CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028108	Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome	0 crisprs	cas14j,cas14k,DEDDh,csa3,cas4,cas2,cas1,cas3,cas5,cas7,cas8b2,cas6,WYL,DinG,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,PD-DExK,c2c9_V-U4	0	0	5	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

763650 : 769468

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ24889.1\|763650_764124_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	9.0e-26	49.0
AVQ24890.1\|764164_764878_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	2.5e-43	42.8
AVQ24891.1\|764924_766274_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.3e-48	30.9
AVQ24892.1\|766321_767341_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A127KMF9	Cyanophage	1.1e-65	44.1
AVQ24893.1\|767328_767913_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.0e-24	38.5
AVQ24894.1\|767953_769468_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	2.0e-58	43.6

DBSCAN-SWA_2

1532426 : 1597535

Bacillus_phage(15.38%)

transposase,tRNA,tail,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ25557.1\|1532426_1533347_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AVQ25558.1\|1533452_1534967_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA
AVQ25559.1\|1534990_1535668_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
AVQ25560.1\|1535763_1537008_-\|transposase	transposase	A0A1L2BWW3	Bacteriophage	4.4e-64	39.9
AVQ26478.1\|1537243_1537423_-	hypothetical protein	NA	NA	NA	NA
AVQ25561.1\|1537436_1537553_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVQ25562.1\|1537875_1538589_+	energy-coupling factor ABC transporter permease	NA	NA	NA	NA
AVQ25563.1\|1538600_1538918_+	energy-coupling factor ABC transporter substrate-binding protein	NA	NA	NA	NA
AVQ25564.1\|1538918_1539698_+	cobalt ECF transporter T component CbiQ	NA	NA	NA	NA
AVQ25565.1\|1539699_1540542_+	energy-coupling factor ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.8e-14	27.6
AVQ25566.1\|1540688_1548236_-	autotransporter-associated N-terminal domain-containing protein	NA	NA	NA	NA
AVQ25567.1\|1548553_1549297_-	DNA alkylation repair protein	NA	NA	NA	NA
AVQ25568.1\|1549446_1550259_-	Eco47II family restriction endonuclease	NA	NA	NA	NA
AVQ26479.1\|1550260_1551253_-	DNA (cytosine-5-)-methyltransferase	F2Y148	Organic_Lake_phycodnavirus	3.8e-74	44.8
AVQ25569.1\|1551375_1552947_-	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	2.0e-08	40.9
AVQ25570.1\|1552980_1553718_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
AVQ25571.1\|1554428_1554734_+	hypothetical protein	NA	NA	NA	NA
AVQ25572.1\|1554793_1555903_-	amino-acid racemase	NA	NA	NA	NA
AVQ25573.1\|1555924_1557250_-	D-serine ammonia-lyase	NA	NA	NA	NA
AVQ25574.1\|1557275_1558625_-	GntP family permease	NA	NA	NA	NA
AVQ26480.1\|1558910_1559468_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AVQ25575.1\|1559549_1560173_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	2.2e-08	36.2
AVQ25576.1\|1560195_1560648_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
AVQ25577.1\|1560659_1561559_+	DUF535 domain-containing protein	NA	NA	NA	NA
AVQ25578.1\|1561631_1562663_+	low specificity L-threonine aldolase	NA	NA	NA	NA
AVQ25579.1\|1562671_1563538_+	RluA family pseudouridine synthase	NA	NA	NA	NA
AVQ25580.1\|1563718_1564726_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AVQ25581.1\|1564816_1566013_+	phosphoglycerate kinase	NA	NA	NA	NA
AVQ25582.1\|1566058_1566412_+	FMN-binding protein	NA	NA	NA	NA
AVQ25583.1\|1566428_1566809_+	FMN-binding protein	NA	NA	NA	NA
AVQ25584.1\|1566836_1567616_-	GTP pyrophosphokinase	NA	NA	NA	NA
AVQ25585.1\|1567630_1568359_-	hypothetical protein	NA	NA	NA	NA
AVQ25586.1\|1568604_1569408_-	SIR2 family protein	NA	NA	NA	NA
AVQ25587.1\|1569562_1571002_+	cardiolipin synthase	NA	NA	NA	NA
AVQ25588.1\|1571014_1571938_+	homoserine kinase	NA	NA	NA	NA
AVQ25589.1\|1571953_1572868_+\|protease	protease	NA	NA	NA	NA
AVQ25590.1\|1572893_1575728_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.2e-287	55.2
AVQ25591.1\|1575845_1576001_+	hypothetical protein	NA	NA	NA	NA
AVQ25592.1\|1576049_1576697_-	hemolysin III	NA	NA	NA	NA
AVQ25593.1\|1577862_1578966_+\|transposase	transposase	S6AND0	Bacillus_phage	8.9e-101	50.3
AVQ25594.1\|1579587_1580484_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	1.7e-09	33.3
AVQ25595.1\|1580594_1582535_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.1e-61	30.0
AVQ25596.1\|1582544_1583012_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
AVQ25597.1\|1583141_1583417_+	hypothetical protein	NA	NA	NA	NA
AVQ25598.1\|1583432_1584773_+	hypothetical protein	NA	NA	NA	NA
AVQ25599.1\|1584794_1586276_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	4.9e-94	43.2
AVQ25600.1\|1586354_1586711_+	CidA/LrgA family protein	NA	NA	NA	NA
AVQ25601.1\|1586710_1587403_+	LrgB family protein	NA	NA	NA	NA
AVQ25602.1\|1587412_1588021_+	copper homeostasis protein CutC	NA	NA	NA	NA
AVQ25603.1\|1588214_1589753_+	aminobenzoyl-glutamate transporter	NA	NA	NA	NA
AVQ25604.1\|1589886_1590876_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AVQ25605.1\|1591074_1591620_+	hypothetical protein	NA	NA	NA	NA
AVQ25606.1\|1591644_1592202_+	HrgC protein	NA	NA	NA	NA
AVQ25607.1\|1592391_1593537_+\|transposase	transposase	A0A288TXV8	Enterococcus_phage	3.2e-117	61.0
AVQ25608.1\|1593805_1593997_+	histidine kinase	NA	NA	NA	NA
AVQ25609.1\|1594113_1595799_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-25	34.3
AVQ25610.1\|1595785_1596214_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVQ25611.1\|1596431_1597535_-\|transposase	transposase	S6AND0	Bacillus_phage	3.6e-102	50.8

DBSCAN-SWA_3

1996405 : 2098911

Fusobacterium_phage(34.78%)

transposase,capsid,bacteriocin,portal,integrase,tail,holin,protease,terminase,plate

attL 2034433:2034449|attR 2084016:2084032

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ25942.1\|1996405_1997509_-\|transposase	transposase	S6AND0	Bacillus_phage	1.1e-101	50.8
AVQ25943.1\|1998270_2015181_-	hypothetical protein	NA	NA	NA	NA
AVQ25944.1\|2015663_2016497_+	cytoplasmic protein	NA	NA	NA	NA
AVQ25945.1\|2016610_2017441_+	cytoplasmic protein	NA	NA	NA	NA
AVQ25946.1\|2017564_2018395_+	cytoplasmic protein	NA	NA	NA	NA
AVQ25947.1\|2018460_2019381_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
AVQ25948.1\|2019484_2019919_+	50S ribosomal protein L13	NA	NA	NA	NA
AVQ25949.1\|2019934_2020336_+	30S ribosomal protein S9	NA	NA	NA	NA
AVQ25950.1\|2020391_2020955_-	flavin reductase family protein	NA	NA	NA	NA
AVQ25951.1\|2021071_2021596_+	GNAT family acetyltransferase	NA	NA	NA	NA
AVQ25952.1\|2021619_2022369_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AVQ25953.1\|2022448_2022757_+	thioredoxin	NA	NA	NA	NA
AVQ25954.1\|2022751_2022928_-	riboflavin synthase subunit alpha	NA	NA	NA	NA
AVQ25955.1\|2022995_2023421_-	HicB family protein	I3NLB2	Bifidobacterium_phage	2.2e-15	32.4
AVQ25956.1\|2023457_2023649_-	type II toxin-antitoxin system HicA family toxin	F0PIL1	Enterococcus_phage	4.6e-05	46.0
AVQ25957.1\|2023752_2024799_-	ribonucleotide-diphosphate reductase subunit beta	M4QT54	Vibrio_phage	1.7e-80	46.0
AVQ25958.1\|2024779_2027047_-	ribonucleoside-diphosphate reductase subunit alpha	A2PYM7	Cyanophage	5.5e-145	39.1
AVQ25959.1\|2027046_2027250_-	NrdH-redoxin	NA	NA	NA	NA
AVQ25960.1\|2027539_2028214_+	flavodoxin	NA	NA	NA	NA
AVQ25961.1\|2033415_2034069_-	hypothetical protein	NA	NA	NA	NA
AVQ25962.1\|2034068_2035115_-	ATP-binding protein	NA	NA	NA	NA
2034433:2034449	attL	NA	NA	NA	NA
AVQ25963.1\|2035241_2038019_-	hypothetical protein	NA	NA	NA	NA
AVQ25964.1\|2041832_2045081_-	hypothetical protein	NA	NA	NA	NA
AVQ26507.1\|2045090_2048201_-	hypothetical protein	NA	NA	NA	NA
AVQ25965.1\|2048519_2049785_-	hypothetical protein	NA	NA	NA	NA
AVQ25966.1\|2049836_2050373_-	hypothetical protein	NA	NA	NA	NA
AVQ25967.1\|2050374_2050704_-	hypothetical protein	NA	NA	NA	NA
AVQ25968.1\|2050718_2051327_-	hypothetical protein	NA	NA	NA	NA
AVQ25969.1\|2051341_2051989_-	hypothetical protein	NA	NA	NA	NA
AVQ25970.1\|2052012_2055417_-	DUF87 domain-containing protein	NA	NA	NA	NA
AVQ25971.1\|2055429_2056257_-	WYL domain-containing protein	NA	NA	NA	NA
AVQ25972.1\|2056506_2056719_-	hypothetical protein	NA	NA	NA	NA
AVQ25973.1\|2056873_2057395_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
AVQ25974.1\|2057593_2058838_-\|transposase	transposase	A0A1L2BWW3	Bacteriophage	1.3e-63	39.6
AVQ25975.1\|2059290_2059407_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVQ25976.1\|2059793_2060981_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
AVQ25977.1\|2061214_2061478_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
AVQ25978.1\|2061491_2062496_+	3-deoxy-7-phosphoheptulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.0e-11	25.6
AVQ25979.1\|2062495_2063221_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AVQ25980.1\|2063225_2063789_+	hypothetical protein	NA	NA	NA	NA
AVQ25981.1\|2063823_2065407_-	potassium/proton antiporter	NA	NA	NA	NA
AVQ25982.1\|2065728_2066475_-	peroxide stress protein YaaA	NA	NA	NA	NA
AVQ25983.1\|2066475_2067033_-	hypothetical protein	NA	NA	NA	NA
AVQ25984.1\|2067165_2068467_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	9.1e-153	65.6
AVQ25985.1\|2068490_2069918_-	pyruvate kinase PykF	NA	NA	NA	NA
AVQ25986.1\|2070656_2070914_-	hypothetical protein	NA	NA	NA	NA
AVQ25987.1\|2071299_2072322_-	CRISPR-associated protein Cas5	NA	NA	NA	NA
AVQ25988.1\|2072581_2072779_-	hypothetical protein	NA	NA	NA	NA
AVQ26508.1\|2072971_2073415_-\|holin	holin	A0A0E3Y658	Fusobacterium_phage	1.1e-28	53.0
AVQ25989.1\|2073455_2073815_-	DUF1353 domain-containing protein	A0A0E3Y4V5	Fusobacterium_phage	9.5e-52	79.0
AVQ25990.1\|2073801_2074050_-	hypothetical protein	NA	NA	NA	NA
AVQ25991.1\|2074036_2074486_-	M15 family peptidase	A0A0E3Y6B0	Fusobacterium_phage	8.2e-37	50.0
AVQ25992.1\|2074573_2075383_-	hypothetical protein	A0A0E3U258	Fusobacterium_phage	1.5e-20	48.2
AVQ25993.1\|2075574_2076549_-\|integrase	integrase	A0A0E3U2P3	Fusobacterium_phage	1.0e-156	85.5
AVQ26509.1\|2076853_2077129_-	hypothetical protein	NA	NA	NA	NA
AVQ25994.1\|2077149_2077482_+	hypothetical protein	A0A0E3Y626	Fusobacterium_phage	2.9e-55	100.0
AVQ25995.1\|2078497_2079127_-\|tail	phage tail protein I	NA	NA	NA	NA
AVQ25996.1\|2079123_2080236_-\|bacteriocin	bacteriocin	A0A0E3U2P1	Fusobacterium_phage	7.7e-52	35.0
AVQ25997.1\|2080232_2080535_-	hypothetical protein	NA	NA	NA	NA
AVQ25998.1\|2080531_2081041_-	hypothetical protein	NA	NA	NA	NA
AVQ26510.1\|2081037_2081538_-\|plate	phage baseplate protein	NA	NA	NA	NA
AVQ25999.1\|2081506_2082022_-	hypothetical protein	NA	NA	NA	NA
AVQ26000.1\|2082014_2082686_-	hypothetical protein	A0A0C5AJ59	Bacteriophage	4.1e-16	27.6
AVQ26001.1\|2082829_2083612_-	hypothetical protein	NA	NA	NA	NA
AVQ26511.1\|2083592_2083808_-	hypothetical protein	NA	NA	NA	NA
AVQ26002.1\|2083936_2084104_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
2084016:2084032	attR	NA	NA	NA	NA
AVQ26003.1\|2084176_2084398_-\|tail	phage tail protein	NA	NA	NA	NA
AVQ26004.1\|2084394_2087106_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	4.5e-37	30.3
AVQ26005.1\|2087291_2087633_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AVQ26006.1\|2087643_2088171_-\|tail	phage tail protein	A0A2H4JBU0	uncultured_Caudovirales_phage	6.1e-07	26.0
AVQ26007.1\|2088185_2089628_-\|tail	phage tail sheath protein	A0A0E3U251	Fusobacterium_phage	8.2e-62	34.4
AVQ26512.1\|2089692_2090460_-	hypothetical protein	NA	NA	NA	NA
AVQ26008.1\|2090467_2090671_-	hypothetical protein	NA	NA	NA	NA
AVQ26009.1\|2090793_2090973_-	hypothetical protein	NA	NA	NA	NA
AVQ26010.1\|2091034_2091241_-	hypothetical protein	NA	NA	NA	NA
AVQ26011.1\|2091242_2091728_-	hypothetical protein	NA	NA	NA	NA
AVQ26012.1\|2091724_2092294_-	hypothetical protein	NA	NA	NA	NA
AVQ26013.1\|2092290_2092623_-	hypothetical protein	NA	NA	NA	NA
AVQ26014.1\|2092625_2092859_-	hypothetical protein	NA	NA	NA	NA
AVQ26015.1\|2092870_2093884_-\|capsid	minor capsid protein E	A0A0C5ABI0	Bacteriophage	2.1e-35	27.7
AVQ26016.1\|2093883_2094219_-	hypothetical protein	NA	NA	NA	NA
AVQ26017.1\|2094215_2095301_-\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	3.9e-48	37.5
AVQ26018.1\|2095257_2096817_-\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	3.8e-137	49.0
AVQ26019.1\|2096855_2097050_-	hypothetical protein	NA	NA	NA	NA
AVQ26020.1\|2097081_2098911_-\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	4.8e-160	47.0

DBSCAN-SWA_4

2105495 : 2114397

Brevibacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ26038.1\|2105495_2106893_-	ATP-dependent helicase	S5MA26	Brevibacillus_phage	9.5e-140	52.6
AVQ26039.1\|2106873_2107182_-	VRR-NUC domain-containing protein	Q4ZD25	Staphylococcus_phage	7.2e-16	47.8
AVQ26040.1\|2107479_2109936_-	virulence-associated protein E	A0A0A7RTG3	Clostridium_phage	8.4e-184	43.1
AVQ26041.1\|2109949_2110591_-	DUF3310 domain-containing protein	Q7Y4J5	Streptococcus_phage	2.4e-05	38.0
AVQ26042.1\|2110600_2112571_-	DNA polymerase I	H7BVQ1	unidentified_phage	7.7e-212	55.2
AVQ26043.1\|2112629_2113208_-	DUF2815 domain-containing protein	S5MC21	Brevibacillus_phage	1.3e-37	45.9
AVQ26044.1\|2113230_2114397_-	DUF2800 domain-containing protein	A0A0A7S066	Clostridium_phage	2.2e-89	46.3

DBSCAN-SWA_5

2411733 : 2420148

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ26300.1\|2411733_2412741_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-19	32.2
AVQ26301.1\|2412733_2413708_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	7.1e-09	33.0
AVQ26302.1\|2414187_2415153_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	1.5e-83	50.0
AVQ26303.1\|2415222_2416146_-	hypothetical protein	A0A0M4S6X1	Salmonella_phage	9.6e-48	38.8
AVQ26304.1\|2416537_2418361_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1H1Z3	Paramecium_bursaria_Chlorella_virus	7.8e-102	38.0
AVQ26305.1\|2418393_2420148_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	4.7e-112	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage