGGCGTTAACGCGGTGATACTGTTTGACGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	GATTTTGGTGGCGGGGGTGACTGGGGGAATAC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	ACCAAACCGGAATCGCTCCATATAACGGCGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCC	AACCCGGCGGCACGGTCAATCGTTGCGTCAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	ACTCAAAACGGCGCAGGTCAAAATCGTTCAAC
GGTTTATCCCCGCTGGCGCGGGGAACTC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027640_3	3.2\|3990609\|32\|CP027640\|CRISPRCasFinder,CRT	3990609-3990640	32	MT330372	Cronobacter phage JC01, complete genome	47177-47208	1	0.969
CP027640_3	3.13\|3990610\|32\|CP027640\|PILER-CR	3990610-3990641	32	MT330372	Cronobacter phage JC01, complete genome	47177-47208	1	0.969
CP027640_2	2.2\|3964639\|32\|CP027640\|PILER-CR,CRISPRCasFinder,CRT	3964639-3964670	32	MK356558	Salmonella sp. strain Sa1423 plasmid pSa1423-160k, complete sequence	30604-30635	4	0.875
CP027640_2	2.2\|3964639\|32\|CP027640\|PILER-CR,CRISPRCasFinder,CRT	3964639-3964670	32	MK356557	Salmonella sp. strain Sa1423 plasmid pSa1423-90k, complete sequence	58819-58850	5	0.844
CP027640_3	3.7\|3990914\|32\|CP027640\|CRISPRCasFinder,CRT	3990914-3990945	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	121002-121033	8	0.75
CP027640_3	3.18\|3990915\|32\|CP027640\|PILER-CR	3990915-3990946	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	121002-121033	8	0.75
CP027640_2	2.1\|3964578\|32\|CP027640\|PILER-CR,CRISPRCasFinder,CRT	3964578-3964609	32	NZ_CP026601	Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence	97056-97087	9	0.719
CP027640_2	2.3\|3964700\|32\|CP027640\|PILER-CR,CRISPRCasFinder,CRT	3964700-3964731	32	AP018320	Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome	85941-85972	9	0.719
CP027640_3	3.4\|3990731\|32\|CP027640\|CRISPRCasFinder,CRT	3990731-3990762	32	MK075004	Staphylococcus phage phiSP119-1, complete genome	44087-44118	9	0.719
CP027640_3	3.4\|3990731\|32\|CP027640\|CRISPRCasFinder,CRT	3990731-3990762	32	MK075002	Staphylococcus phage phiSP38-1, complete genome	37086-37117	9	0.719
CP027640_3	3.4\|3990731\|32\|CP027640\|CRISPRCasFinder,CRT	3990731-3990762	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1893191-1893222	9	0.719
CP027640_3	3.4\|3990731\|32\|CP027640\|CRISPRCasFinder,CRT	3990731-3990762	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1746140-1746171	9	0.719
CP027640_3	3.11\|3991158\|32\|CP027640\|CRISPRCasFinder,CRT	3991158-3991189	32	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	224225-224256	9	0.719
CP027640_3	3.11\|3991158\|32\|CP027640\|CRISPRCasFinder,CRT	3991158-3991189	32	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	35673-35704	9	0.719
CP027640_3	3.15\|3990732\|32\|CP027640\|PILER-CR	3990732-3990763	32	MK075004	Staphylococcus phage phiSP119-1, complete genome	44087-44118	9	0.719
CP027640_3	3.15\|3990732\|32\|CP027640\|PILER-CR	3990732-3990763	32	MK075002	Staphylococcus phage phiSP38-1, complete genome	37086-37117	9	0.719
CP027640_3	3.15\|3990732\|32\|CP027640\|PILER-CR	3990732-3990763	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1893191-1893222	9	0.719
CP027640_3	3.15\|3990732\|32\|CP027640\|PILER-CR	3990732-3990763	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1746140-1746171	9	0.719
CP027640_3	3.22\|3991159\|32\|CP027640\|PILER-CR	3991159-3991190	32	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	224225-224256	9	0.719
CP027640_3	3.22\|3991159\|32\|CP027640\|PILER-CR	3991159-3991190	32	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	35673-35704	9	0.719
CP027640_3	3.4\|3990731\|32\|CP027640\|CRISPRCasFinder,CRT	3990731-3990762	32	NZ_CP017591	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence	161448-161479	10	0.688
CP027640_3	3.15\|3990732\|32\|CP027640\|PILER-CR	3990732-3990763	32	NZ_CP017591	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence	161448-161479	10	0.688

1. spacer 3.2|3990609|32|CP027640|CRISPRCasFinder,CRT matches to MT330372 (Cronobacter phage JC01, complete genome) position: , mismatch: 1, identity: 0.969

tccgtccaccctgatagccgcccttgtgatcc	CRISPR spacer
tccgtcctccctgatagccgcccttgtgatcc	Protospacer
******* ************************

2. spacer 3.13|3990610|32|CP027640|PILER-CR matches to MT330372 (Cronobacter phage JC01, complete genome) position: , mismatch: 1, identity: 0.969

tccgtccaccctgatagccgcccttgtgatcc	CRISPR spacer
tccgtcctccctgatagccgcccttgtgatcc	Protospacer
******* ************************

3. spacer 2.2|3964639|32|CP027640|PILER-CR,CRISPRCasFinder,CRT matches to MK356558 (Salmonella sp. strain Sa1423 plasmid pSa1423-160k, complete sequence) position: , mismatch: 4, identity: 0.875

gcagactataacgagggtcgcacgcggatcat--	CRISPR spacer
gccgactataacgaaggtcgcacgc--atcataa	Protospacer
** ***********.**********  *****

4. spacer 2.2|3964639|32|CP027640|PILER-CR,CRISPRCasFinder,CRT matches to MK356557 (Salmonella sp. strain Sa1423 plasmid pSa1423-90k, complete sequence) position: , mismatch: 5, identity: 0.844

gcagactataacgagggtcgcacgcggatcat-	CRISPR spacer
gccgactataacgaaggtcgcacgcata-cata	Protospacer
** ***********.**********. * ***

5. spacer 3.7|3990914|32|CP027640|CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

6. spacer 3.18|3990915|32|CP027640|PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

7. spacer 2.1|3964578|32|CP027640|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tcacgcgctgttacccagtccctttttttcag	CRISPR spacer
tcttataatgttatccagtacctttttttcat	Protospacer
** .... *****.***** ***********

8. spacer 2.3|3964700|32|CP027640|PILER-CR,CRISPRCasFinder,CRT matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

---taccaaaccggaatctttccatataacggcgg	CRISPR spacer
ggattttga---ggaagctttctatataacggcgg	Protospacer
   * ...*   **** *****.************

9. spacer 3.4|3990731|32|CP027640|CRISPRCasFinder,CRT matches to MK075004 (Staphylococcus phage phiSP119-1, complete genome) position: , mismatch: 9, identity: 0.719

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
gcttacttttttcgacatcaggaaaaaatatc	Protospacer
*... ***********.********* **

10. spacer 3.4|3990731|32|CP027640|CRISPRCasFinder,CRT matches to MK075002 (Staphylococcus phage phiSP38-1, complete genome) position: , mismatch: 9, identity: 0.719

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
gcttacttttttcgacatcaggaaaaaatatc	Protospacer
*... ***********.********* **

11. spacer 3.4|3990731|32|CP027640|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.719

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
gtcctcttttttcgagatcaggatatctctcg	Protospacer
*************** .****** * . .. *

12. spacer 3.4|3990731|32|CP027640|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.719

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
gtcctcttttttcgagatcaggatatctctcg	Protospacer
*************** .****** * . .. *

13. spacer 3.11|3991158|32|CP027640|CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

gactcaaaacggcgcaggtcaaaatcgttcaa	CRISPR spacer
agcgaagcacggcgcgcgtcaaaatcgttcat	Protospacer
..*  *. *******. **************

14. spacer 3.11|3991158|32|CP027640|CRISPRCasFinder,CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.719

gactcaaaacggcgcaggtcaaaatcgttcaa	CRISPR spacer
aactcaagacggcgcagttcaaaaacaaggag	Protospacer
.******.********* ****** *.   *.

15. spacer 3.15|3990732|32|CP027640|PILER-CR matches to MK075004 (Staphylococcus phage phiSP119-1, complete genome) position: , mismatch: 9, identity: 0.719

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
gcttacttttttcgacatcaggaaaaaatatc	Protospacer
*... ***********.********* **

16. spacer 3.15|3990732|32|CP027640|PILER-CR matches to MK075002 (Staphylococcus phage phiSP38-1, complete genome) position: , mismatch: 9, identity: 0.719

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
gcttacttttttcgacatcaggaaaaaatatc	Protospacer
*... ***********.********* **

17. spacer 3.15|3990732|32|CP027640|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.719

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
gtcctcttttttcgagatcaggatatctctcg	Protospacer
*************** .****** * . .. *

18. spacer 3.15|3990732|32|CP027640|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.719

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
gtcctcttttttcgagatcaggatatctctcg	Protospacer
*************** .****** * . .. *

19. spacer 3.22|3991159|32|CP027640|PILER-CR matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

gactcaaaacggcgcaggtcaaaatcgttcaa	CRISPR spacer
agcgaagcacggcgcgcgtcaaaatcgttcat	Protospacer
..*  *. *******. **************

20. spacer 3.22|3991159|32|CP027640|PILER-CR matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.719

gactcaaaacggcgcaggtcaaaatcgttcaa	CRISPR spacer
aactcaagacggcgcagttcaaaaacaaggag	Protospacer
.******.********* ****** *.   *.

21. spacer 3.4|3990731|32|CP027640|CRISPRCasFinder,CRT matches to NZ_CP017591 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence) position: , mismatch: 10, identity: 0.688

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
caatttcatttttgatgtcaggaaaatatcgc	Protospacer
   .*.. ****.**.***************

22. spacer 3.15|3990732|32|CP027640|PILER-CR matches to NZ_CP017591 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence) position: , mismatch: 10, identity: 0.688

gtcctcttttttcgacgtcaggaaaatatcgg	CRISPR spacer
caatttcatttttgatgtcaggaaaatatcgc	Protospacer
   .*.. ****.**.***************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage