CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP023478	Klebsiella quasipneumoniae strain KPC142 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,DinG,WYL	6
CP023479	Klebsiella quasipneumoniae strain KPC142 plasmid pKQPS142a, complete sequence	0 crisprs	csa3,RT	3
CP023480	Klebsiella quasipneumoniae strain KPC142 plasmid pKQPS142b, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023478_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023478_1

99644-99755

Unclear

Consensus_repeat	Method
TCCCTGCTTGCGCTACGCTTAGCAGGGCTAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP023478_1

>merge|CP023478|1|99644-99755|CRISPRCasFinder
TCCCTGCTTGCGCTACGCTTAGCAGGGCTACAGTTCTGCGCTGTGCGTAAACCGGGTAAGGCGCCAGACGCCACCCGGGAATCCCTGCTTGCGCTACGCTTAGCAGGGCTAC

>CP023478|1|1|99644-99755|CRISPRCasFinder
TCCCTGCTTGCGCTACGCTTAGCAGGGCTAC	AGTTCTGCGCTGTGCGTAAACCGGGTAAGGCGCCAGACGCCACCCGGGAA
TCCCTGCTTGCGCTACGCTTAGCAGGGCTAC

Protein	Signature genes	Signature genes Name	Protein_function
CP023478.1\|AVR35484.1\|102985_103585_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369310
CP023478.1\|AVR35489.1\|108169_108859_-\|tRNA-guanosine-2'-O-methyltransferase	unknown	unknown	gnl\|CDD\|236837
CP023478.1\|AVR35486.1\|104126_104873_-\|Ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|182844
CP023478.1\|AVR35487.1\|105023_106034_-\|Fructose-1,6-bisphosphatase-class-2	unknown	unknown	gnl\|CDD\|224411
CP023478.1\|AVR35480.1\|98645_99635_+\|Sulfate-binding-protein	unknown	unknown	gnl\|CDD\|182700
CP023478.1\|AVR35479.1\|98247_98493_+\|Cell-division-protein-ZapB	unknown	unknown	gnl\|CDD\|185320
CP023478.1\|AVR35475.1\|92427_93819_-\|putative-purine-permease	unknown	unknown	gnl\|CDD\|225142
CP023478.1\|AVR35490.1\|109020_111141_-\|Guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236843
CP023478.1\|AVR35471.1\|86162_86885_+\|putative-sugar-isomerase	unknown	unknown	gnl\|CDD\|224651
CP023478.1\|AVR35478.1\|96953_97805_-\|Glycerol-uptake-facilitator-protein	unknown	unknown	gnl\|CDD\|238204
CP023478.1\|AVR35481.1\|99883_100648_+\|CDP-diacylglycerol-pyrophosphatase	unknown	unknown	gnl\|CDD\|235485
CP023478.1\|AVR35476.1\|94103_95306_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
CP023478.1\|AVR35488.1\|106082_108164_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
CP023478.1\|AVR35485.1\|103697_104126_+\|putative-protein-YiiR	unknown	unknown	gnl\|CDD\|225694
CP023478.1\|AVR35482.1\|100712_102017_+\|putative-sodium/sulfate-symporter	unknown	unknown	gnl\|CDD\|273267
CP023478.1\|AVR35477.1\|95420_96932_-\|Glycerol-kinase	unknown	unknown	gnl\|CDD\|234594
CP023478.1\|AVR35483.1\|102108_102876_-\|Triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP023478.1\|AVR35472.1\|87359_88739_-\|Phospho-alpha-glucosidase-pagL	unknown	unknown	gnl\|CDD\|133432
CP023478.1\|AVR35474.1\|90561_92277_-\|Protein-AsmA	unknown	unknown	gnl\|CDD\|282957
CP023478.1\|AVR35473.1\|88751_90311_-\|PTS-system-maltose-specific-EIICB-component	unknown	unknown	gnl\|CDD\|273925

Protein	Function_ID	Function_description	E-value
CP023478.1\|AVR35484.1\|102985_103585_-\|hypothetical-protein	gnl\|CDD\|369310	pfam07305, DUF1454, Protein of unknown function (DUF1454). This family consists of several Enterobacterial sequences of around 200 residues in length which are often known as YiiQ proteins. The function of this family is unknown.	3.26323e-98
CP023478.1\|AVR35489.1\|108169_108859_-\|tRNA-guanosine-2'-O-methyltransferase	gnl\|CDD\|236837	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional.	4.37693e-173
CP023478.1\|AVR35486.1\|104126_104873_-\|Ferredoxin--NADP-reductase	gnl\|CDD\|182844	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional.	0
CP023478.1\|AVR35487.1\|105023_106034_-\|Fructose-1,6-bisphosphatase-class-2	gnl\|CDD\|224411	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism].	0
CP023478.1\|AVR35480.1\|98645_99635_+\|Sulfate-binding-protein	gnl\|CDD\|182700	PRK10752, PRK10752, sulfate ABC transporter substrate-binding protein.	0
CP023478.1\|AVR35479.1\|98247_98493_+\|Cell-division-protein-ZapB	gnl\|CDD\|185320	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional.	1.50844e-19
CP023478.1\|AVR35475.1\|92427_93819_-\|putative-purine-permease	gnl\|CDD\|225142	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism].	2.20046e-141
CP023478.1\|AVR35490.1\|109020_111141_-\|Guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|236843	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase.	0
CP023478.1\|AVR35471.1\|86162_86885_+\|putative-sugar-isomerase	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	8.25807e-21
CP023478.1\|AVR35478.1\|96953_97805_-\|Glycerol-uptake-facilitator-protein	gnl\|CDD\|238204	cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.	5.4888e-82
CP023478.1\|AVR35481.1\|99883_100648_+\|CDP-diacylglycerol-pyrophosphatase	gnl\|CDD\|235485	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional.	1.22001e-155
CP023478.1\|AVR35476.1\|94103_95306_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	0
CP023478.1\|AVR35488.1\|106082_108164_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
CP023478.1\|AVR35485.1\|103697_104126_+\|putative-protein-YiiR	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	2.20766e-24
CP023478.1\|AVR35482.1\|100712_102017_+\|putative-sodium/sulfate-symporter	gnl\|CDD\|273267	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter. The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. [Transport and binding proteins, Anions, Transport and binding proteins, Cations and iron carrying compounds].	3.90458e-23
CP023478.1\|AVR35477.1\|95420_96932_-\|Glycerol-kinase	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
CP023478.1\|AVR35483.1\|102108_102876_-\|Triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	3.18645e-141
CP023478.1\|AVR35472.1\|87359_88739_-\|Phospho-alpha-glucosidase-pagL	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	5.46813e-142
CP023478.1\|AVR35474.1\|90561_92277_-\|Protein-AsmA	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	2.35374e-17
CP023478.1\|AVR35473.1\|88751_90311_-\|PTS-system-maltose-specific-EIICB-component	gnl\|CDD\|273925	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.14704e-109

>CP023478.1|AVR35480.1|98645_99635_+|Sulfate-binding-protein
MNKWGVGLTLLLASASVLAKDFQLLNVSYDPTRELYEQYNKAFSAHWKQETGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKNWLKRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHQNHGDQAKAQDFVKALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLATNELGKDKFEIVTPSESILAEPTVSVVDKVVDKKGTRQVAEAYLKYLYSPEGQEIAAKNFYRPRDPNVAKKYANEFPKLKLFTIDQEFGGWTKAQKEHFSNGGTFDQISQR
>CP023478.1|AVR35479.1|98247_98493_+|Cell-division-protein-ZapB
MTMSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRMEEV
>CP023478.1|AVR35478.1|96953_97805_-|Glycerol-uptake-facilitator-protein
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISIIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDGRKVVPFIISQFAGAFCAAALVYGLYYNLFLDYETTHHMVRGSVESLDLAGIFSTYPNPHINFVQAFAVEMVITAILMGVILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDIGPKAFAWLAGWGDVAFTGGKDIPYFLVPLCAPVVGAALGAFSYRKLIGRHLPCDTCVDEEQESPSSSSTQHKASL
>CP023478.1|AVR35477.1|95420_96932_-|Glycerol-kinase
MTDKKYIVALDQGTTSSRAVVMDHDANIVSVSQREFEQIYPKPGWVEHDPMEIWASQSSTLVEALAKADINSDQIAAIGITNQRETVVVWERETGKPIYNAIVWQCRRTAEICEQLKRDGMEEYIRKATGLVVDPYFSGTKVKWILDHVEGSRERAKRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHDLDWDDKMLDALDIPRAMLPEVRKSSEVYGQTNIGGKGGTRIPIAGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVTSTHGLLTTIACGPRGEVNYALEGAVFMAGASIQWLRDEMKLISDAFDSEYFATKVKDTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNSNHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYSGWKKAVKRALAWEEHDEA
>CP023478.1|AVR35476.1|94103_95306_+|sodium/glutamate-symporter
MFHLDTLSTLVAATLVLLLGRKLVQTVPLLKKYTIPEPVAGGLLVALALLVLKKSMDIDIDFDMSLKDPLMLAFFATIGLNANLASLRAGGKVLGTFLIVVVGLLLLQNALGIGMAKLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFVERYGFANATEVAMACATFGLVLGGLIGGPVARYLVKHSSSPDGTPDDQVAPTAFEKPDVGRVITSLVLIESIALIAICLTVGKVVAQLLAGSVFELPTFVCVLFIGVILSNSLALAGLYRVFDRAVSVLGNVSLSLFLAMALMSLKLWELASLALPMIIILAVQAVAMALYAVFVTYRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLLLPIFG
>CP023478.1|AVR35475.1|92427_93819_-|putative-purine-permease
MSVNTAESENAQPVAHKPASELIYRLEDRPPLPQTLFAAFQHLLAMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKTGGADVATMMAALFGTLMLASCTEMVLSRVLHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMADHTFGAPKNLLLAGIVLALIIILNRQRNPYLRIASLVIAMAAGYLAAWFLDMLPANTAPTNSSLITVPTPLYYGLGIDWSLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPDWLKNLLSSGIAAGGITAIVLNLIFPPEKA
>CP023478.1|AVR35474.1|90561_92277_-|Protein-AsmA
MKFLGKLILWLLVALLLVIVGAWFLLQTHWGARQASAWLSNGTRWQVSFDAMDHDFSSPLHVQLQNVTFGREGKPATLVAKTVDIGFSTRQFSDPLHADEIVLNDGTLNLSPHSADLPFAADRLMLRNMAFNSPETGWALSAQRVTGGVSPWAPEAGNVLGKTAQIQMSAGSMTLNGVEASNVLIQGKIDQGEVTLSTLGADVARGTLTGNAKRSADGSWLVDNLQLNEIRLQSAASLADFFAPLTTVPSLQIGRLDITDARLQGPDWAVTDLDLSLRNLTLSHGGWQSQDGTLSMNASEFIYGSLHFFDPILNAEFSPQGIALRQFSSRWEGGMVRTSGNWLRAGNALVLDDTAFAGLEYTLPANWKPLWMAPLPAWLQSLTLKKFSASRNLIIDVDPAFPWQITALDGYGGELQLVKNGSWGVWNGSATLNAAAATFNRIDVRRPSLKLSATASTVNITELSAFTERGILQATAAVSQLPQRQVNLSLNGRGVPLNILQAWGWPSLPISGDGNLQLTASGSVQADAPLKPTVNAQLSAVNMEKQQVAQTMRNGEVNTAPAAPAPTPVTP
>CP023478.1|AVR35473.1|88751_90311_-|PTS-system-maltose-specific-EIICB-component
MPEIRQRILENMQKFSRAMIGAVLFLPVIGLILALSSVLTNPTLIAETSFLHQLGQMLGDTFWPLFGNLGLLFCVGISYGLAKDKKTEVALVAVMCFIMFLGANHSWLEHTHGLAEKINGEYYGTGQTQLLGFVVVDMGVFLGIILGCTIAWVHNKVSTIELPGALSMYGGAKLTLVAMTPVVIFYAIAFTWIWPFMTHGISALTGFMKNAGVAGVFVYGFFEKFLIPTGLHHFVWSPFQLTQIGGTLNVDGQVVSGTQAIFLAYMRHPDLTPVMNEALRFSQQGMTTIFGLAGASLAFYHTAKPEKKVMAKAILLPAIITSMLTGITEPIEFTFLFVSPLLWVIHATLTAASQAICDLFTVRPWGASGLIEFLIYNLPLPVSLTRWPGYVLIGIGQFAVYYVIFRTLVVKLNLKTPGREDDENVKLYSKAEYRQKVAQPQSVTDDIIRGLGGKENILSVDNCFTRLRVAVRDMARVDDAQLKNTGANGVVRNRNEVQVIYGVKVGQVRSRVDNWLAEN
>CP023478.1|AVR35472.1|87359_88739_-|Phospho-alpha-glucosidase-pagL
MKLTVLGGGGVRSAFLAKSLAYNAHRIGLTEVVFLDSSADNLAIFGEIARYVFTTIRPDIHFTTTTDPVAALQNANYIITTLRVGGDESRIRDERIALQHNTLGQETTGAGGFAMAMRSIPAILDYCRLIEAHAAEDAILFNFTNPSGLVTEAIVKSGFKRRVYGICDAPSELIRELPAILDCEERDLSVECYGLNHFSWFTHFTVRGEAVTERLIASPALYQKTAMQYFSPELVRLCDNQLLNEYLYYYYYRDEALKAIQGAGETRGEQIARINQEMRQALRTVDARTQPEAAFNIWMQHYLRRENSYMQNESRQEKFHTREPLTLRQFIEEPDTGGYAGVALDILEAVNSTTTKRIVVSIQNNGTLDFLRPDDVIEISCDLSREGLKPVTPVKVPTAQKNMISCVKEYERLAVAAILQQDKSLAVRALMAHPLIGSYSLAKTLVEAYLDDEQFAAWR
>CP023478.1|AVR35471.1|86162_86885_+|putative-sugar-isomerase
MDVENIFRDVKLSKTEMTVLRFIQNDPEQCIRQGVRAVAEQCYSNPSSLVRLAKKLKFSGWLELVYFIKFNITMPKLDVTNDIDYMSIQPAEALTPLLASLAQQRVLIHGSGFSQLIAQYIYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIISKSGRSSSALNWVKALEGKEINLVCFTGDYQSPLAQAADTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTRVRNNS
>CP023478.1|AVR35481.1|99883_100648_+|CDP-diacylglycerol-pyrophosphatase
MRRVRYFLLALLVAILAALAGGYYWLHSGNPDALRKIVLQQCVPHQQQQQNPSPCAEVNLKGGYVLFKDRNGPLQYLLMPTYRINGTESPLLLDPLTPNFFWQAWQGREIMSQRHGAPVPDNAVSLAINSRSGRTQNHFHIHISCLRPDVRAQLDKDAAAISSRWLPLPGGLQGHEYLARRVTEAELAQRSPFLMLAEEVPEARQHMGRYALAMAQQSDGSLVLLATERNLLSLNRASAEEIQDHRCAILNANH
>CP023478.1|AVR35482.1|100712_102017_+|putative-sodium/sulfate-symporter
MSLWLTHPLFLPSLIVGVTIVLWATSLLPEFITALLFFAAAMMAKIAPPEVIFGGFASSAFWLVFSGFVLGIAIRKTGLADRAAQALSARLTDSWPRMVASVVLLSYALAFVMPSNMGRIALLMPIVAAMARRAGIADGSRGWFGLALAVGFGTFQLSATILPANVPNLVMSGAAEGSYGIHLNYVPYLLLHTPVLGWLKGAALVALICWLFPGKPHPPRDLAPLPAMSRDEKRLAWLLAVVLTLWVTESWHGIGPAWTGLAAAVVTLLPRVGFISGEEFASGVNMRTCIYVAGILGLAITVTQTGIGGVVGNALLQVMPLDKDNPFTSFLALTGITSALNFIMTANGVPALYTTFAQSFADATGFPLLSVIMIQVLGYSTPLLPYQASPIVVAMGLGKVPARAGMLLCLALAAVSYLILLPLDYAWYQLLGKL
>CP023478.1|AVR35483.1|102108_102876_-|Triosephosphate-isomerase
MRHPLVMGNWKLNGSRHMVNELVANLRTELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAKKA
>CP023478.1|AVR35484.1|102985_103585_-|hypothetical-protein
MKKWTILCFSGLMGLAVGPHALSAESESTTAAPYLLAGAPSFDLSISQFREKFNVDNPKLPLNEFRSISTSRDRANLTRAASKINENLYASTALERGTLKIKSMQITWLPIQGPEQKAAKAKALEYMSAMIRAFVPTLSPAQSQQKLQKLLTAGKGKRYFSDTEGAVRYVVADHGEKGLTFAVEPIKLALSETLEGNNK
>CP023478.1|AVR35485.1|103697_104126_+|putative-protein-YiiR
MTLQQWLFSIKGRIGRRDFWIWIAIWLVTMSALFTLAGSNLLNLQTAAFIIVCLLWPTAAVVVKRLHDRGKSGLWALLMILAWMLLAGNWAMLPQVWQWGVGRFVPTLIIVMMLIDLGAFVGTQGENKFGKETQDVRWKADA
>CP023478.1|AVR35486.1|104126_104873_-|Ferredoxin--NADP-reductase
MADWVSGKVTKVEYWTDALFSLYVQAPVHPFTAGQFTKLGLEIDGERVQRAYSYVNAPGNPDLEFYLVTVPEGKLSPRLAALKPGDEVQVVSEAAGFFVLEEVPDCDTLWMLATGTALGPYLSILQEGKDLERFNHLVLVHAVRYAADLSYLPLMRELEQRYAGKLRIQTVVSRETVAGSLTGRVPFLIETGALEEAVGLPMTRDTSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAEHYW
>CP023478.1|AVR35487.1|105023_106034_-|Fructose-1,6-bisphosphatase-class-2
MKRELAIEFSRVTEAAALAGYKWLGRGDKNSADGAAVNAMRIMLNLVNIDGTIVIGEGEIDEAPMLYIGEKVGTGQGDAVDIAVDPIEGTRMTAMGQANALAVMAVGDKGCFLNAPDMYMEKLIVGPGAKGAIDLNLPLEENLRNIARALNKPLGELTVTVLAKPRHDAAIAQLQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMQGRLLARHHVKGDSEENRRIGENELARCKTMGIEAGKVLRLDEMARSDNVVFSATGITKGDLLDGITRKGNMATTETLLIRGKSRTIRRIQSIHYLDRKDPDVQQHIL
>CP023478.1|AVR35488.1|106082_108164_-|ATP-dependent-DNA-helicase-RecG
MSGRLLDAVPLSSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHLYPIADLLPGVYATVEGEVLNSNITFGGRRMMTCQISDGTGILTMRFFNFNAAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAISELLPPELAQGMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSMLALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGIEVGWLAGKQKGKARQAQQDAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRNACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPDVQRIARHIHERYPLQAQALIERWMPETERYSNA
>CP023478.1|AVR35489.1|108169_108859_-|tRNA-guanosine-2'-O-methyltransferase
MNSQRYARICEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEVHAVWPSSRMRTMASAAAGSNSWVQVKTHRTIADAVGHLKGQGMQILATHLSGKAIDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPEEQQRLLFEGGYPVLARVARQKGLPYPHVNEQGEVEADAAWWATMQAAR
>CP023478.1|AVR35490.1|109020_111141_-|Guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MYLFESLNQLIQNYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVHDADVCYRVLGQMHSLYKPRPGRFKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGGESSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLAEIPPENIQRELDRMKLASLDDLLAEIGLGNAMSVVVAKNLQQGEAAAAPVPANASNHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFITEIKVDMFNHQGALANLTAAINTASSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN

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Crispr_ID: CP023478_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023478_2

821245-821341

Orphan

Consensus_repeat	Method
CTACCAGGAGGCCGGCCACAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023478_2

>merge|CP023478|2|821245-821341|CRISPRCasFinder
CTACCAGGAGGCCGGCCACAGCCTCAGTACCCGTAGCCCGGCTAAGCGCAGCGCGAGCCGGGTAACCCGGCGGCCTACCAGGAGGCCAGCCACAGCC

>CP023478|2|2|821245-821341|CRISPRCasFinder
CTACCAGGAGGCCGGCCACAGCC	TCAGTACCCGTAGCCCGGCTAAGCGCAGCGCGAGCCGGGTAACCCGGCGGC
CTACCAGGAGGCCAGCCACAGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP023478.1\|AVR36149.1\|810565_810895_-\|Cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
CP023478.1\|AVR36159.1\|821811_822423_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239321
CP023478.1\|AVR36165.1\|827772_828432_+\|putative-inner-membrane-protein	unknown	unknown	gnl\|CDD\|185044
CP023478.1\|AVR36162.1\|824967_826401_-\|6-phospho-beta-glucosidase-BglA	unknown	unknown	gnl\|CDD\|184975
CP023478.1\|AVR36163.1\|826519_827248_-\|putative-regulator	unknown	unknown	gnl\|CDD\|224651
CP023478.1\|AVR36161.1\|824483_824843_-\|hypothetical-protein	unknown	unknown	unknown
CP023478.1\|AVR36152.1\|812976_814155_+\|2-octaprenyl-6-methoxyphenol-hydroxylase	unknown	unknown	gnl\|CDD\|235584
CP023478.1\|AVR36155.1\|816909_817299_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP023478.1\|AVR36167.1\|829811_830078_+\|putative-antitoxin-CptB	unknown	unknown	gnl\|CDD\|182803
CP023478.1\|AVR36164.1\|827298_827610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179908
CP023478.1\|AVR36160.1\|822424_824434_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226685
CP023478.1\|AVR36154.1\|815790_816885_+\|glycine-cleavage-system-aminomethyltransferase-T	unknown	unknown	gnl\|CDD\|234742
CP023478.1\|AVR36153.1\|814165_815368_+\|Protein-VisC	unknown	unknown	gnl\|CDD\|236139
CP023478.1\|AVR36156.1\|817444_820318_+\|Glycine-dehydrogenase-[decarboxylating]	unknown	unknown	gnl\|CDD\|235432
CP023478.1\|AVR36168.1\|830058_830469_+\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|369290
CP023478.1\|AVR36166.1\|828582_829566_-\|putative-global-regulator	unknown	unknown	gnl\|CDD\|236567
CP023478.1\|AVR36150.1\|811055_811640_+\|exported-protein	unknown	unknown	gnl\|CDD\|234976
CP023478.1\|AVR36151.1\|811663_812980_+\|proline-aminopeptidase-P-II	unknown	unknown	gnl\|CDD\|182804
CP023478.1\|AVR36157.1\|820380_821124_+\|oxidoreductase-YgfF	unknown	unknown	gnl\|CDD\|182051
CP023478.1\|AVR36148.1\|809645_810242_-\|putative-ligase	unknown	unknown	gnl\|CDD\|182385

Protein	Function_ID	Function_description	E-value
CP023478.1\|AVR36149.1\|810565_810895_-\|Cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	3.38717e-64
CP023478.1\|AVR36159.1\|821811_822423_-\|hypothetical-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	6.45902e-53
CP023478.1\|AVR36165.1\|827772_828432_+\|putative-inner-membrane-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.96406e-137
CP023478.1\|AVR36162.1\|824967_826401_-\|6-phospho-beta-glucosidase-BglA	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
CP023478.1\|AVR36163.1\|826519_827248_-\|putative-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.22667e-56
CP023478.1\|AVR36152.1\|812976_814155_+\|2-octaprenyl-6-methoxyphenol-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
CP023478.1\|AVR36155.1\|816909_817299_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	5.15002e-73
CP023478.1\|AVR36167.1\|829811_830078_+\|putative-antitoxin-CptB	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	4.58851e-49
CP023478.1\|AVR36164.1\|827298_827610_+\|hypothetical-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	3.53318e-63
CP023478.1\|AVR36160.1\|822424_824434_-\|hypothetical-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	5.56843e-104
CP023478.1\|AVR36154.1\|815790_816885_+\|glycine-cleavage-system-aminomethyltransferase-T	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
CP023478.1\|AVR36153.1\|814165_815368_+\|Protein-VisC	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
CP023478.1\|AVR36156.1\|817444_820318_+\|Glycine-dehydrogenase-[decarboxylating]	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
CP023478.1\|AVR36168.1\|830058_830469_+\|inner-membrane-protein	gnl\|CDD\|369290	pfam07254, Cpta_toxin, Membrane-bound toxin component of toxin-antitoxin system. CptA is a family of bacterial proteins named for the member of this family, YGFX_ECOLI. YgfX was previously thought to be the toxic part of a toxin-antitoxin module along with the antitoxin, pfam03937 Sdh5. However, studies have shown that, YgfX interferes with correct cell division and morphology. Furthermore, the function of YgfX-SdhE as a TA system could not be demonstrated in either E. coli or Serratia sp. ATCC 39006. YgfX is predicted to have a short N-terminal cytoplasmic domain followed by two transmembrane helices (TMHs) separated by a short periplasmic loop and finally, a larger C-terminal cytoplasmic domain. The TMHs of YgfX are required for activity, but the sequence of the cytoplasmic 13 N-terminal amino acids is not essential. Furthermore, the amino acids W34 and D117 are not required for localization but are necessary for YgfX multimerization, interaction with SdhE, and YgfX activity. It is proposed that the formation of YgfX multimeric membrane-bound proteins are required to enable the interaction with the cytoplasmic SDH assembly factor SdhE. Another study has demonstrated that sdhEygfX (bicistronic operon) affects pig biosynthesis, directly or indirectly, at the level of transcription of the biosynthetic operon (pigA-O). It has also been suggested that, in addition to indirect transcriptional activation of pigA-O, YgfX might facilitate the formation of a terminal pig biosynthetic complex consisting of PigB and PigC.	4.46031e-58
CP023478.1\|AVR36166.1\|828582_829566_-\|putative-global-regulator	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
CP023478.1\|AVR36150.1\|811055_811640_+\|exported-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	2.5445e-121
CP023478.1\|AVR36151.1\|811663_812980_+\|proline-aminopeptidase-P-II	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
CP023478.1\|AVR36157.1\|820380_821124_+\|oxidoreductase-YgfF	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	8.89118e-169
CP023478.1\|AVR36148.1\|809645_810242_-\|putative-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	1.03925e-123

>CP023478.1|AVR36157.1|820380_821124_+|oxidoreductase-YgfF
MGIALISGASRGIGRATALLLAQEGYTVAVNYHHNINAATEVVNTIVASGGKATALRADISDEAQVMAMFEAIDRMGEPLTALVNNAGILFTQCTVESLSAERINRVLATNVTGYFLCCREAVKRMAHRHGGKGGAIVNVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAQGIRVNGVRPGLIYTEMHASGGEPGRVDRVKGSLPMQRGGQPEEVAQAIAWLLSDKASYVTGSFLELAGGK
>CP023478.1|AVR36156.1|817444_820318_+|Glycine-dehydrogenase-[decarboxylating]
MTQTLSQLENRDAFIERHIGPDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIAGRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTPYQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFDVIVDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKLRHAHYFDTLCVEVADKAAVLARAEALQINLRSDIHGAVGITLDEATTREDVLNLFRAIVGDDHGLDIDTLDKDVALDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHALERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPVEQAEGYHQMIAQLSDWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDFGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVGEWNHPYSRELAVFPAGLHNKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>CP023478.1|AVR36155.1|816909_817299_+|Glycine-cleavage-system-H-protein
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYTDGWIFKIKASDEAQVAALLDAAAYEALLEDE
>CP023478.1|AVR36154.1|815790_816885_+|glycine-cleavage-system-aminomethyltransferase-T
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRTREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPYGLEIIVRDDLSLIAVQGPQAKAKAATLFTDAQRQAVEGMKPFFGVQAGELFIATTGYTGEAGYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRNFIGREALEMQREKGTEQLVGLVMTEKGVLRGGLPVRFTDSDGNQKEGIITSGTFSPTLGYSIALARVPAGIGDTAVVQIRNREMPVKVTKPGFVRNGKAIV
>CP023478.1|AVR36153.1|814165_815368_+|Protein-VisC
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEKAEPQPLAADAPPALRVSAINAASEKLLTRIGVWSEIVAQRASCYHGMEVWDKDSFGRISFDDQSMGFSHLGHIIENAVVHYALWQKAQRCTDVTLLAPAQLQQVAWGENEAFLSLQDGSMLTARLVIGADGANSWLRNKADIPLTFWDYHHHALVATIRTAEPHQAVARQAFHGNGILAFLPLCDPHLCSIVWSLSPAEAQRMQEADEATFNQALNIAFDNGLGLCQLESAREVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDMFSGSHPAKKFLRDMGLKLADTLPGVKPQLIRQAMGLNDLPAWLR
>CP023478.1|AVR36152.1|812976_814155_+|2-octaprenyl-6-methoxyphenol-hydroxylase
MSVLIVGGGMTGATLALAISRLTGGALPVHLIEAQDPQSARHPGFDDRAIALAAGTCQQLARIGVWQRLAERATPIQRVHVSDRGHAGFVNLAAADYSLSALGQVVELHDVGQRLFSLLREAPGVTLHCPAKVEAVSRSQESVSLTLEGGETISGKLLVAADGSRSSLGARCGISWQQQPYEQLAIIANVSTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVWCHPQSRRDEVLSWSDERFCQQLQQAFGWRLGRITHAGKRSVYPLALTTASRAVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAELLADAHLSGEDVGHYPLLCRYQARRAGDKAATIGVTDGLVHLFANRWAPLVAGRNVGLMAMELFTPARDALAQRTLGWVPR
>CP023478.1|AVR36151.1|811663_812980_+|proline-aminopeptidase-P-II
MTQQEFLSRRQALLAQMQPGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIKSDETHNHSVLFNRVRDLTAEIWFGRRLGQEAAPAKLGVDRALAFSEINQQLYQLLNGLDAIYFAQGEYAYADQIVFNALEKLRKGSRQNLQAPNSVIDWRPIVHEMRLFKSAEELAVMRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFNRHGARFPSYNTIVGGGENGCILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFSQPQREIYDIVLESLETALELYRPGTSICQVNQEVVRIMITGLVRLGILKGEVDELIANNAHRPYFMHGLSHWLGLDVHDVGNYDTDRSRVLEPGMVLTVEPGLYIAADADVPAQYRGIGIRIEDDIVITEDGNENLTAGVVKKADEIEALMAAARQS
>CP023478.1|AVR36150.1|811055_811640_+|exported-protein
MRMSIQNEMPGYNDVDQLLNQQGVGLTPAEMHGLISGLLCGGNTDSSWQPLVHDLTNEGLAFGHELAQALRNMHSAISDSLDDDGFLFQLYLPEGDAVSVFDRADALAGWVNHFLLGLGVSQPKLDKVKDETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFARQQPTAPEVRKPTLH
>CP023478.1|AVR36149.1|810565_810895_-|Cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLEQGRISERPGSKFE
>CP023478.1|AVR36148.1|809645_810242_-|putative-ligase
MTLQPDTLLSRQHIRQQIRERRRALSPEQQRQFALQAAERMMAWPPVVLAHTVALFLSFDGELDTQPLIDQLWRAGKRVYLPVLHPFSPGNLLFLHYHPQSELIVNRLKIREPKLDVRDVLPLADLDVLVTPLVAFDAGGQRLGMGGGFYDRTLQNWQQYRLQPVGYAHDCQQVDTLPSEEWDIPLPAVITPGKTWCW
>CP023478.1|AVR36159.1|821811_822423_-|hypothetical-protein
MRAITALLLLCISAFSFAAPAEEPQANANDQLAQLLFNDPNSPRTGAKAPKLTIVSFTDYNCPYCKQFDPLLEKIVHDNPDIQLIVKLLPFKGQSSVNAAKAALSTWRQQPDKFWALHQRLMAKKGYHDDASIAAAQKKTATDSVNIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPADELEGLVKEQLAKARGQ
>CP023478.1|AVR36160.1|822424_824434_-|hypothetical-protein
MSMLFRRLLVCLLWLWLPVSQAADSGWLRAADNQHASVRLRAQTESNGDTRLLLDVALEKGWKTYWRSPGEGGIAPAIAWHTPLEVDWRWPTPQRFDVAGISTQGYHGDVSFPMTLRGKIPPTLSGVLTLSTCSNVCILTDYPFSLDMTAPPGEGFGYDFTRAMGTLPLGDGLTSQLTASYVSGKLTVTARRDAGWQQPALFIDSMEDVDFGKPSFTSRGDTLTATIPVTDSWGEAAPDLRGKTLSLVLADSGQAQESQIAISAGSAAPELTLGWVLLMALAGGLILNVMPCVLPVLAMKLGSLVQTEHRERGAVRRQFLASACGIVVSFLALALMMTALRLGNQALGWGIQFQSPWFIGAMALVMILFSASLLGLFEIRLSSSASTFLATRGGNGLMGHFWQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFFAMGIGMSLPWLLIVAWPGLAQRLPRPGRWMNHLRVLLGLMMLGSALWLVSLLTIHIGRTPVLTLLVILAIALLLATAWRYRWRTALRAGALAIVVAGAVALVSRSDGEGPRRDRVNWQPLSEQAIASALAEHKRVFIDVTADWCVTCKANKYNVLLRDDVQQALLAPDVVALRGDWSRPSATISQFLTTRGSAAVPFNQIYGPGSPQGEILPALLDREHLLATLSVAQGK
>CP023478.1|AVR36161.1|824483_824843_-|hypothetical-protein
MIKRQRKAILFVLLACLVVLVCTAQRMAGMHALVMNLTADSPSLQQTQDKADAPVTPCELSAKSLMAVPPMLFEGALLAITLLLAVLAAIPPRIERQWPPRVISPPRLRVHLRLCVFRE
>CP023478.1|AVR36162.1|824967_826401_-|6-phospho-beta-glucosidase-BglA
MKKLTLPKDFLWGGAVAAHQVEGGWDQGGKGPSICDVLTGGAHGVPREITHQVEAGKYYPNHQAVDFYGRYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGGWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFVASALAVKAARRINPDMQVGCMLAMVALYPYSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDAQILREGTCAYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYSLCELYERYQKPLFIVENGFGAYDKVEADGSINDDYRIDYLRAHIEEMIKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGENL
>CP023478.1|AVR36163.1|826519_827248_-|putative-regulator
MFSHAAVASLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLEQNEPQQANIGASEIMSFFKSVNNDEFDGLLDQAVDIILASERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFSLHHCKVMSITSHEHSRLAKLADFNLSWHVPQTRIGGVYDITTQIPVIYILESLGRKLARKIS
>CP023478.1|AVR36164.1|827298_827610_+|hypothetical-protein
MQANDITFFQRFQNDILAGRKTITIRDAAESHFQVGDVLRVGRYEDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLGQLRQVISDIYPGESQFYVIEFKTL
>CP023478.1|AVR36165.1|827772_828432_+|putative-inner-membrane-protein
MVRKPLITQGYSLAEEVANSISHGIGLVFGIVGLVLLLVQAADTNASATAITSYSLYGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYIGQS
>CP023478.1|AVR36166.1|828582_829566_-|putative-global-regulator
MAFTPFPPRQPSSSARLPLTLMTLDDWALATISGPDSEKYLQGQITADVSSLTDAQHLLAAHCDAKGKMWSNLRVFRRDGGFAWIERRSLRDAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAATPVVSEGATSLLWFEHPGERFLLVTDVDTANRVTDALRGEAQLNNSQQWLALNIEAGLPVIDSANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWTLSGTASRVPEAGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPLPYSLEED
>CP023478.1|AVR36167.1|829811_830078_+|putative-antitoxin-CptB
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRNRERGPVAI
>CP023478.1|AVR36168.1|830058_830469_+|inner-membrane-protein
MVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNADWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

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Click the colored protein region to show detailed information

Crispr_ID: CP023478_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023478_3

4340796-4340905

Orphan

Consensus_repeat	Method
AAAAAGGCAACGCAAGTTGCCTTTTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023478_3

>merge|CP023478|3|4340796-4340905|CRISPRCasFinder
AAAAAGGCAACGCAAGTTGCCTTTTTTAATGTTTGCTCCCTCTCCCACCGGGAGAGGGCCGGGGTGAGGGCAAGGTAAAAGTAAAAAGGCAACGCAAGTTGCCTTTTTTA

>CP023478|3|3|4340796-4340905|CRISPRCasFinder
AAAAAGGCAACGCAAGTTGCCTTTTTTA	ATGTTTGCTCCCTCTCCCACCGGGAGAGGGCCGGGGTGAGGGCAAGGTAAAAGT
AAAAAGGCAACGCAAGTTGCCTTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
CP023478.1\|AVR39383.1\|4347263_4348487_-\|Phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
CP023478.1\|AVR39368.1\|4331600_4333025_-\|Sensor-protein-creC	unknown	unknown	gnl\|CDD\|236846
CP023478.1\|AVR39372.1\|4335275_4335923_-\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|179583
CP023478.1\|AVR39369.1\|4333024_4333714_-\|Transcriptional-regulatory-protein-creB	unknown	unknown	gnl\|CDD\|236838
CP023478.1\|AVR39374.1\|4336538_4336868_-\|Trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
CP023478.1\|AVR39378.1\|4342219_4343602_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
CP023478.1\|AVR39379.1\|4343611_4344583_-\|Phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
CP023478.1\|AVR39370.1\|4333726_4334200_-\|Protein-CreA	unknown	unknown	gnl\|CDD\|236752
CP023478.1\|AVR39382.1\|4346440_4347160_-\|Purine-nucleoside-phosphorylase-DeoD-type	unknown	unknown	gnl\|CDD\|180275
CP023478.1\|AVR39376.1\|4339122_4340790_+\|putative-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236992
CP023478.1\|AVR39367.1\|4330182_4331541_-\|inner-membrane-protein-CreD	unknown	unknown	gnl\|CDD\|226859
CP023478.1\|AVR39371.1\|4334409_4335279_+\|Right-origin-binding-protein	unknown	unknown	gnl\|CDD\|185076
CP023478.1\|AVR39384.1\|4348539_4349874_-\|Thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
CP023478.1\|AVR39375.1\|4336956_4338918_-\|Soluble-lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
CP023478.1\|AVR39373.1\|4336036_4336552_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235336
CP023478.1\|AVR39386.1\|4351166_4352444_-\|putative-transporter-protein	unknown	unknown	gnl\|CDD\|224883
CP023478.1\|AVR39385.1\|4349971_4350751_-\|Deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
CP023478.1\|AVR39381.1\|4345334_4346351_+\|Lipoate-protein-ligase-A	unknown	unknown	gnl\|CDD\|179655
CP023478.1\|AVR39377.1\|4340965_4342198_-\|Trifunctional-NAD-biosynthesis/regulator-protein-NadR	unknown	unknown	gnl\|CDD\|236151
CP023478.1\|AVR39380.1\|4344687_4345335_+\|protein-Smp	unknown	unknown	gnl\|CDD\|236885

Protein	Function_ID	Function_description	E-value
CP023478.1\|AVR39383.1\|4347263_4348487_-\|Phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
CP023478.1\|AVR39368.1\|4331600_4333025_-\|Sensor-protein-creC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
CP023478.1\|AVR39372.1\|4335275_4335923_-\|phosphoglycerate-mutase	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	1.30204e-160
CP023478.1\|AVR39369.1\|4333024_4333714_-\|Transcriptional-regulatory-protein-creB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	6.65245e-154
CP023478.1\|AVR39374.1\|4336538_4336868_-\|Trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	1.22303e-51
CP023478.1\|AVR39378.1\|4342219_4343602_-\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
CP023478.1\|AVR39379.1\|4343611_4344583_-\|Phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
CP023478.1\|AVR39370.1\|4333726_4334200_-\|Protein-CreA	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	1.49676e-119
CP023478.1\|AVR39382.1\|4346440_4347160_-\|Purine-nucleoside-phosphorylase-DeoD-type	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	5.29166e-174
CP023478.1\|AVR39376.1\|4339122_4340790_+\|putative-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
CP023478.1\|AVR39367.1\|4330182_4331541_-\|inner-membrane-protein-CreD	gnl\|CDD\|226859	COG4452, CreD, Inner membrane protein involved in colicin E2 resistance [Defense mechanisms].	0
CP023478.1\|AVR39371.1\|4334409_4335279_+\|Right-origin-binding-protein	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	0
CP023478.1\|AVR39384.1\|4348539_4349874_-\|Thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
CP023478.1\|AVR39375.1\|4336956_4338918_-\|Soluble-lytic-murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
CP023478.1\|AVR39373.1\|4336036_4336552_+\|hypothetical-protein	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	3.63923e-110
CP023478.1\|AVR39386.1\|4351166_4352444_-\|putative-transporter-protein	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	0
CP023478.1\|AVR39385.1\|4349971_4350751_-\|Deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
CP023478.1\|AVR39381.1\|4345334_4346351_+\|Lipoate-protein-ligase-A	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
CP023478.1\|AVR39377.1\|4340965_4342198_-\|Trifunctional-NAD-biosynthesis/regulator-protein-NadR	gnl\|CDD\|236151	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR.	0
CP023478.1\|AVR39380.1\|4344687_4345335_+\|protein-Smp	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	4.76784e-148

>CP023478.1|AVR39376.1|4339122_4340790_+|putative-ABC-transporter-ATP-binding-protein
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPGIKIGYLPQEPQLNPEHTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEYQKRNETNELFIPPGPRLGDKVLEVSHLRKSYGDRVLIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRISK
>CP023478.1|AVR39375.1|4336956_4338918_-|Soluble-lytic-murein-transglycosylase
MHLKEEELVEKAKKMAWHLLAASVGLLALSQLAHADSLDEQRSRYAQIKQAWDNRQMDVVDQLMPTLSTYPLYPYLQYRQITDDLMNQPALVVKNFIDANPTLPPARSLRSRFVNELARRSDWRGLLAFSPDKPTSTEAQCNYYYAKLSVGQSQEAWSGAKALWLTGKNQPGACEPLFSAWRDSGQQDPLAYLERIRLAMKAGNIGLVKSLAQQMPANYQSIASAVVALANDPNSVLTFARTTGATDFTRQMAAVAFASVARQDVENARLMIPSLVQAQQLNEDQTQELRDIVAWRLMGNDVTEEQAIWRDDAIMRSQSTPLVERRVRMALGTGDRHGLNTWLARLPMEAKEKDEWRYWQADLLLERGRDEEAQAILRSLMQQRGFYPMVAAQRLGEEYTFRIDKAIGTLDPALASGPEMARVRELMYWNMDNTARTEWANLVTSRSKSQQAQLARYAFDQHWWDLSVQATIAGKLWDQLEERFPLAYNDLFARYISGKDIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVSMFSIPGYSGPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVRTWQGNSAGRIDAVAFVESIPFSETRGYVKNVLSYDAYYRYFMGQQDKLFSDAEWRQRY
>CP023478.1|AVR39374.1|4336538_4336868_-|Trp-operon-repressor
MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAQDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKSAPVELRQWLEQTLLASDK
>CP023478.1|AVR39373.1|4336036_4336552_+|hypothetical-protein
MHHVVSATTNPSKIQAILQAFDEIFGEGSCHIESVSVESGVPEQPFGSEETRAGARNRVANARLAQPHADFWVAIEAGIDDGSTFSWVVIESASQRGEARSATLPLPDVILEQVRAGEALGPVMSQYTGIDQIGRKEGAIGVFTGGKLTRSSVYHQAVVLALSPFHNAIYR
>CP023478.1|AVR39372.1|4335275_4335923_-|phosphoglycerate-mutase
MLQVYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGERARTLGITHIITSDLGRTRRTAEIIAEACGCSVIADARLRELDMGVLEKRHIDSLSEEEEGWRRQLVNGTPDGRIPQGESMQELSERMHAALAACLELPAGSRPLLVSHGIALGCLVSTILGLPAYAERRLRLRNCSISRVDYQQSPWLASGWVVETAGDVSHLDAPAMDELQR
>CP023478.1|AVR39371.1|4334409_4335279_+|Right-origin-binding-protein
MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRLGEFTLPKHEFVALPTTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYGLHEPRPSLEKDDEQEVFYTTALTPEMANGHLQNAHPVTLEGGEYVMFTYEGLGTGLQEFILTVYGTCMPMLNLTRRKGLDIERFYPEDESRDQATPIQLRCEYLIPIRR
>CP023478.1|AVR39370.1|4333726_4334200_-|Protein-CreA
MKYKKFAMGLLLLAGCQIAQAEQIGSVDTVFKWLGPDHKIVVEAFDDPDVQNVTCYISRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELTDKIKNGKSQGDVVFQKRTSLVFKKLQVVRFYDAKRNALVYLTYSDKVVDGSPKNAISAVPIMPWNK
>CP023478.1|AVR39369.1|4333024_4333714_-|Transcriptional-regulatory-protein-creB
MQQPRIWLVEDEQSIADTLVYMLQQEGFQVTVFDRGLPALEAAAHQAPDVAILDVGLPDISGFELCRRLLARFPALPMLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRSVLRRLQKFAAPSSVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMEQVWSDAWESLDRTVDTHIKTLRAKLRAVNPDLSPINTHRGMGYSLGRS
>CP023478.1|AVR39368.1|4331600_4333025_-|Sensor-protein-creC
MRIGMRLLLGYFLIVAIAAWFVLSIFVQEVKPGVRRATEGTLNDTATLLAALAREDLLAANPQQGRLAQAFQQLNQQRLNANIGGIKKVRNEYRVYLTDARGKVVFDSSGEATGQDYSRWNDVWLTLRGQYGARSSRSDPHDEASSVMYIAAPVMDKGRIIGVLSVGKPNLAMTPVIKRSERRILWAGGALLGIALLIGCGVVWWINFSIGKLVRYADSVTADRPLPLPEVGSSELRKLAQALESMRVKLEGKNAIENYVYDLTHELKSPLAAIRGAAEILREGPPPAVAARFTENILAQNTRMQLLVERLLQQARLESRLEIKLQPVSIDALYQRLAEERDIALAAKAITLRWQASGMLVNGDGELLAQALGNLLDNAIDFTPQGGEIALGVEKRNAEVQLSVTDNGCGIPDYALTRIFDRFYSLPREDGHKSSGLGLAFVREVARLHHGDIRLRNRPEGGVVATLRLHRPFT
>CP023478.1|AVR39367.1|4330182_4331541_-|inner-membrane-protein-CreD
MLKSPLFWKITTLIGCIVLLSLPLMMVRELINERADYRSEVVDAIEQSTSGSQKLAGPLIAIPVTETLTRRENQKEVAYQRSWVYYWLPESLAVTGKQTVESRRVGIYSGQVWHNALQIKATFDPLRLASLRKTHITLGLPRLVVSVGDARGIGAIHAPEVNGNVLSVEPGLGISGDGAGIHMPMPALAEDNKPLEIAFSLDLNGTGAFSLAPLGRNSELQLTSNWPHPGFLGSFLPTKREVNAAGYRAHWQSSWFANDMGSYFKDDMEIPWSRLPAFSADVMSLADQYQLTDRATKYAILLIGLTFMAFFAFESLTHRPLHPMQYLLVGLSLVLFYLVLLALSEHIGFTAAWLAASLCGAVMNGIYLQAVLRGWRNSLLFVAALLLLDGVMWFLLHSEDSALLLGTGVLALALSILMFLTRRVDWYALSLPKGSAPPPPSADDDKLRLWKE
>CP023478.1|AVR39377.1|4340965_4342198_-|Trifunctional-NAD-biosynthesis/regulator-protein-NadR
MSSFDYLKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRRQKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRELFEESAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSHGIRAFMSEKGIEPNRIYTSEEADAPQYLEHLGIETVLIDPKRTFMNISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQSLLVSLLKENEIEFVHVKESDYDTRFLRCVELVKQLMGEQG
>CP023478.1|AVR39378.1|4342219_4343602_-|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEMRIAASPQVARNERLSGYAGNAGVSKVQKLSDISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADEEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKVPEGMQIFGVKKLSDALSVFDDL
>CP023478.1|AVR39379.1|4343611_4344583_-|Phosphoserine-phosphatase
MPNSLTWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLDKRRLTAWQRELGAALVIVASWVVEDYQVIRLAGSLTPRATRLAHEAGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGELVSEVTERAMRGELDFTASLRQRVATLKDADANILLQVRDALPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVFANELEIRDGKLTGNVLGDIVDAKYKANTLRKLAEKYEIPTAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEQAEVTIRHADLMGVFCILSGSMNQK
>CP023478.1|AVR39380.1|4344687_4345335_+|protein-Smp
MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQMEELARTLAQQVVLNLAPLMRSETPDEKRIHQLLTQLTHNSRVLDAGVYDEQGDLVARSGESVEVRDRLALDGKKAGGYFNQQIVEPVPGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTANKPVEDEDDEKKGNL
>CP023478.1|AVR39381.1|4345334_4346351_+|Lipoate-protein-ligase-A
MSTLRLLLSDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDHVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTVSTAIVLAALNSLGVTAEASGRNDLVVKTDSGDRKVSGSAYRETMDRGFHHGTLLLNADLSRLANYLNPDQKKLQAKGITSVRGRVANLVELLPGITHQQVCEAIQEAFFSHYGERVDAEVISPDNTPDLPNFADTFARQSSWEWNFGQAPAFSHLLDERFPWGGVELHFDVEKGHITRAQAFTDSLNPAPLEALAARLVGCQYRAEVLQQQCEALVGDFPEQEAELKELSAWIAGAVR
>CP023478.1|AVR39382.1|4346440_4347160_-|Purine-nucleoside-phosphorylase-DeoD-type
MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVREDVKLRDVVIGMGACTDSKVNRLRFKDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDQE
>CP023478.1|AVR39383.1|4347263_4348487_-|Phosphopentomutase
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADHGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNVEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDMEYGKAMF
>CP023478.1|AVR39384.1|4348539_4349874_-|Thymidine-phosphorylase
MGVTVFLAQEIIRKKRDGQALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMSMPERVSLTMAMRDSGTVLDWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSAALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAADDTDARAKLQAVLDNGKAAEVFGRMVAAQKGPSDFVENYDHYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTEMARLGDRVDGQRPLAVIHAKDENSWQEAAKAVKAAIKLDDKAPEITPTVYRRITE
>CP023478.1|AVR39385.1|4349971_4350751_-|Deoxyribose-phosphate-aldolase
MTDLKASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAVCIYPRFIPIARKTLNEQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALIAGNEQVGFELVKACKEACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY
>CP023478.1|AVR39386.1|4351166_4352444_-|putative-transporter-protein
MQILMGLIGMVALLAIAVLLSNNRKAINLRTVLGAWIIQVGIGALILYVPAGRSALLAMSNGVASVIAYGNEGISFIFGGLVSDKMFEVFGGGGFVFALRVLPVIVFFSSLIAVLYYLGIMQLVIRILGGALRAVLKTSRTESLSATANIFVGQTEAPLVVRPYIATMTRSELFAVMCGGLASVAGSVLAGYAQMGVPLEYLIAASFMAAPGGLLFAKIIVPETEKPDDNPAHNRQSVDADKPANVLDAAASGAASGMQLALNVGAMLLAFIALIALLNGILSGVGGWFNHPELSLQMILGWVFSPLAWVIGVPWHEATVAGSFIGQKLIINEFVAYMNFGEYLKADAEVAAAGLQVISDHTKAIISFALCGFANLSSIAILIGGLGGMAPNRRQDIAQLGLRAVAAGTLSNLMSATIAGVFLAL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1418965 : 1426852

Escherichia_phage(33.33%)

integrase

attL 1424072:1424097|attR 1439454:1439479

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR36715.1\|1418965_1419424_-	Guanine deaminase	S4VYZ2	Pandoravirus	4.6e-11	38.5
AVR36716.1\|1419555_1420464_+	HTH-type transcriptional regulator cynR	A0A2P0ZL89	Lactobacillus_phage	3.9e-09	23.8
AVR36717.1\|1420494_1421307_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	8.8e-05	57.5
AVR36718.1\|1421719_1422202_-	hypothetical protein	NA	NA	NA	NA
AVR36719.1\|1422320_1423658_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	4.8e-16	34.9
1424072:1424097	attL	NA	NA	NA	NA
AVR36720.1\|1424291_1425458_+\|integrase	integrase family protein	A0A2R2Z2Y0	Escherichia_phage	7.8e-204	86.6
AVR36721.1\|1425570_1425942_+	hypothetical protein	NA	NA	NA	NA
AVR36722.1\|1426474_1426852_-	Insertion element IS1 protein InsB	Q71TF0	Escherichia_phage	1.9e-63	93.6
1439454:1439479	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1666868 : 1673762

Planktothrix_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR36930.1\|1666868_1667711_+	peptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.5e-10	27.5
AVR36931.1\|1667721_1668495_+	dipeptide transport ATP-binding protein DppD	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AVR36932.1\|1668736_1669633_-	putative lipid kinase	A0A1V0SBJ0	Catovirus	1.8e-14	29.3
AVR36933.1\|1669875_1671237_-\|protease	putative protease	Q6DW11	Phage_TP	7.4e-206	94.0
AVR36934.1\|1671555_1672278_-	Transcriptional regulatory protein baeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AVR36935.1\|1672274_1673762_-	Signal transduction histidine-protein kinase baeS	W8CYF6	Bacillus_phage	6.5e-30	28.3

DBSCAN-SWA_3

1790292 : 1825606

Salmonella_phage(13.89%)

capsid,tail,portal,integrase,protease,terminase,head

attL 1790118:1790177|attR 1830048:1830116

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1790118:1790177	attL	NA	NA	NA	NA
AVR37026.1\|1790292_1791285_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	1.1e-174	86.9
AVR37027.1\|1791286_1791514_-	hypothetical protein	Q8HAA9	Salmonella_phage	1.1e-29	78.4
AVR37028.1\|1791821_1792022_-	hypothetical protein	NA	NA	NA	NA
AVR37029.1\|1792011_1792452_-	phage protein	S4TSR6	Salmonella_phage	5.4e-33	65.7
AVR37030.1\|1792735_1793521_-	ParB family chromosome partitioning protein	C7BGF1	Burkholderia_phage	2.6e-62	52.9
AVR37031.1\|1793520_1793820_-	hypothetical protein	NA	NA	NA	NA
AVR37032.1\|1794367_1795027_-	lambda repressor-like protein	H9C160	Pectobacterium_phage	7.3e-74	62.7
AVR37033.1\|1795119_1795317_+	hypothetical protein	H9C161	Pectobacterium_phage	2.7e-16	66.1
AVR37034.1\|1795342_1795804_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
AVR37035.1\|1795999_1796287_-	hypothetical protein	NA	NA	NA	NA
AVR37036.1\|1796276_1797164_+	PaaX family transcriptional regulator	U5P0A0	Shigella_phage	1.5e-77	67.0
AVR37037.1\|1797160_1797970_+	DNA methylase	A0A1C9II58	Salmonella_phage	7.0e-111	69.7
AVR37038.1\|1797979_1798357_+	crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	6.7e-48	72.8
AVR37039.1\|1798369_1799350_+	phage protein	A0A291AWV9	Escherichia_phage	5.4e-134	66.6
AVR37040.1\|1799363_1799942_+	hypothetical protein	A0A0U2S606	Escherichia_phage	7.6e-51	57.2
AVR37041.1\|1800417_1800891_-	phage protein	NA	NA	NA	NA
AVR37042.1\|1801440_1801836_+	membrane protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
AVR37043.1\|1801822_1802104_+	membrane protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
AVR37044.1\|1802103_1802733_+	chitinase	F1C591	Cronobacter_phage	1.0e-85	73.9
AVR37045.1\|1802735_1803011_+	hypothetical protein	G8C7W1	Escherichia_phage	1.3e-24	70.8
AVR37046.1\|1803152_1803413_+	hypothetical protein	G8C7W3	Escherichia_phage	9.6e-22	58.0
AVR37047.1\|1804201_1804426_-	hypothetical protein	NA	NA	NA	NA
AVR37048.1\|1804645_1804879_+	hypothetical protein	NA	NA	NA	NA
AVR37049.1\|1805374_1805872_+\|terminase	phage terminase small subunit	K7PHI2	Enterobacteria_phage	1.9e-63	72.0
AVR37050.1\|1805875_1807627_+\|terminase	terminase	A0A1P8DTK0	Proteus_phage	1.2e-251	72.0
AVR37051.1\|1807623_1807785_+	membrane protein	NA	NA	NA	NA
AVR37052.1\|1807774_1809001_+\|portal	putative phage portal protein	Q8SBI0	Shigella_phage	7.1e-208	85.0
AVR37053.1\|1808993_1809593_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
AVR37054.1\|1809602_1810841_+\|capsid	HK97 family phage major capsid protein	Q8SBH8	Shigella_phage	1.8e-158	69.4
AVR37055.1\|1810918_1811236_+	hypothetical protein	A0A1W6JNZ5	Morganella_phage	1.1e-22	51.0
AVR37056.1\|1811244_1811583_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	68.8
AVR37057.1\|1811579_1812029_+	HK97 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
AVR37058.1\|1812025_1812373_+	hypothetical protein	K7PKL6	Enterobacterial_phage	1.5e-30	61.1
AVR37059.1\|1812434_1813139_+\|tail	tail protein	K7PHL2	Enterobacterial_phage	5.5e-80	66.5
AVR37060.1\|1813208_1813574_+\|tail	phage tail assembly chaperone	Q9MCS5	Enterobacteria_phage	4.8e-27	52.9
AVR37061.1\|1813576_1813882_+	hypothetical protein	Q9MCS5	Enterobacteria_phage	3.6e-28	64.6
AVR37062.1\|1813956_1814478_+	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	2.2e-09	45.2
AVR37063.1\|1814540_1818122_+\|tail	lambda family phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	8.6e-254	61.7
AVR37064.1\|1818142_1818616_+	membrane protein	A0A286S298	Klebsiella_phage	6.4e-56	62.1
AVR37065.1\|1818602_1819079_+	ArsR family transcriptional regulator	A0A286S2B1	Klebsiella_phage	5.3e-50	64.6
AVR37066.1\|1819091_1819472_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.2e-57	80.2
AVR37067.1\|1819468_1822546_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	61.7
AVR37068.1\|1822669_1825606_+	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	3.6e-40	68.0
1830048:1830116	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2655495 : 2666381

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR37860.1\|2655495_2658603_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.2
AVR37861.1\|2658657_2659923_+	putative proton/sugar symporter, LacY	NA	NA	NA	NA
AVR37862.1\|2659953_2661042_-	RecF/RecN/SMC N-terminal domain-containing protein	A0A077SLJ9	Escherichia_phage	1.9e-204	96.7
AVR37863.1\|2661128_2661410_-	putative K+ transporting ATPase, KdpC subunit	A0A077SK33	Escherichia_phage	1.4e-39	96.5
AVR37864.1\|2661685_2662546_+	Beta-lactamase OKP-B	A0A077SL40	Escherichia_phage	2.4e-141	88.8
AVR37865.1\|2662566_2663328_-	putative HTH-type transcriptional regulator	A0A077SK06	Escherichia_phage	2.0e-131	98.4
AVR37866.1\|2663588_2664491_+	putative oxidoreductase	A0A077SLF7	Escherichia_phage	4.1e-152	96.7
AVR37867.1\|2664502_2665768_+	Hrp pili protein HrpA	A0A077SLJ7	Escherichia_phage	1.3e-217	92.4
AVR37868.1\|2665760_2666381_+	Putative aldolase class 2 protein	A0A077SK32	Escherichia_phage	3.1e-111	95.6

DBSCAN-SWA_5

3322360 : 3331822

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR38467.1\|3322360_3324082_+	ATP-binding/permease protein cydC	A0A2R8FG22	Brazilian_cedratvirus	1.3e-13	32.5
AVR38468.1\|3324121_3324826_+\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AVR38469.1\|3325176_3325395_+	Translation initiation factor IF-1	NA	NA	NA	NA
AVR38470.1\|3325518_3327798_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-165	42.0
AVR38471.1\|3327828_3328146_-\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AVR38472.1\|3328471_3328693_+	DNA replication inhibitor	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AVR38473.1\|3328769_3330710_-	Macrolide export ATP-binding/permease protein MacB 1	G9BWD6	Planktothrix_phage	1.4e-37	40.5
AVR38474.1\|3330706_3331822_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_6

4500033 : 4508575

Enterobacteria_phage(85.71%)

capsid,integrase

attL 4497604:4497626|attR 4508637:4508659

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4497604:4497626	attL	NA	NA	NA	NA
AVR39520.1\|4500033_4501305_-\|integrase	phage integrase	B7SYF8	Stenotrophomonas_phage	1.1e-73	40.2
AVR39521.1\|4501647_4502343_-	hypothetical protein	NA	NA	NA	NA
AVR39522.1\|4502732_4505075_-	nucleoside triphosphatase, D5 family	Q7M2A8	Enterobacteria_phage	0.0e+00	83.2
AVR39523.1\|4505089_4505410_-	P4 phage protein	NA	NA	NA	NA
AVR39524.1\|4505406_4505634_-	bacteriophage protein	NA	NA	NA	NA
AVR39525.1\|4505630_4506188_-	CI repressor	Q7M2A7	Enterobacteria_phage	8.7e-28	63.9
AVR39526.1\|4506184_4506451_-	phage transcriptional regulator, AlpA	Q7M299	Enterobacteria_phage	2.6e-30	71.6
AVR39527.1\|4507011_4507749_+\|capsid	phage capsid and scaffold protein	Q7M2A2	Enterobacteria_phage	4.5e-72	60.9
AVR39528.1\|4507745_4507991_+	phage transcriptional activator, Ogr/delta	Q7M294	Enterobacteria_phage	1.2e-18	56.8
AVR39529.1\|4508008_4508575_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.7e-58	63.2
4508637:4508659	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP023479

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3517 : 45675

Salmonella_phage(28.57%)

integrase,transposase

attL 4488:4547|attR 31457:32514

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR40130.1\|3517_3730_+\|transposase	transposase	U5P429	Shigella_phage	1.6e-14	56.1
AVR40131.1\|3867_4404_-	putative plasmid transfer protein	NA	NA	NA	NA
4488:4547	attL	NA	NA	NA	NA
AVR40132.1\|4519_5488_+\|transposase	putative transposase for transposon Tn903	A0A1B0VFY5	Salmonella_phage	3.7e-183	98.1
AVR40133.1\|5758_7594_+	peptidase	NA	NA	NA	NA
AVR40134.1\|7642_7927_-	hypothetical protein	NA	NA	NA	NA
AVR40135.1\|7939_8203_+\|transposase	transposase	NA	NA	NA	NA
AVR40136.1\|8538_9060_+	hypothetical protein	S5WIU1	Leptospira_phage	2.8e-36	46.6
AVR40137.1\|9170_9899_+	hypothetical protein	NA	NA	NA	NA
AVR40138.1\|10291_11791_-	putative protein kinase	NA	NA	NA	NA
AVR40139.1\|11818_13552_-	phosphatase 2C family protein	NA	NA	NA	NA
AVR40140.1\|13551_14592_-	TerY3	NA	NA	NA	NA
AVR40141.1\|14684_15323_-	von Willebrand factor type A domain protein	NA	NA	NA	NA
AVR40142.1\|15323_15965_-	Tellurium resistance protein TerX	A0A2P1N0C0	Streptomyces_phage	2.4e-05	25.1
AVR40143.1\|15989_16628_-	tellurite resistance protein TerY	NA	NA	NA	NA
AVR40144.1\|17993_18257_+\|transposase	transposase	NA	NA	NA	NA
AVR40145.1\|18592_19114_+	hypothetical protein	S5WIU1	Leptospira_phage	2.8e-36	46.6
AVR40146.1\|19388_19601_+	hypothetical protein	U5P429	Shigella_phage	1.6e-14	56.1
AVR40147.1\|19752_20052_+	hypothetical protein	NA	NA	NA	NA
AVR40148.1\|20111_20954_+	hypothetical protein	Q6QIC8	Burkholderia_phage	5.7e-15	50.5
AVR40149.1\|21039_21273_-	hypothetical protein	NA	NA	NA	NA
AVR40150.1\|21258_22191_+	Insertion element IS630 putative 39 kDa protein	NA	NA	NA	NA
AVR40151.1\|22757_23012_-	hemolysin expression modulating protein	NA	NA	NA	NA
AVR40152.1\|23190_24327_+\|integrase	site-specific recombinase, phage integrase family	NA	NA	NA	NA
AVR40153.1\|24388_24706_-	hypothetical protein	NA	NA	NA	NA
AVR40154.1\|24835_25510_-\|transposase	transposase	Q1MVF0	Enterobacteria_phage	8.6e-123	96.4
AVR40155.1\|25509_25803_-\|transposase	transposase	A0A1B0VFY5	Salmonella_phage	1.9e-42	98.8
AVR40156.1\|26303_27005_-	hypothetical protein	NA	NA	NA	NA
AVR40157.1\|27046_28018_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
AVR40158.1\|28060_28468_-	hypothetical protein	NA	NA	NA	NA
AVR40159.1\|28477_28942_-	hypothetical protein	NA	NA	NA	NA
AVR40160.1\|28989_29232_-	hypothetical protein	NA	NA	NA	NA
AVR40161.1\|29218_29695_-	hypothetical protein	NA	NA	NA	NA
AVR40162.1\|29856_30141_+\|transposase	ISEc14 transposase A	NA	NA	NA	NA
AVR40163.1\|30515_31484_-\|transposase	putative transposase for transposon Tn903	A0A1B0VFY5	Salmonella_phage	3.7e-183	98.1
AVR40164.1\|31567_32143_+	hypothetical protein	NA	NA	NA	NA
AVR40165.1\|32391_33039_-\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	5.1e-80	74.1
31457:32514	attR	NA	NA	NA	NA
AVR40166.1\|33257_33767_-\|transposase	IS3 family transposase orfA	A0A2I6AZV8	Macacine_betaherpesvirus	8.1e-49	59.0
AVR40167.1\|34461_34650_+	hypothetical protein	NA	NA	NA	NA
AVR40168.1\|34831_35302_-	RES domain protein	NA	NA	NA	NA
AVR40169.1\|35298_35742_-	hypothetical protein	NA	NA	NA	NA
AVR40170.1\|35907_36324_-	protein impB	I6RSM4	Salmonella_phage	4.3e-32	57.6
AVR40171.1\|36711_37707_-	hypothetical protein	NA	NA	NA	NA
AVR40172.1\|39619_39958_+	hypothetical protein	NA	NA	NA	NA
AVR40173.1\|41496_41766_-	hypothetical protein	NA	NA	NA	NA
AVR40174.1\|42357_42807_+	hypothetical protein	NA	NA	NA	NA
AVR40175.1\|42820_43609_+	hypothetical protein	NA	NA	NA	NA
AVR40176.1\|44554_44818_+\|transposase	transposase	NA	NA	NA	NA
AVR40177.1\|44850_45675_+\|transposase	transposase	S5WIU1	Leptospira_phage	1.1e-50	43.3

DBSCAN-SWA_2

67996 : 112122

Enterobacteria_phage(25.0%)

integrase,transposase

attL 69860:69877|attR 97345:97362

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR40200.1\|67996_68473_-\|transposase	putative transposase-related protein	S5WIU1	Leptospira_phage	6.3e-35	48.3
AVR40201.1\|68876_69551_-\|transposase	transposase	Q1MVF0	Enterobacteria_phage	2.2e-118	92.0
69860:69877	attL	NA	NA	NA	NA
AVR40202.1\|70037_70205_+\|integrase	integrase	NA	NA	NA	NA
AVR40203.1\|70489_71617_+	regulator	NA	NA	NA	NA
AVR40204.1\|71613_72207_+	hypothetical protein	NA	NA	NA	NA
AVR40205.1\|72203_73052_+	peptide ABC transporter permease	NA	NA	NA	NA
AVR40206.1\|73051_73972_+	putative glutathione ABC transporter, permease protein GsiC	NA	NA	NA	NA
AVR40207.1\|73981_75589_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AVR40208.1\|75633_76581_+	Acetamidase/Formamidase family protein	A0A1V0S8X7	Catovirus	2.3e-12	23.0
AVR40209.1\|76588_78322_+	putative phosphonate C-P lyase system protein PhnK	G9BWD6	Planktothrix_phage	6.9e-15	29.6
AVR40210.1\|79016_79394_+	Insertion element IS1 protein InsB	Q71TF0	Escherichia_phage	8.4e-67	99.2
AVR40211.1\|79614_80868_-	Lactose permease	NA	NA	NA	NA
AVR40212.1\|80919_83994_-	Beta-galactosidase 2	L0N6M2	Herpes_simplex_virus	0.0e+00	96.3
AVR40213.1\|84115_85198_-	Lactose operon repressor	C6ZCU4	Enterobacteria_phage	1.9e-188	97.8
AVR40214.1\|85420_85636_+	hypothetical protein	NA	NA	NA	NA
AVR40215.1\|85658_86669_+	putative alginate lyase	NA	NA	NA	NA
AVR40216.1\|87072_88077_+\|transposase	putative transposase	NA	NA	NA	NA
AVR40217.1\|88732_88900_+	hypothetical protein	NA	NA	NA	NA
AVR40218.1\|88947_89241_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
AVR40219.1\|89339_90107_-	iron-dicitrate transporter ATP-binding subunit	G3M9Y6	Bacillus_virus	9.8e-14	25.2
AVR40220.1\|90107_91064_-	Fe(3+) dicitrate transport system permease protein FecD	NA	NA	NA	NA
AVR40221.1\|91060_92059_-	Fe(3+) dicitrate transport system permease protein FecC	NA	NA	NA	NA
AVR40222.1\|92055_92958_-	Fe(3+) dicitrate-binding periplasmic protein	NA	NA	NA	NA
AVR40223.1\|93002_95327_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
AVR40224.1\|95413_96367_-	Protein FecR	NA	NA	NA	NA
AVR40225.1\|96363_96885_-	putative RNA polymerase sigma factor FecI	NA	NA	NA	NA
AVR40226.1\|97360_97465_-	TnpA	U5N3F9	Enterobacteria_phage	1.5e-10	93.5
97345:97362	attR	NA	NA	NA	NA
AVR40227.1\|97518_98736_-	Creatinase	NA	NA	NA	NA
AVR40228.1\|98822_99776_-	LysR substrate-binding domain protein	Q6JIH3	Burkholderia_virus	3.3e-11	25.0
AVR40229.1\|99931_100780_+	ABC-type amino acid transport/signal transduction system protein	NA	NA	NA	NA
AVR40230.1\|100803_101475_+	ABC transporter, permease protein	NA	NA	NA	NA
AVR40231.1\|101471_102134_+	Amino acid ABC transporter	NA	NA	NA	NA
AVR40232.1\|102138_102957_+	amino acid ABC transporter	G9BWD6	Planktothrix_phage	1.4e-29	39.6
AVR40233.1\|102953_103919_+	multidrug DMT transporter permease	NA	NA	NA	NA
AVR40234.1\|104174_104789_-	hypothetical protein	NA	NA	NA	NA
AVR40235.1\|104969_105806_-	diguanylate phosphodiesterase	NA	NA	NA	NA
AVR40236.1\|107618_108065_-	lipoprotein	NA	NA	NA	NA
AVR40237.1\|108482_109322_-	Sea24	NA	NA	NA	NA
AVR40238.1\|109321_109495_-	hypothetical protein	NA	NA	NA	NA
AVR40239.1\|110045_110690_+	hypothetical protein	NA	NA	NA	NA
AVR40240.1\|110718_112122_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

122659 : 157645

Escherichia_phage(33.33%)

integrase,tRNA,transposase

attL 117323:117338|attR 153712:153727

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
117323:117338	attL	NA	NA	NA	NA
AVR40254.1\|122659_123736_-\|transposase	putative transposase	NA	NA	NA	NA
AVR40255.1\|123954_124362_-\|integrase	integrase	Q716C2	Shigella_phage	2.5e-64	95.8
AVR40256.1\|124788_125757_-\|transposase	putative transposase for transposon Tn903	A0A1B0VFY5	Salmonella_phage	3.8e-172	91.3
AVR40257.1\|126539_127520_+	Transposase InsH for insertion sequence element IS5Y	A0A077SK28	Escherichia_phage	2.3e-185	99.1
AVR40258.1\|127985_128621_-\|transposase	transposase	Q38213	Escherichia_phage	2.1e-33	52.8
AVR40259.1\|128728_129598_-	transcriptional regulator	NA	NA	NA	NA
AVR40260.1\|129591_130602_-	Phosphonate dehydrogenase	A0A1V0SBV6	Catovirus	1.8e-15	25.1
AVR40261.1\|130610_131450_-	phosphate ABC transporter permease	NA	NA	NA	NA
AVR40262.1\|131446_132310_-	putative phosphite transport system-binding protein PtxB	NA	NA	NA	NA
AVR40263.1\|132306_133134_-	Phosphite import ATP-binding protein PxtA	G9BWD6	Planktothrix_phage	2.6e-20	37.6
AVR40264.1\|133475_133796_+\|transposase	transposase	Q38213	Escherichia_phage	3.2e-27	52.9
AVR40265.1\|134104_134809_-\|transposase	transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVR40266.1\|134896_135223_-	hypothetical protein	NA	NA	NA	NA
AVR40267.1\|135477_135834_-	cupin	NA	NA	NA	NA
AVR40268.1\|135823_136225_-	hypothetical protein	NA	NA	NA	NA
AVR40269.1\|136221_136488_-	DNA polymerase	NA	NA	NA	NA
AVR40270.1\|136670_137105_+\|transposase	transposase Tn3 family protein	A0A1B0V7H9	Salmonella_phage	1.0e-39	58.3
AVR40271.1\|137151_137856_+\|transposase	transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVR40272.1\|138875_139250_+	camphor resistance protein CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
AVR40273.1\|139449_140154_-\|transposase	transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVR40274.1\|140319_141501_+	sodium:proton antiporter	A0A2H4J5W3	uncultured_Caudovirales_phage	1.8e-123	65.9
AVR40275.1\|141854_142187_-	small multidrug resistance protein SugE	NA	NA	NA	NA
AVR40276.1\|142318_142570_-	DNA invertase	Q1MVP4	Enterobacteria_phage	5.8e-08	43.4
AVR40277.1\|142635_143340_+\|transposase	transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVR40278.1\|143655_144123_-	hypothetical protein	NA	NA	NA	NA
AVR40279.1\|144119_145628_-	putative retA reverse transcriptase	A0A0U4J920	Pseudomonas_phage	1.1e-24	32.2
AVR40280.1\|146066_146459_+	protein SamA	A0A1W6JNS2	Morganella_phage	1.3e-30	51.6
AVR40281.1\|146458_147730_+	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.3e-155	63.7
AVR40282.1\|147896_148148_+	putative plasmid stability protein	NA	NA	NA	NA
AVR40283.1\|148144_148432_+	Putative RelE-like toxin protein	A0A2H4JBF4	uncultured_Caudovirales_phage	1.7e-19	47.4
AVR40284.1\|148855_149233_+	Insertion element IS1 protein InsB	Q71TF0	Escherichia_phage	1.9e-63	93.6
AVR40285.1\|149453_150851_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.4e-20	38.9
AVR40286.1\|151003_151771_-\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA
AVR40287.1\|151767_152145_-	Insertion element iso-IS1d protein InsB	Q71TF0	Escherichia_phage	1.3e-67	100.0
AVR40288.1\|152230_153769_-\|transposase	putative transposase	A0A0P0ZEB3	Stx2-converting_phage	6.1e-273	91.8
153712:153727	attR	NA	NA	NA	NA
AVR40289.1\|153818_154166_-\|transposase	putative transposase	A0A0P0ZDM8	Stx2-converting_phage	4.1e-60	96.5
AVR40290.1\|154162_154561_-\|transposase	putative transposase	B6DZU5	Stx2-converting_phage	6.6e-62	92.5
AVR40291.1\|154917_155352_-	putative copper-binding protein PcoE	NA	NA	NA	NA
AVR40292.1\|155567_156968_-	putative sensor protein PcoS	W8CYF6	Bacillus_phage	2.4e-18	26.6
AVR40293.1\|156964_157645_-	Transcriptional regulatory protein PcoR	W8CYM9	Bacillus_phage	3.9e-30	34.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023478

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP023479

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection