CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027774	Variovorax sp. PMC12 chromosome 2, complete sequence	0 crisprs	csa3,PD-DExK	0	0	0	0
CP027773	Variovorax sp. PMC12 chromosome 1, complete sequence	0 crisprs	RT,DEDDh,DinG,Cas9_archaeal,PD-DExK,cas3,csa3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1531883 : 1565339

Ralstonia_phage(69.23%)

tail,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ80729.1\|1531883_1534451_+	DNA-dependent RNA polymerase	A0A2R2ZGE5	Ralstonia_phage	4.9e-275	56.1
AVQ80730.1\|1534561_1534876_+	hypothetical protein	NA	NA	NA	NA
AVQ80731.1\|1534886_1535087_+	hypothetical protein	A0A2D2W4Y9	Ralstonia_phage	2.6e-06	48.9
AVQ80732.1\|1535083_1535431_+	hypothetical protein	A0A077KRX3	Ralstonia_phage	1.7e-10	41.7
AVQ80733.1\|1535604_1536309_+	DUF2815 domain-containing protein	A0A2R2ZGF7	Ralstonia_phage	1.8e-54	52.8
AVQ80734.1\|1536286_1536703_+	hypothetical protein	A0A0U1ZDL9	Ralstonia_phage	2.4e-43	67.5
AVQ80735.1\|1536706_1537147_+	lysozyme	A0A2R2ZGC0	Ralstonia_phage	2.9e-50	66.4
AVQ80736.1\|1537143_1537323_+	hypothetical protein	NA	NA	NA	NA
AVQ80737.1\|1537319_1537640_+	hypothetical protein	NA	NA	NA	NA
AVQ80738.1\|1537902_1538136_+	hypothetical protein	NA	NA	NA	NA
AVQ80739.1\|1538135_1538459_+	hypothetical protein	NA	NA	NA	NA
AVQ80740.1\|1538555_1540178_+	DNA primase	L7TLT7	Rhizobium_phage	5.3e-158	58.0
AVQ80741.1\|1540104_1540551_+	hypothetical protein	NA	NA	NA	NA
AVQ80742.1\|1540547_1540949_+	hypothetical protein	NA	NA	NA	NA
AVQ80743.1\|1540957_1542820_+	DNA polymerase	A0A2R2ZGG6	Ralstonia_phage	1.2e-198	56.5
AVQ80744.1\|1542819_1543029_+	hypothetical protein	A0A2R2ZGG1	Ralstonia_phage	2.2e-08	42.6
AVQ84510.1\|1543296_1543992_+	exonuclease	A0A2D2W4Z8	Ralstonia_phage	9.1e-51	45.6
AVQ80745.1\|1544187_1544571_+	hypothetical protein	F8TV45	EBPR_siphovirus	8.6e-19	43.6
AVQ80746.1\|1544567_1544822_+	hypothetical protein	A0A2D2W503	Ralstonia_phage	3.8e-23	70.5
AVQ80747.1\|1544818_1545247_+	hypothetical protein	NA	NA	NA	NA
AVQ80748.1\|1545243_1545663_-	hypothetical protein	NA	NA	NA	NA
AVQ80749.1\|1545682_1547251_+\|tail	phage tail protein	A0A2R2ZGG8	Ralstonia_phage	9.0e-147	55.5
AVQ80750.1\|1547216_1547429_+	hypothetical protein	NA	NA	NA	NA
AVQ80751.1\|1547391_1547790_-	hypothetical protein	NA	NA	NA	NA
AVQ80752.1\|1547788_1548184_+	hypothetical protein	A0A076YJ53	Mesorhizobium_phage	1.4e-08	35.8
AVQ80753.1\|1548180_1548606_+	hypothetical protein	A0A2I7RPE9	Vibrio_phage	1.9e-19	39.4
AVQ80754.1\|1548721_1549663_+\|capsid	capsid protein	A0A2D2W509	Ralstonia_phage	8.2e-79	65.4
AVQ80755.1\|1549734_1550325_+\|tail	phage tail protein	A0A2R2ZGD2	Ralstonia_phage	4.7e-48	53.8
AVQ80756.1\|1550321_1552679_+	hypothetical protein	L7TLW2	Rhizobium_phage	3.8e-109	32.4
AVQ80757.1\|1552671_1553124_+	hypothetical protein	L7TJ86	Rhizobium_phage	1.5e-17	38.6
AVQ80758.1\|1553116_1553650_+	hypothetical protein	A0A2R2ZGD1	Ralstonia_phage	9.5e-08	34.6
AVQ80759.1\|1553646_1555974_+	hypothetical protein	A0A2D2W5A9	Ralstonia_phage	2.9e-93	33.1
AVQ80760.1\|1556018_1560704_+	lytic transglycosylase	A0A2D2W521	Ralstonia_phage	0.0e+00	53.1
AVQ80761.1\|1560777_1561815_+	hypothetical protein	A0A2H4YGD4	Pseudomonas_virus	9.2e-15	35.6
AVQ80762.1\|1562219_1562501_+	hypothetical protein	D5LGZ0	Escherichia_phage	2.4e-10	47.9
AVQ80763.1\|1562509_1562992_+	hypothetical protein	NA	NA	NA	NA
AVQ80764.1\|1562994_1563246_+	hypothetical protein	NA	NA	NA	NA
AVQ80765.1\|1563242_1563494_+	hypothetical protein	A0A2D2W519	Ralstonia_phage	2.8e-10	48.2
AVQ84511.1\|1563647_1565339_+	DNA maturase B	A0A2R2ZGE7	Ralstonia_phage	4.4e-216	63.7

DBSCAN-SWA_2

2612909 : 2623150

Rhodoferax_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ81639.1\|2612909_2615450_-	hypothetical protein	A0A0E3JI98	Rhodoferax_phage	3.5e-23	46.2
AVQ81640.1\|2616464_2617028_-	hypothetical protein	A0A2I7S3K6	Vibrio_phage	2.0e-08	28.0
AVQ81641.1\|2617020_2617221_-	hypothetical protein	NA	NA	NA	NA
AVQ81642.1\|2617223_2617694_-	hypothetical protein	Q775E1	Bordetella_phage	1.8e-42	55.4
AVQ81643.1\|2617690_2618020_-	hypothetical protein	NA	NA	NA	NA
AVQ81644.1\|2618040_2618376_-	hypothetical protein	NA	NA	NA	NA
AVQ81645.1\|2618385_2619810_-	hypothetical protein	M4QP69	Synechococcus_phage	2.2e-27	36.1
AVQ81646.1\|2619822_2620227_-	hypothetical protein	A0A0K1LM71	Caulobacter_phage	4.2e-24	50.8
AVQ81647.1\|2620295_2621330_-	hypothetical protein	NA	NA	NA	NA
AVQ81648.1\|2621326_2623150_-	hypothetical protein	X5IGB8	Pseudomonas_phage	1.2e-17	22.7

DBSCAN-SWA_3

3312643 : 3320475

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ82239.1\|3312643_3313360_-	nucleoside-diphosphate-sugar pyrophosphorylase	I7I009	Enterobacteria_phage	7.5e-16	28.7
AVQ82240.1\|3313373_3314378_-	NAD-dependent dehydratase	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	4.4e-22	28.5
AVQ84641.1\|3314415_3315312_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.4e-96	59.9
AVQ82241.1\|3315335_3316226_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.8e-26	34.2
AVQ82242.1\|3316222_3317293_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.9e-88	47.3
AVQ82243.1\|3317741_3319049_+	amino acid dehydrogenase	NA	NA	NA	NA
AVQ82244.1\|3319068_3320475_-	RNA-splicing ligase RtcB	A0A291L9X2	Bordetella_phage	9.5e-31	31.5

DBSCAN-SWA_4

3410199 : 3418723

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ82302.1\|3410199_3411393_-	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	2.0e-13	28.7
AVQ82303.1\|3411926_3412634_-	uracil-DNA glycosylase	A0A0B5IW78	Pandoravirus	1.6e-47	46.6
AVQ82304.1\|3412630_3413431_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.8e-56	49.8
AVQ82305.1\|3413462_3414485_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.3e-73	45.9
AVQ82306.1\|3414506_3415166_-	lysine transporter LysE	NA	NA	NA	NA
AVQ82307.1\|3415182_3416241_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
AVQ82308.1\|3416247_3416832_-	anthranilate/aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.9e-58	57.4
AVQ84652.1\|3416828_3417221_-	GxxExxY protein	A9YW17	Ostreococcus_tauri_virus	2.9e-06	32.0
AVQ84653.1\|3417220_3418723_-	anthranilate synthase component I	S4VT78	Pandoravirus	4.7e-36	28.9

DBSCAN-SWA_5

5693271 : 5702983

Burkholderia_virus(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ84827.1\|5693271_5693697_-	hypothetical protein	A0A220NR71	Mycobacterium_phage	3.3e-19	43.3
AVQ84252.1\|5693680_5693974_-	DUF4031 domain-containing protein	A0A291LA06	Bordetella_phage	1.1e-21	65.9
AVQ84253.1\|5694209_5694749_-	hypothetical protein	NA	NA	NA	NA
AVQ84254.1\|5694745_5695507_-	SAM-dependent methyltransferase	A0A1I9KFG8	Aeromonas_phage	1.4e-33	48.5
AVQ84828.1\|5695503_5695806_-	RNA-binding protein	A4PE68	Ralstonia_virus	1.1e-29	69.7
AVQ84255.1\|5695802_5697608_-	modification methylase	Q5QF27	Pseudomonas_virus	6.4e-165	48.8
AVQ84256.1\|5697665_5697890_-	hypothetical protein	NA	NA	NA	NA
AVQ84257.1\|5697886_5698474_-	hypothetical protein	I6NV25	Burkholderia_virus	2.5e-25	39.3
AVQ84258.1\|5698590_5699391_-	hypothetical protein	I6WAZ8	Burkholderia_virus	1.7e-48	44.1
AVQ84259.1\|5699430_5699811_-	hypothetical protein	I6XKT1	Burkholderia_virus	3.5e-20	51.5
AVQ84829.1\|5699887_5700175_-	KTSC domain-containing protein	NA	NA	NA	NA
AVQ84260.1\|5700183_5701902_-	endonuclease	U6C712	Ralstonia_phage	2.2e-98	39.9
AVQ84830.1\|5701912_5702983_-	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	7.2e-71	65.9

DBSCAN-SWA_6

5722570 : 5740499

Pseudomonas_phage(64.29%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVQ84285.1\|5722570_5723677_+	hypothetical protein	A0A0U1T6E0	Pseudomonas_phage	8.2e-54	46.5
AVQ84286.1\|5723718_5725008_+\|capsid	N4-gp56 family major capsid protein	L7TIC0	Pseudomonas_virus	1.7e-159	64.1
AVQ84287.1\|5725070_5725550_+	hypothetical protein	A0A2K8HNV7	Pseudomonas_phage	3.0e-37	57.2
AVQ84288.1\|5725608_5726046_+	hypothetical protein	NA	NA	NA	NA
AVQ84289.1\|5726049_5726727_+	hypothetical protein	L7TH94	Pseudomonas_virus	1.4e-59	56.6
AVQ84290.1\|5726723_5726960_+	hypothetical protein	NA	NA	NA	NA
AVQ84291.1\|5726940_5727348_+	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	2.0e-66	93.3
AVQ84292.1\|5727365_5727701_+	hypothetical protein	A0A0U1VZM2	Pseudomonas_phage	1.9e-30	60.4
AVQ84293.1\|5727770_5728709_+	hypothetical protein	NA	NA	NA	NA
AVQ84294.1\|5728712_5729051_+	hypothetical protein	A0A1L2C9I2	Pseudomonas_phage	1.8e-15	50.0
AVQ84295.1\|5729060_5729720_+	hypothetical protein	NA	NA	NA	NA
AVQ84296.1\|5729747_5730101_+	hypothetical protein	A0A1L2C9I2	Pseudomonas_phage	6.5e-13	44.0
AVQ84297.1\|5730487_5733022_+	hypothetical protein	A0A2K8HKA1	Pseudomonas_phage	3.3e-308	59.7
AVQ84298.1\|5733021_5734212_+	hypothetical protein	A0A2K8HL79	Pseudomonas_phage	3.6e-156	69.9
AVQ84299.1\|5734284_5734860_+	hypothetical protein	L7TIC9	Pseudomonas_virus	7.5e-67	72.6
AVQ84300.1\|5734862_5737463_+	hypothetical protein	A0A0U1W0G7	Pseudomonas_phage	0.0e+00	70.0
AVQ84834.1\|5738040_5738607_+	hypothetical protein	Q5QF56	Pseudomonas_virus	4.8e-66	66.7
AVQ84835.1\|5738606_5740499_+	hypothetical protein	L7THA5	Pseudomonas_virus	4.3e-135	83.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage