CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028107	Fusobacterium necrophorum subsp. funduliforme strain 1_1_36S chromosome, complete genome	0 crisprs	WYL,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3,PD-DExK,cas13c,cas4,RT,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

577985 : 641045

Fusobacterium_phage(80.0%)

transposase,plate,protease,terminase,tail,holin,tRNA,portal,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ20664.1\|577985_579263_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AVQ22166.1\|579447_579747_-	hypothetical protein	NA	NA	NA	NA
AVQ20665.1\|579943_580597_-	DUF2786 domain-containing protein	NA	NA	NA	NA
AVQ20666.1\|580606_580840_-	hypothetical protein	NA	NA	NA	NA
AVQ20667.1\|581006_581315_-	hypothetical protein	NA	NA	NA	NA
AVQ20668.1\|581415_582096_-	hypothetical protein	A0A0E3U242	Fusobacterium_phage	1.9e-56	54.5
AVQ20669.1\|582088_582805_-	ParA family protein	A0A0E3Y677	Fusobacterium_phage	2.4e-62	56.4
AVQ20670.1\|582818_583211_-	hypothetical protein	NA	NA	NA	NA
AVQ20671.1\|583216_583426_-	hypothetical protein	NA	NA	NA	NA
AVQ20672.1\|583407_584043_-	hypothetical protein	Q3HQZ7	Burkholderia_phage	5.3e-05	31.5
AVQ20673.1\|584039_584864_-	replication protein	A0A0A0YX41	Streptococcus_phage	3.7e-35	45.9
AVQ20674.1\|584949_585567_+	hypothetical protein	NA	NA	NA	NA
AVQ20675.1\|585927_586155_-	hypothetical protein	NA	NA	NA	NA
AVQ20676.1\|586159_586438_-	hypothetical protein	NA	NA	NA	NA
AVQ20677.1\|586687_586906_-	hypothetical protein	NA	NA	NA	NA
AVQ20678.1\|587141_587375_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVQ20679.1\|587590_587785_-	hypothetical protein	NA	NA	NA	NA
AVQ20680.1\|588361_588586_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVQ20681.1\|588695_589154_+	hypothetical protein	NA	NA	NA	NA
AVQ20682.1\|589150_589336_-	hypothetical protein	NA	NA	NA	NA
AVQ20683.1\|589402_589606_+	hypothetical protein	NA	NA	NA	NA
AVQ20684.1\|589642_589822_-	hypothetical protein	NA	NA	NA	NA
AVQ20685.1\|589830_590025_-	hypothetical protein	NA	NA	NA	NA
AVQ20686.1\|590175_590655_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVQ20687.1\|590677_591085_+	hypothetical protein	NA	NA	NA	NA
AVQ20688.1\|591101_592952_+	restriction endonuclease subunit R	A0A2I5ARD8	Synechococcus_phage	1.8e-16	24.2
AVQ20689.1\|592954_593290_+	hypothetical protein	NA	NA	NA	NA
AVQ20690.1\|593390_594383_+	DNA-binding protein	A0A0S2MYH0	Enterococcus_phage	1.1e-30	31.7
AVQ20691.1\|594628_594841_+	hypothetical protein	NA	NA	NA	NA
AVQ20692.1\|594833_595034_+	hypothetical protein	NA	NA	NA	NA
AVQ20693.1\|595041_596175_+	hypothetical protein	A0A0E3U246	Fusobacterium_phage	1.3e-86	46.7
AVQ22167.1\|596316_597624_+	chromosome partitioning protein ParB	A0A0E3Y5D8	Fusobacterium_phage	8.3e-138	55.4
AVQ20694.1\|597638_598307_+	hypothetical protein	A0A0E3Y615	Fusobacterium_phage	9.7e-50	50.9
AVQ20695.1\|598432_598876_+	hypothetical protein	A0A0E3Y4U4	Fusobacterium_phage	2.4e-52	75.5
AVQ20696.1\|598862_600635_+\|terminase	terminase	A0A0E3U2N4	Fusobacterium_phage	6.5e-295	82.1
AVQ20697.1\|600631_600850_+	hypothetical protein	A0A0E3U247	Fusobacterium_phage	1.9e-26	79.2
AVQ20698.1\|600859_602401_+\|portal	phage portal protein	A0A0E3Y693	Fusobacterium_phage	4.7e-249	83.3
AVQ20699.1\|602387_603503_+\|protease	Clp protease ClpP	A0A0E3Y6E9	Fusobacterium_phage	3.0e-112	59.0
AVQ20700.1\|603520_603841_+	hypothetical protein	A0A0E3Y5E3	Fusobacterium_phage	2.0e-29	59.8
AVQ20701.1\|603853_604861_+\|capsid	minor capsid protein E	A0A0E3U2N5	Fusobacterium_phage	2.5e-134	70.1
AVQ20702.1\|604887_605205_+	hypothetical protein	NA	NA	NA	NA
AVQ20703.1\|605201_605516_+	hypothetical protein	A0A0E3Y618	Fusobacterium_phage	1.2e-31	64.4
AVQ20704.1\|605515_606106_+	hypothetical protein	A0A0E3Y4U7	Fusobacterium_phage	4.7e-40	49.0
AVQ20705.1\|606102_606570_+	hypothetical protein	A0A0E3Y698	Fusobacterium_phage	2.3e-50	58.9
AVQ20706.1\|606556_606826_+	hypothetical protein	A0A0E3U2N7	Fusobacterium_phage	2.1e-11	45.7
AVQ20707.1\|606826_608227_+\|tail	phage tail protein	A0A0E3U251	Fusobacterium_phage	5.8e-214	76.4
AVQ20708.1\|608236_608770_+\|tail	phage tail protein	A0A0E3Y6F4	Fusobacterium_phage	4.6e-79	80.8
AVQ20709.1\|608779_609115_+	hypothetical protein	A0A0E3Y5E7	Fusobacterium_phage	1.7e-34	64.0
AVQ20710.1\|609289_609553_+	hypothetical protein	NA	NA	NA	NA
AVQ20711.1\|609620_612206_+\|tail	phage tail tape measure protein	A0A0E3U2N9	Fusobacterium_phage	5.5e-218	58.1
AVQ20712.1\|612195_612405_+	hypothetical protein	NA	NA	NA	NA
AVQ20713.1\|612407_613487_+	late control protein D	A0A0E3U253	Fusobacterium_phage	3.1e-138	69.1
AVQ20714.1\|613483_613999_+\|plate	phage baseplate assembly protein V	A0A0E3Y4V1	Fusobacterium_phage	4.2e-53	57.6
AVQ20715.1\|613998_614385_+	hypothetical protein	A0A0E3Y6A2	Fusobacterium_phage	2.1e-44	68.0
AVQ20716.1\|614384_614696_+	hypothetical protein	A0A0E3Y6F8	Fusobacterium_phage	4.8e-28	63.4
AVQ20717.1\|614692_615793_+\|plate	baseplate J protein	A0A0E3U2P1	Fusobacterium_phage	4.7e-142	66.3
AVQ20718.1\|615785_616349_+\|tail	phage tail protein I	A0A0E3U255	Fusobacterium_phage	1.3e-50	52.8
AVQ20719.1\|617538_618315_+	hypothetical protein	NA	NA	NA	NA
AVQ20720.1\|618331_618790_+	M15 family peptidase	U5PWQ2	Bacillus_phage	4.8e-08	39.8
AVQ20721.1\|618803_619172_+	hypothetical protein	A0A0E3Y6G3	Fusobacterium_phage	1.1e-50	77.1
AVQ20722.1\|619168_619420_+	hypothetical protein	NA	NA	NA	NA
AVQ20723.1\|619437_619815_+\|holin	holin	A0A0E3Y658	Fusobacterium_phage	1.9e-34	60.7
AVQ20724.1\|619842_620406_-	hypothetical protein	NA	NA	NA	NA
AVQ20725.1\|620402_621065_-	O-methyltransferase	NA	NA	NA	NA
AVQ20726.1\|621071_621965_-	EamA/RhaT family transporter	NA	NA	NA	NA
AVQ20727.1\|622049_623390_-	magnesium transporter	NA	NA	NA	NA
AVQ20728.1\|623525_624824_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
AVQ20729.1\|625267_626332_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
AVQ20730.1\|626765_628151_+	transporter	NA	NA	NA	NA
AVQ20731.1\|628154_629111_+	abortive phage resistance protein	NA	NA	NA	NA
AVQ20732.1\|629211_629679_+	hypothetical protein	NA	NA	NA	NA
AVQ20733.1\|630247_630805_+	tetratricopeptide repeat protein	NA	NA	NA	NA
AVQ20734.1\|630827_631373_+	J domain-containing protein	NA	NA	NA	NA
AVQ20735.1\|631411_632770_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	1.2e-30	35.4
AVQ20736.1\|632759_633710_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	3.3e-43	36.9
AVQ20737.1\|633712_634321_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AVQ20738.1\|634329_634764_+	hypothetical protein	NA	NA	NA	NA
AVQ20739.1\|635147_638462_+	hemin receptor	NA	NA	NA	NA
AVQ20740.1\|638772_639924_+	YARHG domain-containing protein	NA	NA	NA	NA
AVQ20741.1\|640064_641045_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

791318 : 795940

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ20869.1\|791318_791687_+	peptidase M15	A9DET4	Yersinia_phage	8.3e-27	47.9
AVQ20870.1\|791704_792805_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.8e-67	40.2
AVQ20871.1\|792801_793641_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	5.9e-20	30.3
AVQ20872.1\|793637_794213_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.6e-35	41.2
AVQ20873.1\|794191_795085_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.2e-101	61.5
AVQ20874.1\|795235_795940_-	acylneuraminate cytidylyltransferase family protein	A0A1B1IVD3	uncultured_Mediterranean_phage	1.1e-14	30.1

DBSCAN-SWA_3

1596212 : 1603926

Prochlorococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ21588.1\|1596212_1596833_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	5.7e-20	35.5
AVQ21589.1\|1597002_1598229_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
AVQ21590.1\|1598246_1599749_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	2.7e-68	45.9
AVQ21591.1\|1599750_1600311_-	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	5.0e-23	35.7
AVQ21592.1\|1600298_1601315_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	6.4e-69	44.2
AVQ21593.1\|1601328_1602678_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.0e-45	32.5
AVQ21594.1\|1602705_1603422_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	5.2e-41	41.9
AVQ21595.1\|1603449_1603926_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.8e-29	47.4

DBSCAN-SWA_4

2251964 : 2255858

uncultured_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ22109.1\|2251964_2252408_+	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	1.4e-07	30.2
AVQ22110.1\|2252394_2253063_+	7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	9.4e-45	47.9
AVQ22111.1\|2253063_2253639_+	GTP cyclohydrolase I FolE	S4U0J3	uncultured_phage	4.7e-45	52.3
AVQ22112.1\|2253647_2254343_+	7-cyano-7-deazaguanine synthase QueC	A0A1U9WRB5	Streptococcus_virus	1.3e-65	56.0
AVQ22113.1\|2254343_2254826_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	6.3e-51	72.9
AVQ22114.1\|2254889_2255858_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.3e-31	31.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage