CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028106	Fusobacterium gonidiaformans ATCC 25563 chromosome, complete genome	0 crisprs	DEDDh,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DinG,cas14j	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

336401 : 362544

Fusobacterium_phage(89.66%)

plate,protease,tail,terminase,portal,holin,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ16346.1\|336401_337484_+	hypothetical protein	A0A0E3U246	Fusobacterium_phage	2.3e-85	45.2
AVQ16347.1\|338551_339220_+	hypothetical protein	A0A0E3Y615	Fusobacterium_phage	2.2e-49	50.5
AVQ16348.1\|339346_339790_+	hypothetical protein	A0A0E3Y4U4	Fusobacterium_phage	2.4e-52	74.1
AVQ16349.1\|339776_341549_+\|terminase	terminase	A0A0E3U2N4	Fusobacterium_phage	1.1e-294	82.3
AVQ16350.1\|341545_341764_+	hypothetical protein	A0A0E3U247	Fusobacterium_phage	7.0e-26	77.8
AVQ16351.1\|341773_343315_+\|portal	phage portal protein	A0A0E3Y693	Fusobacterium_phage	1.2e-249	83.9
AVQ16352.1\|343301_344417_+\|protease	Clp protease ClpP	A0A0E3Y6E9	Fusobacterium_phage	2.4e-109	57.9
AVQ16353.1\|344434_344755_+	hypothetical protein	A0A0E3Y5E3	Fusobacterium_phage	7.7e-29	58.8
AVQ16354.1\|344767_345775_+\|capsid	minor capsid protein E	A0A0E3U2N5	Fusobacterium_phage	3.6e-133	69.5
AVQ16355.1\|345816_346035_+	hypothetical protein	A0A0E3U249	Fusobacterium_phage	9.6e-07	58.8
AVQ16356.1\|346031_346346_+	hypothetical protein	A0A0E3Y618	Fusobacterium_phage	4.3e-32	64.4
AVQ16357.1\|346345_346936_+	hypothetical protein	A0A0E3Y4U7	Fusobacterium_phage	8.0e-40	49.0
AVQ16358.1\|346932_347400_+	hypothetical protein	A0A0E3Y698	Fusobacterium_phage	1.0e-50	60.1
AVQ16359.1\|347386_347656_+	hypothetical protein	A0A0E3U2N7	Fusobacterium_phage	7.2e-12	48.6
AVQ16360.1\|347656_349057_+\|tail	phage tail protein	A0A0E3U251	Fusobacterium_phage	9.9e-214	76.2
AVQ16361.1\|349066_349600_+\|tail	phage tail protein	A0A0E3Y6F4	Fusobacterium_phage	1.9e-77	79.7
AVQ16362.1\|349609_349945_+	hypothetical protein	A0A0E3Y5E7	Fusobacterium_phage	5.7e-35	64.0
AVQ16363.1\|350119_350383_+	hypothetical protein	NA	NA	NA	NA
AVQ16364.1\|350450_353036_+\|tail	phage tail tape measure protein	A0A0E3U2N9	Fusobacterium_phage	9.3e-242	61.9
AVQ16365.1\|353025_353235_+	hypothetical protein	NA	NA	NA	NA
AVQ16366.1\|353237_354314_+	late control protein D	A0A0E3U253	Fusobacterium_phage	7.6e-137	68.2
AVQ16367.1\|354313_354829_+\|plate	phage baseplate assembly protein V	A0A0E3Y4V1	Fusobacterium_phage	1.1e-53	57.1
AVQ16368.1\|354830_355217_+	hypothetical protein	A0A0E3Y6A2	Fusobacterium_phage	2.9e-46	69.5
AVQ16369.1\|355216_355528_+	hypothetical protein	A0A0E3Y6F8	Fusobacterium_phage	1.2e-26	60.4
AVQ16370.1\|355524_356625_+\|plate	baseplate J protein	A0A0E3U2P1	Fusobacterium_phage	1.6e-142	67.7
AVQ16371.1\|356617_357181_+\|tail	phage tail protein I	A0A0E3U255	Fusobacterium_phage	3.9e-52	53.3
AVQ16372.1\|358682_359357_+	hypothetical protein	A0A0E3U258	Fusobacterium_phage	3.3e-05	25.9
AVQ16373.1\|359428_359893_+	M15 family peptidase	A9DET4	Yersinia_phage	1.2e-17	39.2
AVQ16374.1\|359982_360366_+	hypothetical protein	NA	NA	NA	NA
AVQ16375.1\|360352_360805_+	DUF1353 domain-containing protein	A0A0E3Y4V5	Fusobacterium_phage	6.0e-19	44.1
AVQ16376.1\|360827_361292_+\|holin	holin	Q0H258	Geobacillus_phage	2.8e-16	43.6
AVQ16377.1\|361449_362544_+	ATPase	A0A2K9L596	Tupanvirus	4.2e-10	27.9

DBSCAN-SWA_2

528184 : 534766

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ16539.1\|528184_528646_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.7e-42	55.0
AVQ16540.1\|528650_529730_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.2e-44	35.3
AVQ16541.1\|529739_530387_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	1.1e-18	37.0
AVQ16542.1\|530399_531611_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-109	52.6
AVQ16543.1\|531649_533137_-	DUF1846 domain-containing protein	NA	NA	NA	NA
AVQ16544.1\|533236_533953_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-15	26.6
AVQ16545.1\|533968_534766_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.8e-11	21.8

DBSCAN-SWA_3

1187249 : 1199300

Prochlorococcus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ17122.1\|1187249_1187852_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.8e-18	34.3
AVQ17123.1\|1187897_1189124_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
AVQ17124.1\|1189140_1190643_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	2.7e-68	46.5
AVQ17125.1\|1190644_1191205_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.0e-25	38.3
AVQ17126.1\|1191192_1192209_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.6e-70	45.7
AVQ17127.1\|1192220_1193570_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	9.1e-47	30.8
AVQ17128.1\|1193598_1194315_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SE76	Cyanophage	1.1e-43	44.1
AVQ17129.1\|1194344_1194821_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.1e-28	48.1
AVQ17130.1\|1194833_1198511_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	9.5e-30	25.2
AVQ17131.1\|1199018_1199300_+	HU family DNA-binding protein	K4I4Q8	Salmonella_phage	3.4e-12	44.6

DBSCAN-SWA_4

1296210 : 1309559

Liberibacter_phage(25.0%)

integrase

attL 1300613:1300631|attR 1303295:1303313

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ17212.1\|1296210_1299360_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.9e-63	25.2
AVQ17213.1\|1299903_1301151_-	hypothetical protein	A0A1V0S9X7	Catovirus	4.7e-13	31.9
1300613:1300631	attL	NA	NA	NA	NA
AVQ17214.1\|1301162_1302152_-\|integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	3.4e-35	28.5
AVQ17215.1\|1302238_1303264_-	cell filamentation protein Fic	Q9JMN3	Wolbachia_phage	4.1e-84	48.9
AVQ17586.1\|1303263_1303956_+	restriction endonuclease subunit S	NA	NA	NA	NA
1303295:1303313	attR	NA	NA	NA	NA
AVQ17216.1\|1303952_1304456_-	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	1.7e-22	33.1
AVQ17217.1\|1304445_1305954_-	DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	4.1e-48	29.1
AVQ17218.1\|1306135_1307830_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.8e-31	27.0
AVQ17219.1\|1307816_1309559_-	ABC transporter	G3M9Y6	Bacillus_virus	2.2e-08	27.7

DBSCAN-SWA_5

1411815 : 1418786

Bacillus_virus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ17303.1\|1411815_1412385_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.4e-11	28.0
AVQ17304.1\|1412388_1412847_-\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
AVQ17305.1\|1413006_1413627_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AVQ17306.1\|1413651_1414578_+	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.8e-46	38.4
AVQ17307.1\|1414608_1415916_+	PhoH family protein	A0A141HS37	Bacillus_phage	1.6e-69	37.3
AVQ17308.1\|1415959_1416673_-	hypothetical protein	A0A292GAU5	Xanthomonas_phage	2.3e-33	44.8
AVQ17309.1\|1416836_1417106_-	type II toxin-antitoxin system RelE/ParE family toxin	X2KQ37	Campylobacter_phage	9.7e-09	53.8
AVQ17310.1\|1417090_1417318_-	CopG family transcriptional regulator	NA	NA	NA	NA
AVQ17311.1\|1417478_1418786_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.1e-153	65.7

DBSCAN-SWA_6

1530337 : 1535930

Enterobacteria_phage(33.33%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ17406.1\|1530337_1531444_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-70	40.1
AVQ17407.1\|1531471_1532899_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	6.5e-35	41.4
AVQ17408.1\|1532954_1533818_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.7e-91	58.2
AVQ17409.1\|1533836_1534541_-	acylneuraminate cytidylyltransferase family protein	A0A1B1IVD3	uncultured_Mediterranean_phage	6.9e-14	28.9
AVQ17410.1\|1534560_1534929_-	acyltransferase	A0A1V0SJ47	Klosneuvirus	1.1e-07	51.7
AVQ17411.1\|1535135_1535930_-\|holin	lipopolysaccharide cholinephosphotransferase	A0A1V0SAS8	Catovirus	1.2e-11	28.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage