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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020396 Burkholderia vietnamiensis strain FDAARGOS_239 chromosome 2, complete sequence 0 crisprs csa3,cas3,DinG,DEDDh 0 0 1 0
CP020395 Burkholderia vietnamiensis strain FDAARGOS_239 chromosome 3, complete sequence 0 crisprs csa3 0 0 89 0
CP020394 Burkholderia vietnamiensis strain FDAARGOS_239 chromosome 1, complete sequence 0 crisprs DEDDh,cas3,WYL,DinG,PD-DExK 0 0 3 0
CP020393 Burkholderia vietnamiensis strain FDAARGOS_239 plasmid unnamed, complete sequence 0 crisprs NA 0 0 7 0

Results visualization

1. CP020396
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1189666 : 1237827 39 Chrysochromulina_ericina_virus(16.67%) transposase,protease,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP020395
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 15407 4 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_2 27998 : 29708 1 Klosneuvirus(100.0%) holin NA
DBSCAN-SWA_3 46788 : 49451 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 53438 : 54101 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_5 57227 : 59519 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_6 62554 : 63952 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_7 74621 : 78414 2 Loktanella_phage(50.0%) protease NA
DBSCAN-SWA_8 82643 : 88806 5 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_9 92138 : 99670 7 Clostridium_botulinum_C_phage(33.33%) NA NA
DBSCAN-SWA_10 106900 : 110486 4 Acanthamoeba_polyphaga_mimivirus(50.0%) NA NA
DBSCAN-SWA_11 117920 : 122231 6 Diadromus_pulchellus_ascovirus(50.0%) transposase NA
DBSCAN-SWA_12 126571 : 127042 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_13 132062 : 132512 1 Macacine_betaherpesvirus(100.0%) NA NA
DBSCAN-SWA_14 142130 : 142946 1 Feldmannia_irregularis_virus(100.0%) NA NA
DBSCAN-SWA_15 148132 : 149113 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_16 153379 : 154645 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_17 161790 : 162291 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_18 183110 : 186377 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_19 189657 : 191792 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_20 201629 : 203504 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_21 214896 : 218902 3 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_22 227551 : 234421 5 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_23 242602 : 246976 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_24 253752 : 263107 8 Mycobacterium_phage(25.0%) NA NA
DBSCAN-SWA_25 274340 : 276275 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_26 283510 : 284554 1 Shigella_phage(100.0%) NA NA
DBSCAN-SWA_27 296972 : 305038 3 Feldmannia_irregularis_virus(50.0%) NA NA
DBSCAN-SWA_28 313562 : 328120 10 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_29 335672 : 345324 10 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_30 352682 : 358457 5 Catovirus(33.33%) NA NA
DBSCAN-SWA_31 363828 : 365346 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_32 376583 : 385987 7 Feldmannia_irregularis_virus(25.0%) NA NA
DBSCAN-SWA_33 399403 : 406781 4 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_34 414180 : 414993 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_35 420284 : 421750 2 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_36 427472 : 428870 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_37 433974 : 434919 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_38 441928 : 446297 4 Moumouvirus(50.0%) NA NA
DBSCAN-SWA_39 451858 : 455953 2 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_40 476408 : 477104 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_41 483472 : 484768 1 Megavirus(100.0%) NA NA
DBSCAN-SWA_42 489403 : 543399 39 Burkholderia_phage(25.0%) transposase,integrase attL 496027:496043|attR 528532:528548
DBSCAN-SWA_43 556762 : 559245 2 uncultured_Caudovirales_phage(50.0%) transposase NA
DBSCAN-SWA_44 565262 : 567555 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_45 577635 : 586167 8 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_46 593852 : 595217 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_47 607902 : 609219 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_48 613852 : 615379 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_49 619019 : 621251 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_50 634839 : 635657 1 Mycobacterium_phage(100.0%) transposase NA
DBSCAN-SWA_51 642663 : 647974 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_52 662148 : 662985 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_53 674665 : 676195 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_54 684046 : 695535 4 Acanthocystis_turfacea_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_55 700560 : 703074 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_56 716305 : 717895 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_57 723325 : 727631 4 Trichoplusia_ni_ascovirus(50.0%) NA NA
DBSCAN-SWA_58 735169 : 738549 2 Ectocarpus_siliculosus_virus(50.0%) NA NA
DBSCAN-SWA_59 742684 : 743542 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_60 747051 : 747771 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_61 751862 : 754387 3 Burkholderia_virus(50.0%) NA NA
DBSCAN-SWA_62 759307 : 774756 13 Tupanvirus(20.0%) NA NA
DBSCAN-SWA_63 779624 : 780329 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_64 784362 : 787187 2 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_65 796100 : 797592 2 Cedratvirus(50.0%) NA NA
DBSCAN-SWA_66 803019 : 803313 1 Burkholderia_phage(100.0%) NA NA
DBSCAN-SWA_67 826239 : 828777 2 Yersinia_phage(50.0%) NA NA
DBSCAN-SWA_68 851357 : 852059 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_69 859511 : 863085 4 Prochlorococcus_phage(33.33%) transposase NA
DBSCAN-SWA_70 878760 : 879153 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_71 888426 : 891118 2 Burkholderia_virus(50.0%) transposase NA
DBSCAN-SWA_72 902085 : 903900 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_73 908876 : 910469 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_74 921686 : 940557 18 Macacine_betaherpesvirus(12.5%) NA NA
DBSCAN-SWA_75 947098 : 947668 1 Morganella_phage(100.0%) NA NA
DBSCAN-SWA_76 960375 : 961986 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_77 989492 : 991103 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_78 996277 : 997003 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_79 1004216 : 1006296 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_80 1014297 : 1017385 4 Lake_Baikal_phage(75.0%) NA NA
DBSCAN-SWA_81 1024638 : 1027472 4 unidentified_phage(50.0%) NA NA
DBSCAN-SWA_82 1046129 : 1046909 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_83 1051171 : 1052059 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_84 1078400 : 1116637 40 uncultured_Caudovirales_phage(62.5%) transposase,integrase attL 1105245:1105259|attR 1109300:1109314
DBSCAN-SWA_85 1125042 : 1186964 41 Escherichia_phage(21.43%) transposase NA
DBSCAN-SWA_86 1190406 : 1191426 1 Staphylococcus_prophage(100.0%) transposase NA
DBSCAN-SWA_87 1197127 : 1201375 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_88 1211676 : 1219829 4 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_89 1223154 : 1242159 3 Tupanvirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP020394
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 496192 : 505370 7 Roseobacter_phage(16.67%) NA NA
DBSCAN-SWA_2 759304 : 804580 40 Pseudomonas_phage(25.0%) tail,plate,transposase,tRNA NA
DBSCAN-SWA_3 3006507 : 3071717 58 Escherichia_phage(20.0%) transposase,integrase,tRNA attL 3016807:3016822|attR 3042915:3042930
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP020393
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 23916 30 Streptomyces_phage(100.0%) transposase NA
DBSCAN-SWA_2 38957 : 40757 1 Bdellovibrio_phage(100.0%) NA NA
DBSCAN-SWA_3 46293 : 48183 2 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_4 63405 : 65340 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_5 75577 : 76387 1 Clostridioides_phage(100.0%) NA NA
DBSCAN-SWA_6 83483 : 91313 7 Pseudomonas_virus(25.0%) NA NA
DBSCAN-SWA_7 98660 : 99704 1 Salmonella_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage