CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027846	Staphylococcus kloosii strain ATCC 43959 chromosome, complete genome	0 crisprs	csa3,WYL,DEDDh,cas3,DinG	0	0	7	0
CP027847	Staphylococcus kloosii strain ATCC 43959 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1270656 : 1313481

uncultured_Caudovirales_phage(43.18%)

terminase,holin,tail,portal,integrase,protease,plate,capsid,head

attL 1270441:1270457|attR 1314973:1314989

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1270441:1270457	attL	NA	NA	NA	NA
AVQ35761.1\|1270656_1271703_-\|integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	3.6e-51	34.5
AVQ35762.1\|1271757_1272384_-	hypothetical protein	A0A1W6JQ94	Staphylococcus_phage	4.7e-14	36.5
AVQ35763.1\|1272527_1273166_-	helix-turn-helix domain-containing protein	U3PBN8	Staphylococcus_phage	4.4e-100	84.4
AVQ35764.1\|1273358_1273613_+	XRE family transcriptional regulator	B7T095	Staphylococcus_virus	3.9e-28	77.9
AVQ35765.1\|1273927_1274590_-	hypothetical protein	A0A2I6PDF5	Staphylococcus_phage	1.5e-23	35.0
AVQ35766.1\|1274654_1274948_+	DUF771 domain-containing protein	Q4ZCA6	Staphylococcus_virus	2.6e-31	66.0
AVQ35767.1\|1274963_1275146_+	DUF1270 domain-containing protein	NA	NA	NA	NA
AVQ35768.1\|1275213_1275477_+	DUF1108 domain-containing protein	NA	NA	NA	NA
AVQ35769.1\|1275473_1275704_+	DUF2483 domain-containing protein	A0A0E3TAJ7	Staphylococcus_phage	3.6e-28	87.7
AVQ35770.1\|1275687_1276380_+	DNA-binding protein	A0A1W6JQH5	Staphylococcus_phage	2.3e-94	73.1
AVQ35771.1\|1276372_1277788_+	ATP-dependent helicase	A0A2H4JBR2	uncultured_Caudovirales_phage	7.0e-199	73.6
AVQ35772.1\|1277802_1278369_+	DUF669 domain-containing protein	A0A2H4JGZ0	uncultured_Caudovirales_phage	1.9e-78	77.7
AVQ35773.1\|1278349_1280656_+	DNA primase	A0A2H4J4H0	uncultured_Caudovirales_phage	0.0e+00	83.2
AVQ35774.1\|1280936_1281143_+	hypothetical protein	NA	NA	NA	NA
AVQ35775.1\|1281139_1281478_+	VRR-NUC domain-containing protein	A0A2H4JAY8	uncultured_Caudovirales_phage	2.4e-41	76.5
AVQ35776.1\|1281455_1281647_+	hypothetical protein	NA	NA	NA	NA
AVQ35777.1\|1281649_1281886_+	hypothetical protein	NA	NA	NA	NA
AVQ35778.1\|1281882_1282560_+	hypothetical protein	NA	NA	NA	NA
AVQ37092.1\|1282619_1283030_+	DUF3310 domain-containing protein	A0A2H4J3I9	uncultured_Caudovirales_phage	7.8e-34	65.5
AVQ37093.1\|1283041_1283725_+	SAM-dependent DNA methyltransferase	B7T0H3	Staphylococcus_virus	1.4e-83	67.3
AVQ35779.1\|1283721_1283916_+	hypothetical protein	Q4ZA43	Staphylococcus_virus	2.7e-05	42.6
AVQ35780.1\|1283921_1284377_+	hypothetical protein	A0A173GAT5	Staphylococcus_phage	3.8e-13	37.2
AVQ35781.1\|1284485_1285037_+	hypothetical protein	Q4ZBT4	Staphylococcus_virus	1.8e-17	49.5
AVQ35782.1\|1285189_1285687_+	dUTP pyrophosphatase	A0A2H4JAL9	uncultured_Caudovirales_phage	1.2e-60	70.9
AVQ35783.1\|1286164_1286365_+	hypothetical protein	NA	NA	NA	NA
AVQ35784.1\|1286533_1286794_+	hypothetical protein	NA	NA	NA	NA
AVQ35785.1\|1286795_1286978_+	hypothetical protein	NA	NA	NA	NA
AVQ35786.1\|1287141_1287585_+	hypothetical protein	NA	NA	NA	NA
AVQ35787.1\|1287588_1287777_+	transcriptional regulator	H9A0T9	Staphylococcus_phage	1.1e-06	51.0
AVQ35788.1\|1287777_1288191_+	DUF1492 domain-containing protein	A0A2H4J5D4	uncultured_Caudovirales_phage	1.0e-04	33.3
AVQ35789.1\|1288302_1288620_+	HNH endonuclease	A0A2H4J5U5	uncultured_Caudovirales_phage	1.1e-46	83.2
AVQ35790.1\|1288871_1289237_+	hypothetical protein	A0A2H4J959	uncultured_Caudovirales_phage	1.9e-47	80.2
AVQ35791.1\|1289233_1290886_+\|terminase	terminase large subunit	A0A2H4J6U3	uncultured_Caudovirales_phage	4.2e-304	90.7
AVQ35792.1\|1290904_1292077_+\|portal	phage portal protein	A0A2H4J9T2	uncultured_Caudovirales_phage	3.4e-191	86.6
AVQ35793.1\|1292057_1292837_+\|protease	Clp protease ClpP	A0A1W6JQA0	Staphylococcus_phage	2.6e-102	74.6
AVQ35794.1\|1292854_1294066_+\|capsid	phage major capsid protein	A0A1W6JQD9	Staphylococcus_phage	1.4e-203	89.1
AVQ35795.1\|1294259_1294547_+	hypothetical protein	A0A1W6JQ66	Staphylococcus_phage	1.1e-34	77.9
AVQ37094.1\|1294530_1294881_+\|head,tail	phage head-tail adapter protein	A0A1W6JQ73	Staphylococcus_phage	2.4e-44	72.6
AVQ35796.1\|1294877_1295273_+	hypothetical protein	A0A2H4JA97	uncultured_Caudovirales_phage	5.2e-43	61.1
AVQ35797.1\|1295272_1295695_+	hypothetical protein	A0A2H4J6T2	uncultured_Caudovirales_phage	3.8e-44	67.2
AVQ35798.1\|1295733_1296372_+\|tail	phage tail protein	A0A1W6JQ47	Staphylococcus_phage	3.7e-83	78.4
AVQ35799.1\|1296478_1296811_+	hypothetical protein	A0A2H4JAA8	uncultured_Caudovirales_phage	2.8e-26	60.0
AVQ35800.1\|1297095_1302630_+	peptidase M23	A0A1W6JQA9	Staphylococcus_phage	3.1e-295	68.1
AVQ35801.1\|1302645_1303470_+\|tail	phage tail family protein	A0A2H4J7E0	uncultured_Caudovirales_phage	7.7e-81	54.5
AVQ35802.1\|1303478_1305065_+	peptidase	A0A1W6JQ67	Staphylococcus_phage	3.9e-174	55.8
AVQ35803.1\|1305057_1305624_+	hypothetical protein	A0A249Y1Z4	Staphylococcus_phage	4.7e-05	36.1
AVQ35804.1\|1305636_1307571_+	hypothetical protein	R4WAL5	Staphylococcus_phage	3.6e-145	43.7
AVQ35805.1\|1307586_1309068_+\|plate	phage baseplate upper protein	A0A2I6PEI6	Staphylococcus_phage	1.0e-75	35.2
AVQ35806.1\|1309067_1309472_+	DUF2977 domain-containing protein	NA	NA	NA	NA
AVQ35807.1\|1309446_1309608_+	XkdX family protein	A0A2H4J5I2	uncultured_Caudovirales_phage	2.3e-21	88.7
AVQ35808.1\|1309644_1310088_+	hypothetical protein	A0A2H4JB99	uncultured_Caudovirales_phage	5.8e-43	57.9
AVQ35809.1\|1310060_1310474_+	hypothetical protein	A0A2H4J2M0	uncultured_Caudovirales_phage	5.4e-43	65.7
AVQ35810.1\|1310512_1310770_+\|holin	phage holin	A1BU76	Staphylococcus_virus	1.2e-27	70.7
AVQ35811.1\|1310769_1312143_+	CHAP domain-containing protein	A0A2H4J4H5	uncultured_Caudovirales_phage	1.1e-180	65.3
AVQ35812.1\|1313025_1313481_+	DUF4065 domain-containing protein	A0A0N9SGM1	Paenibacillus_phage	1.0e-18	41.1
1314973:1314989	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1389229 : 1422661

Staphylococcus_phage(96.15%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ35876.1\|1389229_1390627_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.2e-161	58.9
AVQ35877.1\|1390639_1391644_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.2e-88	50.9
AVQ35878.1\|1391633_1391876_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.1e-26	67.1
AVQ35879.1\|1391931_1392408_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.5e-41	52.5
AVQ37097.1\|1392415_1393186_+	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	1.4e-92	67.8
AVQ35880.1\|1393248_1394841_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	4.1e-256	79.8
AVQ35881.1\|1395219_1396416_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	8.3e-193	85.9
AVQ35882.1\|1396509_1397418_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.5e-101	79.7
AVQ35883.1\|1397662_1398499_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.1e-103	64.3
AVQ35884.1\|1398566_1398923_-	CrcB family protein	NA	NA	NA	NA
AVQ35885.1\|1398922_1399288_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.8e-35	61.2
AVQ35886.1\|1399348_1399654_-	hypothetical protein	NA	NA	NA	NA
AVQ35887.1\|1399933_1400647_+	transaldolase	H8ZNI7	Synechococcus_phage	1.1e-19	37.4
AVQ35888.1\|1400892_1401726_+	AraC family transcriptional regulator	NA	NA	NA	NA
AVQ35889.1\|1401858_1402308_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.8e-20	41.8
AVQ35890.1\|1402314_1402743_-	hypothetical protein	NA	NA	NA	NA
AVQ37098.1\|1402747_1403191_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	9.6e-22	43.9
AVQ35891.1\|1403439_1403664_+	hypothetical protein	NA	NA	NA	NA
AVQ35892.1\|1403802_1404663_+	autolysin	A0A1W6JNR1	Staphylococcus_phage	4.6e-36	41.3
AVQ35893.1\|1404877_1405801_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
AVQ35894.1\|1405981_1407448_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	3.5e-12	62.5
AVQ35895.1\|1407889_1408933_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-126	64.1
AVQ35896.1\|1408939_1409572_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.0e-69	61.4
AVQ35897.1\|1409582_1410764_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.7e-161	70.2
AVQ35898.1\|1410776_1411241_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.1e-58	75.3
AVQ35899.1\|1411476_1412478_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	1.8e-124	67.9
AVQ35900.1\|1412711_1413542_+	alpha/beta hydrolase	NA	NA	NA	NA
AVQ35901.1\|1413716_1414676_+	L-lactate dehydrogenase	NA	NA	NA	NA
AVQ35902.1\|1414830_1415232_+	transcriptional regulator	NA	NA	NA	NA
AVQ35903.1\|1415344_1415905_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	1.4e-65	63.2
AVQ35904.1\|1415901_1416855_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.0e-69	87.2
AVQ35905.1\|1416961_1418140_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	3.2e-157	74.0
AVQ35906.1\|1418445_1420860_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	84.7
AVQ35907.1\|1420881_1421193_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.1e-32	66.0
AVQ35908.1\|1421395_1422661_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	8.3e-42	78.3

DBSCAN-SWA_3

1541881 : 1553362

uncultured_Mediterranean_phage(57.14%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ36015.1\|1541881_1542880_+	Holliday junction branch migration DNA helicase RuvB	E3T4M7	Cafeteria_roenbergensis_virus	1.7e-05	25.7
AVQ36016.1\|1542885_1543911_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AVQ36017.1\|1543933_1545073_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.4e-85	44.1
AVQ36018.1\|1545088_1545349_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.7e-05	44.3
AVQ36019.1\|1545572_1547849_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.5e-28	33.7
AVQ36020.1\|1548001_1550278_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.8e-71	30.3
AVQ36021.1\|1550295_1550814_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.6e-28	46.5
AVQ36022.1\|1551172_1553362_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	5.0e-10	35.9

DBSCAN-SWA_4

1675507 : 1685398

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ36147.1\|1675507_1676395_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	3.6e-36	30.3
AVQ36148.1\|1676449_1676956_-	DUF309 domain-containing protein	NA	NA	NA	NA
AVQ36149.1\|1677052_1677787_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.0e-08	24.0
AVQ36150.1\|1677770_1678319_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.5e-08	28.3
AVQ36151.1\|1678311_1679046_+	rRNA pseudouridine synthase	NA	NA	NA	NA
AVQ36152.1\|1679178_1679904_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	7.0e-46	41.3
AVQ37106.1\|1679887_1681633_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	4.4e-17	25.2
AVQ36153.1\|1681920_1682463_+	ECF transporter S component	NA	NA	NA	NA
AVQ36154.1\|1682709_1682958_-	ferredoxin	A0A127AYY7	Bacillus_phage	1.3e-15	49.3
AVQ36155.1\|1683069_1684029_+	hypothetical protein	NA	NA	NA	NA
AVQ36156.1\|1684018_1685398_+	ATP-dependent DNA helicase RecQ	M1PGQ0	Moumouvirus	3.2e-55	34.0

DBSCAN-SWA_5

2138281 : 2181527

uncultured_Caudovirales_phage(55.1%)

holin,terminase,tail,portal,integrase,protease,capsid,head

attL 2155486:2155501|attR 2181989:2182004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ36569.1\|2138281_2139760_-	CHAP domain-containing protein	A0A249Y173	Staphylococcus_phage	2.8e-166	60.1
AVQ36570.1\|2139746_2140229_-\|holin	phage holin	U3PJ27	Staphylococcus_phage	1.8e-45	75.2
AVQ36571.1\|2140271_2140667_-	hypothetical protein	A0A2H4JCM1	uncultured_Caudovirales_phage	1.5e-42	70.8
AVQ36572.1\|2140653_2141076_-	hypothetical protein	A0A2H4JID2	uncultured_Caudovirales_phage	1.7e-60	75.0
AVQ36573.1\|2141112_2141271_-	XkdX family protein	A0A2H4J5I2	uncultured_Caudovirales_phage	6.9e-23	92.3
AVQ36574.1\|2141245_2141650_-	DUF2977 domain-containing protein	NA	NA	NA	NA
AVQ36575.1\|2141649_2143134_-	DUF2479 domain-containing protein	A0A2I6PEI6	Staphylococcus_phage	3.1e-64	32.7
AVQ36576.1\|2143147_2145085_-	hypothetical protein	R4WAL5	Staphylococcus_phage	5.9e-132	40.3
AVQ36577.1\|2145108_2145387_-	hypothetical protein	NA	NA	NA	NA
AVQ36578.1\|2145402_2146995_-	peptidase	A0A2H4J5K5	uncultured_Caudovirales_phage	3.0e-182	58.4
AVQ36579.1\|2147003_2147828_-\|tail	phage tail family protein	A0A1W6JQE9	Staphylococcus_phage	1.4e-77	51.3
AVQ36580.1\|2147827_2152354_-\|tail	phage tail tape measure protein	A0A2H4JA90	uncultured_Caudovirales_phage	0.0e+00	70.8
AVQ36581.1\|2152568_2152931_-	hypothetical protein	A0A2H4JD82	uncultured_Caudovirales_phage	6.8e-58	93.3
AVQ36582.1\|2153003_2153498_-\|tail	phage tail protein	A0A1D6Z291	Staphylococcus_phage	5.0e-35	56.7
AVQ36583.1\|2153591_2154188_-\|tail	phage tail protein	A0A2H4JH93	uncultured_Caudovirales_phage	1.5e-97	94.1
AVQ36584.1\|2154200_2154605_-	hypothetical protein	A0A2H4JEG7	uncultured_Caudovirales_phage	7.1e-64	86.6
AVQ36585.1\|2154605_2155016_-	hypothetical protein	A0A2H4J3L8	uncultured_Caudovirales_phage	7.8e-42	62.5
AVQ36586.1\|2155012_2155342_-	hypothetical protein	A0A2H4JGE5	uncultured_Caudovirales_phage	2.8e-50	84.4
AVQ36587.1\|2155331_2155673_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J5J4	uncultured_Caudovirales_phage	1.2e-48	84.1
2155486:2155501	attL	NA	NA	NA	NA
AVQ36588.1\|2155744_2157088_-\|capsid	phage major capsid protein	A0A2H4J411	uncultured_Caudovirales_phage	1.7e-141	86.9
AVQ36589.1\|2157130_2157688_-\|head,protease	HK97 family phage prohead protease	A0A2H4J792	uncultured_Caudovirales_phage	3.7e-63	62.9
AVQ36590.1\|2157674_2158910_-\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	4.5e-210	87.8
AVQ36591.1\|2158912_2159098_-	hypothetical protein	A0A2H4JD76	uncultured_Caudovirales_phage	1.6e-15	73.2
AVQ36592.1\|2159110_2160850_-\|terminase	terminase large subunit	A0A2H4J5G3	uncultured_Caudovirales_phage	1.6e-258	74.5
AVQ36593.1\|2160830_2161316_-\|terminase	phage terminase small subunit P27 family	A0A0D4DCN9	Staphylococcus_phage	5.7e-52	63.5
AVQ36594.1\|2161465_2161816_-	HNH endonuclease	H9A108	Staphylococcus_phage	4.6e-51	81.4
AVQ36595.1\|2162414_2162831_-	DUF722 domain-containing protein	I6TJX2	Staphylococcus_virus	1.1e-46	65.2
AVQ36596.1\|2162844_2163057_-	hypothetical protein	A0A2H4J2V9	uncultured_Caudovirales_phage	2.4e-15	62.9
AVQ36597.1\|2163058_2163247_-	transcriptional regulator	A0A2H4JHD4	uncultured_Caudovirales_phage	2.2e-07	71.1
AVQ36598.1\|2163499_2164006_-	dUTP pyrophosphatase	A0A2H4JAL9	uncultured_Caudovirales_phage	1.3e-62	71.6
AVQ36599.1\|2164007_2164280_-	hypothetical protein	NA	NA	NA	NA
AVQ36600.1\|2164276_2164516_-	hypothetical protein	NA	NA	NA	NA
AVQ36601.1\|2164512_2164758_-	hypothetical protein	NA	NA	NA	NA
AVQ36602.1\|2164763_2164958_-	hypothetical protein	NA	NA	NA	NA
AVQ36603.1\|2164954_2165188_-	hypothetical protein	NA	NA	NA	NA
AVQ36604.1\|2165190_2165412_-	DUF3310 domain-containing protein	A0A2H4J3I9	uncultured_Caudovirales_phage	3.9e-32	88.6
AVQ36605.1\|2165411_2165606_-	hypothetical protein	NA	NA	NA	NA
AVQ36606.1\|2165607_2166000_-	hypothetical protein	U3PG42	Staphylococcus_phage	1.5e-13	72.5
AVQ36607.1\|2166002_2166194_-	hypothetical protein	NA	NA	NA	NA
AVQ36608.1\|2166199_2166601_-	DUF1064 domain-containing protein	A0A2H4J5N5	uncultured_Caudovirales_phage	9.2e-56	76.7
AVQ36609.1\|2166614_2166863_-	hypothetical protein	NA	NA	NA	NA
AVQ36610.1\|2166859_2167060_-	hypothetical protein	A0A2H4JDU0	uncultured_Caudovirales_phage	1.3e-18	67.2
AVQ36611.1\|2167056_2168298_-	damage-inducible protein	U3PG36	Staphylococcus_phage	2.8e-204	87.7
AVQ36612.1\|2168281_2168650_-	hypothetical protein	A0A2H4J7Z2	uncultured_Caudovirales_phage	1.7e-48	76.5
AVQ36613.1\|2168655_2169384_-	DNA replication protein DnaD	A0A1W6JQ30	Staphylococcus_phage	9.9e-48	59.3
AVQ36614.1\|2169370_2170051_-	hypothetical protein	A0A2H4J972	uncultured_Caudovirales_phage	1.6e-100	76.3
AVQ36615.1\|2170064_2170448_-	single-stranded DNA-binding protein	H9A0R6	Staphylococcus_phage	1.2e-44	66.2
AVQ36616.1\|2170447_2171104_-	single-stranded DNA-binding protein	A0A2H4JAI6	uncultured_Caudovirales_phage	3.0e-80	66.5
AVQ36617.1\|2171096_2171318_-	DUF2483 domain-containing protein	A0A1X9H047	Staphylococcus_phage	1.1e-23	74.0
AVQ36618.1\|2171289_2171568_-	hypothetical protein	A0A2H4J7G4	uncultured_Caudovirales_phage	4.9e-24	60.9
AVQ36619.1\|2171828_2172038_-	hypothetical protein	A0A1W6JQ31	Staphylococcus_phage	6.1e-27	81.2
AVQ36620.1\|2172101_2172587_+	hypothetical protein	NA	NA	NA	NA
AVQ36621.1\|2172728_2173478_-	Rha family transcriptional regulator	A0A2H4J8U5	uncultured_Caudovirales_phage	7.2e-94	70.7
AVQ36622.1\|2173519_2173720_-	XRE family transcriptional regulator	Q4ZC38	Staphylococcus_virus	2.9e-26	90.6
AVQ36623.1\|2173885_2174221_+	XRE family transcriptional regulator	Q4ZC39	Staphylococcus_virus	2.6e-35	73.6
AVQ36624.1\|2174233_2174698_+	ImmA/IrrE family metallo-endopeptidase	Q4ZC40	Staphylococcus_virus	9.7e-49	60.8
AVQ36625.1\|2174712_2175693_+	hypothetical protein	A0A1Q1PVZ4	Staphylococcus_phage	4.3e-131	73.4
AVQ36626.1\|2176113_2176311_+	hypothetical protein	A0A1P8L6H3	Staphylococcus_phage	2.2e-10	58.1
AVQ36627.1\|2176311_2176908_-	hypothetical protein	A0A1J0MFK1	Staphylococcus_phage	9.2e-52	59.4
AVQ36628.1\|2177022_2178072_+\|integrase	site-specific integrase	A0A1W6JPZ8	Staphylococcus_phage	3.2e-180	89.4
AVQ37113.1\|2178437_2179001_-	competence protein ComK	NA	NA	NA	NA
AVQ36629.1\|2179245_2179464_+	IDEAL domain-containing protein	NA	NA	NA	NA
AVQ36630.1\|2179544_2180534_-	lipoate--protein ligase	NA	NA	NA	NA
AVQ36631.1\|2180733_2180919_+	DUF2187 domain-containing protein	NA	NA	NA	NA
AVQ36632.1\|2180924_2181527_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
2181989:2182004	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2375663 : 2384634

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ36814.1\|2375663_2377769_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	90.2
AVQ36815.1\|2377731_2378130_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.4e-48	70.5
AVQ36816.1\|2378796_2379678_+	EamA/RhaT family transporter	NA	NA	NA	NA
AVQ36817.1\|2379702_2380203_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	3.5e-52	65.6
AVQ36818.1\|2380359_2381874_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.7e-55	33.7
AVQ36819.1\|2382079_2383585_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.0e-62	33.9
AVQ36820.1\|2383704_2384634_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	6.1e-10	26.2

DBSCAN-SWA_7

2398412 : 2405416

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ36832.1\|2398412_2399552_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	3.1e-24	35.5
AVQ36833.1\|2399535_2400129_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.2e-36	41.4
AVQ36834.1\|2400365_2401040_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.6e-63	56.3
AVQ36835.1\|2401039_2401465_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
AVQ36836.1\|2401457_2402174_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	4.2e-51	42.2
AVQ36837.1\|2402429_2403017_+	hypothetical protein	NA	NA	NA	NA
AVQ36838.1\|2403087_2403339_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AVQ36839.1\|2403544_2403997_+	hypothetical protein	Q9MBP7	Staphylococcus_prophage	1.4e-52	65.7
AVQ36840.1\|2404381_2405416_-	glycosyltransferase	A0A192Y8W7	Salmonella_phage	1.3e-61	43.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage