CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028324	Massilia sp. ZMN-3 chromosome, complete genome	12 crisprs	WYL,csa3,DEDDh,DinG,cas3	1	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028324_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_1

130289-130395

Orphan

Consensus_repeat	Method
GTGTCCCGTTTTGGGGTCTGACCCCGCGGTGGGACACGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_1

>merge|CP028324|1|130289-130395|CRISPRCasFinder
GTGTCCCGTTTTGGGGTCTGACCCCGCGGTGGGACACGGGCGCGGCAGTGATTGATGGCTGAGCTTGTGTCCCGTTTTGGGGTCTGACCCCGCGGTGGGACACGGGC

>CP028324|1|1|130289-130395|CRISPRCasFinder
GTGTCCCGTTTTGGGGTCTGACCCCGCGGTGGGACACGGGC	GCGGCAGTGATTGATGGCTGAGCTT
GTGTCCCGTTTTGGGGTCTGACCCCGCGGTGGGACACGGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR94373.1\|134283_135393_+\|porin	unknown	unknown	gnl\|CDD\|238208
CP028324.1\|AVR94363.1\|124268_125033_+\|ZIP-family-zinc-transporter	unknown	unknown	gnl\|CDD\|223505
CP028324.1\|AVR94375.1\|137153_138071_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|375319
CP028324.1\|AVR94374.1\|135415_137152_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
CP028324.1\|AVR94372.1\|132931_134089_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
CP028324.1\|AVR94359.1\|118779_121644_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
CP028324.1\|AVR94369.1\|130405_131158_-\|L-asparaginase	unknown	unknown	unknown
CP028324.1\|AVR94362.1\|123143_124136_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176854
CP028324.1\|AVR94371.1\|131914_132811_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
CP028324.1\|AVR94366.1\|126513_126894_-\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319937
CP028324.1\|AVR94360.1\|121653_122274_-\|2-hydroxychromene-2-carboxylate-isomerase	unknown	unknown	gnl\|CDD\|239320
CP028324.1\|AVR94368.1\|129276_130284_+\|3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240646
CP028324.1\|AVR94370.1\|131369_131855_+\|asparaginase	unknown	unknown	gnl\|CDD\|376375
CP028324.1\|AVR94364.1\|125037_125562_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
CP028324.1\|AVR94378.1\|140527_142120_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP028324.1\|AVR94376.1\|138857_139343_+\|cyclic-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|237999
CP028324.1\|AVR94367.1\|127053_128919_-\|phosphoenolpyruvate-carboxykinase-(GTP)	unknown	unknown	gnl\|CDD\|235256
CP028324.1\|AVR94377.1\|139342_140458_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
CP028324.1\|AVR94361.1\|122472_123087_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP028324.1\|AVR94365.1\|125595_126450_-\|autotransporter	unknown	unknown	gnl\|CDD\|185219

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR94373.1\|134283_135393_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	7.12294e-42
CP028324.1\|AVR94363.1\|124268_125033_+\|ZIP-family-zinc-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	1.1632e-11
CP028324.1\|AVR94375.1\|137153_138071_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.1712e-25
CP028324.1\|AVR94374.1\|135415_137152_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	3.61188e-112
CP028324.1\|AVR94372.1\|132931_134089_-\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	2.89071e-132
CP028324.1\|AVR94359.1\|118779_121644_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP028324.1\|AVR94365.1\|125595_126450_-\|autotransporter	gnl\|CDD\|185219	PRK15319, PRK15319, fibronectin-binding autotransporter adhesin ShdA.	1.57699e-08
CP028324.1\|AVR94362.1\|123143_124136_+\|hypothetical-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	4.42937e-07
CP028324.1\|AVR94371.1\|131914_132811_-\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	1.46612e-154
CP028324.1\|AVR94366.1\|126513_126894_-\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	1.76389e-27
CP028324.1\|AVR94360.1\|121653_122274_-\|2-hydroxychromene-2-carboxylate-isomerase	gnl\|CDD\|239320	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).	2.15904e-60
CP028324.1\|AVR94368.1\|129276_130284_+\|3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	5.68719e-163
CP028324.1\|AVR94370.1\|131369_131855_+\|asparaginase	gnl\|CDD\|376375	pfam00710, Asparaginase, Asparaginase, N-terminal. This is the N-terminal domain of this enzyme.	6.17837e-25
CP028324.1\|AVR94364.1\|125037_125562_-\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	4.35921e-30
CP028324.1\|AVR94378.1\|140527_142120_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP028324.1\|AVR94376.1\|138857_139343_+\|cyclic-nucleotide-binding-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	1.15276e-24
CP028324.1\|AVR94367.1\|127053_128919_-\|phosphoenolpyruvate-carboxykinase-(GTP)	gnl\|CDD\|235256	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP).	0
CP028324.1\|AVR94377.1\|139342_140458_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	4.65773e-33
CP028324.1\|AVR94361.1\|122472_123087_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.0652e-07

>CP028324.1|AVR94368.1|129276_130284_+|3-phosphoglycerate-dehydrogenase
MKIAILDDYQDAVRELECFSLLDDHDVKVFNNSIRGTGQLVARLTPFDAVVLIRERTQLNRALLSRLPNLKLISQTGKVSGHVDVAAATELGIAIAEGIGSPTAPAELTWALIMAASRKIVPYAANLKAGVWQTVSTNQPFNTLGMVLRGRTLGIWSYGKIGKLIAGYGRAFGMEVLVWGGEASRAAAVADGYRAAPSKEALFQEADVLTLHLRLADATRGIVTASDLERMKPDALFVNTSRAELVEDGALESALRGGRPGSAALDVFPSEPLPEDSPLLRMPQVLATPHLGYVEKDSYELYFRHAFQNLLDFEAGQCQTILNPGYRQHVKPANG
>CP028324.1|AVR94367.1|127053_128919_-|phosphoenolpyruvate-carboxykinase-(GTP)
MNQPVMGGVATVNAPAYIKQQKLINWVAEVAALTKPDRIYWCDGSQEEYDRLCAEMVAAGTMKKLNEAKRPNSYLACSDPSDVARVEDRTFICSATKEQAGPTNNWTDPTEMRGTLNGLFDGCMTGRTMYVVPFSMGPLGSPIAHIGVELSDSPYVAVNMRIMTRMGKAVYDVLGENGEFVPCVHSVGAPLAAGQKDVAWPCNSTKYIVHFPETREIWSYGSGYGGNALLGKKCFALRIASNMGYQEAQQGGAGWLAEHMLILGVESPEGKKHYVAAAFPSACGKTNFAMLIPPATFKGWKITTIGDDIAWIKPGADGRLYAINPEAGYFGVAPGTNEKTNFNCMASLKENTIFTNVALTDDGDVWWEGMTKEAPAHLIDWQGKDWTPASGTKAAHPNARFTVSAVQNPVIDPAWDDPAGVPISAFIFGGRRSTTVPLVTEARDWIEGVYMAATMGSETTAAAAGQMGVVRRDPFAMLPFIGYNMSDYFQHWLDLGRKIADKNPANLPKIFCVNWFRTDEHGHFVWPGFGDNMRVLKWMLERIEGEAGGIETLFGTTPRYGDLKWDGIPFSPEEFETITSIDKDAWREELKLHAELFDKLAFRLPKELTDNKAKLEARLAG
>CP028324.1|AVR94366.1|126513_126894_-|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein
MPDPQVQFSPAIPVLRFFDERKAREFYVDFLGFTVDWEHRFADGMPLYLQLSLGGLALHLSEHHGDGTPGTVVFLPMAGIHTWQAQLAKQAYGYAHPTVDTVPWGEQMEIADPFGNRLRFCELGDD
>CP028324.1|AVR94365.1|125595_126450_-|autotransporter
MSRTVPALLALLSACSGVDVSPVTAVPPPPVDPGFVEVVPAPQASYLHRVAYGTPARPDGIAAGAEALLAERLPYLDAMQRRAVLRSTALPSGYLNLDAAARGYGAFTGNVIVTLDGAHGGLHARDAWRNDIGGGGKLTLRGSGTLALHGRNSWVGGTQVDGGTLEAASANALGGGDVYVGAGTLAGVARDRLIVQGNYTQLTRGTLALALHGADSGLHVQGVATIAGGTLRLRFADGYRPAPGSRHAVLTAAQRRGVYDTIVVEGRQATALYTPTGLMLRIDG
>CP028324.1|AVR94364.1|125037_125562_-|hypothetical-protein
MPMNQPQAGDKPELDDDTLAFARRVFQYARAGTTEELATLLAQGLPRNLRNERGDSLLMLASYHGHVDTTRLLLEQGADPELQNDAGQTPLMGAAFKGDLAMATLLIEHGAQVDAIGRDGKTALMFAAMFDRVDIVQLLLQHGADPAIVDGSGMGAIDLAAKMGAQNTYAMLVR
>CP028324.1|AVR94363.1|124268_125033_+|ZIP-family-zinc-transporter
MDGVAPWMQAGGWGLVAGGALLLGAAAGYWIKVPQRLIAAIMAFGSGVLISALSFELMDEAFKQGGFNSTAVGFLAGALVYTAANHVLTYYGAKHRKRSGEHQPKQEDDASSGAAIAVGALLDGIPESIVIGLSMLQGGAVSGVTVAAIFLSNIPEGLSSAAGMKKAGRSAVYIFGIWGGITLASGAAALAGFTLFSGLSEQVVAATTAVAAGAILAMLVDTMIPEAFNEAHDFAGLITVAGFLCAFALSKGGA
>CP028324.1|AVR94362.1|123143_124136_+|hypothetical-protein
MRQCQLFPAMKRFFRSPRFRSLWPLLVGVLYGLCLRLAFALDVGEFSIVSKAFLLMTPFSLGALAVFVAARGERTSVRRDAAVAAKAMILFLIALFLMLLEGVICIVLVLPVFVVAAVLGGVLAGWLHRHMLDRKGTVSAFALLPLLLGPIEAALPPVQSEQLVSTTMHIAAPPEAVFDQLADVRGIRPEELGFAFVHLIGLPKPIEADMHGSGAGAVRVSRWEKNVRFEEVITHWQRPQAMHYRFHIPPGSIPRDALDEHVELGGKYFTVLDGGYDLAPAPDGGTELTLTTRFLNKSQLKLYGDLWGRMVLQDFHRSILGLMRRRAERA
>CP028324.1|AVR94361.1|122472_123087_-|TetR-family-transcriptional-regulator
MNTSAKSEATYALIVDAAMEMAAGEGIGKLSLGELAKRTGISKSGVFSRVGSLESLQSAVLDEYDRRFGEEVFVPALQQPAGLPRLQAQVSLWLKKVTDESTRNSCLYTAGAFEFDDLEGPLRDRVEQGVARWRASLRKTVLQAMEAGHLRPDTDPEQLVFEIYSLIIGAMHDVRFLRDGTAPKRMQRAFNRLISTYKSFNEIE
>CP028324.1|AVR94360.1|121653_122274_-|2-hydroxychromene-2-carboxylate-isomerase
MSAPIDFYFDFASPYAYFAACRIDALAARHGRTVRWRPVLLVGLLKATGVLPAPMVPLRGPYAERDCARTAQLNGIVYRQPANFPALLLAPPRAALWIENEYGADMAAAFARRCFEAYFTEGVDIGQDDAVVRLAEEQGVDGTRLREGLHSAAIKEQLKTVGEEAIARGVFGVPFTIVDGEPFWGFDRFDQMEQWLTQAAATKAAA
>CP028324.1|AVR94359.1|118779_121644_+|excinuclease-ABC-subunit-UvrA
MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYCINHPDHALSAQSVSQMVDAVLGMPEGTKLMIMAPVVANRKGEHVDLFEAMQAQGFVRFRVQSGTHDAKIYEVEDLPKLKKTEKHTIDVVIDRVKVNPELKQRLAESFETALRLADGRAVAYEMDTGVEHVYSNKFACTSCGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVAFPNLSLASGAVKGWDRRNQFYYQMLSSLASHYDFDLDMPFEKLPAAAQNVVLHGSGKNVVPFTYVNERGRTVVKEHTFEGVVNNLARRYRETDSMAVKEELAKFINEKKCPTCTGARLRVEARHVKVGTGKQEKAIYEIAEKPLRDTLSFFEQLKLKGAKRDIADRIVKEIVSRLTFLNNVGLDYLSLDRSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIDTLKHLRDIGNSVLVVEHDEDAIRTADYIVDMGKGAGVHGGDVIAAGSLKEILKNKESLTAQYLNGSLKIEVPKKRHAADPNRQLVITGATGNNLKNQTLSVPVGLLTCVTGVSGSGKSTLVNDTLYPALSRHLYGSQTEPAPHDSISGLEHFDKVIAVDQAPIGRTPRSNPATYTGVFTPIRDLFSTVPTAKERGYSAGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVHYKGKSITDVLNMTVEDAHEFFKPVPTIARKLHTLLDVGLGYIKLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTLVIIEHNLDVIKTADWIVDLGPEGGAGGGKIIATGTPEEVAANPDSVTGKYLVPLLAAPAKKK
>CP028324.1|AVR94369.1|130405_131158_-|L-asparaginase
MKALAPGTVIFHRHRGYGVITAVNLLTGWIAARFGSESRTLDLNLSTDEVQYADGEAILFRRAPPDRMPHARLMAMVRALHQAGYQKLYLYSWPKPSGLHWRWHLFTGTRDWMQRSWREGWYGSGADYNVNPVMGWGDNPAATTEELIHALAKFDPQGLAQALGRDEDHTAWFAQVCDALLPGYMYSLDMQRPNGGPLTEMPPVPIIPVRAGLPQYSGPDIGWPPGWAGLWTKVHAMPARRINLTGIPEA
>CP028324.1|AVR94370.1|131369_131855_+|asparaginase
MTLRIIATGGTFDKHYNELNGTLGFADSHLPAAIARARLTVGVELEQLPLLDSLDMQDADRARVLASCQAAAERAIVIVHGTDTMPETAAVLGPAALDKTIVLTGAMIPYEIDNSDAFFNLGFACGVAQALPPGVYVAMNGTVFDWHNVQKNRAAGVFQTK
>CP028324.1|AVR94371.1|131914_132811_-|recombination-associated-protein-RdgC
MWFKNLQIYRLPAPWAFTPEQLEEALRPHAFTPASSNELMRQGWDSPRGNGSLVHVVNKQMLILLGTEKKLLPTTVVNQVAKARALEMEEQQGFAPGKKAMKELKERVHDELLPRAFTIRGNVWTWIDPVNGWLVVDAASPAKADEVIKLLLKAVDRMPLESLRVQRSPVGVMTAWLQDDEAPAGFTVDQDTELRATGESKAAVRYVRHTLEPEEVRRHIAAGKQCTRLAMTWDSKISFVLTEALAIKSVKPLDVLKENEAVTRNDDERFDGDFMLMTGELSKLLKDVVEALGGEATA
>CP028324.1|AVR94372.1|132931_134089_-|DNA-polymerase-IV
MSQPPRRIAHLDMDAFYASVELLRYPELRGEAVVIGGRSANAPVLRADGTRDYARLRDYAGRGVVTTSTYEARALGVFSAMGMMKAAALAPDAILLPADFDSYRHYSRLFKAAVAGIAPHIEDRGIDEIYIDLTDHPDETRALAQRIKDAVRDATGLSCSIGIAPNKLLAKICSDLEKPNGMTIVSYDDVPTRIWPLPVRKINGIGPKANTKLIALGIETVGQLAQAEPKLLQEHFGLNTAQWLRDVAHGHDTRAVVTSSEPKGISRETTFERDLHAKHDRAALSDIFTRLCMRLSEDLQRKRYAGRTVGIKLRYADFHTVTRDVTLPQPTADGATIRRAAGECLRRVPLEQRIRLLGVRVSALTPLDELTQQRQPVQGDLFERL
>CP028324.1|AVR94373.1|134283_135393_+|porin
MTDTIASRPPRGLALFLSGLLLAGPVLAQGSVTVMGGVDAFAGSLKNSGDAARTTVVGSGGMTTSWFGFKGSEDLGGGVRAEFFLTGFFQTDTGASGRFGGDNMFSRDANVALVGSMGRLQVGRASAPSFLPNILFNPFGDSFTFSPLVLHSYVPTGRFGARTWAPTNAGDSGWSNHVVYTTPSWNGLRASLHYQAGEKAGQSSKHNVAISTLYSKDALTLSAFAHRVRDSNPNQGGAILDVTRAPVNYAAIDEQRAWFLGATYDFRLLKLYGTWQRTFDDAAGSEALGDRTASAGVAVPAGPGAILFGVADTRRSGRLIGDTRSRRTASLGYDYRLSKRTDLYTVAMGDRITALPTAMSYALGIRHSF
>CP028324.1|AVR94374.1|135415_137152_+|methyl-accepting-chemotaxis-protein
MTLSNLKIGGRLAVGFAITILIMLIMSLIGINRVQKMDDLAEAIVNDRYAKVALINDMRSYANRGAQALRNAMLAPDPAASAKFLEGLADADRVGAEKAQELEKIIVRADTKQKFADQRDAFTAYRDVREKTIAQFRGGDRDGAIAALFASVVPAQNAYFGKLDVLLKDQRELMASDGKAAGDAAHTATTTMIVLLIVATAVSALAGYLITRSVTQPILEAVHVAETVAGGDLTAVIDTHRKDETGRLLVALQEMTQGLTRTVRAVRDSTDTINTASAEIATGNMDLSNRTEQQAASLEETASSMEELTSTVRQNADNARQANVLVTSAAEHANQGGTVVGQVVQTMGSIKESSGKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAREIKELINDSVEKVDAGGRLVDEAGTTMGRIVASVQQVAAIMNEITSASQEQSAGIEQINTTIVAMDNATQQNAALVEEAAAAAASLREQAERLSTAIAVFRLDSMAAAVAPAVVAPKPAPAQPLKLAAAPVKPVAPREERRAAPSAPAPARAKPAAKAPQSDEWEEF
>CP028324.1|AVR94375.1|137153_138071_-|XRE-family-transcriptional-regulator
MPFITWDVIAAPRRNPQNGLMTADSTNAMDTAARDHYFSDFAQALRYWRGKRGLSQLALSAEANVSQRHLSFLESGRSQPSRELILKLGLVLDVPLRQRNAMLLAAGFAPAYQERDLSDPELAAVRQALEFMLAQAAPYPALVVDRLWNLVMANEPAVAMMRFLLDMPAHAPIPRDGSLNVIRLTLTALRPLIVNWEEVCADQLLWLQREAMSDGPGSEATALLRELTALPSLAASTQSPNLERRALPFLPLTLRKGDVTLNLFTTITTLGTPHDVTVHELRLESFFPADQASAAWFRALAEAKR
>CP028324.1|AVR94376.1|138857_139343_+|cyclic-nucleotide-binding-protein
MIFGFLKPPPLSPRLVRLRESDLLNTLTPLELKIVDGLMHERRYLAGEIIFDEGEEGQALYLVTAGHVQISRTINGAPEILTELSPGAFFGDLALLDNSPRNAQARAWDNCELAVFFRADFMSLMETDAVIGYKISLALARHIASMLRGAMDPGRPPAGAL
>CP028324.1|AVR94377.1|139342_140458_+|AI-2E-family-transporter
MTEHQRSGPIVWSGIIAATCVLLYLLQQVLWLSVPFLVGIILYYMLLSPMQRLLRMGYSRNTAALIVGAGFLLFLLLAVLAMIAWIPAPSTTWHEMPSRYLSAGMRFLRNMMGALEDQFPFLQPAHLGDSMNASLASYTRGFVKRHLTDVLMAAAAWVPSLLLAPFLTFFFLRDGRRFKRFLARAVPNAFFEKTLYLLHEVDQTARRYFHGMLKLTIIDTLVLSVGLWAIGMKAALVLGFIAAVLAWVPYVGSIAGCLLVVLVAAADAPDNNMMAYSAIFVFIAARLLDDFIFMPMTLGRSLRIHPLVTVLMIFIGGALAGVTGLMLVLPLLGVVMVVGETIGVLVTDARLQARHRYARALRVKQASNDLK
>CP028324.1|AVR94378.1|140527_142120_-|alkyl-hydroperoxide-reductase-subunit-F
MLDANLKTQLKAYLEKVVQPIEIVASLDDSAKAREMQELLADIEGLSDKITVIEDNAANVRKPSFSINRAGSDIGVRFAGIPMGHEFTSLVLALLQVGGHTIKLDEATIEQIRNLDGDYEFETFISLSCHNCPEVVQALNAMSVINPRIKVTTIDGGVFQKEVEDRQIMAVPMMFLNGEHFGQGRTNVEEILAKLDTNAGARQAAELNKKDVFDVLIVGGGPAGAASAIYAARKGINTGVLAERFGGQVLDTLAIENFVSIKETDGPKFAVALEQHVKEYEVDIINTQRAIKLVPGRIAEVHTATGAVLKAKTVILSTGARWREINVPGEKEYRNHGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVQHVTLIEFGAELRADAVLQRKLRSLPNVTVILSAQTTEIHGDGKKVNGLSYKDRNTNELHRVELEGVFVQIGLVPNTEWLKGTVALSKHGEIEIDAKGQTSVPGVFAAGDVTTVPYKQIVIAVGAGATAALSAFDHLIRSGDDEVEAEQEKIATAA

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Crispr_ID: CP028324_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_2

563276-563466

Orphan

Consensus_repeat	Method
CCGTGTCCCATTTTGGTGACTGACACCGCGGTGGGACACGAACT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP028324_2

>merge|CP028324|2|563276-563466|CRISPRCasFinder
CCGTGTCCCACCGCGGTGTCAGTCACCGGATCGGGACACGGCCTCGACGGTACTCCACAGACCTACGCCTCAGTCCGTGTCCCATTTTGGTGACTGACACCGCGGTGGGACACGAACTGGAGCGTACGCAGGCGACTACAGCCGGGCCCGTGTCCCGTTTTGGTGACTGACACCGCGGTGGGACACGAACT

>CP028324|2|2|563276-563466|CRISPRCasFinder
CCGTGTCCCACCGCGGTGTCAGTCACCGGATCGGGACACGGCCT	CGACGGTACTCCACAGACCTACGCCTCAGT
CCGTGTCCCATTTTGGTGACTGACACCGCGGTGGGACACGAACT	GGAGCGTACGCAGGCGACTACAGCCGGGC
CCGTGTCCCGTTTTGGTGACTGACACCGCGGTGGGACACGAACT

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR94731.1\|566636_568067_-\|peptidase-S41	unknown	unknown	gnl\|CDD\|223864
CP028324.1\|AVR94724.1\|557182_558493_+\|serine-deaminase	unknown	unknown	gnl\|CDD\|143492
CP028324.1\|AVR94733.1\|571303_573331_+\|peptidase-M13	unknown	unknown	gnl\|CDD\|341056
CP028324.1\|AVR94737.1\|577841_579854_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|274362
CP028324.1\|AVR94723.1\|556381_557122_+\|beta-ketoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|273823
CP028324.1\|AVR94735.1\|575814_576399_-\|cytochrome-c5-family-protein	unknown	unknown	gnl\|CDD\|225784
CP028324.1\|AVR94736.1\|577189_577858_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP028324.1\|AVR99014.1\|559584_560037_+\|DUF2721-domain-containing-protein	unknown	unknown	gnl\|CDD\|378544
CP028324.1\|AVR94729.1\|563483_565193_-\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
CP028324.1\|AVR94730.1\|565304_566426_-\|beta-ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236037
CP028324.1\|AVR94722.1\|555116_556295_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180261
CP028324.1\|AVR94732.1\|569056_571267_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028324.1\|AVR99015.1\|568387_568939_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240291
CP028324.1\|AVR94726.1\|560048_560501_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR94725.1\|558545_559502_+\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
CP028324.1\|AVR94721.1\|554666_555056_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378164
CP028324.1\|AVR94728.1\|561227_563255_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
CP028324.1\|AVR94734.1\|573453_575523_+\|peptidase-M13	unknown	unknown	gnl\|CDD\|226118
CP028324.1\|AVR94727.1\|560501_561140_-\|cyclase/dehydrase	unknown	unknown	gnl\|CDD\|176875
CP028324.1\|AVR94720.1\|553701_554610_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176132

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR94731.1\|566636_568067_-\|peptidase-S41	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	2.49443e-126
CP028324.1\|AVR94724.1\|557182_558493_+\|serine-deaminase	gnl\|CDD\|143492	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties of cryptic DSDs are still poorly understood. Typically, DSDs catalyze the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia.	2.75433e-166
CP028324.1\|AVR94733.1\|571303_573331_+\|peptidase-M13	gnl\|CDD\|341056	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I. The M13 family of metallopeptidases includes neprilysin (neutral endopeptidase, NEP, enkephalinase, CD10, CALLA, EC 3.4.24.11), endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), erythrocyte surface antigen KELL (ECE-3), phosphate-regulating gene on the X chromosome (PHEX), soluble secreted endopeptidase (SEP), and damage-induced neuronal endopeptidase (DINE)/X-converting enzyme (XCE). Proteins in this family fulfill a broad range of physiological roles due to the greater variation in the active site's S2' subsite allowing substrate specificity. NEP is expressed in a variety of tissues including kidney and brain, and is involved in many physiological and pathological processes, including blood pressure and inflammatory response. It degrades a wide array of substrates such as substance P, enkephalins, cholecystokinin, neurotensin and somatostatin. It is an important enzyme in the regulation of amyloid-beta (Abeta) protein that forms amyloid plaques that are associated with Alzeimers disease (AD). ECE-1 catalyzes the final rate-limiting step in the biosynthesis of endothelins via post-translational conversion of the biologically inactive big endothelins. Like NEP, it also hydrolyzes bradykinin, substance P, neurotensin, and Abeta. Endothelin-1 overproduction has been implicated in various diseases including stroke, asthma, hypertension, and cardiac and renal failure. Kell is a homolog of NEP and constitutes a major antigen on human erythrocytes; it preferentially cleaves big endothelin-3 to produce bioactive endothelin-3, but is also known to cleave substance P and neurokinin A. PHEX forms a complex interaction with fibroblast growth factor 23 (FGF23) and matrix extracellular phosphoglycoprotein, causing bone mineralization. A loss-of-function mutation in PHEX disrupts this interaction leading to hypophosphatemic rickets; X-linked hypophosphatemic (XLH) rickets is the most common form of metabolic rickets. ECEL1 is a brain metalloprotease which plays a critical role in the nervous regulation of the respiratory system, while DINE is abundantly expressed in the hypothalamus and its expression responds to nerve injury. A majority of these M13 proteases are prime therapeutic targets for selective inhibition.	0
CP028324.1\|AVR94737.1\|577841_579854_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.15033e-37
CP028324.1\|AVR94723.1\|556381_557122_+\|beta-ketoacyl-ACP-reductase	gnl\|CDD\|273823	TIGR01829, Acetoacetyl-CoA_reductase, acetoacetyl-CoA reductase. This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.	3.80316e-130
CP028324.1\|AVR94735.1\|575814_576399_-\|cytochrome-c5-family-protein	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	4.14949e-21
CP028324.1\|AVR94736.1\|577189_577858_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.15135e-47
CP028324.1\|AVR99014.1\|559584_560037_+\|DUF2721-domain-containing-protein	gnl\|CDD\|378544	pfam11026, DUF2721, Protein of unknown function (DUF2721). This family is conserved in bacteria. The function is not known.	1.17369e-32
CP028324.1\|AVR94729.1\|563483_565193_-\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
CP028324.1\|AVR94730.1\|565304_566426_-\|beta-ketoacyl-ACP-synthase-III	gnl\|CDD\|236037	PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
CP028324.1\|AVR94722.1\|555116_556295_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
CP028324.1\|AVR94732.1\|569056_571267_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.76904e-52
CP028324.1\|AVR99015.1\|568387_568939_+\|hypothetical-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	0.00313298
CP028324.1\|AVR94725.1\|558545_559502_+\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	3.36158e-116
CP028324.1\|AVR94721.1\|554666_555056_+\|hypothetical-protein	gnl\|CDD\|378164	pfam09361, Phasin_2, Phasin protein. This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.	9.57208e-05
CP028324.1\|AVR94728.1\|561227_563255_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
CP028324.1\|AVR94734.1\|573453_575523_+\|peptidase-M13	gnl\|CDD\|226118	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones].	0
CP028324.1\|AVR94727.1\|560501_561140_-\|cyclase/dehydrase	gnl\|CDD\|176875	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.17514e-34
CP028324.1\|AVR94720.1\|553701_554610_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176132	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mechanisms. In Escherichia coli and Salmonella enterica serovar Typhimurium, MetJ and MetR regulate the expression of methionine biosynthetic genes. The MetJ repressor negatively regulates the E. coli met genes, except for metH. Several of these genes are also under the positive control of MetR with homocysteine as a co-inducer. In Bacillus subtilis, the met genes are controlled by S-box termination-antitermination system. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.7483e-90

>CP028324.1|AVR94728.1|561227_563255_+|NADPH-dependent-2,4-dienoyl-CoA-reductase
MSQFSHLLAPLDLGFTTLRNRVVMGSMHTGLEDRFYNYGKLAAFYRERARGGVGLIVTGGISPNRQGWLLPFGGTLNFAGDVFNHRKVTRAVHEEGGKILLQILHAGRYGYQPFVVSASGKKSPISPFKPKALTESGIEATIRAYVRTARLAQKAGYDGIEVMGSEGYLLNQFLCARTNLRTDRWGGAIENRMRLPVEIVRRVRAAVGNDFIIMYRHSLLDLVEGGNTWEEVVTVARALEQAGVTILNTGIGWHEARVPTIVTSVPRAAFAQVAGRLRREVGIPVVASNRINMPAEAEDILARGDADMVSMARPFLADPEFVNKAAQGRVDEINTCIACNQACLDHTFSNQRASCLVNPRACRETELVFRKTAARRKVAVVGAGPAGLSAATVAAERGHDVTLFDAADSIGGQFKVAMQVPGKEEFAETIRYFGRKLQLTGVNVQLGRRVARDDLAGFDDVIVATGIKVRMPAIDGIGHPKVLSYLDVLQHKKPVGARVAIVGAGGIGFDMGEYLLHDTRHPLPLPLQTWTAEWGVDLHASTGGGLVPPATPAPVRQLYLLQRKTTKPGAGLGKTSGWVHRAVLARNGVVMLAGVTYKKIDDQGLHIEVGGEARLLAVDNVVICAGQDSQTELMPKEGEASNGGPRYHKIGGAALAAELDAKRAIREGAELAASL
>CP028324.1|AVR94727.1|560501_561140_-|cyclase/dehydrase
MKRFLLLLLLGCTAPALTLAQSHRIDVPKLQVSVKRITQDALQMYEVDANGTVQAPLPTVWRILTGYDRMEEFVPDLVSCRVLSRNGNEVIIEQFGTARFLFMSRSIHLIVRATEQPMSSIDIDLISGDMKHYESRWELVPVPETGGTRVIYTGRMMPNFYVPGILGTNIIRGDIERMMGAVLARLDKGGTSKVPGPSTELARNHVAGAIAP
>CP028324.1|AVR94726.1|560048_560501_+|hypothetical-protein
MHDYQRPPTLHRYGPRSELELALSQGQFVLRPENGFLTLSFSRAWSHDMFDHFGADCCLVIHNTEEFGERIHRAVQRTLPNWAGIDGAVEYGTRAALGAAFTMGAQDAAEQEWKFAWRPMHSQASMNPVVIRIGSLEQFAELRGSDWYPA
>CP028324.1|AVR99014.1|559584_560037_+|DUF2721-domain-containing-protein
MNIQLGDIGHIIQLAIAPVFLLTGVCTNLQVLINRLARIIDRSRVLEDRLDIAYNDSYLNELDVLYRRSHLINYAITLSTACGLFVCLVIALLFIGDTTNFTLEKYIAGLFVAAVFSLISSFGFLLREIFIASAAMRSQRHVRRAPKTNE
>CP028324.1|AVR94725.1|558545_559502_+|prolyl-aminopeptidase
MSDPSSYLFPPVAPLQSGTLAVDELHTIYWEEVGNPQGIPVLFLHGGPGAGISPQHRRFFDPRHYRVILFDQRGAGKSQPLGETRNNTTQLLIEDIERLRALFGIEQWLVFGGSWGSTLALAYGQAHPERCLGFVLRGIFLCTALEIDWFMDGAQWFHPEIHEEFAQGVPYEERGDLLQAYYKRIMDPDPEVYWPAVRAWSRFEGRRVFLMPQPEEPACDTIDLGLGRLEAHYMANLGFFEDDQLLRDVDRIAHLPAVIVQGRYDVICPPFSAWRLHKRWPGSKVVMVPDAGHAAMETGISRELVAATEQFRRQGRFG
>CP028324.1|AVR94724.1|557182_558493_+|serine-deaminase
MTTLPTGGLALSQLDEQLLQPGVKGLALTAPLRQHMIGVQRWNVLAGDTGFPVALLKTSSLRHNLDWMRAFCARHGALLAPHGKTTMSPQLFDAQLANGAWGITLATASQVQVAARFGVRRVLLANEVVAASDIRVLLQLLRDNPAFELFALADSLDGVQRLADAVTAAGLRRPLPLLVELGIAGKRAGCRTSDEAMAVARAIAAAPGLQLAGIEGYEGLLVTTDRAADLERVDAFLQAMVDLVRQCDAEGLFAGPQILLSAGGSSYFDRVAQCFAGVTGTSRPVLSIVRSGCYLTNDHGHYFELTRELDERAGGGVGLVPALEVWSTVLSRPEPTLAILGMGKRDASHDLGLPRALLRHRIGAAGPVALDDGWHIEKMNDQHAYLRLPENEVDELRVGDLVGCGISHPCTTFDKWSVLLLVEDDYRVTGAVNTFF
>CP028324.1|AVR94723.1|556381_557122_+|beta-ketoacyl-ACP-reductase
MARVALVTGGMGGLGEAIGIKLLALGYKVVTTYSPSNTKYQAWLDQMKEAGYQFSAYPCDVSDYDSAQTCVAAIERDIGPVDVLVNNAGITRDMTFKKMDKVNWDAVMRTNLDSVFNMTKPVTDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGVHGFTKALALEVARKGVTVNTISPGYIGTKMVTEIPQEVLDTKIIPQIPMGRLGKPDEVAGLVAYLASDEAAFVTGANIAINGGQHMS
>CP028324.1|AVR94722.1|555116_556295_+|acetyl-CoA-C-acyltransferase
MDDVVIVAAARTAVGKFGGSLAKIPATELGAHVIKGLMAQTGIDPNLISEVIMGQVLTAGVGQNPGRQALMKAGLPNSIPGFTINKVCGSGLKATHLAAQAIKCGDASIIIAGGQENMSASPHVLPNSRDGFRMGDAKLVDTMVVDGLFDVYNQYLMGITAENVAKKYEISRSQQDEFALQSQLKAETAQKEGKFKDEILPFEVPQKKGSFVFDTDEYIKTGATLEGLSGLRPAFDKEGSVTAGNASGINDGAAAVIMMSATQARELGLKPMARIKSYASSALDPAFMGMGPVSASRLALKKAGWTPDQLDLMEINEAFASQACAVNQEMGWDTSKINVNGGAIAIGHPIGASGCRILVTLLHEMVRRDAKKGLASLCIGGGMGVALTVERD
>CP028324.1|AVR94721.1|554666_555056_+|hypothetical-protein
MRYISRLKGPVMFTLPAELFYVTRTLLEGQLARSNALARTAFDSGASLFDVNANLAREQLAAATAASNQLLFVRDPQDLIGLAAVQSHQALNRVHAYGRGMAGVASDLNTRLGELGKDFAGTLSRTSIE
>CP028324.1|AVR94720.1|553701_554610_+|LysR-family-transcriptional-regulator
MLEIRHLRTLAALRSAGSLVRAAELLNLTQSALSHQVKLLEDRYGGPLFERKSVPIGFTAIGARLLRLADMMLPEIEQAERDVARLMQGDQGQLRVALECHTCFDWLMPVMDEFRARWPEVEIDLVSGFHSEPAELLRTGAADLVIGSDYSADYATFPLFRFEILTVMAQKHRLATHRRLHAADFEGETLITYPVPEQRIDLIREMLRPAGITFQRRTAELTVAILQLVASRRGLAALPNWAIKNYVDYDYVIARPLGEHGLWSDLYVSVPAALRQKAYVADFVKVIREQCAASLDGIKLLS
>CP028324.1|AVR94729.1|563483_565193_-|Kef-family-K(+)-transporter
MHHDVSLITTIAAALGLGLVFGFIANRLKLPALVGYLAAGILLGPTTPGFVADAHLAGQLAEIGVMLMMFGVGLHFSLDDLWEVRKVALPGAILQIGAATVMGMGLAHWWGWSLGGGLVFGLALSVASTVVLLRALEERGVLESFNGRIAVGWLVVEDLVTVLVLVLLPAVAPSLGGDATGADPDASLVKTLAITLGQVAIFVGFMLVVGRKLFPWILWQVARTGSRELFTLCVIAAAVGIAYVSTALFGISFALGAFFAGMVLRESELAHRAAQESLPLRDAFAVLFFVSVGMLFEPSILIEQPLRVLAVLAIIVFGKSLAAFLLVVLLRYPARSALMVSASLAQIGEFSFILAALGISLKLMPQEGQSLILAGAILSITLNPLIFAATGPLERWLGKNRMLAAKFDRPADPLAELPMTTAPTKLAGQVVLVGYGRVGRRIAETLNKHGIHYVVAEQNREKVDQLRHAGVAAVAGNAAEPAVLIQAHIAKARMLVIATPDTFHVRSMVEIARTLNPDIRIVVRTHNDEEAELLRSERMGKVYVGEEELANGMTDYVLATFKEPHSGGH
>CP028324.1|AVR94730.1|565304_566426_-|beta-ketoacyl-ACP-synthase-III
MKQAVISGTGLYTPPYSISNEELVDSFNAYVELFNAEHAAAIEAGTVTALEPSSAAFIEKASGIKSRYVMNKDGVLDPKRMAPHYPERDNEELSLQAEMCVAAAQQALDRAGRTAADIDMVLVACSNMQRAYPAMAVEVQQALGIEGFGFDMNVACSSATFGIQTAATAVQTGQARAVLVLNPEITSGHLDYRDRDSHFIFGDACTAIVVEAADTAVSKHQFKILDMKLKTSFSNNIRNNFGFLNRGDESGIGQPDKLFKQQGRKVFKDVCPMAAETIKNAIANAGLDLPQVNRYWLHQANLNMNQLIVRMILGRDATAEEAPVILDTYANTSSAGSIIAFHKHQDDLPQGAHGVICSFGAGYSIGSIVVQKL
>CP028324.1|AVR94731.1|566636_568067_-|peptidase-S41
MGKKLKNSGLVALGVVAGVAVSLQFSALAQRAEPALPLEELRQLADVYGLIKSDYVEQVDDKKLLTEAISGMVASLDPHSAYLDKKAYAELREGSQGKFVGLGIEIAQSDDGYIKIVSPIEDSPAYRAGIKAGDLITRLDQTPLKGLSLDESVKRMRGEPHSKVTLTVLRKDEPQPLTFNLVREEIHQKSVKGKIVEPGYGWLRVAQFQEPTVDDLAAKITELYRQDPNLKGLVLDLRNDPGGVLQGAIGVAAAFLPKDAPVVSTNGQLPDMKEIYYARPEYYSLRSDTDALARLPEAVKRVPLAVLVNTGSASASEIVAGALQDYKRATIIGSQTFGKGSVQTIRQLTADTALKLTTARYYTPHGRSIQAKGIVPDLNVNEYADGDGLNALRMREADLEKHLSNDREAEAAKDKRDELEEQMRILALEKKRKPLEYGTADDFQLRQALNHLKGQPVQLAKPESQIVQAGVPVKHK
>CP028324.1|AVR99015.1|568387_568939_+|hypothetical-protein
MQRSTRLLALAAAFCGSALATPVMDWRAPDLLMMAPDLKGTLKLNANQATLWNQTESRTRALLRERQSRQEQLQARALQALQANGVELRALAGALDGEDTTLLAENHQLREWWLTVNDALDDVQRQAVAVFLAEQLQRKPEGPGRGDGPPRGEAGGGGHGGHKGAMGGMGGGPGGINIGLGGR
>CP028324.1|AVR94732.1|569056_571267_+|TonB-dependent-receptor
MNQLTPFACAALLGLAGTALAQTDPATDKPTTTTTVKGADQVVPQVTITGGRQTEMDVRRNSTAAKQIYGREELDRNGDSNLGDVLKRLPGVTIGGRPGRGGDVRMRGLGSGYTQVLVNGERPPAGFSMESISPDQVERIEVMRGPVAEHSTRAIAGTINVVLREDYVQRDNQLKVSDSLESGRHSPELSITVPGKSGAFGYSLNGSIRQNRQHDEGRTHNVDTRDDGTVTKDQQVTDESSGTGKAIHLAPRLSYKFDNGDTINFQPFLMYNTRDSGSSSTLVQAAGSAAPEYNFAEQQSHNDSTFLRGFGNWLHKMDGNAKLDVKFGFGAGKMDSDSLRNQYDTAGTLLDRFTDTDQTRDRSVNMGGKYTRPLGAGHLLAAGWDLEASHREQTRVSLDKNGNAQFADSGDNLTADTRRVALFAQDEWDVTPQFGMYVGLRWEGIRTTSERSSGSVKNTSSVFSPLLHGVWRIPGSEKDQLRASLTKSYKSPNVQDLIAAPFLSRLNSATRPDRSGNPDLKPELATGLDLAYEHYIGRSGIVSAGGFIRDIDNLIRRQLTLRDTELGPRWLSTPENIGHARTSGIELEAKFKLNELITDAPDIDVRSNYSRFWSRVDGIPGPDNRLDQQAKQTANLGLDYRLKVVPLTVGGSYNWTPRIRTQTSTEQVVETGQKRALDVYALWKFDARTQLRIAASNALAEDAPGSNLVYANGLTSRADTVNPTFVVWSARLETKF
>CP028324.1|AVR94733.1|571303_573331_+|peptidase-M13
MKRHLISLSLIAAFAATAAHAADSAAISGIDTQYIDPSVRAQDDFFVHLNGKWLKTAEIPADKSSWGSFAKLRDDTLPQLRDIVEELQKKKGLQGDEQKIADLYTSYMDEAKLDQLGVKPLAGELARIAAIKDKKALPGLIAHLTRIGAPTPYAVRVSQDARESTRYAAYMAQSGLGLPDRDYYLKKDDAKLADALAKYEQHVAKVLTLAGAKDGAAQAKAIVALETALAEAQWTKVENRDPVKRYNKIAIDKLAELAPGYDWKAALAASGIAGKTDYVIVMQPSYLQGFDKLVASTDLATWKSYLTWQLLRDASPYLSKPFADAHFAFYGTVLTGVTEQPPRWKKGVGVVEAAIGEGMGKLYTAKHFPAERKARMEKLVQNLLLAYQQSIDTLDWMGPETKKEAQAKLAKFTPKIGYPDKWRDYSKLKMNAGDLLGNLRRAAEFDYARNVAKLGQPIDRSEWGMTPQTVNAYYRSTANEIVFPAAILQPPFFDARADDAVNYGAIGAVIGHEISHGFDDSGSQSDGDGNLRDWWTAQDRANFKAKTDALVKQYDAYSPLPGYNVNGKLTLGENIADNSGLAIAYKAYKLSLNGQPAPVIDNLTGEQRFYMGFGQVWRSKMREAQQIVQLKTDPHSPGQFRANGTVVNQPGFYEAFGVKEGDKLYVKPEQRVIIW
>CP028324.1|AVR94734.1|573453_575523_+|peptidase-M13
MKRHLLSALTLSLLAGVCGVAGAADKAPASKPGAGAMASGIAVEYIDPSVRAQDDFFVHTNGKWLKTTEIPADKSSWGSFAKLREDIQPQLRAIIERAAASAAAGKGDADQQRIGDFYASFMDEARVEQLGAAPIKDDLAKIAAITDKKALPQLIAQFNRYGVTAPMGFAIHQDNKDSTKYVADFFQSGLGLPDRDYYLKKDDTKLAEALAKYEQHVAKMLTLAGDAKAADNAKAIVGFETELAKIQWTKVELRDPVKAYNKYDIAKVGELMPGFDWNAYLAATGVQGKVSYVIVGQPTYFQALDKLLAATPLETLKAYAQWHTVREAAPYLSKQFVDTNFEFYGTVLSGVTENRPRWKRAVSATEAAVGESIGKIYVAEHFPPEHKARMEKLVNNLLVAFKQSINTLDWMTPATKKEAQGKLGKFMTKIGYPNKWLDYSTLTVKRDDLLGNVKRGTEFNYNKELNKLGKPIDRDEWLMTPQTVNAYYNPELNEIVFPASILQPPFFDPKADDAVNYGAIGGVIGHEISHGFDDQGAQYDGDGNLRDWWSAADHKNFKAKTGQLVAQYSAYSPLPGYNVNGELTLGENIGDNSGLAVAYKAYKLSLKGKKAPVIDGLTGDQRFYMGWSQVWRMKVREPALIQQIKTDPHAPGQFRANGTMRNQPGFYEAFKVKNGDKMYLPPKERVIIW
>CP028324.1|AVR94735.1|575814_576399_-|cytochrome-c5-family-protein
MSDAHHEHQSAIRTPKQLAAAVIGFFLVVILGIILLVQYVTQQRLPGAGSTAQTPEAIASRLKPVADEGFTLKDANGPKVLQTAEAVYTTTCQACHGAGVAGAPKVGDAGAWGARIAQGYDTIVKHAIEGIRAMPAKGGNPELDDVEVARAVVFMANQSGAKFKEPEVPAAPAAAAAGDAAAPAAAPAAEPPKG
>CP028324.1|AVR94736.1|577189_577858_+|DNA-binding-response-regulator
MEVPYFRKTLLVEDQGLTRQAMKTLLVQCDPRLEIDEARDFDSATALLAARQYDLMFLDYQLGAGNSGLDVLRWIAEHEIPVQVVMLSGQDDRDTVMECIRAGASGFISKASEDGDATFRAALNTILAGQIYLPNSALGKGGFSPQAPKRSTFGGVALSPRLTETLGYICQGLSNKAIARKMGVSDNTIKEYSGDLLEKFGVRRRTELIVEMARRGLVIPRN
>CP028324.1|AVR94737.1|577841_579854_-|hybrid-sensor-histidine-kinase/response-regulator
MLVSDPASNKRARPAWHALHWRCRRALRSLADTFALPLPFAAPQLETEFLRDHGRRFAPFRRAAALLALLMIVALAGWDYGHYVADAGFPLLTVLACRLVVSVGLTTLFIITLRPSFRDDRRAHATMFAGVGITSAGMLAICLITPDTISFTDYFMSIYLVMMYQYGFLHLRARPVLYSTLLLGVVVVTLQYAAPAWTPYSLMAPEEFGRAMFFFVNAAAIGVGICIKLEHTARSQFLQARELRSANTALQQHAAQLAAEKEANQIKANALIQLKEEQRNQALRASHENARFLASAAHDLRQPMFGLGLALEAMGQALARNDNAEAGRLSDLASRSARAMSTTFNGVLDLSRLEAGVVTPTLCDFDVADVLREVVADLTPYAASRGVELRCRRRTRRAAIVHSDRQMLCRILKNLVSNGIKYARREPGHPALVLVGAVGLHTRVRLDVVDNGIGIPPQQWQRVFEPFVQLDNPERDREKGLGLGLSIVNAMISLLPEHRLEFTSEVGRGTHFSLDVPNGTASEASTSKDEPDDASDVAGRYVVLVEDDRIVLAAMEALFTQWGMLVDTASDLPSLRALAQELERMPDLIITDYRLPNGATARDVLDIVLPAVARGELVPPVLVVSGEAEVARQALGASVDEVLSKPVQPERLKQAIARLAAERQRVNCVE

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Crispr_ID: CP028324_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_3

802285-802367

Orphan

Consensus_repeat	Method
GAAAAATCCGGGACTGTCCCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_3

>merge|CP028324|3|802285-802367|CRISPRCasFinder
GAAAAATCCGGGACTGTCCCGGATTTTTTTACGCCGGCGCGTGGGCTGGCGGTGAGATAGGAGAAATCCGGGACTGTCCCGGA

>CP028324|3|3|802285-802367|CRISPRCasFinder
GAAAAATCCGGGACTGTCCCGGA	TTTTTTTACGCCGGCGCGTGGGCTGGCGGTGAGATAG
GAGAAATCCGGGACTGTCCCGGA

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR94895.1\|808368_809052_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198298
CP028324.1\|AVR94887.1\|800969_801449_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099
CP028324.1\|AVR94891.1\|803127_805014_+\|ferrous-iron-transporter-B	unknown	unknown	gnl\|CDD\|223447
CP028324.1\|AVR94885.1\|799223_799835_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
CP028324.1\|AVR94890.1\|802853_803123_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
CP028324.1\|AVR94892.1\|805024_805300_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR94880.1\|795497_795707_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379154
CP028324.1\|AVR94882.1\|796409_796961_-\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|377274
CP028324.1\|AVR94897.1\|810345_811461_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
CP028324.1\|AVR94894.1\|805902_808197_-\|catecholate-siderophore-receptor-Fiu	unknown	unknown	gnl\|CDD\|182105
CP028324.1\|AVR99026.1\|809111_809885_+\|flap-endonuclease	unknown	unknown	gnl\|CDD\|181896
CP028324.1\|AVR94888.1\|801589_802270_+\|Fe2+-dependent-dioxygenase	unknown	unknown	gnl\|CDD\|235483
CP028324.1\|AVR94886.1\|799970_800936_+\|fructokinase	unknown	unknown	gnl\|CDD\|238572
CP028324.1\|AVR94896.1\|809922_810366_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381152
CP028324.1\|AVR94893.1\|805435_805816_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR94881.1\|795838_796399_-\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|225228
CP028324.1\|AVR94883.1\|796990_797530_-\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
CP028324.1\|AVR94884.1\|797687_799061_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
CP028324.1\|AVR94879.1\|794974_795487_-\|peptidase	unknown	unknown	gnl\|CDD\|367218
CP028324.1\|AVR94889.1\|802416_802638_-\|2Fe-2S-ferredoxin	unknown	unknown	gnl\|CDD\|381078

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR94895.1\|808368_809052_+\|glutathione-S-transferase	gnl\|CDD\|198298	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	5.17893e-55
CP028324.1\|AVR94887.1\|800969_801449_-\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	5.12943e-86
CP028324.1\|AVR94891.1\|803127_805014_+\|ferrous-iron-transporter-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
CP028324.1\|AVR94885.1\|799223_799835_+\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	3.93246e-52
CP028324.1\|AVR94890.1\|802853_803123_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	5.64987e-16
CP028324.1\|AVR94894.1\|805902_808197_-\|catecholate-siderophore-receptor-Fiu	gnl\|CDD\|182105	PRK09840, PRK09840, catecholate siderophore receptor Fiu; Provisional.	0
CP028324.1\|AVR94880.1\|795497_795707_-\|hypothetical-protein	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	0.00421577
CP028324.1\|AVR94882.1\|796409_796961_-\|polyisoprenoid-binding-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	5.62186e-38
CP028324.1\|AVR94897.1\|810345_811461_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
CP028324.1\|AVR99026.1\|809111_809885_+\|flap-endonuclease	gnl\|CDD\|181896	PRK09482, PRK09482, flap endonuclease-like protein; Provisional.	8.14779e-69
CP028324.1\|AVR94888.1\|801589_802270_+\|Fe2+-dependent-dioxygenase	gnl\|CDD\|235483	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional.	3.51452e-137
CP028324.1\|AVR94886.1\|799970_800936_+\|fructokinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	1.91796e-51
CP028324.1\|AVR94896.1\|809922_810366_+\|hypothetical-protein	gnl\|CDD\|381152	cd19925, REC_citrate_TCS, phosphoacceptor receiver (REC) domain of citrate family two-component system response regulators. This family includes Lactobacillus paracasei MaeR, Escherichia coli DcuR and DpiA, Klebsiella pneumoniae CitB, as well as Bacillus DctR, MalR, and CitT. These are all response regulators of two-component systems (TCSs) from the citrate family, and are involved in the transcriptional regulation of genes associated with L-malate catabolism (MaeRK), citrate-specific fermentation (DpiAB, CitAB), plasmid inheritance (DpiAB), anaerobic fumarate respiratory system (DcuRS), and malate transport/utilization (MalKR). REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.57617e-08
CP028324.1\|AVR94881.1\|795838_796399_-\|polyisoprenoid-binding-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	7.56026e-50
CP028324.1\|AVR94883.1\|796990_797530_-\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	6.14173e-59
CP028324.1\|AVR94884.1\|797687_799061_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
CP028324.1\|AVR94879.1\|794974_795487_-\|peptidase	gnl\|CDD\|367218	pfam02861, Clp_N, Clp amino terminal domain, pathogenicity island component. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site. In many bacterial species, including E.coli, this region represents the N-terminus of one of the key components of the pathogenicity island complex that injects toxin from one bacterium into another.	1.49259e-06
CP028324.1\|AVR94889.1\|802416_802638_-\|2Fe-2S-ferredoxin	gnl\|CDD\|381078	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain. This family includes Escherichia coli and Pseudomonas aeruginosa bacterioferritin-associated ferredoxin BFD which binds an [2Fe-2S] cluster and appears to interact with bacterioferritin (E. coli BFR/YheA and P. aeruginosa BfrB), a dynamic regulator of intracellular iron levels. It has been suggested that BFD and bacterioferritin form an electron transfer complex which may participate in the iron storage or iron immobilization functions of bacterioferritin. For Pseudomonas aeruginosa, it has been shown that mobilization of Fe3+ stored in BfrB requires interaction with BFD, which transfers electrons to reduce Fe3+ in the internal cavity of BfrB for subsequent release of Fe2+. The stability of BFD may be aided by an anion-binding site found within this domain. In addition to BFD, the BFD-like [2Fe-2S]-binding domain is found in a variety of proteins such as the large subunit of NADH-dependent nitrite reductase and the Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.	1.34024e-16

>CP028324.1|AVR94888.1|801589_802270_+|Fe2+-dependent-dioxygenase
MMLHIPGVLTPDQVRQLRSRMTLDAWIDGRASVGTQGAQVKRNRQLAEGMPLAQELGSIIVRALTANPLFFAAALPLRILPPYFNSYAGGEHYGLHIDGAIRTPANGGPTLRADVSTTVFLSDPDEYEGGELVVMDAYGAHEVKLPAGDAIVYPSSSVHRVNPVTDGERVASFLWTQSMVRDDGQRTMLFELDQNIQKLRAQVGDNEATVGLTGHYHNLLRMWADT
>CP028324.1|AVR94887.1|800969_801449_-|bacterioferritin
MKGDKDVIRLLNAQLTNELTAINQYFLHARMYRHWGFDKIAKKEYEESIGEMKHADKLIDRILMLDGLPNLQALHKLLIGENTPEMLEADLKLERGAHVTVKEGIAQAEKVGDYVSRDLLLEILEDTEEHIDWLETQLDLIGKVGIQNYLQSQMSTDHD
>CP028324.1|AVR94886.1|799970_800936_+|fructokinase
MEHAVTVFGEALVDDFSTRQVVGGAPFNLARHLAGFGLPVTMITRIGDDANGRLVRDEFARFCLREGGLQTGAGEATGSVHVEVGADGSHRFTIVPDQAYDHIDSAQALAACQATQPSIFCFGTLAQRDPRSRAALHAVLEQTQAVRFLDLNLRAGFVDETIVFDSLQQADIVKVNEDELQQLFKWYCHTCPDTVNMECISVDTECRAMMHNFSLSALVVTMGARGALYLSADGAHVADHGTAMDGTFVDAVGAGDAFNAVFLLGRLRGWTMEQTLARANAFAASTCGHAGAVPQDLACYGRWLEAWRRSATSDELFGAPG
>CP028324.1|AVR94885.1|799223_799835_+|glutathione-S-transferase
MKLIGSLASPYVRKVRVVLAEKKLDYQIELENVWVPETTIHELNPLGKVPCLVMEDGYVMYDSRVIVEYLDTLTPVCKLLPPNGRERADIKNWEALADGIIDAAVVVRLERTQRPPELQSDAVCERQMMKVTRGLASLSARLGESNWCVGNHYSLADVAVGCALGWLTFRFPEIDWRGAHPNLGRLLDKLMERPSFRDSVPQA
>CP028324.1|AVR94884.1|797687_799061_-|adenylosuccinate-lyase
MTTPYSTLSALSPLDGRYAAKTDKLRPILSEAGFMHHRVKVEIAWLQALSQAGFAEIKPFSADATALLDKLANDFTESDAARIKEIEAVTNHDVKAVEYWLKEQVKDVPELVAASEFIHFACTSEDINNTSHGMMLKAARDGVMLPALQGLVAKLTEIAHANADVPMLSRTHGQTASPTTLGKEFANVVARLQRAVARIAQVEILGKMNGAVGNYNAHLSAYPSFDWPAFSKNVIEQRLGLVFNPYTIQIEPHDYMAELFDAFARANTILLDLNRDIWTYVSLGYFKQKLKAGEIGSSTMPHKVNPIDFENSEGNLGLANAVLKHLSEKLPVSRMQRDLTDSTVLRNIGVGFGYTLLAYDSCLRGLNKLEVNPARLAADLDASWEVLAEPVQTVMRRYGIENPYEQLKELTRGKGITKEALQEFIGKLAIPQDAKDLLLAMTPANYTGIATQLAKAI
>CP028324.1|AVR94883.1|796990_797530_-|cytochrome-b
MTTSPRYTHTAMLLHWLIAVLIIGAFTMGLVMTDIPGFTPTKLKYYSWHKWAGVTVLLLAALRLLWRRANRPPPHPAGMPAWQVRAADVTHVLLYVLMFAVPLSGYLYTTAAGVPVVYFGLFQIPAAFAADPALKALLKPVHYWLNMVLAALVLLHVAGALKHHFVDRDDVLKRMLPRP
>CP028324.1|AVR94882.1|796409_796961_-|polyisoprenoid-binding-protein
MKNTQRVLLASLLGVSLAAGAAVLKTDPAKSSVSAVFKQMNVPVESKFTKYRVTIDYNAQAVDSSKASVEVDTASLDMGDPEYNKEVAKKEWFNSAQFPKATFVSSSIKSAGAGKLTVAGKLTIKGKAADVAFPVTVKTEGGKQVFDGALPIKRLAFNIGEGEWQDTGMVADEVTIKFHVVGQ
>CP028324.1|AVR94881.1|795838_796399_-|polyisoprenoid-binding-protein
MKTTLLIALLALAAVANATGYNIDPNHTYPSFEADHKGMSLWRGKFNKTSGNISMDRAGRSGSMEIIIDTASIDFGHDKMNAHAMGEDIFNVAKFPTAIYRGKSFTFEGDKLVAVDGELTLLGVTKPLQLKVNRFKCVQDPRLKREVCGADASAEFKRTDFGLNYGIPAFAPEVKLAIQVEAIAAQ
>CP028324.1|AVR94880.1|795497_795707_-|hypothetical-protein
MLELHSLPHPDDPAEALAAVVALRLAADQLERKAVAAAIAQGWSWSQVADALGVSKQAAHKRLAPLIHP
>CP028324.1|AVR94879.1|794974_795487_-|peptidase
MLQQIKRKLDDMRTIKTLAEAAERHANAAGEREPGPEHFLLAAFDLPDGLARRAFARLGVDPAGIQQAIAAQHGAALASTGADPALLADAAPLPPAKGPYRAKGSMQGVMQQLAAWPRATPTEPLTGAHVLAVIACSAQGTAARTLRALGLDGERVGAAARAEIAGYRAV
>CP028324.1|AVR94889.1|802416_802638_-|2Fe-2S-ferredoxin
MIVCVCNNISDREIRQAIDLGINSMDELREALGVATCCGNCLSYAVEVLDEHVAAKAEAPINETVLKRPTFTN
>CP028324.1|AVR94890.1|802853_803123_+|ferrous-iron-transport-protein-A
MTLAPSLINLDALAAGKSGTVVHVAPASGDGSDSADLARRLMELGFVPGEKIRMLKRGMPGGEPLAIKVGNATFALRRYEAALVAVQPE
>CP028324.1|AVR94891.1|803127_805014_+|ferrous-iron-transporter-B
MGVTEKVAQAVAHAPMIALLGNPNCGKTALFNRLTGSRQKVANYAGVTIERKEGHFTSPQGHPYRVLDLPGAYSLSAHTPDEAITRDVVGGLRANDGSPDVVVCVVDATNLRLNLRLVLEIQRLGLPMVLCLNMVDVAKKRGIEIDTAKLAQELHMTVVETVAVQSGGEKGLLRALDEMWPIVPVKPQPLAAIDTVSVEDTQREVRRILAAVTKNYHNTDELSEKIDNVVLHPVAGPVILAVLMFLIFQAVFTWAAVPMDMISAGVEGVGQMLSTHMAEGVLRSLLVEGIIGGVGSVLVFLPQILILFFFILILEDCGYLPRAAFLLDRLMGGVGLSGRAFIPLLSSFACAIPGVMAARTIQNPRDRLVTIMIAPLMTCSARLPVYALVIAAFIPEREVWGVSLQGLILFCLYFAGIISAMGVAWFMKRTAGSKAKQALMMELPSYHWPNLRNLAIGLWERAKIFLMRVGTVILTLMVLLWALSSFPGAPANATHPPIYYSIAGMLGRALEVIFAPIGFGWEICIALVPGMAAREVAVGALGTVYALSQTGDELATSLTPVLASSWSMATALSLLAWYVFAPQCLSTLSVVRRETGHVKYAFMMAGYMFALAYGASFITYHVARSLGA
>CP028324.1|AVR94892.1|805024_805300_+|hypothetical-protein
MWQELIVAVIVAACAFHAATKYLPAAWRRQIVYALARRGFNQDKLAKLFKTQSSCGDGCGSCGSCETPAAAPDAPKDTGVARRVIQLRVQR
>CP028324.1|AVR94893.1|805435_805816_-|hypothetical-protein
MKSRTRKRLALYGAELLLVAMLMAALAAWPGVKPLELSIGALLLHLTTGVGMWLFDWRFAGLPEQDRLFGVRMVSLLKGSIAVGVLLMLSWVVVPSAAVWVTGVMMVVLAVEELVTSNRSPSPGNP
>CP028324.1|AVR94894.1|805902_808197_-|catecholate-siderophore-receptor-Fiu
MAHIKSRKLAPSRLQMSTVLATLLLPVAAQAGDGAPAADDTTSPPIQEVVVGGTKGNDFKADRAGSMKYTEVLVNTPQTITVITKELIEQQGAQTLTEALRNTPGVGAFFLGENGNTNTGDAIFMRGFDSSSSIYVDGVRDVGSISRDVFNVEQIDVLKGPAGTDSGRGNPTGSVNMNSKQAQLRDSQSASVKFGSGRQKRATADLNRVLNEESGTAFRLNLVAQDNGNPARDVVENKRWGVAPTLAFGLNGKTRLHLSYLHVKQNNIPDGGVPTIGLPGYKSPTPDRPYLSNAPMVDPRGFYGVLTDHDDVTADMATVRIEHDFSPTLKLQNTARYGKTKQDYLLSAFMGSATNLLSPNPADLATWTLARGNRTVKDQDNKILTNQTVLTAEFDTGTLKHTMVAGLEFINEKQTTVGYTNLGNLDPVQLYYPNPAIAARDLNPVRSGAGTSGSTDTQALYVFDTVKLDERWMVHAGVRADHYNTDYFGTTLVTTTANGKTTTTLNPTSLTSKDTLVNGKLSLLFKPTPDSSVYATVASSQQPPGGNAFSLSASANSAQNPNYDPQKTTTKEIGTKWEFMKGKLAVNGAIYDTTVRNEIEQDPTDSTKYYQTGKKNVKGVEISVTGEVARNWLVSAGYTHMKTEVESGKVVTASGINQLSYTPKDAFTSWTSYTLPFGLKIGGGARYQGKLLRGTDGAVGTPAYAEGYWVADAMAEYAINKNIDLRLNVYNLADKEYVAAINKSGYRYTPGQPRSASVTATFRF
>CP028324.1|AVR94895.1|808368_809052_+|glutathione-S-transferase
MIVVHHLNNSRSQRVLWLLEELGLPYEVVRYQRDAKTMLAPPALRAVHPLGKSPVIVDGDCTVAESGAIIEYLIDKYDGQDGRTPLVPPRGTPEKRRWTYFLHYAEGSMMAPLLMKLIFDRVENGPAPFFVKPIARGIAQKVKGSYIEPQINQHLAYLEAELGKHAWFAGDSFSAADIQMSFPLEAAAARGGLDARFPKLKAFLERIHARPAYQRALEQGGPYELLR
>CP028324.1|AVR99026.1|809111_809885_+|flap-endonuclease
MGRLLAIDGLNIVRRVYEASPEPDSDLKAEIALRHALNSFRTLINGHEPTHVLPAFDFGGSTWRHALYGGYREGRAPMPAPLRAALPGFYGTLEKLGLRPVSLPEVEADDVIGTVVMRWLNENRGEAVVASTDKDLHCLIAHGARVWDHFKSEWHDHAWVENKWGVPPAQLPDLLALMGDATDSVPGVSKVGLKTAAKLLRTYGTLDGIMAGAGILKDTVGEALRKEREMLYLSRQLVQLKTDVRVGVSWNMLVWNA
>CP028324.1|AVR94896.1|809922_810366_+|hypothetical-protein
MLKAVIIDSSAVARGLLQTVLQDGSYDVVGQAHTCATAAVLLLKHNPQIICIARDVLEADVKGAEEMRRTYPKSLMFMVSSEFDAATVQKAHAMGINGFIVKPFNADTVLKTIRSTVIQMVNRQRKALAEAQAAQNPPAQPSAGDEA
>CP028324.1|AVR94897.1|810345_811461_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSKKKVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEYCSTRQDWIDAASVADVIGVDIEAVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMHLGADLIATGHYARVRQNEANGRFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTEVRRIAEQLKLPNAAKKDSTGICFIGERPFREFLNRYLSYKPGPMKTPDGKVVGEHVGLSFYTLGQRKGIGIGGVKTYQNADGSSDAWYVARKDVANNTLWVVQGHDHPWLLSSTLVADQASWIAGVPPEAGRIAAKTRYRQADVPCDVAPQGENNFALGFVDAQWAVTPGQSAVLYDGDVCLGGGIIDSSGFVAG

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Crispr_ID: CP028324_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_4

959219-959308

Orphan

Consensus_repeat	Method
GGTGTCAGTCACCGCGGTGGGACACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_4

>merge|CP028324|4|959219-959308|CRISPRCasFinder
GGTGTCAGTCACCGCGGTGGGACACGAGCTCTACATTGCGTCGGTTGAGGCCGTGTCCCATTTCGGTGTCAGTCACCGCAGTGGGACACG

>CP028324|4|4|959219-959308|CRISPRCasFinder
GGTGTCAGTCACCGCGGTGGGACACG	AGCTCTACATTGCGTCGGTTGAGGCCGTGTCCCATTTC
GGTGTCAGTCACCGCAGTGGGACACG

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR95016.1\|961049_962534_+\|aldehyde-dehydrogenase-PuuC	unknown	unknown	gnl\|CDD\|143430
CP028324.1\|AVR95012.1\|953426_954797_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
CP028324.1\|AVR95022.1\|967880_968228_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377316
CP028324.1\|AVR95007.1\|948156_948864_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP028324.1\|AVR95018.1\|965113_965356_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR95006.1\|946903_948139_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
CP028324.1\|AVR95010.1\|951240_952392_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
CP028324.1\|AVR95019.1\|965435_965891_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP028324.1\|AVR95011.1\|952556_953321_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	unknown	unknown	gnl\|CDD\|336781
CP028324.1\|AVR99036.1\|959336_960887_-\|catalase	unknown	unknown	gnl\|CDD\|163710
CP028324.1\|AVR95020.1\|965972_966914_+\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176203
CP028324.1\|AVR95013.1\|954902_956312_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
CP028324.1\|AVR95015.1\|958002_959109_-\|glucose-fructose-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
CP028324.1\|AVR99037.1\|968228_968705_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269
CP028324.1\|AVR95008.1\|948856_950353_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236531
CP028324.1\|AVR95021.1\|966930_967782_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP028324.1\|AVR95017.1\|962544_965115_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028324.1\|AVR95014.1\|956391_957855_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271368
CP028324.1\|AVR95023.1\|968713_970237_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
CP028324.1\|AVR95009.1\|950424_951213_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376806

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR95016.1\|961049_962534_+\|aldehyde-dehydrogenase-PuuC	gnl\|CDD\|143430	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.	0
CP028324.1\|AVR95012.1\|953426_954797_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	8.90551e-157
CP028324.1\|AVR95022.1\|967880_968228_-\|hypothetical-protein	gnl\|CDD\|377316	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486). This family contains several proteins of uncharacterized function. The family is represented in the Transport classification database as 2.A.7.34, though the exact nature of what is transported is not known.	1.20992e-60
CP028324.1\|AVR95007.1\|948156_948864_+\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.49477e-78
CP028324.1\|AVR95006.1\|946903_948139_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	5.24389e-31
CP028324.1\|AVR95010.1\|951240_952392_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.92493e-69
CP028324.1\|AVR95019.1\|965435_965891_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.70333e-16
CP028324.1\|AVR95011.1\|952556_953321_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	2.42727e-85
CP028324.1\|AVR99036.1\|959336_960887_-\|catalase	gnl\|CDD\|163710	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.	0
CP028324.1\|AVR95020.1\|965972_966914_+\|quinone-oxidoreductase	gnl\|CDD\|176203	cd08241, QOR1, Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.80405e-31
CP028324.1\|AVR95013.1\|954902_956312_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
CP028324.1\|AVR95015.1\|958002_959109_-\|glucose-fructose-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.78478e-77
CP028324.1\|AVR99037.1\|968228_968705_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	2.55105e-56
CP028324.1\|AVR95008.1\|948856_950353_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	4.20158e-51
CP028324.1\|AVR95021.1\|966930_967782_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	3.92588e-159
CP028324.1\|AVR95017.1\|962544_965115_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.23287e-38
CP028324.1\|AVR95014.1\|956391_957855_-\|sodium:solute-symporter	gnl\|CDD\|271368	cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain. Na+/choline co-transport by CHT is Cl- dependent. Human CHT (also called CHT1) is encoded by the SLC5A7 gene, and is expressed in the central nervous system. hCHT1-mediated choline uptake may be the rate-limiting step in acetylcholine synthesis, and essential for cholinergic transmission. Changes in this choline uptake in cortical neurons may contribute to Alzheimer's dementia. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	3.60073e-171
CP028324.1\|AVR95023.1\|968713_970237_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	2.11492e-153
CP028324.1\|AVR95009.1\|950424_951213_-\|hypothetical-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	7.09702e-13

>CP028324.1|AVR95015.1|958002_959109_-|glucose-fructose-oxidoreductase
MIDLDRRGVILAGGGILAAATMGPAVWAAPQRKLGYAIVGLGSYGLGVIIPQFKNCRDSRLVALVSGDAAKARRVAAEYSVPERNLYDYKNFDSIRDNPDIDIVYVCLPVSMHAEYTIRAAQAGKHVLCEKPMALSSAECEAMIAACAKAGRKLMIGYRCHFEPTNLEAIRRARAGEIGKLRYFRSEHGFVQGNANGWRLRKAMSGGGSLMDMGIYALQAARYMTGEEPIAVYATERTDRSDPRFREVEDMIAFDLEFPSGVLASCMSMYSANQNHILLMGDKGRIELEPGTGYAGNRLWVGQGRGNEITPPPGPGATQWAGQLDHLAQCVLTNRTPIVPGEEGLRDLRIIEAIYQSAREGRRIALRA
>CP028324.1|AVR95014.1|956391_957855_-|sodium:solute-symporter
MNTTLITFVVLYLLGTLALGMWAGRRIKNTADFAVAGRSLPLIMVITTTFATWFGAETVMGVPAKFVQGGLNAVIEDPFGAGTCLILVGLFFATKLYKLNLLTIGDYYRQRYGRGIEVFCSVTIILSYLGWVAAQITALGLVFSVLTNGAMAPATGMVIGTLAVLIYVVVGGFLAVAITDFIQMIVLVVGMTIIAFFAADLAGGADKVLAMAQQADLWRLLPEPKLNDIIFFFGAAITMMFGSIPQQDVFQRVMSAKDAPTARSGAVIGGASYILFGFVPMFIVAAAVVVMGDHAMDIAKNDYQRLLPTFVMTKMPLVMQILFFGALLSAIKSTSSATLLAPSTSFVENILKNLRPGMSDRQQLLAMRVTIVVFAALVLSYAIAMQGTSIYELVSSAYQVTLVGAFVPLVMGLYWKRATTQGAILSIGAGIVVWVVFFPQISDLGTHFPGQLAGLLAAFAGMFIGSLAPQVLKNRHDTTAHLHQANA
>CP028324.1|AVR95013.1|954902_956312_+|aspartate-aminotransferase-family-protein
MTTTPIVPVLPDTQALQRLDAAHFLHPFTDHKALAEKGVRVMVRGDGIYLWDSEGRKVLDAMSGLWCVNVGYGRTSITQAVARQMDTLPFYNSFFNTTTIPAVQLAAKLARIAPDGFRHVFFTGSGSEANDTNVRMVRRYWDLQGQPERTVIISRHNAYHGSTMAGASLGGMSGMHVQGGLPIPGIVHINQPSYADHGMGMTPEEFGVHAASWLEERIKELGPDKVAAFIGEPIQGAGGVIIPPVTYWPEIRRICDKYDILLIADEVITGFGRLGKWFASEQFGIGPDLITFAKGVTSGYVPLGGVLVSDKVAQVLVAGGDFNHGFTYSGHPVACAAALENIRIIEEEKLLEQVAHDTAPYLKARFASLAAHPLVGTAESCGFVAGLNLVRRKAGNVHYQVKFDPSLGVGMICRGHMFDNGVIMRAVGDRMIIAPPLVMTRAQIDEMVGLIRLCLDRTLEDLERRGWMG
>CP028324.1|AVR95012.1|953426_954797_+|glutamine-synthetase
MAIRENFTYTDMDEWLNEKRVTEIECLVPDLTGVARGKILPRVKFTEDRGMRIPEAVLGMTVTGNSPVDDPAYDRAISRTDRDMILKADPTTITMVPWATDPTAQVIHDCYFADGRLVDFAPRSVLRRVLKLYADKGWKPVVAPELEFYLTAKISDPDLPLKAPVGRSGRAETSRQVYSIDAVNEFDPLFEDIYDYCDMMGLDVDTLIHEIGAGQMEINFLHGEPLGLADKVFFFKRTLREAALKHEMYATFMAKPMAGEPGSAMHIHQSVVDAETGWNIFSNQDGSPSPLFKQYIGGLQRYMPAALAIVAPYVNSYRRLVRHTAAPINIQWGMDNRTVGFRVPESGVQDRRVENRIIGSDANPYLALAVTLACGYLGMTEQLEPTPITTGSAYEMEYELPQGLPEALQRLRAEDKLREVLGERFIDVYAAIKDLEHQEFMTVISPWEREHLLLHV
>CP028324.1|AVR95011.1|952556_953321_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase
MRRPIVLVPACTRQIGHFPNHAAQNKYVNAVALGAQCMPLILPALAELTDMEAVLAVADGVMLTGSASNVHSDLYGQPIRNPALPLDAARDATTLPLIRAAIKRGIPLLGICRGFQEINVALGGTLHQAVQELPGMMDHRDREDDSLDVQYGPAHPIRLTPGGKFAQMLGNPEEIVVNSLHGQGVDVLAPGLTVEAVAHDGLVEAYTVGAAQGFTLAVQWHPEWRITENPDSMKMFLAFGNACREYQAKRPERG
>CP028324.1|AVR95010.1|951240_952392_-|MFS-transporter
MKNLPWRDFSALVISIGIVGLGLGATMPLTALALDLRGAGTQVIGLVTAASALGILGVAPFVTGWVARFGPRRTMMGGVWAAAGVTAAMQLTDHVWLWCLLRVVFGAALGVLFTIGEAWVNRIAPDASRGRVVALYTTSFTLFQLAGPALVALLDGRLAWPFAACAALFVAALPGLALLNGTQLPAEEETHARWQDVLPRMPMIALGAAFFALFDTLILALLPVYAMRQGIATTLALVSATVVLVGDTALQFAMGALADRFGRSKVHVGCGVAVCLLLPLLPLAAAIPWLWWTVLLALGAAAGAIYMLALVACGERFDGAALTTASAIVNASWGIASAAGPLATGALMQGVGIHALPAVLFVVCAVFLGSAWWEWRGGTAGKL
>CP028324.1|AVR95009.1|950424_951213_-|hypothetical-protein
MLAAVPQGEAAPGRFRHHFEVICMLNILLAGYLLVVAPAISLWRSRHQRGNKPEASLASRYWSMSWKVLVLLTLLWLGAREAGYTATQLGFDMPVSRAGTWGLVFAPLLLGGIALASVISERRQTPEGRIELERKALASPFPWPRTRMEVLGFAVSITLMSAAWEILYRGFLLLLLTPHIGLPMAIVASALAYGLAHGYENPQQLLGSIVAAFIFTLAYALTHSLWWLIAIHAGLPLSALPAAMRALRRRAARQSDAMRQEA
>CP028324.1|AVR95008.1|948856_950353_+|two-component-sensor-histidine-kinase
MPRLLDWLRWPRLPRPHLPRLLPYSLQGRLILLMAVGVLLTQLAGNVIWAAQRRAEARDEARTAAQHLAHSASSAVRFFLSLPPNYRPLIIQQFREMGGTRFLVNINRTPVPVRALAGQELTDAALAQLRATLKEDLPNTPDLRIAFAWPERLAVDDDGTMLADLPETWTQHILLARPAPVLLIQVELDPGHWLYLATLMPNPYFLESGNPLTHDRLLLQALSLAAVLLVTVLVVRWITRPLAALSEAATAFGKGENPPALPETGSREFVTTARAFQDMRERIQRYMEDRERLFVSISHDLRTPIMRLKLRTELLDEDELRNEFHDDIDELDMMVKGALQTVKDSDIHENATEVRLDALLGRMVRDAQLAGHEVTFVPSGLTVTAKPLALKRAIGNLLNNGLHYGERVELAVRETDHNIEIVVRDHGPGVPEEALASLAQPYVRLEHGRNQNGSGMGLGLSIARGIVQAHGGELVLGNAADGGFQATIVLPGGVFSPG
>CP028324.1|AVR95007.1|948156_948864_+|DNA-binding-response-regulator
MRRILIVDDDQKTRILLKTYLEKNQYAVDLAHDGATFQAEFNRHVDELSMVILDVMLPDTDGFALCRAVRQRSNVPIIMLTASSDETDRVVGLELGADDYISKPYSPRELLARIKAIHRRTGVDNAAAPRYYHFEGFTLDTVARTVTGPEGPVPLTGLDFQLLKYFVEHAGDILDRSVLCEGTRGRDAGPMDRFLDVQISRLRLRLNDGGGSPKLIKTVRGVGYVFSADVTASHA
>CP028324.1|AVR95006.1|946903_948139_+|carbohydrate-ABC-transporter-substrate-binding-protein
MAALCIAACACTAVPARTQTLQVLHWWKSASERKAVDLVAQRLGEQQVGWHDSMVPSGSGVGAGIVLRSRMLAKDAPEVAQLNGSVIRDWARLHLLLELDTVAAAGNWDKLLLPAVASTIEYDGHVYAAPLGIHRINTLFYNRKVLQRLGLPVPATWSEFEQVAAKLQRAGIVPLAQSSEPWQVTTLFETMVLAEGVDLYRGLFQRRDPAAYSDPRLAAALLRLRAIKRWMGRPIQERKWADGVQGVADGRAAMMVMGDWAKGELLERGLAVDVDFGCAAAPGTARYHLYNVDTLSMLGTRPEARPAQEKLAALALSPAVQADYNRIKGSIPVLRQPAFGKMDACARASWTLFNSGAAAQVPSLVHRMATDEMVRDAIVTEVHRFFLDDGIPVADTQRRLGTIARTFIKTK
>CP028324.1|AVR99036.1|959336_960887_-|catalase
MSNLLASRPGRAVLCGLVVLSGLAAFATGAHAQTLTKDNGAPVGDNQNSQTAGPNGPTLLQDVHLVQKLQRFDRERIPERVVHATGTGAHGTFTATDDLSDLSKAKLFARDTVTPVFVRFSTVIPGRSGTETTRDPRGFAVKFYTQEGNFDMVGNNLPIFFIRDAIKFPDMIHALKPDPVTNVQEPERVFDFFSHIPEATHMLTRVYSNLGTPASYREMNGSSVHALKLVNARGEYVYGKFTWKSRQGERNLRPQDIPVVQGKSTSHATVDLYDAIKAGKFPAWDLTVQIIKPQDLDKFAFDPLDATKVWTGVPERKVGTLVLNKVPDNFFESTEQVAMAPGNLVPGIEASEDRMLQGRLFSYIDTQHHRLGANFQSLPINRPLVPVVNNNIDGAANTSGRKGSVNYEPSRLAQVKEDPNARASALPLTGTTQQQRIAKTLNFQQAGEFYRALPAQERDDLIVNLAGDLKRVKNQDSLYTMLSYFWKADADYGKRLVKAVGADSGKVATLAAGLKE
>CP028324.1|AVR95016.1|961049_962534_+|aldehyde-dehydrogenase-PuuC
MTSPTWHDRARDLQIDGRAFIAGQRTWARGERQFDNHSPIDGRLLGAVARCDAADVDLAVAAARAAFDDGRWANFAPAKRKRILIKFADLMQQHAAELALLETLDMGKPIKYSQIVDVAGAANCIRWYGEAIDKVYGEIAPAPANSLALITREPVGVVGAIVPWNYPMLMASWKIAPALAAGNSVVLKPSEKSPLTALRLADLALQAGIPPGVFNVLPGFGNEAGSALALHMDVDCIAFTGSTRVGKQIMQMAGQSNLKRAWTELGGKSANIVCADCPDLDAAVAASVGSIFFNQGESCNAPSRLFVEESIRERFIEKALALVPNFAPGDPLDERTVMGAIVDDIQLNTVMGYIEQGKAAGAQLVAGGERVRLDTGGYYVAPTIFDQVSPDMTIAREEIFGPVLSVLGFTDVREAVRQANASPYGLHAAVWTSDLSKAIQTSRALRAGTVHVNQYDNDDITVPFGGYKQSGNGRDKSLHAFDKYTELKTTWIQV
>CP028324.1|AVR95017.1|962544_965115_-|TonB-dependent-receptor
MQQPLHRQLVLAIAAALPLLAAAQDSAPVDRVVITGSNIRTTQKEGASAVQVIGAKEIAASGKASIADVIRSIAANSGNSYNEQYTGSFSAGTAGLSLRGIGQKNTLILVNGKRVSPYATAQDLQEVFVDLNSLPMAAVQRIEVLKDGASSVYGSDAVAGVVNIILYKEFAGVDVTGQYGGSTEGTGQREKSAALQTGFGTLDGDGYSVVFSVDAQQRDTLNQTDVAWMRGSDFRGNPSGTLAWTPTNYVNGNPTQLLGGVQGPLQLQPYDAITPGKSGQVLAFNPAQYRTLIPGIKRVHASLRGTVKLNDNHEAYADVLYGHSRADQIFGAPLTVGSGLRAWNNAKQQLDNIPVVLPVGHPNNPGSTPLPINATLFDLGARMKQDKVDFFRVLAGAKGNVAGWDYDASIGQSGSKLEETVQNFVNRYEFEKVLADGSYNFVNQAANSEAVRNRLRLSTLRPAEAKLTTVDFSATRELLQLPAGPLGFAAGAQWRREEMDSQTSTAVLSGTELRPAINIINGTRKVAALFAEFNVPVLKDLSLNVAGRADHYDDFGSAFSPKASVRWQAAQWLLLRGTASRGFRAPSLPEITNSTSVSYGNVIDPRDPLTPTQARGVTNLTIANPDLKPERSNNLNFGIVLAPSSRTSVGIDYYHIRTKGVIDTESADNIIANEATAPNKVVRDAQGRILTLYRQYANQGDRVVSGLDLDLRHTLPLAAWGKLTFNGQLSRVLKFEAPLAVGEPLTDGAGNNWFGSIPTWRGVTSATWDIGAFTNTLIWNYVDGYDQTSKPGERVKPVGTLDATVAWKATPAATVSFIVQNLTDKRPSWDSSTTFFDFTQADPRGRTAAVKVNYKF
>CP028324.1|AVR95018.1|965113_965356_+|hypothetical-protein
MVSSCWDWPVRKANGRARALPALWAGAVVLRLRVTGAYSARGRHMHCAMHDMYRVWRSAMWVGCGMVGMDRVKRMFTLYR
>CP028324.1|AVR95019.1|965435_965891_-|MarR-family-transcriptional-regulator
MSRMRKPTPDKTAPRGDGLTDALVPTAFVTMALLNKIGAENDLSLTLLRVLGILWDRRPRMTELADHLGLEKQTMSGLIARAEKRGLVGRAPNAVDGRATDVFLTGEGAKLVQRLHGQMQQALAPLTGRLSATDQRQLQELLERMLDDGTR
>CP028324.1|AVR95020.1|965972_966914_+|quinone-oxidoreductase
MKAAVITSFDRPPIHTDMGEPVPELPGEMLVEVLAAGLHQLTRGRAAGAHYSASGSPPFVAGVDGVGRGTDGRLRYFVQAPDQHGTMAERTVIDPRRSIELPDGCDPVVMAAAMNPAMASWLALRCRAPLAPGARVLVLGATGSSGTMAVQVARHLGAVQVIAAGRDERKLARLPALGATATVTLDDERLGELAGDVDVVLDFVWGECAVNAMQRLLVQRCDRSVPLTWVQIGSMAGQVAAIPGHLLRAADLRIVGSGHGSVPERAMLAELPALVEQIARGTFQIDVQRMPLSAVEQAWSRPAPGGERIVFTP
>CP028324.1|AVR95021.1|966930_967782_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MAAPAPAAATGTPAPSKPVANKAVTIPSLRALHAAGEKIAMLTCYDASFAALMERSGVEILLIGDSLGMVCNGHTSTLPVTVQEVAYHTAAVARGAKSAMIMADLPFGSYGTPEQALASCVQLMQAGAHIVKIEGAGWLADTIRFLTERGVPVCAHIGLTPQFVHQLGGYKVQGKTIEGAQALRADALKLQDAGASLVLLEAVPSSVGKDVTEALAIPTIGIGAGPDCSGQVLVMHDLLGVFPGRKARFVKNFMDGQPTIEAAFGAYVAAVKDGSFPALEHCF
>CP028324.1|AVR95022.1|967880_968228_-|hypothetical-protein
MQIPVIVQTVGLLTLSNVFMTVAWYGHLKNLSSKPWWIAALVSWGIALFEYLLQVPANRIGHTQYSLAQLKIMQEAITLSVFVPFAMLYMDQPFKTDYIWAALCLVGAVYFIFRS
>CP028324.1|AVR99037.1|968228_968705_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTAYVGIGANLGDARANVLDAVARLRRLPDTSVTGVSALYRTAPIDSSGDDYINAVARLDTALPAEALLQALLGIELAHGRERPYRNAPRTLDLDVLLYGDERIASPTLTVPHPRLTQRAFVLVPLLELAPTLVIPGLGSATAFLDGVADQAITRLDP
>CP028324.1|AVR95023.1|968713_970237_-|polynucleotide-adenylyltransferase-PcnB
MIKKFIRKILGVKEARNTDEPEILGPEQHGIDPKMVSANAVRVTSTLQEAGFEAFVVGGAVRDLLLGVKPKDFDVATNATPEQVKRLFRRAFIIGRRFQIVHVMFGQDLLEVTTFRGTATANAPKDEHGRVLRDNTFGTQAEDAERRDFTINAMYYNPANQQVLDYHGGMKDIRARTLRIIGQPEARYREDPVRMLRVVRFAAKLKFDIEPTTAAPIAVMAPLINNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGFKFVTLALDSTDRRIAAGKTVSPGFLFASLLWHQVLEKWNAYQAAGEFPIPALHLAADEVLDSQTEKLALQRKIGSDMRDIWSMQPRFERRNGKNPYKLLEHPRFRAGYDFLLLRCASGEIELELGDWWTAFYEADEVTRAELVSSASGTAAKRKRPPRRGQRHKDGEEAGHDEYEGQAQVQADASDDDADEPDDNFGGEAAPAPRKRRRGPRRRKPQGEGAPAGDVPQGSGE

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Crispr_ID: CP028324_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_5

1557314-1557425

Orphan

Consensus_repeat	Method
GGTGACTGACCCCGTGGTGGAACACGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_5

>merge|CP028324|5|1557314-1557425|CRISPRCasFinder
GGTGACTGACCCCGTGGTGGAACACGAGCCCGACCATTGGGCGCTTACGTCTCGCTTGTATTGATGAGGTCGTGTCTCGTTTTGGTGACTGACCCCGTGGTGGGACACGAGC

>CP028324|5|5|1557314-1557425|CRISPRCasFinder
GGTGACTGACCCCGTGGTGGAACACGAGC	CCGACCATTGGGCGCTTACGTCTCGCTTGTATTGATGAGGTCGTGTCTCGTTTT
GGTGACTGACCCCGTGGTGGGACACGAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR95477.1\|1555412_1555904_+\|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|131254
CP028324.1\|AVR95476.1\|1554386_1555328_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176103
CP028324.1\|AVR95483.1\|1559988_1561227_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224537
CP028324.1\|AVR95474.1\|1552600_1552981_+\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319923
CP028324.1\|AVR95485.1\|1563022_1563592_+\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|235341
CP028324.1\|AVR95487.1\|1563809_1564670_+\|cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|238834
CP028324.1\|AVR95480.1\|1557438_1557909_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|349967
CP028324.1\|AVR95482.1\|1558712_1559636_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|273953
CP028324.1\|AVR95475.1\|1553485_1554367_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237229
CP028324.1\|AVR95481.1\|1557925_1558645_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223970
CP028324.1\|AVR95471.1\|1549921_1550965_-\|twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
CP028324.1\|AVR95479.1\|1556447_1557233_-\|addiction-module-toxin-RelE	unknown	unknown	gnl\|CDD\|224854
CP028324.1\|AVR95472.1\|1551069_1551777_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
CP028324.1\|AVR95489.1\|1565012_1565735_+\|cytochrome-oxidase-biosynthesis-protein	unknown	unknown	gnl\|CDD\|119401
CP028324.1\|AVR95488.1\|1564777_1564978_-\|DUF2909-domain-containing-protein	unknown	unknown	gnl\|CDD\|378564
CP028324.1\|AVR99075.1\|1553010_1553304_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
CP028324.1\|AVR95473.1\|1551779_1552604_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
CP028324.1\|AVR95484.1\|1561240_1562836_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
CP028324.1\|AVR95486.1\|1563588_1563789_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378581
CP028324.1\|AVR95478.1\|1555884_1556343_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225205

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR95477.1\|1555412_1555904_+\|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase	gnl\|CDD\|131254	TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.67752e-65
CP028324.1\|AVR95476.1\|1554386_1555328_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176103	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The C-terminal domain also contains the redox-active cysteines that mediate the redox-dependent conformational switch. Thus, the interaction between the OxyR-tetramer and DNA is notably different between the oxidized and reduced forms. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.91026e-87
CP028324.1\|AVR95483.1\|1559988_1561227_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	9.4845e-70
CP028324.1\|AVR95474.1\|1552600_1552981_+\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	5.06823e-41
CP028324.1\|AVR95485.1\|1563022_1563592_+\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|235341	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional.	1.40059e-92
CP028324.1\|AVR95487.1\|1563809_1564670_+\|cytochrome-c-oxidase-subunit-3	gnl\|CDD\|238834	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.	5.46254e-91
CP028324.1\|AVR95480.1\|1557438_1557909_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	8.46218e-89
CP028324.1\|AVR95482.1\|1558712_1559636_+\|SAM-dependent-methyltransferase	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	3.09684e-42
CP028324.1\|AVR95475.1\|1553485_1554367_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237229	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase.	7.52605e-160
CP028324.1\|AVR95481.1\|1557925_1558645_-\|amidophosphoribosyltransferase	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	9.38653e-50
CP028324.1\|AVR95471.1\|1549921_1550965_-\|twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP028324.1\|AVR95479.1\|1556447_1557233_-\|addiction-module-toxin-RelE	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.53184e-18
CP028324.1\|AVR95472.1\|1551069_1551777_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	5.34616e-135
CP028324.1\|AVR95489.1\|1565012_1565735_+\|cytochrome-oxidase-biosynthesis-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	9.50157e-56
CP028324.1\|AVR95488.1\|1564777_1564978_-\|DUF2909-domain-containing-protein	gnl\|CDD\|378564	pfam11137, DUF2909, Protein of unknown function (DUF2909). This is a family of proteins conserved in Proteobacteria of unknown function.	1.65759e-17
CP028324.1\|AVR99075.1\|1553010_1553304_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.465e-20
CP028324.1\|AVR95473.1\|1551779_1552604_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.02052e-116
CP028324.1\|AVR95484.1\|1561240_1562836_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
CP028324.1\|AVR95486.1\|1563588_1563789_+\|hypothetical-protein	gnl\|CDD\|378581	pfam11174, DUF2970, Protein of unknown function (DUF2970). This short family is conserved in Proteobacteria. The function is not known.	4.37893e-14
CP028324.1\|AVR95478.1\|1555884_1556343_-\|hypothetical-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	1.47248e-27

>CP028324.1|AVR95479.1|1556447_1557233_-|addiction-module-toxin-RelE
MSRPPRTLFPGAIYHVTSRGNRRANIYADERDHLIWLDVLAETAQRYDFKVHAYCMMPNHYHLLVETPSANLSEGMRFLNGRYASRHNDRHGLVGHVIQGRYFAVLVERDAQLLEAVRYISLNPVRAQLVSRAADWRWSSHCYMTGAAAVPPWMSLEWLLDHFYGKSPAEQAEAFSVFVDAGLREPSPFSKKLTKSRCLEAFDARPSPTSTNAAIASAYATGQFTRAELAAHFGVSVKTVSRAISDQASSNTAEPVSRFGD
>CP028324.1|AVR95478.1|1555884_1556343_-|hypothetical-protein
MFDMDLPWWEFIARGGIIYIFLLIMVRLTGKRTIGQFTPFDLLIVMLLSEAVSNSLNGGDDSLQGGMITATTLIALNVIIAIATSRSRKIAEMIDGTPVLLGRDGHIFHDVVKKCRVAEGDVEQALREADCPLHKMKCAFLEPDGKITILQN
>CP028324.1|AVR95477.1|1555412_1555904_+|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase
MPRFEEKICTRADLAARVAALPKPVVLTNGVFDILHRGHVTYLAQARELGASLVVAANTDASVKRLGKGDDRPLNTCDDRLAVLAALEAVSLVVPFEEDTALEVVLEARPEIYAKGGDYDMTAIPEGQAVLGYGGQAVAIDFEHDRSTTKLLAKVRTFSSAGS
>CP028324.1|AVR95476.1|1554386_1555328_-|LysR-family-transcriptional-regulator
MTLTELKYIVAVARAKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGTEISVTPLGAQIVAQAERVLEQTAAIKELAKQNKDPLAGPLRLGVIYTIGPYLLPPLVKAMIEKTPQMPLILQENFTVKLLELLRQGELDAAIMALPLPDHGMAMQALYDEPFVVAMPNHHPWVERERIPAEDLKSETMLLLGNGHCFRDQVLEVCPEMARYATPGNGMQRTFEGSSLETIRHMVASGIGLTVLPRASVPDMNATGGMLQFRYFEEPQPSRRVVIVWRKSFTRKAAIDAVVEAVAQCELPGVSSLAADATV
>CP028324.1|AVR95475.1|1553485_1554367_-|4-hydroxybenzoate-octaprenyltransferase
MSVSAPAPALSKLELYFRLVRLDKPIGTVLLLWPTLSALWLASGGVPAWHLLVIFCLGTLLMRSAGCAINDYADQDFDRHVKRTADRPITSGRISGKEAVAIAAGLSIVAFLLILPLNALVKQLSVAAVIIAGTYPYFKRFFAIPQAYLGIAFGFGIPMAFAAVQDTVPGWAWLLLLGNVFWAVAYDTEYAMVDRDDDLKIGIKTSAITFGRWDVTIIMLCYLVHLAILLAAGTYVGLGIWFHAGLAVAAGCVVYHWFLIRGRERAPCFAAFRHNNYLGAAVFAGIALDYALR
>CP028324.1|AVR99075.1|1553010_1553304_-|DUF883-domain-containing-protein
MTAARDRLMSDLKKTISDAEQWLRGAAHSEEVGEARAKMQETLRSAKTNLLTLEDSVLARTKLAAQATDTYVHDNPWKAVIVGGVVGLLLGVIVSRD
>CP028324.1|AVR95474.1|1552600_1552981_+|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein
MIHHLSLGVRDLAASAAFYDAALGALGFRRVFEDDDAIGYGTVDDEDMLCLKLRPDAVAPGAGFHLAFGATGRAAVDAFHAAGLRAGGSDNGAAGLREEYGPTYYAAFLVDPDGHRVEAVFKEGPM
>CP028324.1|AVR95473.1|1551779_1552604_+|pyrroline-5-carboxylate-reductase
MKIAFIGGGNMAAALIAGLAGKVTPGANIHVVDPNAQALERLQREHGVTTAGAIDAAVTQGEVIVLAVKPQNMRDVTAVLQPLLAATSHQPLVVSIAAGIRARDLARWLGGYDAIVRCMPNTPALIGMGVTGMVAHDGVTAGQRTLADQVLQAVGTTLWLDDEALIDAVTAVSGSGPAYVFYFIEAMQQAGVELGLTAEQSLALAQATFTGAAQLAARSEEPVAVLRERVTSKGGTTHAALSSMEQGGVKAAIVTAVKAAAARGKELGDELGAQ
>CP028324.1|AVR95472.1|1551069_1551777_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MSTITENLQAVADAIDAATAEARRPRDSVRLLAVSKTFGPDAVIEAVQAGQRAFGENYVQEGIDKVAAVAAALPDRALEWHFIGPIQSNKTRPIAEHFDWVHTVEREKIAQRLAEQRPAARAPLNVCLQVNISGEASKSGVAPGEVAALARVVATLPQLRLRGLMAIPEPTEDFAAQRAAFAALRALYDQLNAQGCALDTLSMGMSADLRAAIIEGATIVRVGSAIFGARHYNKG
>CP028324.1|AVR95471.1|1549921_1550965_-|twitching-motility-protein-PilT
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKAYEEMLEIDFSFAIPGLARFRVNAYNQERGASAVLRTIPSKILTLEELNAPKIFADFALKPRGLVLVTGPTGSGKSTTLAAMINHLNEQEYGHILTIEDPIEFVHESKKCLINQREVGPHTLSFSNALRSALREDPDAILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRIVDVFPAEEKEMVRAMLSESLQAVISQTLLKTKDGAGRVAAHEIMVGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQNLTDLVRRNVISATAARAAAKIPENFPG
>CP028324.1|AVR95480.1|1557438_1557909_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MFHVVLVNPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLDDAKLRRAGLDYHEYARMKVHKDWDAFLAAVQPDTTRMFAMTTHGSTPFAQLAFQPGDVFVFGSETRGLAPEFRDSFPTTQRIRVPMRPDNRSLNLSNTVAIVVYEAWRQQGYDGGS
>CP028324.1|AVR95481.1|1557925_1558645_-|amidophosphoribosyltransferase
MGGGLWRAGLARLLPCGCVLCGALGREPLCPACRAQFCGVGPCRCPVCAEPLADDATGLPCGRCVARRPAYDATVAAVSYQMPLDRLVLELKFGGRLAHARLFASLLAEASQATLLEERPALLCPVPLAPGRLAERGFNQALEIARPLGKLLGIAVAPRLAQRVQETSAQSRLRGAARRANMAHVFAVPDRAAVAGRHVGIVDDVMSSGQTLHELAAVLKRHGATRVTNLVFARTPPHR
>CP028324.1|AVR95482.1|1558712_1559636_+|SAM-dependent-methyltransferase
MQVPAKPPKLSAPIDVDRVRQLFSRPARVQDGDFLRREIAHRMHERLQLVRLAPQRVLDAGCGSGADLALLHKAYGATQVIGIDASEAMLRSLPGQPGRQSALNQLLGKLLPAKSGIDLLCGDFADLPLGPTTVDLVWSNLALHWHPQPDRVFAEWRRVLRVDGLLMFSCFGPDTFQEVRAAFADVDLAPHTLPFVDMHDFGDQLVEAGFATPVMDMEKLTVTYDDANKLLADVRALGGNPLTTGRKGLLGRGAHAKLLAGLEKGRRADGKLVLTFEVIYGHAFRPAARMTKDGEAIIRFDPTRRGR
>CP028324.1|AVR95483.1|1559988_1561227_+|cytochrome-c-oxidase-subunit-II
MKLAKRLESLMLGLAATVATSLAGAPAWAQQPASTATGTYHAATGGTGGPTPHELNLQPAATQIASEIYSLHNWMMIVCLIIFVAVFGVMFYSIFKHRKSVGHKAATFHESTAVEIAWTVVPFLIVIGMALPATRTVVGMKDTSNADITIKATGMQWKWGYDYLNGEGEGISFISNLATPRSQIGSPGVEPTEKRGENYLIEVDNEVVVPVHKKIRIVTTANDVIHAWMIPAFGVKQDAIPGFVRDTWFKSEHTGVFRGNCAELCGKEHAFMPIVVRVVTADEYTAWVDKKKKEMAALADDPNKTWTIDELKTKGEKVYTANCAVCHQANGKGVPNAFAPLDGSEVVNGPKAPQIDVLLHGKKSGNYPAEMPAWKQLSDTDIAAVITYTRNNWSNKPEQNIVQPAEIVAARK
>CP028324.1|AVR95484.1|1561240_1562836_+|cytochrome-c-oxidase-subunit-I
MSTTTLDHAHGHDHDHAHDHPTGLRRWLFATNHKDIGTLYLWFSFIMLLSGGVLALMIRTELFQPGLQFFQPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQVGASDMAFARMNNFSFWLLPPAALLLAGSFFVPGGATAAGWTLYAPLSTQMGPGMDMAIFAMHIMGASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKPLFGYASMVYATASIAILSFIVWAHHMFTTGMPVTSQLFFMYATMLIAVPTGVKVFNWIATMWKGSMTFETPMLFAVGFIFVFTMGGFTGLILAVTPIDIQVQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWTGHMYPELRGKIHFWASLITFNITFFPMHFLGLAGMPRRYADYPTQFTDFNAIVSIGAFGFGLSQVYFLFFVVLPTIRGGEKAADKPWEGAEGLEWTVPSPAPFHTFETPPLVK
>CP028324.1|AVR95485.1|1563022_1563592_+|cytochrome-c-oxidase-assembly-protein
MSEARESNRRMLGKLLVVAVAMFGFGYALIPVYRHICEVLGINVLTQKDGTVAPPQNTQVDLSRSITVELDSNVQGTLRFRPTQRSVTVHPGEMTTVVYEVVNSQARPVTAQAIPSYAPQSATPHFKKVECFCFQQQTLQANEAKQMPVMFYLDPALPKEVKTITLSYTFIEIAGLDKTASAGTAKAVQ
>CP028324.1|AVR95486.1|1563588_1563789_+|hypothetical-protein
MSGQDGKPSFLYSLKAVLWSFVGLRRKSDFDKDEVKLNPFHVIVAGLLAVAVFIGILVTIVKLVVS
>CP028324.1|AVR95487.1|1563809_1564670_+|cytochrome-c-oxidase-subunit-3
MSSNNATAPHYFVPGPSRWPMLAGMSMLATMIGASGWVNDAAWGRILCLAGIVAMIAVLFGWFGDAIRESEGGLYGKRIDYSYRWSMGWFIFSEVMFFGAFFGALFYARAITMPWLGDLDNKLLWPDYSPQWGNAGPAGVIDTFSTMGPFPIPTINTALLLTSGVTLTIAHHALQAGKRAKTIVWLAATILLGAIFMGFQAYEYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAIMLAVVLFRLMKGHFTAEHHFAFEGAAWYWHFVDVVWLGLYVIVYWL
>CP028324.1|AVR95488.1|1564777_1564978_-|DUF2909-domain-containing-protein
MKILVAIAFILIIGSLGSALFYLMRDRGGSKRTVRALALRVGFSVLLFVLILVANRLGYIQPTGLH
>CP028324.1|AVR95489.1|1565012_1565735_+|cytochrome-oxidase-biosynthesis-protein
MRIAFRFKLVPFIATVVLVALGIALGQWQTRRAEQKLALQAKLAAANAQAPLRLDGALLTPEQAEWRRVAVRGTFVANWPVYLDNRPHGGQAGFYVAMPLRIEGSNRHVLVLRGWLPVDAARRQRIMPYATPAGPVTIEGIARRDAGHVLQLGDAVPPAPGAIVQNAEVAQVAAASGLQLLPFVIQQTSGGTDGLVRDWPSPELGVDKHRGYAFQWYALALTALLFYIITGFISGRKQNR

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Crispr_ID: CP028324_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_6

1885962-1886083

Orphan

Consensus_repeat	Method
TCAGAAATGTCCGGGACTGTCCCGGACTTTTCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_6

>merge|CP028324|6|1885962-1886083|CRISPRCasFinder
TCAGAAATGTCCGGGACTGTCCCGGACTTTTCCGAAGCCGCTGCACGGCGGGCTGGACGCCTGGAACAGCGCCTTCGGCAACTGATTTTCAGAAATGTCCGGGACTGTCCCGGACTTTTCCG

>CP028324|6|6|1885962-1886083|CRISPRCasFinder
TCAGAAATGTCCGGGACTGTCCCGGACTTTTCCG	AAGCCGCTGCACGGCGGGCTGGACGCCTGGAACAGCGCCTTCGGCAACTGATTT
TCAGAAATGTCCGGGACTGTCCCGGACTTTTCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR95724.1\|1898312_1898519_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR95721.1\|1895706_1896111_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
CP028324.1\|AVR95719.1\|1891116_1892682_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
CP028324.1\|AVR95722.1\|1896107_1897037_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|234986
CP028324.1\|AVR95723.1\|1897117_1897837_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR95717.1\|1888329_1890270_+\|23S-rRNA-pseudouridylate-synthase-B	unknown	unknown	gnl\|CDD\|224108
CP028324.1\|AVR95716.1\|1887614_1888343_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|224304
CP028324.1\|AVR95720.1\|1892726_1895615_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
CP028324.1\|AVR95718.1\|1890631_1891120_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
CP028324.1\|AVR95709.1\|1866987_1868277_+\|aspartyl-beta-hydroxylase	unknown	unknown	gnl\|CDD\|377460
CP028324.1\|AVR99093.1\|1868596_1871479_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028324.1\|AVR95712.1\|1881387_1882326_+\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
CP028324.1\|AVR99094.1\|1875192_1877964_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028324.1\|AVR95711.1\|1878371_1881155_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028324.1\|AVR95710.1\|1872006_1874850_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
CP028324.1\|AVR95713.1\|1882322_1883336_+\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
CP028324.1\|AVR95707.1\|1862753_1865303_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028324.1\|AVR95708.1\|1865875_1866934_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|236435
CP028324.1\|AVR95714.1\|1885028_1885958_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|223659
CP028324.1\|AVR95715.1\|1886273_1887287_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR95721.1\|1895706_1896111_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.04317e-48
CP028324.1\|AVR95719.1\|1891116_1892682_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
CP028324.1\|AVR95722.1\|1896107_1897037_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|234986	PRK01851, truB, tRNA pseudouridine synthase B; Provisional.	3.96029e-154
CP028324.1\|AVR95717.1\|1888329_1890270_+\|23S-rRNA-pseudouridylate-synthase-B	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.40823e-90
CP028324.1\|AVR95716.1\|1887614_1888343_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|224304	COG1386, scpB, Chromosome segregation and condensation protein B [DNA replication, recombination and repair].	1.91533e-57
CP028324.1\|AVR95720.1\|1892726_1895615_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
CP028324.1\|AVR95718.1\|1890631_1891120_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	1.51641e-50
CP028324.1\|AVR95709.1\|1866987_1868277_+\|aspartyl-beta-hydroxylase	gnl\|CDD\|377460	pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase. Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalyzing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.	3.28419e-53
CP028324.1\|AVR99093.1\|1868596_1871479_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.50526e-25
CP028324.1\|AVR95712.1\|1881387_1882326_+\|peptide-ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.85391e-90
CP028324.1\|AVR99094.1\|1875192_1877964_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.97296e-43
CP028324.1\|AVR95711.1\|1878371_1881155_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.73038e-34
CP028324.1\|AVR95710.1\|1872006_1874850_-\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	5.29504e-30
CP028324.1\|AVR95713.1\|1882322_1883336_+\|peptide-ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.95676e-68
CP028324.1\|AVR95707.1\|1862753_1865303_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.26772e-58
CP028324.1\|AVR95708.1\|1865875_1866934_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
CP028324.1\|AVR95714.1\|1885028_1885958_+\|sulfurtransferase	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.60074e-31
CP028324.1\|AVR95715.1\|1886273_1887287_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	4.63524e-139

>CP028324.1|AVR95714.1|1885028_1885958_+|sulfurtransferase
MANLISLLQEYGVLIVFIVVLVEQMGLPLPAYPILIVSGALAIGEGGTGNGTALAGVLAVSLGACLLADFFWFRAGRHYGKRVLRLLCKISLSPDYCVSQTEDNFRKWGPKSLIVAKFIPGFNTIGPPLAGAMGTRASVFFSFSALGGLLWSLTGISIGAYFHANVDQVLDMLATMGSTALTVLGILLALFVLFKYIERRRFQRAMQTERISVEQLKALLADGHEPVLVDARSATAQQMEPPVPGALLLNGDPATILAALPRDRHIVVYCSCPNDVTAASVAKQLQEQGYTLAKPLHGGLDAWNSAFGN
>CP028324.1|AVR95713.1|1882322_1883336_+|peptide-ABC-transporter-permease
MSARLNDDAAGLWTLAWRRLRADRVAMVALAIVAAFLVMVVASATGLVAADWEEEVGINYAPPTFVGAEPAAMAAAAATGQPAPDNPFDPLAAEIRALRAQLGTEQAAPRRATLPFGADKWGHDVIKKTIKGGETSIVVGLVAALVAVGLGTLVGAVSGFYGGIVDDLCNWFYNVFTSIPSILMILTVAAVLQHKGVTTIVLILGLTGWTGPYRLIRAEYLRHKAREYVLAADAIGASNARKMFAHIFPNVSHVALVQLSILAVGFIKAEVILSFLGFGVPVGVVSWGSMLNEAQNELLLGKWWQLSAAAVAMAVLVTAFSLLADALRDALDPKVKA
>CP028324.1|AVR95712.1|1881387_1882326_+|peptide-ABC-transporter-permease
MLAFVLRRLWQMLPTMLGVVLLVFVLFNWVGGDPAYILAGKMSSPEAIANIRRQLGVDEPYPVQLWIFVKQVLTFDFGQSWATGEPVRQVIGSRLGPSLTVLVPLTVLETLIGVALALAVAFVRGSLTDRAVMIACTVGMSISILVYIIVFQYGLAYKLGLFPVQGWGDSFAVNLLRYAPLPILIGLAVSLAPTLRLYRSFVLDEVNQDCVRTARAKGLPERRVMWVHVLRNAAIPIITHVMANLPALLIGAFLLERFFGIPGIGREVILAVERSDFPVIKAVTVCVAAATMVFNLLADLLYQAVDPRVRLA
>CP028324.1|AVR95711.1|1878371_1881155_-|TonB-dependent-receptor
MVEKLLSRSVRLLCAGGLLACGLAQAQTDSGAPMQRVEITGSSIKRATAETASPVQVVSRDELLRSGKGTVAEYLQTLAVDGAGSLPTGFGNGFAAGSTAISLRGLGATSTLVLLNGRRMAPFARADDGQKSFTDLSTVPMQIVERIEILKDGASSTYGADAIAGVVNIILRRDFQGLEVKGDTGWSRYDDGKQNKASITYGRGDLEADRYNWVVNAEYFQSDSIANSDRAGRRRHIGMGDLRPWGFPVGTQFAGGYIAGTNNANQSPAGSVRDPVTTNYLGLPGCAGVTATTNQAGANGGCLYHHSQWRDMQPEIESLNLYTRGTFQVNAATQAYVELGYSKRDTSFTMIPPHFTPTVAFPPNAQNPQGFINYGNLNLLAATHPQNPFGAPARIRYLAADIGPSVRHADNAFKRFVTGIKGNAFGWDYDAGFTYSKSELQLRYTNMLNMNVMRAALGDPTSRYFPYYMGAEAYRNPASLYAALAVDATSDSTTSLSAFDIKASRELFALPGGNLGVAVGAEHRREKLSNPSLSGSENGSINSNYVAAFGDSKVSAVYAELLAPVLKGLELSAAVRYDKYDNFNSTTPKAGVKWTPVKSFALRGTYTEGFRAPGPAEGGARSQSTGNSTVADPVRCPGGKPAPGGATSTDCGFSVAAVKVGNPNLQPETSKGYSLGLVWDPFDGSSIALDGWKIKRSNEINPMPYNEAAALPTAIRSDNNLVVNGVVIPNSGTLIMTQAPYRNSSFTEVSGVDLDVRQRLRLGEYGRLNLGVVISHTASWKRQESATTSYQFAGTHGNCDTSNCAGTPKNKVNATATWDIGAWNFNANLNWRDKMKNILYEGRECGSTLANGQPGTPDCEIASFTTLDLSTRFAVSKQLTLFASVNNVTDKVAPLDPLTYGGISYNPMDASGAIGRYFKVGAHYKFF
>CP028324.1|AVR99094.1|1875192_1877964_-|TonB-dependent-receptor
MARSVRLLFAAAGMGAAALPALAQDAPMQRVEITGSSIKRATAETASPVTVINSDELLRSGKATVAEYLQTLTVDGAGSLPTSFGSGFAAGSTAISLRGLGATSTLVLLNGRRMAPYARADDGQKSFTDLSTVPMQIVERIEILKDGASSLYGADAIAGVVNIILRKDFTGLQVRGETGWSRYDDAKQNKASITYGQGDLDEDKYNWVVNAEYSQSDELAASSRKNRDWIGHGDIRPWGYGLPTQYASGYISNGAASPSPTGSLLNPATGQYVSLPGCANFSQATQGDPRGGCVWHQDQFRSMQPEIESLNLYTRGTWQINPNLQAYTELGYSERRSSFTMTPGSTSGTIIFPGANNVPQLINYGSLINMDATHPQNPYGKDVRLRYSMFDVGPSVRNAKNTFNRFVVGLKGNNAGWDWETGYTHSESKLDLAWTNMINMKVLNDALSNPASSLFPYYIGAQAGKNSPALYAALTRTATSHSTTKLDIVDFKATRELPFALPGGNVGLAIGGEHRQEKLNNPSFGGSEDGSINSSYTAAFGDSKVSAVYIEALAPILKSVEVTGALRYDHYDKFNSTTPKLGIKWTPVKTFALRGTYTEGFRAPSAAENNTRSQATGSASVQDPVRCPTNAAGVPTPIAGASQGDCSISISSIKIGNPDLKPEESKGYTLGLVWDPFDGTSLAVDGFKIKRENEINPVSYAEAATRPGAVRNDNNLKDAAGNVIPNSGTLLVVQGAYRNSSFTEVSGVDVEIKQRLRLGEYGKATIGLTWTHIASFLRAESDTLRYQFAGTHGNCDTSNCMGTPKNKLNLTASWDIGAWNFSGTANWRDSMKNIRYEGAPCASQFADGTVAPNGCKLASFTTVDLSTRWNVSKQLTMFASVANVFDKVAPLDPLTYGGMSFNPLDNSGAVGRYFKFGAQYKFF
>CP028324.1|AVR95710.1|1872006_1874850_-|TonB-dependent-receptor
MGCACSAYPAKLFCCWHLPKEVAMIEKVLSRSLRVMFAGGLAMGMHAATAQEAAEQPMQRIEITGSSIKRIAAEASLPVQSFNQKDIKKSGVTTVTDFIQQIPAMQGFSVAADSVGGGGGGVTTASIHDIGSAYTLVLLNGRRVAPANSGTTIDLNSIPLSAIERVEVLTDGASALYGADAIAGVINFILKKGATDWEINAKYNRPQESGGASNSVSISKGFGDLEEDGYSVFFSASHDEQKALKASQRDFARTGIVNFTDPATGRALQFINGSARAIPANATVKYKTGTGTESVNLNPYALAHGGCAPLNHDFYADGNCWFDSASTIEINPETKRDALFSSGSMKLGQSGFNAFYDFAYTEANVRASIAPLPAQFSITPGSSLYNQYILPHLTPEQAANVSNVVANYRATGLGNRVYDYGTKATHLVVGVDGSAFGWDVNSALTWSRNKQKTDYVSGTPWADKFQAAVDAGTIDPFAGTVSDATRAALRASDFSGLYNTQTVTMKGWDARGSRSAFALPGGTAMLGVGVDYRNTAYTMAQEDVALNAALLGDGGAVDSGYERDNAGAYAELMMPVSKQLELTGSVRYDQIGAVKDKLTGQKVGNKENATTWKLSGKYSATKSLMFRAAAGTGFRAASMQEIAGVQEDWGVTGGNYQCPLTGTSHPLASYCNNVGRQQFEAFRGGNPNLKPEKSKQWSIGTVWEPTNSISMAIDLWNVKISDQVTEVNEADIFAHPEKYADLYTTKPLNATGEDVLAVKLLPINIGQRENRGIDYDFTHKINVYGGKLTSRLAGTYLIRSRYTVPGTSDEWTTSLNRYGIDDAVSFRHIVKASSSFETKQFTHTLTAAYRNGYVDKEQTVGDCAVIVAGAPGECYGVTLRVPSYTTFDYQLAYRPMAKTEITAGVINLFDRNPPFTLRNAGPHQVGYNPSYSSALGRQFYLSASYKF
>CP028324.1|AVR99093.1|1868596_1871479_-|TonB-dependent-receptor
MQAAHAQQAPGAGEAPMVKVEVTGSRIPTANLEGTSPVTTITAKDIKTDGVRNVESLLNNMPQVFADQGGNVVNGSTGTATVNLRGLGAERTLVLVNGKRLPMGSPTNTAADLNQIPAPLIKRVEVLTGGAGAVYGSDAVAGVVNFIMQKDFQGVQVEANISGFNHQQNGGAVADLVATRGASNPSQFAVPGDKGWDGKSRDASILMGSNFADNKGNATLFFSYKKEDELLQADRDFSACTVSSTATGFACGGSGTNATGRIQALDGPQKGKVYTVDGSGNARVFNNALDQYNFGPLNHYQRPSERYGFNANIHYDINEKMRLYSDFSFHDDRTVAQIAPGGIFGNSATLRYDNPFLSQQLKDTLGITPTTPVEVVVNRRNVEGGGRQSEYRNTSFRELFGIQGELGIWSYDVYAQSAKVIYSQSEENYFSSQRIDKALDVINVNGKAACASGDAGCVPYNVYQTGGVTPEMLAYLQIPGMRKGSTEQQFQGATIGADLSEYGWKLPTAKSGIGVSFGFEHRREKLELTTDAATQAGDLSGSGGPTGGVSGQYSVKDFFGETKVPLIEDMPFAKQLQLEGSYRHSDYSTGNKTNTFGLGLVWSPIDQVRFRGTYQKAVRAPNLIELFTPRGNALFDMDTDPCSGADPKAKPEQCAFTGVTPAQYGTISDSPAGQYNYLQGGTATLKPEKAKSKTFGVVLTPTRDLSLTLDYFDIKVDDKIDKVDPATTLAKCLATGEARFCSLITRDRTGSLWLFDEARIIGVQQNIGSQHTRGLDIGANYALRAGEWGRFGLAFNGTYLDKLTTEEIKGEGTYDCVGYYGANKCESPNPKWRHKLRGSWATPWNVDLALTWRHVNAVKLQNLSDNPLLNDRDSMTAEEFADGHGTNPVDRELGKRDYLDFAATYTYKRNYTLMLGINNVFDRDPPLTSQLATGLGNGNTYPSTYDALGRRIFMSVTARF
>CP028324.1|AVR95709.1|1866987_1868277_+|aspartyl-beta-hydroxylase
MGLPIREDIAALQRQIAAAIQAGRDNEAGQLWQRLLDIDPDSTKALFALSQRAFRAGDLQRARELLGRLVALDGQDLQQWINLAVVCRGLHDDEGEAAALTGALTVDPTDMLAQLLRGELFERQGRRHEAVRAYGAGAMAAPPLEKLEPSLRPLLQRALAFQDAYQRDYGDWMDAHLAPLLRDLQGEPLGRFRDAVDIMFGRKRRYDPQPALFYYPGLAPVTFFDRALFPWMPALEAQTDAIRAEFLAVLERQDGFVPYLSYPPDQPHFQFAQLNNSPDWSAYHLIEQGRVVTDHAAQCPVTMAALANVPQPRQLNRTPSAMFSLLRPRTRIPAHTGVSNVRLVAHLPLILPGQCALRVGNDVREWQMGKAWAFDDTIEHEAWNDSDALRVVLIFDVWHPHLSEAERTMVSALADGIVQFGAGGGGFEL
>CP028324.1|AVR95708.1|1865875_1866934_+|3-deoxy-7-phosphoheptulonate-synthase
MQRTDDLRIREMKELTPPSHLIREFPCTEAASQTASAARIALHRILHGQDDRLMVVVGPCSIHDPKAAMEYARKLTEVRARLQGDLEIIMRVYFEKPRTTVGWKGMINDPYMDNSFRINDGLRMARELLRDINELGLPAGTEFLDVISPQYIADLIAWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNTKIAVEAIKAASQPHHFLSVTKGGHSAIVSTNGNEDCHIILRGGKTPNYDAASVEEACKAIASHGLAARLMIDASHANSSKKPENQVPVCADIAAQVAGGDDRIVGVMIESHLVAGRQDLVPGKELTYGQSVTDGCIDWDTTVQTLNNLADAVRQRRLRGE
>CP028324.1|AVR95707.1|1862753_1865303_-|TonB-dependent-receptor
MQRVEITGSSIKRLVNETATPLTVFKAEEFVKQGLTTAQEVLDRIPANQTSFGSANAVGGNASGLPTGGQATADLRGLGGDKTLVLLNGRRLASHPYDGASVDLNLIPVAALERVEVLRDGASAIYGTDAIGGVINFITRRSVQQTTVAIETVLPQHTGGRERRGNLTTGSGDLAREGWAVLGVLDYHKQDVLTSQQRPFSQTGVIPSRGLSETSGTTFPGNYYDAVADKAGNPGFATGCLAPLSIPRASDGTCRQDYTRQIDSLPEQERATAFGRASFKLGADHTATFEVLHSENRVNSRTAPPPQTGLILPATSPFYPGNSGGVPAQAGLSGSPLSVNWRPTEAGQRQILSRGSGDRFLGSLEGIVAGWDYAGGLSHSVSRSSEEFTGGYVQDASFAAGVANGILNPFGLQNEAGRAYLATTALRGRVQDAKNAQTAFDLKASRELMDMAGGKLAVALGTELRHEKAEFNVNRDIAGQAASSGLSGSLPKSGSRTIQAVFGEINLPFMQNLEASLAARWDHYSDVGSTTNPKASFRWQPHKTFVLRGSASTGFRAPTLFEKNAPQSRNDTSNSYNDPILCPGGVPQPGSNPLRDCDLQQFKLQGGNPNLQPEKSRTFALGAVFEPTPAVTLALDYFNIRLREKIGALPEQAIYGNYTKYADRFLRFPDGSPNAILDLNENLGKVRTDGVDVSLTLRAPRTDFGNFTFTLDGTYIHNYEYQNERDGEFVQNTGRYADNYVVFRWRHNAALTWRSGVWSATLAHNFKTGYDDQNLVDDEFRNRVPSYSLVNLSGTYTGFKNVSLTAGVKNLFDKEPPFSNQGTVFQKGYDPRYTDPIGRALYLRGSYSF
>CP028324.1|AVR95715.1|1886273_1887287_+|glucokinase
MSDSASLITSSVFPGGARLLADIGGTNARFALETAPGQVGHIHVLACADHATLADAMRAYLALPDLAAASKGIRHGAIAIANPVTGDLVRMTNHHWEFSIEALRRDVNFEVLAVVNDFTALARSLPHIPAAQKRQVGGGTAVEGTPLGLIGAGTGLGVSGLIPSASGWTALLSEGGHVSFAPMNETEVAILQFAWKEFEHVSAERLLSGVGIELIYRALADYRKLDAEVLGAPEIARRALDGSCPLCDDTIEAFCTMLGTIAGNLGVTLGAQGGIYIGGGIVPRLGERFDRSGFRTRFEAKGRFRNYLAAIPTFVITAEYPAFLGVSAILAERLAAA
>CP028324.1|AVR95716.1|1887614_1888343_+|SMC-Scp-complex-subunit-ScpB
MDTAEAKKVLETALLCAREPLSIHSLKKLYVDIDDQGRPLGTGVGADTIKQLLEELRQDWQGRGIEVVGLASGWRFQSRPEMKQYLDRLNPEKPQKYSRATLETLAIIAYRQPVTRGDIEEIRGVAVNSQTIKMLEDRGWIDVVGYRDVLGRPALLGTTKQFLDDLGLQSLSQLPPLQQISDVQNANSMEVLEAALQENFEKAAHAAAVPDNVAPEEAPATGAVPQVAPDADPTQEQTNEQH
>CP028324.1|AVR95717.1|1888329_1890270_+|23S-rRNA-pseudouridylate-synthase-B
MNNTDKTNETGAQEVAAAAVKPKRRTKAQIEADNAALLAAGETPKPKRTRKTAASAEGAAAPAEVAAVADTAPVAAEAAPVKKPRGRAAKPAAVTPVEAAPVAVEPQQAPAAAPSEPAVSGEKKARTPRGPRQMREQRALREVEKAERAEAAPAAEPVQEVVVAAEGAAAPERAGRGEGRGEARNGKRKGKQGKPAQQAQGQQGQQGQQGQRRQGGNGGGKLSEADAVFSFVTSDAFDRDEGARAKGPQKAARRDLTAEDDAPKLHKVLAEAGLGSRRDMEDLIVAGRVSVNGEPAHIGQRILPTDAVRINGKLIQRKVSKKPPRVLVYHKPAGEIVSHDDPDGRPSVFDRLPQMKVGKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYNIDREYAVRTLGVLEEGMRQKLLAGVELEDGLAQFSKIADGGGEGVNKWYRVVIGEGRNREVRRMFEAVGLTVSRLIRTRYGALTLPSNLKRGRWEEMEENTVRDLLAMVGVEKKQSGDGAAKGGNARGERNGNERGGEKRGREREQNFNRLDVSNKNADPFPQAPRGARGGQGQGSYFGAGGTGRPGTAGRGQGFGRAGLGDQGGGRPGQPAKARGPKQPDPLQTTFGFAAQPRRGGPPRGGAIDHGMPRRRKG
>CP028324.1|AVR95718.1|1890631_1891120_+|ribosome-maturation-factor-RimP
MQLLDLIEKTVAGLGYELVDFERAERGLLRVYIDFPAADAEEKGPITVEDCATVSHQLSHVLTVENVPYERLEISSPGLDRPLRKLSDFERFAGHEAIVKLRMALPGTSNRKSYQGILQQPEGEQLGIEFESKDGPAVLNFTLADMDKARLVPQVDFRSRKA
>CP028324.1|AVR95719.1|1891116_1892682_+|transcription-termination/antitermination-protein-NusA
MSREVLLLVDALAREKNVDKDVVFGALEFALAQATKKRYEGEVDIRVSIDRDSGEFESFRRWHVVPDEAGLQLPDQEVLLFEAKEQIPDIEVDEYIEEPIESVEFGRRFAQDTKQVVLQRVRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRNMRGPQVILSRTAPEFIMKLFELEVPEIEQGMLEIKSAARDAGVRAKIAVYTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIMVDEEKHAMDVVVDEENLAIAIGRSGQNVRLASELTGWKINIMTAEESADKAAQETAAIRALFMEKLDVDQEVADILVEEGFASLEEIAYVPISEMLEIEAFDEDTVNELRTRARDALVTEAIASEEGLEGMEEALVGLEGMDRITAGKLGLAGIKTVEQFAGLAYDEFGAILALSSDRARELINTEFADVTDDEMKLVDGKYDDRAKALQAKAWALAETAKA
>CP028324.1|AVR95720.1|1892726_1895615_+|translation-initiation-factor-IF-2
MASNNVAQFATELKMPADLLLTQLRSAGVEKQSASDPLSKDDKDKLLEHLRRTHGATEGTEKKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTFVQRDDLTTTAAAAASAPAAQAPVIDEAERARREEEARRQSELIARQEAELREKQERLAKLDAEKEAQAKATAAAEAEAKRRAEEEAAKAAAEKAAAEKADKAGAADAQKAEAAAAAEKKRQAEAEEAKKKAEEAAKEAAARAEATERARKAVADEVAQIKAMMSQPRRVIKAPEPAPAPVKPKVAEGTLHKPADKKPAAGATTTTDKKDDKKGDKKSIKSANVSSTWSDDAKKRGAPGGGLKGRGNAAPTGRDGWRAGGKGRGRNSHDDRESNFQAPTEAIVKEVHVPETITVAELAHKMSVKASEVIKQLMKLGQMCTINQVLDQETAMIVVEEMGHKAFAAAEDDPEALLADQGEHAHFEATPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVDTPRGMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPLVVAINKIDKPGGNLERVTQELIAEQVVPEEYGGDSPFVPVSAKTGQGIDALLENVLLQAEVLELKAPVEAPARGLVVEARLDKGRGPVATILVQSGTLKRGDVVLAGSSYGRVRAMLDENGKSVNEAGPSIPVEIQGLTEVPAAGEEAMVMADERKAREIGLFRQGKFRDVKLAKQQAAKLENMFDQMAEGEVKNLPLIVKTDVQGSQEALVGSLQKLSTSEVRVQVVHAAVGGISESDVNLAVASKAVIIGFNARADGQARKLAEANGVDIRYYNIIYDAIEEVKAALSGMLAPEKRETVTGQVEIRQVILVSKVGAIAGCLVTDGVVKRTSSVRLLRNNIVVWTGEIESLKRFKDDAKEVRAGLECGLSLKNYNDIVVGDVLEVFEVTEVARTL
>CP028324.1|AVR95721.1|1895706_1896111_+|30S-ribosome-binding-factor-RbfA
MAKHSKSIPARGLRVADQIQKDLSELIAFELKDPRVGMLTLAEVQLTPDYAHAKIYFTMLKDDPETVKNTLAGLQAASGYLRNQLGKRLHIHTLPQLHFVHDTSASRGIAMSALIDKANASRAADYEEDDKEAE
>CP028324.1|AVR95722.1|1896107_1897037_+|tRNA-pseudouridine(55)-synthase-TruB
MTQQKVKRVRDLVDGVLLLDKPVGLSSNDALIKAKRILNAKKAGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYVTTVHLGVRTDTGDTEGQVLETLPVDVTIEQIEAVLARFRGPIAQVPPMYSALKRDGKPLYEYARAGVVLEREARNVTIHQLELLKYEAPFLQLEVTCSKGTYIRVLGEDIGAALGCGAHLNALRRIGVGALRAEQMITAEQLVAHPAPLTLLAPVDALLSSFPKVDLTPALAKRFLQGQRLPLGKEPEVVTPAPYEGRVRVYEGGRLLGTGVLGEWAILAPERLIAAAQG
>CP028324.1|AVR95723.1|1897117_1897837_+|hypothetical-protein
MAHELQQRYDTMWHEAAPALARGDVACDAQLAAGNDPRRGLTLIARPGPGLASSFDAMLDTLAAIDPHQYRHPVADMHVTVLSLFTATVDYGPELARADQYRAAVAEAVRGTPPFTIDFIGVTASRGAVVAQGFPRDDTLALLRERLRGELHARGLDGSLDGRYKLVTAHSTLLRFVRPLAEPARFTQALESLRTGALGSMHVAALELVQNDWYMSSATLQRLGSYPLGLSASSLWSTQ
>CP028324.1|AVR95724.1|1898312_1898519_+|hypothetical-protein
MADMLYFFTSCAGSFYGLTDEQGYTPTFLTPRQCEHKVYFMGCRGTMTCTAKDVEAAIARQAAADAKR

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Crispr_ID: CP028324_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_7

3193063-3193156

Orphan

Consensus_repeat	Method
GCCCGTGTCCCACCTCGGGGTCAGTCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_7

>merge|CP028324|7|3193063-3193156|CRISPRCasFinder
GCCCGTGTCCCACCTCGGGGTCAGTCACCGAAACGGGACACGAGCCCGGCCGTTGCAATAGTTCAGCCCGTGTCCCACCGCGGGGTCAGTCACC

>CP028324|7|7|3193063-3193156|CRISPRCasFinder
GCCCGTGTCCCACCTCGGGGTCAGTCACC	GAAACGGGACACGAGCCCGGCCGTTGCAATAGTTCA
GCCCGTGTCCCACCGCGGGGTCAGTCACC

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR99194.1\|3195369_3195678_+\|ferredoxin	unknown	unknown	gnl\|CDD\|225945
CP028324.1\|AVR96663.1\|3203939_3205067_+\|cobalamin-biosynthesis-protein-CbiD	unknown	unknown	gnl\|CDD\|234615
CP028324.1\|AVR96664.1\|3205063_3205804_+\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|273642
CP028324.1\|AVR96661.1\|3201689_3202388_+\|cobalt-precorrin-7-(C(5))-methyltransferase	unknown	unknown	gnl\|CDD\|235609
CP028324.1\|AVR96655.1\|3188296_3189184_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP028324.1\|AVR96665.1\|3205814_3206618_+\|precorrin-4-C(11)-methyltransferase	unknown	unknown	gnl\|CDD\|225430
CP028324.1\|AVR96652.1\|3185056_3185926_-\|DUF2807-domain-containing-protein	unknown	unknown	gnl\|CDD\|371327
CP028324.1\|AVR96650.1\|3182228_3182711_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR96666.1\|3206614_3207385_+\|cobalamin-biosynthesis-protein-CbiG	unknown	unknown	gnl\|CDD\|235911
CP028324.1\|AVR96657.1\|3192582_3193047_+\|dehydratase	unknown	unknown	gnl\|CDD\|239534
CP028324.1\|AVR96659.1\|3194507_3195329_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227733
CP028324.1\|AVR96656.1\|3189180_3190167_+\|NAD-dependent-epimerase	unknown	unknown	gnl\|CDD\|223528
CP028324.1\|AVR96653.1\|3186033_3186990_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|224513
CP028324.1\|AVR96651.1\|3182753_3184979_+\|gluconolaconase	unknown	unknown	gnl\|CDD\|271323
CP028324.1\|AVR96654.1\|3187131_3188121_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP028324.1\|AVR96658.1\|3194331_3194517_+\|cobalt-transporter	unknown	unknown	gnl\|CDD\|370526
CP028324.1\|AVR96649.1\|3181135_3182251_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR96648.1\|3179349_3180978_-\|catalase	unknown	unknown	gnl\|CDD\|163710
CP028324.1\|AVR96662.1\|3202384_3203953_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376825
CP028324.1\|AVR96660.1\|3195674_3199757_+\|cobaltochelatase-subunit-CobN	unknown	unknown	gnl\|CDD\|235663

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR99194.1\|3195369_3195678_+\|ferredoxin	gnl\|CDD\|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	1.64557e-21
CP028324.1\|AVR96663.1\|3203939_3205067_+\|cobalamin-biosynthesis-protein-CbiD	gnl\|CDD\|234615	PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed.	6.07271e-118
CP028324.1\|AVR96664.1\|3205063_3205804_+\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|273642	TIGR01467, Probable_cobalt-precorrin-2_C20-methyltransferase, precorrin-2 C(20)-methyltransferase. This model represents precorrin-2 C(20)-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	8.59179e-77
CP028324.1\|AVR96661.1\|3201689_3202388_+\|cobalt-precorrin-7-(C(5))-methyltransferase	gnl\|CDD\|235609	PRK05787, PRK05787, cobalt-precorrin-7 (C(5))-methyltransferase.	9.50554e-84
CP028324.1\|AVR96655.1\|3188296_3189184_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.31297e-34
CP028324.1\|AVR96665.1\|3205814_3206618_+\|precorrin-4-C(11)-methyltransferase	gnl\|CDD\|225430	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].	3.17281e-127
CP028324.1\|AVR96652.1\|3185056_3185926_-\|DUF2807-domain-containing-protein	gnl\|CDD\|371327	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain. This bacterial family of proteins shows structural similarity to other pectin lyase families. Although structures from this family align with acetyl-transferases, there is no conservation of catalytic residues found. It is likely that the function is one of cell-adhesion. In Structure 3jx8, it is interesting to note that the sequence of contains several well defined sequence repeats, centred around GSG motifs defining the tight beta turn between the two sheets of the super-helix; there are 8 such repeats in the C-terminal half of the protein, which could be grouped into 4 repeats of two. It seems likely that this family belongs to the superfamily of trimeric auto-transporter adhesins (TAAs), which are important virulence factors in Gram-negative pathogens. In the case of Parabacteroides distasonis, which is a component of the normal distal human gut microbiota, TAA-like complexes probably modulate adherence to the host (information derived from TOPSAN).	3.0845e-24
CP028324.1\|AVR96666.1\|3206614_3207385_+\|cobalamin-biosynthesis-protein-CbiG	gnl\|CDD\|235911	PRK07027, PRK07027, cobalamin biosynthesis protein CbiG; Provisional.	3.70965e-47
CP028324.1\|AVR96657.1\|3192582_3193047_+\|dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	2.33586e-67
CP028324.1\|AVR96659.1\|3194507_3195329_+\|hypothetical-protein	gnl\|CDD\|227733	COG5446, COG5446, Predicted integral membrane protein [Function unknown].	4.26411e-58
CP028324.1\|AVR96656.1\|3189180_3190167_+\|NAD-dependent-epimerase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	6.47667e-45
CP028324.1\|AVR96653.1\|3186033_3186990_-\|diacylglycerol-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.14208e-30
CP028324.1\|AVR96651.1\|3182753_3184979_+\|gluconolaconase	gnl\|CDD\|271323	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins. This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	1.19761e-111
CP028324.1\|AVR96654.1\|3187131_3188121_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.41567e-41
CP028324.1\|AVR96658.1\|3194331_3194517_+\|cobalt-transporter	gnl\|CDD\|370526	pfam09489, CbtB, Probable cobalt transporter subunit (CbtB). This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.	4.72117e-12
CP028324.1\|AVR96648.1\|3179349_3180978_-\|catalase	gnl\|CDD\|163710	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.	0
CP028324.1\|AVR96662.1\|3202384_3203953_+\|hypothetical-protein	gnl\|CDD\|376825	pfam02570, CbiC, Precorrin-8X methylmutase. This is a family Precorrin-8X methylmutases also known as Precorrin isomerase, CbiC/CobH, EC:5.4.1.2. This enzyme catalyzes the reaction: Precorrin-8X <=> hydrogenobyrinate. This enzyme is part of the Cobalamin (vitamin B12) biosynthetic pathway and catalyzes a methyl rearrangement.	1.05981e-75
CP028324.1\|AVR96660.1\|3195674_3199757_+\|cobaltochelatase-subunit-CobN	gnl\|CDD\|235663	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.	0

>CP028324.1|AVR96657.1|3192582_3193047_+|dehydratase
MDAQPVLLDTIPALEAVVGREVALSRWFTIDQARITAFADVTDDHQWIHLDAERAQRESPYGGTVAHGFLTIALLPAMLASAVSLGEARLTVNYGCNKVRFPAAVPAGSRIRGRFTVQSVEALADCTQLVWLVTMESEAGGKPVCVAEFVMRRY
>CP028324.1|AVR96656.1|3189180_3190167_+|NAD-dependent-epimerase
MKVLVTGSSGHLGEALVRVLAAAGHEPVGLDLLASPFTSVVASIGDAGAVRAAMRGAHGVIHAATLHKPHVATHTRGQFVATNVQGTLNVLEAALEEGVGAFVMTSSTSVFGAALSPPPGAPAAWVDETLQPVPKNIYGVTKLAAEQLCELFARTQALPVVVLRTARFFPEQDEDPALRGAYSDANIKVNELLNRRADIEDIVEAHLLALERAGRIGFGRYIVSATTPLRRADLAALRTDAAAVLAQRAPQALAEYARRGWSPFATLDRVYDNALARQALGWQPRHDFHSVVARLVQLPLDADIRSPLARVIGSKGYHDALTGRYPFV
>CP028324.1|AVR96655.1|3188296_3189184_+|LysR-family-transcriptional-regulator
MADDFDWNDIPLVLALARSGSMSAAGRQLGVDASTISRRVAAAEKALNLRLFTRATTGYQLTDAGQVFVERGEAVYGSVQSMLLASTREAETIAGTVRISAIDFLFDHWLVRHVGALCARHPALEVNLVADNQNVSFARREADFALRLAPPADDAAVLMRRLGEIGWAVYGAPAYADVPREAWGTQPWVALEEALAHVPEMRWLARLAPRPRQPLRVNSLSTMVNACRAGVGMALLPCIVGADEGLLRLSGAEVTRELWLLSHRDAVSIGRFKLVAGWLAQLFDDSRAALCGAVR
>CP028324.1|AVR96654.1|3187131_3188121_-|alpha/beta-hydrolase
MSTQNANQFNLSRRGALLGGAGLAAAAVSAAAAVVLPAIAEAAPAAGPKGPLRKSASTITTRDGVELYYKDWGHGQPIVFSHGWPLNSDSWESQMLHLANHGFRVIAHDRRGHGRSSQPWEGNDMDHYADDLAQLIEALDLKDAILVGFSTGGGEVARYVGRHGTKRVAKLALVSAVPPLMLKTADNPGGLPLEVFDGIRNAQIANRSQLYLDIPSGPFYGFNRPGAKLSQGLVQSWWMQGMMGGHKNTLDSIKAFSETDFRADLKKFDKPTLVIHGDDDQVVPIDAAGRASAAIVKHAKLIVYPGAPHGLTDTHKDQVNADLLAFARS
>CP028324.1|AVR96653.1|3186033_3186990_-|diacylglycerol-kinase
MPTTTPAPDAPLYIVLNAGSGAAETDERRAAIEAVLRAAGRRFHIELVDDPERIDQQAKAQAERARADGAILVAAGGDGTINAVARQAVEHGCPFGALPQGTFNYFGRTHGIPQDLTDAVHALLRASVRPVQIGTVNGRIFLVNASIGLYPKLLEEREHDKRQFGRSRLVAALSALKTLVLPHRRLRLSLEAEGKEIHLRTSTLFVGNNRLQMEQVGLTDVTPAVADGELAALAPKPVGRLRMLLLMARGALGLLADTDDLVAFGFRRMTVRTPRYGRKRLKAAVDGEVLHLTAPLQFEALAGKLLLLVPAPGDAVSG
>CP028324.1|AVR96652.1|3185056_3185926_-|DUF2807-domain-containing-protein
MRPPLSAAILVTATLLAGCVIVVPDGDGHWSSERPAVQGDGRIASASRPVAALPALEIEGRRRLDMQVDVQVGGAPALTIEADSNLLEHVHTDVRGDTLHVWSDSDTSASRPVRIRYTVPRLERLETSGYAGTQVAGLDGGSLKIVQRGSGRIELRGRVDRLEAVNSGSGSLLADALDAGDTRVTMNGSGRIHLGTVHGEALRATLYGSGGLTARGEVRAADVTVHGSGAARLAGLRSQRADLAAHGSGDIAIAVSGQVSSRTDGSGTITVYGDPLERSVLGKRTTFVR
>CP028324.1|AVR96651.1|3182753_3184979_+|gluconolaconase
MNRKFLIAALAGAGVLAGGTAVILVNRSTAPAPAPAKSTAILTPRQASTGRFWQARVTPLAGAGTAGFADGPGAAARFSDPFGVAVDARGTIYIADGGDNNRIRRLGADGTVATFAGGTEGLRDGNGAAAAFHTPSALALDHLGNLYVADTGNHAIRKIAPDGSVTTLAGNGQPGTADGKGATARFNGPVGVAVDDAGIVYVADTYNDRIRRIAPDGSVTTIAGGDRPGDADGHGAAAGFDTPSGIAVTPAGILFVADTGNHAVRRIDPDGRVTTVARAPEGERRPVLWRPSAIAATRDGWLYVATGGGGRIVQIAPDGQYQPLGDADQRVEPGYGSDGSVQLAAPRGLAVQRDGALVASDALGFKVVRLAPATGPAPAMHAALASVPAAAPRPQRMAWPVLPQDAPHEVVGLMGEVRGSFDGESRDHFHMGLDVRADVGEAVVAMVPAKVTDPFANWGYGTLSEGLALGTLSYIHMKVGRDRRDAALDQRFQLLRNGRGKPERVRVPRGTRFAAGERLGTINAMAHVHLDYYPDGTVANPLTLPLTGLRDTVAPRIQSILLLADGGRRLPGQRGEAAPRKKKGRGKAKEAAEAPVKGPVKVPRGLGKIDIVVDAWDQMDGNLARRRLGLYKLGYQLLRPDGSALAGWQQPRITQVYDRLPRNQEAVKVVYAPTSGITVYGSKATHFAYAVHNTLADGRVSPGAWDVSELAPGLYTLRIYAADYAGNVAVEGRDLAIEVVE
>CP028324.1|AVR96650.1|3182228_3182711_+|hypothetical-protein
MSPALLYDITPRAGYRITGFSLAATVQGTLVAGGGDAPGFAFNYITLSYQVQHPHGAEGGVLSSNFQQEHQMTLGAPLQWLDTPSGFHLSSYVNLVANGGFVPDPAGGEPSWSQSIAGVTMRDVTLTFTVSPVPEPQTWLMLLSGLAAVSAAALRSRKRC
>CP028324.1|AVR96649.1|3181135_3182251_+|hypothetical-protein
MQSISFRPLALAALLCAGAAHADVPYVATSAFTLQGYDHYPDSVVNVLSDTGRSITLGLPTFAADISTGSADSFQGTDDSAAVVSYALALYEIRPNAGYRITGFKLSATAQGMLVAGAGDWPGTAYNYVWLDYDIYHWDGDKGSTQVSDLQGEQQVALASRPLALDTQFSIALGGYTMLGAYGGYVYDPLGGEPTRMQSLADLNLRDVTLTFTVSAVPEPQTWLLLLGASVSSARWRRAAGSGRRSAKLIIAAGGRAGLPGAASSSAVLPSHRHRSRHASFIATATPSSTHTSRAAVRRRRPRRGAVCRDQRLHTAGPRGLSRQRGQCAVRYGAGRHAVAADHGGTQHGGGRFDGQSERLDERQRVAGAAV
>CP028324.1|AVR96648.1|3179349_3180978_-|catalase
MTDKPNSQASKQDERPVLTTRQGHPVRDNQALRSVGERGPATLENYQFIEKITHFDRERIPERVVHARGAGAHGWFEAYGKIGDEPASNYTRARVLNETGVKTPVFVRFSTVIGGKDSPETARDPRGFAVKLKTVEGNWDLVGNNLKVFFIRDAIKFPDMIHAFKPDPVTNRQEPWRFYDFVSQSPEALHMVTWVKSPWGIPANYREMEGSGVNTYKLVNDAGVAHLVKFHWQPKQGVRNLTSQEAAAIQAGDTGHATRDLYEAIERGDYPEWEFCVQIMSDGDHPELDFDPLDDTKRWPEDQFPLLPVGRMVLDRNPDNFFAETEQSAFGTGVLVDGIDFSDDKMLQGRTLSYSDTQRYRVGPNYLQLPINAPQQGARARTNQRDGQMAYYVDDAGGNKHINYEPSGLGGLREADRNGKEYHQWVEGHLGRYQTSRTLDDYRQAGDRYRTFEDWERDDLVKNLADDLRQCPEPIALRMVWHFWHCDEDYGRRVAEAAGIDLARAKALPPLPGKAAPHQVRQAATYTDGAREGVERETEVSK
>CP028324.1|AVR96658.1|3194331_3194517_+|cobalt-transporter
MSPVTSTSVHVAPLALKDKLLPALGAAALGIVLLFGAGFAPLEALHNAAHDSRHSAGFPCH
>CP028324.1|AVR96659.1|3194507_3195329_+|hypothetical-protein
MPLSPAAAPARRPGVFNRIVATAAGAGIVAGLLLTGMQHLQVTELIRTAETYEAAAQAAPVAAHAHDHADEHEHGNEHAHAGAPEHEHAAAAAHEHRGEEHHHGGWEPAPGGERLFYTVLANISMAVGYALLLAAALTLRGKPVDWRAGLLWGGAAYLVFFVAPSLGLPPELPGTQAAPVVARQSWWIATAGATATALALLAWSRHWALKLAALALLAVPHLVGAPQPAVHGAVAPAALAREFVVASALANAAFWLALGALTGWLHARFNRAG
>CP028324.1|AVR99194.1|3195369_3195678_+|ferredoxin
MCVGPRCTSTEGRAQAVFERMGEMIDARPELAVKRTRTHCMVACKFEGPVLVVYPEGVWYQRVDEAAAARIVDEHLVGGREVADLIFHRLGLGDTCEPEPKP
>CP028324.1|AVR96660.1|3195674_3199757_+|cobaltochelatase-subunit-CobN
MNELPRIALLTHASNDLTVLHHARTQLPAGFGAVAGVNLQERGEGTPPLAALLDGELRGARVIVVRVLGRLGGVPGFAELAEAARRQGRHLLVVSGTGEPDPELAAVSTVGAGVTQMALAYFQAGGGANLAQLLRYLSDHLLLSGHGFEPAQPLPEHGIYHPDLAPGASLADWQALRDRARPAVGIVFYRAHWMSGNTRFVDALLAALEARGLDVLPVFTSSLRAADGAAMPAALRYFGDGNAAHVEVLINTTSFAMGEITAGGPTPAGWSVRVLETLDVPVLQAITSGMTLPQWQQSARGLNPLDTAMNVVLPEFDGRIITVPLSFKERAAGLPGEAVEYAPLADRAARIAGIAARWARLKRLPNRDKRVAFMFTNSSSKAAQIGNAVGLDAPASLMRILAALQAAGYDVRDLPADGTTLIHDLVARCSYDNLHVTEQQLAQAAGRVPAARYAEWFAELPLALQEKMLAQWGAPPGAAYVHDGHLALAGIELGNAFVALQPPRGYGMDPDAIYHQPDLPPTHHYYALYRWLRDEWRADAIVHVGKHGTMEWLPGKGVGLSEECFPDALLGDLPLFYPFIINDPGEGSQAKRRAHAVVVDHLTPPMTTADTYGALAQLTQLVDEYYQVEVLDPAKLPLLQQQIWELVKQTNLDADMRMRLLHHDHEHDHDHDHEHGHGHHHHAHGHHHDHDHDHDHDHDHDHDGELPAALAEMGGSDVAHLIEDLDGYLCELGSAQIRDGLHVLGRCPDDAQMPDMLAALTRLPNQDVPGLQGAVAQLFGLTVDMLLAPSAGRINAAPALARLASRAVVSRANALEAVDLLCRRLFEELGQAGYATEAIDAVLDRVFGTLDDGDSVAPRLQPAARAKASVVTQLGRPRAKPAAVAAAKPVAAGPARFDELRRVLDFACRELVPKLRRASDEIDNLVAGLAGRYVPAGPSGSPTRGMAHILPTGRNFYSVDPRSVPSQSAWRVGQQLAREVLERYRRETGDWPESVAVSVWGTSAMRTHGDDVAQILALLGVRPVWRHESRQVCGIEVVPLAELGRPRIDVTTRISGFFRDAFPQLIELVDDAVQRVIQLDEPATDNFVRKHYLAELAQGIGAGLDEPEAARRAGYRVFGAKPGSYGAGILPLVQQRNWEGDADFAEAYVNWGGYAYGRGSQGTDQRDAFRTRLAGVQVALHNQDNREHDIFDSDDYLQFHGGMIATIRALSGQQPRHYFGDSHDPSRAQVRDLKEETLRVFRSRVVNPKWLASIQRHGYKGGLELTATVDYLFGYDATAQVMDDWMYEDVAQSYAFDPAMQRFLQEANPWAQNAITERLLEAAGRGMWAEPKPDTLERLRQLYLDSEALLEARGETARGS
>CP028324.1|AVR96661.1|3201689_3202388_+|cobalt-precorrin-7-(C(5))-methyltransferase
MIVCIGAGPGDTGYLTQRGAELIRNADVVAGFDAVLNVVRDLIPANAQVIGMGYRDQVAQLDKVALEHHAGKRCVVVFMGDIHFSGFQYLERVERACGHPVESLPGISSAQILASRARVCFDETTFITFHRRGDLTPFKRHLVRVLEDQRNAIVIPCPWDEARSFMPWHIAAYLMEQGIPAHHPVEVWENLTRGEAEWHGTLAECAEHRCSDMSIMLIRTLAPMASQIEPAP
>CP028324.1|AVR96662.1|3202384_3203953_+|hypothetical-protein
MSGTTERLGIVVAGHGSRDPDAVREFEALVELIRARAPGDIVTHGYLEFASPTIADAAVANVNAGARQIALVPGVLLAARHAKNDMPAEMLALARDFPDVDFHFGAPMSLDPKLLQLAQERIVAAEAASPHTVRRDETCLVVVGRGTTDPDANGEVAKLARMLEEGMGFGAAYVCYSGTAQPLVADGLRRAALLGYRRMVVLPFFLFDGVLVKRIYAAADALAEREPGIEVLKASYFGVHPLVADVMIERAREAVAGRAAMNCSLCKYRVQIVGFEQQVGEPQRAHHVAVRGLLGKETPPAAVTPVYNTYVPHPIEAESFRIIAEGRDWSTFPPEQLTVLQRIVHTSGDFNAVDDFYFSAGAIDSGIRALLRCRRVVTDVTMVQTGLKRALLEELGIDTWCGVHDRETHLMAEQYGITRSAAGIRRAWQKFGNDVLVAIGDAPTAIAEAARLIREHGWRPQLVIGLPVGFVGTRESKDELRRCLQVPRITNSGTRGGSPWAASVVNGLMIDALNGLASGGAG
>CP028324.1|AVR96663.1|3203939_3205067_+|cobalamin-biosynthesis-protein-CbiD
MAPAERRPFDLAIPASNGLRRGRTTGTCATAAVKAALHLLLDGELKREVRVSLPDGVHYLVVPIMRVRRQGERVRAEVLKDGGDDPDSTHGATIFAEVARNDVGTVRFFAGRGVGTATAPGLRVAVGEPAINPVPRQMMRQAVAEVAETDAGFDLTIGCEEGETIAPKTFNPRLGIVGGISILGTSGIVEPMSLATWIASIEVYVRVALAGGPARVAYLPGKIGREYARDVLGLPDARSVQIANFLGDALDFTERALREGGQELEELWLAGHPGKLAKVLDGYWDTHSSRSTMAMGGVARVAAEWGYGPHTVRRIEEANTVEAAMEILNEAGDASAFWREMEVRIGALAHARVPSVRRLEVRLFDLAGNLLGARP
>CP028324.1|AVR96664.1|3205063_3205804_+|precorrin-2-C(20)-methyltransferase
MTGTLIGTFYGVGVGPGPAGYLPVAALEALRAADLIYAPRARGVADSVALQCLAGTGFTPAPDKLREIEFNMDPDRSVLSEHYAQLADAIALELRAGRAVAYLTIGDSMTYSTYGYVLAALRARIPDLPQRTFPGVTSYAAAAAALAWPLGEGKERVLILPCPESADELRREIETHDIVVLMKVGARLPWVLDLLREMGIAQHCAFARRIGLPGELLSTDVGGLVADDAMGYLATLLVRRKPSVQR
>CP028324.1|AVR96665.1|3205814_3206618_+|precorrin-4-C(11)-methyltransferase
MKVYFIGAGPGAADLITLRGARLLGSVDMVLYAGSLVPVEMLQHCRPDTELIDTAQLDLEQQQACYVRARDAGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEIVPGVSSFTAAAAAIGAELTKPEVSQSVILTRVSGRASAVPELESIARLAEHRATMCIFLSGPHLKKIVGDLLLHYPPGTPVRLVYRATWPEQRVYEGTLGTVLEETKRGAWNLTTMMLVGAALDRGVAAESSLYSKDFTHLFRVVKKQGKEQDQEPEQERA
>CP028324.1|AVR96666.1|3206614_3207385_+|cobalamin-biosynthesis-protein-CbiG
MTPGPGIWLVRTEAEPLARVLQARLGGTIHRPWLQGDVAQKTLFAQCWREHAQWIVVAATGIAVRFLSGLPADKHSDPAVVVLDEAGRHAIALLGGHEGGANALAYRVANAVGAVPVVTTATEAVKPLTVGIGCRKGVPAERIAAAVLHALGSAGLALDAVREVATVDLKGEEAGLLAFCEQHRLPLRVLARAELAARPWVSRPSDWVRQNVGLDGVCEPAALVASPRGALVVPKTSLDGVAVAVVMDKNDWMDKQ

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Crispr_ID: CP028324_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_8

3837880-3837983

Unclear

Consensus_repeat	Method
CCGTTGCAGCGGCCGGGCTCGTGTCCCGTT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP028324_8

>merge|CP028324|8|3837880-3837983|CRISPRCasFinder
CCGTTGCAGCGGCCGGGCTCGTGTCCCGTTTTGGTGACTGACACCGTGGTGGGACACGGCCCCGGCCATAGCGGCCGTTGCAGCGGCCGAGCTCGTGTCCCGTT

>CP028324|8|8|3837880-3837983|CRISPRCasFinder
CCGTTGCAGCGGCCGGGCTCGTGTCCCGTT	TTGGTGACTGACACCGTGGTGGGACACGGCCCCGGCCATAGCGG
CCGTTGCAGCGGCCGAGCTCGTGTCCCGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR97100.1\|3849782_3855281_+\|ATP-dependent-DNA-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224122
CP028324.1\|AVR97085.1\|3829425_3829869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369642
CP028324.1\|AVR97083.1\|3827509_3827704_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97096.1\|3843574_3844474_-\|Lateral-flagellin	unknown	unknown	gnl\|CDD\|236344
CP028324.1\|AVR97091.1\|3835815_3837489_-\|sodium-transporter	unknown	unknown	gnl\|CDD\|271360
CP028324.1\|AVR97084.1\|3828541_3829432_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369642
CP028324.1\|AVR97094.1\|3840587_3841373_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224748
CP028324.1\|AVR97090.1\|3834645_3835713_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963
CP028324.1\|AVR99264.1\|3830772_3831192_+\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|274364
CP028324.1\|AVR97099.1\|3849273_3849669_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97098.1\|3845830_3846328_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97095.1\|3842836_3843472_+\|chloramphenicol-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
CP028324.1\|AVR97088.1\|3832760_3833195_-\|stress-induced-protein	unknown	unknown	gnl\|CDD\|237171
CP028324.1\|AVR97087.1\|3831685_3832657_+\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|372298
CP028324.1\|AVR97097.1\|3844634_3845840_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275057
CP028324.1\|AVR97092.1\|3838041_3839244_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349914
CP028324.1\|AVR97089.1\|3833475_3834633_-\|galactokinase	unknown	unknown	gnl\|CDD\|179937
CP028324.1\|AVR99265.1\|3841593_3841935_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97086.1\|3830110_3830506_-\|stress-induced-protein	unknown	unknown	unknown
CP028324.1\|AVR97093.1\|3839457_3840618_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224748

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR97085.1\|3829425_3829869_-\|hypothetical-protein	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	0.00043834
CP028324.1\|AVR97091.1\|3835815_3837489_-\|sodium-transporter	gnl\|CDD\|271360	cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain. vSGLT transports D-galactose, D-glucose, and alpha-D-fucose, with a sugar specificity in the order of D-galactose >D-fucose >D-glucose. It transports one Na+ ion for each sugar molecule, and appears to function as a monomer. vSGLT has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
CP028324.1\|AVR97084.1\|3828541_3829432_-\|hypothetical-protein	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	4.45366e-27
CP028324.1\|AVR97094.1\|3840587_3841373_-\|hypothetical-protein	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	7.8955e-39
CP028324.1\|AVR97090.1\|3834645_3835713_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
CP028324.1\|AVR99264.1\|3830772_3831192_+\|hydroxyisourate-hydrolase	gnl\|CDD\|274364	TIGR02962, Probable_5-hydroxyisourate_hydrolase_R09H10.3, hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	2.73863e-52
CP028324.1\|AVR97095.1\|3842836_3843472_+\|chloramphenicol-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	2.98928e-71
CP028324.1\|AVR97088.1\|3832760_3833195_-\|stress-induced-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.00198766
CP028324.1\|AVR97087.1\|3831685_3832657_+\|IS1595-family-transposase	gnl\|CDD\|372298	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.	1.66093e-15
CP028324.1\|AVR97097.1\|3844634_3845840_-\|hypothetical-protein	gnl\|CDD\|275057	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A. Members of this protein family are found, so far, exclusively in the genus Acinetobacter. Members average just over 600 amino acids in length, including a 22-amino acid C-terminal putative protein sorting recognition sequence, GlyGly-CTERM (TIGR03501). The GlyGly-CTERM signal always co-occurs with a subfamily of the rhomboid family intramembrane serine proteases called rhombosortase (TIGR03902). Members occur paired with a second rhombosortase target, with which it also shares an N-terminal motif CSLREA. This protein is designated Acinetobacter rhombotarget A (rbtA).	0.00198072
CP028324.1\|AVR97092.1\|3838041_3839244_-\|amidohydrolase	gnl\|CDD\|349914	cd05664, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, Uncharacterized subfamily of proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as in the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
CP028324.1\|AVR97089.1\|3833475_3834633_-\|galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	0
CP028324.1\|AVR97100.1\|3849782_3855281_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224122	COG1201, Lhr, Lhr-like helicases [General function prediction only].	0
CP028324.1\|AVR97096.1\|3843574_3844474_-\|Lateral-flagellin	gnl\|CDD\|236344	PRK08869, PRK08869, polar flagellin E.	3.74225e-53
CP028324.1\|AVR97093.1\|3839457_3840618_-\|hypothetical-protein	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.43569e-14

>CP028324.1|AVR97091.1|3835815_3837489_-|sodium-transporter
MNTFSTLDSVVFLVYFVIVAAYGLWVYYRRRKTTSGQASHDYFLAEGSLTWWAIGASLIASNISAEQFIGMSGSGYKIGMAIAVYELMAAATLVIVAVFFMPVYLKNRIYTMPQFLEQRYGKAVATTMALFWLGLYVVVNLTSILYLGALAISSVAGLNVFACMLFLAVFAAIITLGGMKVIGYTDVIQVLCLVVGGLVTTWIALDLVAALAGGQGAVVGASELFKRAGGHFDMVLERGNPNYMDLPGLSTLIGGMVIVNLNYWGCNQYITQRALGADLPTARKGLLFAAFLKLLMPVIVVLPGIAAFALDQSGALGDAMRAGGELNPDRAYPTLLALLPSGLKGVAFAALTAAVVASLAGKANSIATIFTLDIYKQHFNKEASEQRMVWIGRVSVVFAIALAVLIAPFLGIDKKGGFQYIQEYTGFVSPGILAMFLLGFFWRKTTPAAAMFATIGGLVFSVILKFLPGMLDLGFLAPIGFAVDNGAGVYEIPFLDRMFIVFCLVVAGMVLISTLGRQDGSVRRMQVDRTLFRVDGGFALGAAVIGVLLALIYGTLW
>CP028324.1|AVR97090.1|3834645_3835713_-|galactose-1-phosphate-uridylyltransferase
MFNPSDHPHRRFNPLTGEWVLVSPHRAKRPWQGAQEAPDNSPKPSHDPTCYLCAGNTRVNGVKNPDYTGTYVFDNDFAALMPDTPDAAPDTDPLMRTMSVRGTSRVICFSPDHSATLPQLSAAAIEQVIDTWCAQAEELGRSYRWVQVFENKGAAMGCSNPHPHGQIWANSFLPNLPAAEDREQNAYQAKHGRSLLLDYAEREADGERVVVQSAFWLAVVPYWASWPFETLLLPRFPVQRLEQLTQPQRADLAVVLKRLTTRYDNLFKTSFPYSMGWHGAPYEQTAGAQPSPAWQLHAHFYPPLLRSATVRKFMVGFEMLAEAQRDLTPEQAAAQLRTQPEVHYLQPNDKQEQDE
>CP028324.1|AVR97089.1|3833475_3834633_-|galactokinase
MHPGARARAAFAAVFGTNPAVVVQAPGRVNLIGEHTDYNDGLVLPCAIDYRTVIAASERADRTVRIVAADYANAIDEFSLDAPIERLAEPMWANYVRGVIDVLVKRGLPMRGLDLAISGNVPQGAGLSSSASLSVAVGRVFATLPGFEGLSPIDIALIAQQAENDFVGCKCGNMDQIISACGVEGHALLIDCRSLATRPVPIPAGAAIMIFHSHVERGLVDSEYNTRRHQCEAVARHFGVRALRDVDLAMLEARGGELDPLALRRARHVVTENARVEAAGEALAAGDLARMGELMAASHVSMRDDFEITVPLIDQLVEIVGRVIGRSGGVRMTGGGFGGCVVALVPAEQVEAVRAAVAREYRGPAGQQATVYVCRAAAGAGVVTV
>CP028324.1|AVR97088.1|3832760_3833195_-|stress-induced-protein
MASNRNNNPQGNNQFTKDSGNSQSGNRGNSQSGNRGNSQSGDTSNRGFASMDPERQREIASEGGRAAHASGNAHEFTSEEARRAGSMSHKNDGNRQSGNEGNGGGRGGNQGGGNQGGNQGGRGTQGGTPEQHAQAGRQSHKNDR
>CP028324.1|AVR97087.1|3831685_3832657_+|IS1595-family-transposase
MDSRQFQAMQAQVRQLLVELTGKQVDELREMFDRCTSLADCLAIIEARGNRMRRCPHCQGERLYRHGVFYGLQRYRCRECGASFNALTGTPLAFIRLREKWLPFLQCMLNSMTVRGAAQAVGIHRNTSFRWRHRFTMMAKDARALPLGGIVEADETYIVESQKGSRNLTRPARRRGGTASHRGPGKEHDCILVACDRTGKASDFIAGRGPVTASQLQQCLPPVLAPGVLLATDGAVAYKAFARATGIQHRAVNVAAGVRVVDEVIHVQTVNSYHSRFKGWLRRFHGVASKYLPNYLGWRHALDAGRVPTPQHFLRAVLFLLVI
>CP028324.1|AVR99264.1|3830772_3831192_+|hydroxyisourate-hydrolase
MTTSLFRSVLPTVFALALAFGAQAQPANPLSVHVLDMQTGEPTAGIAVTLEQRRGDSWRELASASTDAQGRIAALYPAGQPFSKGDYRIVFRTGEHYARTGQASFFPRIPVEFTVTATERHYHIPLLLSPFGYSTYRGN
>CP028324.1|AVR97086.1|3830110_3830506_-|stress-induced-protein
MASNRNNNPQGNNQFTKNEGNSQSGNRGNSQSGDTSNRGFASMDPQRQREIASEGGRAAHAAGTAHEFTSEEARRAGSMSHKNDGNSQSGNGSGNRGGNDAGNNAGNGGTRGGTPEQHAQAGRQSHKNDKR
>CP028324.1|AVR97085.1|3829425_3829869_-|hypothetical-protein
MLLTLAAALPAALAQHTKLEDPIPAPLPNSPASVTLRPLLDGLVSPVAATVAPGEPGNLYVVDQIGIVWRAPAGPQAVQKNARTSFLDVRERLVRLGSRDERGLLGLAFHPDYARNGRLYTYTSEPAGPAPDFSTQPPGSRRTTRAC
>CP028324.1|AVR97084.1|3828541_3829432_-|hypothetical-protein
MLTEWRASGGTVDPASARVLMRIDQPQSNHNAGALAFGPDNLLYIALGDGGAGDDQGPGHAPEGNGQSLAPGNVLGKILRIDPLGNNAANGAYGIPADNPFVGRAGADEIYALGLRNPFRMAFGPDGTLWAGDVGQGAIEEVNHIVAGGNYGWPVKEGSFLFDANGTGPGFVYAHSPNVPAGLIDPVAEYDHADGAGAPVARQAVIGGYVYTGASIAALRGQYVFADYIGSSGSGTLLTLGARNEVQKLVAQRREPLGLAVLGMAQDAAGELYVLASAGGTLTGTSGVVLRVAPAR
>CP028324.1|AVR97083.1|3827509_3827704_+|hypothetical-protein
MMESSNRQGMADGGAQMSQPAPSGEGHADLLELFGRWEVLADSDSDPRAGAALTPSYSGAARPR
>CP028324.1|AVR97092.1|3838041_3839244_-|amidohydrolase
MYPWLDGVYKDLHAHPEIAFQEVRTAARLAGEMRKLGFAVTEKVGRTGIVAVLRNGAGPTVLVRTELDGLPMEEKTGLPYASRARTSSDGRDSFVTHSCGHDVHMASWLGAARTLVELKERWRGTLVFIGQPAEETVSGAKAMLDDGLLKRFPKPDYAFALHSWPLAYGTVGYNSGPVSSNSDAIEIVFKGRGGHGSAPDKALDPIAIAARFVVDVQTVVSREKDPKEFGVVTIGAIQGGTVGNIIPDTVQVRGTIRSYSPDVRTKLLDGVRRVANASAAMAGAPAPDVQLTPGGAAIVNDEALVQRTEAVFQDAFGKANAVRVPAMTASEDFSQFAEQGIPSMFFFTGVYDPNAVAEAQRPGGKPVAFNHSPFYAPVPEPSIKTAVQAMSLAVLNVLQR
>CP028324.1|AVR97093.1|3839457_3840618_-|hypothetical-protein
MLVPTVGAALIILFARPGTLAHQLLGLRAFVLIGLVSYSAYLWHQPALAFYRLYFVDDPSQAVAIALIAAVFVLAYLTYRFVETPFRSHGALRLNRRQVFAFALVGLAVLAAVGFSGHHWRGFPTRNEQTLRLGQNGGLSFACSGADLEDPRCKSKPDPKVILWGDSYAMHLGQALADVYSDKGLWQMTLSSCPPVPGFTGAPVKTTVTCEVFNDRVINKLRTLPHPEQYTLVISSISNLSAPLYQPNSSNTFDELSKLGYKLVLVSQTPRYPGTKKCLKMHVRSDGDFSSCTFDFDQTDNRTFFDQLRAFSAVHNTQFVDLSRLFCDDNQRCSIQKDGVLLVRDIGHMSTESTGKLATFLRSQLRPSEQVAGAQPAVTKPAAQAH
>CP028324.1|AVR97094.1|3840587_3841373_-|hypothetical-protein
MDYRREIDGLRALAVLPVILFHAGFSAFSGGFVGVDVFFVISGYLITTIILAELARGDFSIAKFYERRARRILPAMFVVILLCLPVAWVMLDPFEMKEFSQSIFATSLFSSNFYFFLKTGYFDISAELKPLLHTWSLAVEEHYYILFPLAIMPLWKHGRKLILPVFATIFVASLLFAQWGVMHHPSMAFYLLPARAWEIMLGTLCAILLSRNEQRMLAAPMWVKQLGSLAGVALIVLAIFAFDGKTLAPDRRCWCPRWAPP
>CP028324.1|AVR99265.1|3841593_3841935_+|hypothetical-protein
MSTDTDITLSGPFKASDSSGQEREIKAIRIFDEGYGIIDVYVDFARPLDGAHKDSVLLRQIVERLRALGYRGPDFGLGDAGLQESKLIVLEAPEEFAAFAKQHGWKNLAEDFD
>CP028324.1|AVR97095.1|3842836_3843472_+|chloramphenicol-acetyltransferase
MHGPDPDHPFPMAGFPQVCYLKNVVDTPNIVIGDYTYYDDPDGPEAFLRNVLYHFPFIGDTLRIGKFCALARGVKFIMNGANHQMDGISTYPFFIFGNGWDSAQPAPGELPYKGDTVIGNDVWIGYDALVMPGVTIGDGAIVAARSVVTADVPPYTIVGGNPARPLRARFDAGTAARLVALAWWDRPAEWITAHLPLIRGGDVAALERAAG
>CP028324.1|AVR97096.1|3843574_3844474_-|Lateral-flagellin
MLSLHTNNAALSAQNSLTRTQGQLSTSMTRLSTGYRINSAMDDAAGLQIATRLKTQTSGMQVAMRNTQNSISLMQTAEGALDETTNILNRMKDLATQAADGSSTADDQAAMQAEFDSLSNELGNIMTNTKFGGTNLMTDGTGKLSTTITFQIGSDKDEKMTADFTTEMSAVHTKIKAAATQYDGAAATAATTAGTEISGADASTGATNANATIKNLSDAIDAVGTVRSKLGAISNRLDHVYNNLSSISTNTKNASGRIMDVDFATESANMTSNQMLLQAGTAMLKQSNSQSSLVLSLLQ
>CP028324.1|AVR97097.1|3844634_3845840_-|hypothetical-protein
MLLTDAVVTIRRTRFDGNGTPPAQWGAAWGCCGGALTLVRCDATLAQTTFRNNAAAGFGGAIQALGTRLRIEDSLFEGNRARAGAALLSWGRAPLLNPWSEEAWTGQPGLALSRTRFRRNAAALGGGALLFAGRVEGEQVLFRDNDGGAIAGWQALALPAPFDGVLAGLAADTAAAPADTLALARAILVDNVAARGPAIAAGAAAVELGNALVARNGPAGPTGAINAARVMLVNTTVADNPAGGVAGHAGAPATIRLGNTILLRNGGFQCAPGMAASSLGGNLQYPGSDCGGSAGARDPRLDGDYRPGLASAARDSGVTTLCTSHPLVASVDLFGRARLQRGRCDAGAIEEPLPPALAAVLGAGTGAAGQARLLALLFVLAILLFLVGLWWGRRRMRRRIR
>CP028324.1|AVR97098.1|3845830_3846328_-|hypothetical-protein
MLTRTLTTPGTVRIEGGGKVTLRGPVAGPLFAVGIGLQLVGVTVANPRTAATASAPNAGSIAVGAVPGAAIELHGVVTQDSLGAYVSRDLLAQDSTFTRNGDPARPGAFATIVSADRIELRRVTFSGNFDAPIGGGSAPIAGQRALARTVAIVDSTFAGNRTPCC
>CP028324.1|AVR97099.1|3849273_3849669_-|hypothetical-protein
MLRTSCHRAAPAALTAASLPLLLPLLPPLLLLLLLLLLPGMTQAAPCPAGTVVRAAAADDNVCVTPASRRRAAADNARAPLLWVSGPFGPKTCASGFVWRQAFAADTTCVTPALRAETLQENAGPRGDLPP
>CP028324.1|AVR97100.1|3849782_3855281_+|ATP-dependent-DNA-helicase
MAAHAAVACVSGPGRRIVYHVATYAILFTWSPMKQFTLPQNSFLLLLGLVTLAFLWILSPFAGAIFWGVVFAIVFAPLHYRLLEVTGNKPTASALIALLLIVLMVILPVTLIAISLVNQAAAVYAMIESGQINFGAMFQRAINGMPGWALEVLERFELTNLATLEAKLTAGAAQISQATAKYAINVGRNMLDFTVSVTVMLYLLFFLFRDGQTLSGKIRGAVPLSERYKTPLFENFITVIRATVKGNILVALAQGALGGLAFWFLDVPGPLLWGVVMAFLSLLPAVGAAIIWGPVAIYFIATGATWQGIGLVVYGVMVIGLVDNLLRPVLVGKDTKMPDYLVLLSTIGGMALFGLNGFVIGPVIAALFLATWTCSPTRPNSTAADPAMAPDPLHDFHPAVAAWFRATFAGATEAQRRAWPLIQAGRTTLIAAPTGSGKTLTAFLAAIDALVRESGQIALPDETRVLYVSPLKALSNDIRVNLLAPLEGIDAQLAALDMPPHGIRSAVRTGDTPQAERNAARKRPPHILVSTPESLYVLLGSDSGRAMLATVRTVIVDEIHAVAGGKRGSHLALSLERLDALLARPAVRVGLSATQKPIAVVAQFLAGSQRPCAIVDVGHVRARDLGLELPPVPLEAVMPNEVWERVYDRLAELAALHKTTLVFVNTRRMAERMARHLADRLGAEHVAAHHGSLAKEFRLDAEQRLKRGELRMLIATASLELGIDIGDVDLVCQIGSPRSIAAFLQRVGRSGHHVGGMPKGRLFPTSRDDLVECTALLDCVRRDELDALRIPVAPLDVLAQQVVAEVGLREWREDALFDLARGATPYAALPRERFEAVLRMLTEGYHSRQGVRGAWLHRDAVSGTVRGRRGGKLAAVMSGGTIPDNADFTVLLEPAGLNVGTVHEDFAVESLAGDVFQLGNTSYRILRVEAGKVRVEDAHGAAPNIPFWLGEAPGRSDELSLGVARLRGAIDRLLGERADHDAAIEHAVAWLYEHLGLADDAARQIVEYLARARAALGALPTADTLVLERFFDESGGMQLVLHAPYGSRVNRAWGLALRKRFCRTFNFELQAAATEDAIVLSLSESHSFPLDEVWRYLRSNSAEHVLVQALLDAPLFNVRWRWNATTALALPRFAGGRKVAPQLMRMKSDDMLAAVFPDQAACLENIAGEREIPSHPLVDQTLDDCLHEAMDADGWLALLRRMEAGEVRLLARDLPAPSPLAMEILNARPYAFLDDAPLEERRTQAVLNRRWTEPTSSDDLAALDPGAIDAVAAESWPRVRAADEMHEALVALACITVEEANASAGWNAWVAELAAGGRATRLGHLWVALERLACVQAVWPEALAEPPLAIPARLAERDAEAWTFDNALVELLRARLSGFGPQTLAAIAAPLRLPAGTVAIALARLETEGYVLRGRFTPGAADEEWCERHLLARIHRYTIRHLRREIEPVERQDFMRFLFEWQHVAPDARLQGGDALTQVLAQLEGYEAAAGAWESELLAARVRDYSQLYLDELCRAGRVVWTRVGAPASASGGPVRATPLVLLPRRQLGLWHALPAVAAEVALSPRALRVVDALRQHGAMFFDELAHDARLLGAELEDALGELVQTGLVNADSFAGLRAMLVPAAKRNTMDRRRRRGAGPTLEEAGRWALVRRADGVTLVERAAETSGQPPAPARRPRTEPATLEHIALTLLRRYGVMFWHLLEREAAWLPAWRELLPVYHRLEARGDIRGGRFVAGLSGEQFALPEAIPLLREMRRRGHDGSLVAVSGVDPLNQCGTLLPGEKVPALAGNRVLFRDGAPVATLVAGKFRYLGTPTPAEREAWHGALVGRGG

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Crispr_ID: CP028324_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_9

3920263-3920367

Orphan

Consensus_repeat	Method
GGTGACTGACCCCGCGGTGGGACACGGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_9

>merge|CP028324|9|3920263-3920367|CRISPRCasFinder
GGTGACTGACCCCGCGGTGGGACACGGGCTCTGCCGTCGAGTGGACGATTCACGGCCGGGCTCGTGTCCCGTTTTGGTGACTGACACCGCGGTGGGACACGGGCT

>CP028324|9|9|3920263-3920367|CRISPRCasFinder
GGTGACTGACCCCGCGGTGGGACACGGGCT	CTGCCGTCGAGTGGACGATTCACGGCCGGGCTCGTGTCCCGTTTT
GGTGACTGACACCGCGGTGGGACACGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR97148.1\|3923888_3925025_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376763
CP028324.1\|AVR97149.1\|3925027_3926065_-\|cysteine-synthase	unknown	unknown	gnl\|CDD\|107204
CP028324.1\|AVR97150.1\|3926079_3927420_-\|decarboxylase	unknown	unknown	gnl\|CDD\|143509
CP028324.1\|AVR99269.1\|3931048_3931873_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377682
CP028324.1\|AVR97142.1\|3911945_3912554_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP028324.1\|AVR97139.1\|3908689_3909664_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|235713
CP028324.1\|AVR97138.1\|3907223_3908576_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293818
CP028324.1\|AVR97151.1\|3927440_3929558_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
CP028324.1\|AVR97144.1\|3915758_3916181_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226384
CP028324.1\|AVR97140.1\|3909668_3910940_-\|alpha-amylase	unknown	unknown	gnl\|CDD\|200453
CP028324.1\|AVR97143.1\|3912637_3915580_-\|pectin-methylesterase	unknown	unknown	gnl\|CDD\|226384
CP028324.1\|AVR99268.1\|3922004_3923870_-\|IucA/IucC-family-siderophore-biosynthesis-protein	unknown	unknown	gnl\|CDD\|377237
CP028324.1\|AVR97136.1\|3905666_3906401_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97146.1\|3920381_3920789_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|319257
CP028324.1\|AVR97147.1\|3920778_3922008_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
CP028324.1\|AVR97141.1\|3911351_3911939_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97153.1\|3931874_3932315_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP028324.1\|AVR97137.1\|3906508_3907207_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97145.1\|3916182_3916746_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97152.1\|3929729_3930866_-\|endoglucanase	unknown	unknown	gnl\|CDD\|365907

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR97150.1\|3926079_3927420_-\|decarboxylase	gnl\|CDD\|143509	cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.	2.17708e-178
CP028324.1\|AVR99269.1\|3931048_3931873_+\|hypothetical-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	3.50351e-37
CP028324.1\|AVR97142.1\|3911945_3912554_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	3.93872e-05
CP028324.1\|AVR99268.1\|3922004_3923870_-\|IucA/IucC-family-siderophore-biosynthesis-protein	gnl\|CDD\|377237	pfam04183, IucA_IucC, IucA / IucC family. IucA and IucC catalyze discrete steps in biosynthesis of the siderophore aerobactin from N epsilon-acetyl-N epsilon-hydroxylysine and citrate. This family represents the N-terminal region. The C-terminal region appears to be related to iron transporter proteins.	8.75615e-55
CP028324.1\|AVR97139.1\|3908689_3909664_+\|short-chain-dehydrogenase	gnl\|CDD\|235713	PRK06139, PRK06139, SDR family oxidoreductase.	1.41971e-119
CP028324.1\|AVR97151.1\|3927440_3929558_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	7.1302e-108
CP028324.1\|AVR97149.1\|3925027_3926065_-\|cysteine-synthase	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	7.78881e-102
CP028324.1\|AVR97140.1\|3909668_3910940_-\|alpha-amylase	gnl\|CDD\|200453	cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	6.34432e-139
CP028324.1\|AVR97143.1\|3912637_3915580_-\|pectin-methylesterase	gnl\|CDD\|226384	COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism].	1.61877e-37
CP028324.1\|AVR97144.1\|3915758_3916181_-\|hypothetical-protein	gnl\|CDD\|226384	COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism].	9.98233e-06
CP028324.1\|AVR97146.1\|3920381_3920789_-\|transcriptional-regulator	gnl\|CDD\|319257	cd16400, ParB_Srx_like_nuclease, ParB/Srx_like nuclease and putative transcriptional regulators related to SbnI. This family contains a Pyrococcus Furiosus enzyme reported to have DNA nuclease activity and resembles the N-terminal domain of ParB proteins of the parABS bacterial chromosome partitioning system. This sub-family also includes siderophore staphylobactin biosynthesis protein SbnI. 60% of the P. furiosus nuclease activity was retained at 90 degree C, suggesting a physiological role in the organism, which can grow in temperatures as high as 100 degrees Celsius. The protein has endo- and exo-nuclease activity vs. single- and double-stranded DNA, and nuclease activity was lost in methylated proteins prepared for structure solution. This family has a fairly well-conserved DGHHR motif that corresponds to the same structural position as the phosphorylation site (a portion of the ATP-Mg-binding site) of sulfiredoxin and the arginine-rich ParB BoxII of ParB.	5.81569e-27
CP028324.1\|AVR97138.1\|3907223_3908576_-\|hypothetical-protein	gnl\|CDD\|293818	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Includes functionally uncharacterized Enterococcus faecalis EF2904. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.2845e-06
CP028324.1\|AVR97147.1\|3920778_3922008_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.68605e-29
CP028324.1\|AVR97148.1\|3923888_3925025_-\|hypothetical-protein	gnl\|CDD\|376763	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain. This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. The Pfam family consists mainly of octopine and nopaline dehydrogenases from Ti plasmids.	1.58869e-30
CP028324.1\|AVR97153.1\|3931874_3932315_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.01946e-10
CP028324.1\|AVR97152.1\|3929729_3930866_-\|endoglucanase	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	3.35675e-13

>CP028324.1|AVR97145.1|3916182_3916746_-|hypothetical-protein
MALCAATIASNATHAVPIALRDAVITATYNGSAASMLGLDHDFAAVAGSNTTRLDATDSGVEFLTGDYLFGIDFSPAGALTVIANGAIPTGAYSMRFDFGTSLASAIGAVTFTDARGASGIPVATLIDSHTFALDLSAVEWSEFGSITAEISAAAPVPEPATPALLLAGLAGLLATRARSLRHAEGG
>CP028324.1|AVR97144.1|3915758_3916181_-|hypothetical-protein
MRPIPSIAALGAAVLLCAATGHAADTTDPARQAAPPDGWASQAGGTLGGSTAPASQVYTVANRAQLLAALYNGGTNPKIIKLTGIVDMSEGQPFTSSADQAARGAVRLKSNTTLIGGAPMRASSTAISWSRTRHRSSSAT
>CP028324.1|AVR97143.1|3912637_3915580_-|pectin-methylesterase
MRQCHDGALDITNGSDYVTVSYNLFEQHNKNNLVGGSDSASGDEGRLRVTFSNNVFRDVASRAPRVRYGQVHLFNNYFAGSKTHPVYPVSYSVGVAHAAKILAQNNVFEVAGAHACADVVKDFGGAIPGAFRDSGSLLNGAPLGACGVSASVTWTPPYPFSVRPPSLVKANALAQAGGGKLQTAVTGTGSTTIDTGPVGACPPSGLYFCDDFQAGTAAQWDLLPLPGPNGAFRVQDEVAGSANKVLQYTAASSGGVLALLKPGALATVPAGDYYVEARIRPLTNGTTGNKQLYLVTRYVDANNWYGAGLNVQSSTASTQVEIAQMLAGSLSRPKQVKKPIAQDGPFYTVRFELAGSTLTVYLDGENLGSITDEAFAARGLVGLYTANKSFQIDDVRIGDPARKPAQLMLDPAVTSIEAEAGDAPYRLAVSAVAPDGGADSFTVASSDPAVAGVTLDGNAVAIAPLAAGSAEIVLRSGSGPALARTIAVSVAPGFVQPTQTYGLERATYPAPAGGVEPVDTPLRLTFDTPPTLGSGSVRVYRKVDDALVDVVRTSGETDVLGYPGQQQVRKVKTAPIRIDGNTATIHLHGNKLAYGTEYYVAVADGVFTNTKLGGVPFTGIGKAANWTFTTRAAAPDGTTFVVDDDGSAHFRTVQGALNHAMRHVPKATPVTIGVRNGRYDELLYLRDKDNVSIVGESRDGVVIRYTNNETLNPGTGASQAPAGSGTNGGRALLLVEGVDMLRLQRLTLHNTTLRGAGVSGQAETLYFNSDGGRLVAQDAAFLSEQDTLNLKGWSWFHRSLVAGNVDFIWGGSRAALFEDSEIRSLGDTASASSGGYVLQARVPAATDKGFVFLNSRLTHGPGPGPRHGDVPAGATYLARSPGGTASWDNIAFVNCRMDRHVAAVGWAGLGVNGQPAPNPAAPNAASGWREYGTMDLAGNPLDLSTRVGGYQLRAHEVAGFATRAQVFAAYGGGAGWEPQP
>CP028324.1|AVR97142.1|3911945_3912554_-|TetR/AcrR-family-transcriptional-regulator
MTGKPRSQPAVASAVVRRRADAVENRDRLLDAAEAVFLAEGIDAPLDAVAQRAGIGRATLFRHFADRHALIAGLQQRTLAAIEAEALRAPGDPYALVRLLRFLAQHLVARAPLTEYWQAFDHDSAEFQAAQARFVAAFEPPVAWARAAGTCRPDFQAADVVLLAALLGGALYARVPERRRALAARAWQLVVEVAQLREPRAE
>CP028324.1|AVR97141.1|3911351_3911939_+|hypothetical-protein
MIPPAWVWENGIVEDGDVLVLGIGCAWAVATWVRDRPASVALLARSVAPIWAVLIGREMSWGAVLFAPDHMTAAGPVFTSHHLWYRPAVTPLLVLLLGWSAWSAWRCRLDRQLYGLLARGRFPWPALLVVLAAAVGSSCAESHLPACVATLQNQRFEELAELVGYVALVAVQARVLAQCRTTAAMDATPATASAG
>CP028324.1|AVR97140.1|3909668_3910940_-|alpha-amylase
MKKRILAAALAAGALAAASNASAATPTQQAGASKAILLQGFHWQSASAANPNWYNRLRGNATDLAALGITHVWFPPPSDSAAPEGYLPRRLDVLDSSYGSSGDLYEAVRALKEQGIQSVADIVVNHRVGTKSWADFTSPSWSTYTVVNGDECNCGMGNGDTGTGFSAGRDLDHTNVGETQNGIKHWLNYTIKPVGFTGLRFDYVRGFGAGYAGQYANAFAPDFCVGEVWPDFDLNNLNANRQMIMDWINGTGNVCGAFDFTTKGILNDALANGNYWRLKATDGKPQGAIGWWPAMSVTFVDNHDTGPAASCGSGQNLWAAPCGSVMQGYAYILTHPGIPTVFYPHVYDWGLKSQIGALIKARKAAGVTSTSPVAIQQATQGLYAAIVTGGTRQLAMKIGPNSWSPGTGWTLQTSGTNYAVWIK
>CP028324.1|AVR97139.1|3908689_3909664_+|short-chain-dehydrogenase
MKRTTKRIVITGASSGIGAATAIAFARQGCQLVLGARGREGLEDVASQCRAAGGEAHIGIVDVTDAGAVARFAAEARAALGGIDLWFSDVGIGVVGKYLDVPIADHRRVIEANLIGHMNDAHAVLPIFQQQGHGIWVNMISIGGFITSPYAAAYAASKFGLRGFSAALRGELRDWPDIHVCDVYPTFVDTPAIYHAGNYTGARLRFPPGALAPEKVADAVVKLARRPRDTTVLGAPESALRLGEFANPVAASLMNRFMDAWSKKAAPARPTTGTMYVPPAAASGIRSGNGSERQRGRQGGDTVLVLGAALAAAALGMRLARRDG
>CP028324.1|AVR97138.1|3907223_3908576_-|hypothetical-protein
MTQPALTIARILHAGYVFECAGTRIAFDPVFENPFSRNCHAFPDVRFDVAAIRQQRFDAVFISHFHDDHCSFDSLDLLERSTPLYIYCVFDELFEMVKQLGFTRVTPLRLNEAVQVGPLRVTPREAMDAEVDSMFQAQAAGLNVLNVVDSWIDDATLAQLVAQGPWDMVLWPFQTMREIEVLAPTRALAAPPALPEHWCGQLQALAPRYVVPSSCQFRLEPWSWYNRAFFPISYALFAREVAAALPRAQVVRLDPGVAVRLDGTSLLPAPRLAWVEPVGPQDVDYAYEGNAAPPPTAQIARQFAALTPLQQARVMHFCLTELPARYAGTEVAGDYFDVPRVWQLTLYDAAGTPTQLRYRLAPGEPAALDAAAAPVGWSTEVPAAKLYAALEEGEALTSMYLRINDMVFDGVTERALADADVVDDPLIRCLFGESFGAYQAAQLRRLLLVR
>CP028324.1|AVR97137.1|3906508_3907207_+|hypothetical-protein
MSTTDLPFRATTDEACAWLAQQTATPWTLARLLEHGLTPYVWLDYDATLPELFGDANGGYAAPIFFEGDITRLAAGSADVLITLTKDAYGIVARPPAPGFTRRLDELRFQKKDLAALAKRLLQPPAAAKPATESPFGIGKDDVLAAFGRLVRLDLAQALDDAIGIFGDDGARVKASARKSKRHAVWNPVTLALGLHDVYRAPLGPLKKAFNTHEFLQAWRDDWEQSLRLLGK
>CP028324.1|AVR97136.1|3905666_3906401_-|hypothetical-protein
MQELIAQLTRLYLPSSQVGAPELSAQLEGQATHAFALGQDGAVRAIVLGFDAQPDADGAAQWERLCEAANQLQAGLGLPAPAVSIDGATGYRLWLSFAEPVPAALAQQLHDLLRAAYCPAMPRADVLAPVALPPCLNRASGRWAAFIHPGMGASFADEPGLEMRPPLAAQAAFLQGVERASMAQVRQAVDSLRRAPEEPIAAPDAAATPEGLLLKDATLEDIVRHLHAMNIEPTFRHVLPVRNA
>CP028324.1|AVR97146.1|3920381_3920789_-|transcriptional-regulator
MSDEMSYCVAIKPLDFFRSSEHVNQADVHKLAASIADTGVWTTPIPVDSATGIIMDGNHRARAAALLRLRYVPCVLLSYADARVSVTHWRTGEPFRVDRIVEPILGAGQVLPYKTTRHRFAPALPRTAIELAVLR
>CP028324.1|AVR97147.1|3920778_3922008_-|MFS-transporter
MTGAWAPRERLVHVLFVLQLVSMGAMEMSGPFWPVHLRALTGSDALFGFAGVAVYVGPMLGIVLTSTFWGRVGDCHGHQLMMIRALLGLALTQLALAHAADVWSILALRFLQGACAGYIAPAQAYGVGITAPERRARLFAYLQVATNVGSLAGAVAGGAILDNASFYWINVTAALLCGLCAAAVALWLPRQPQAVPGAGAGRVAAPVTASAPQPSVLPGLLLVLGLLLVSRTITQTPFALYVHETFGVDNWLTGLCYGLQALGFVLSAALWARYFERRAQADVLRRMTWVAAGCVALTAAAAGTGTFALFAALHLAWGVLLGATTPVLMALVSKAAGTLRQGHVLGIAQSVTQFSSIAGIALGGLLMQRVGLQYTYGWVALAYGLAVVAMLAIRRASARQPLGGNLHVR
>CP028324.1|AVR99268.1|3922004_3923870_-|IucA/IucC-family-siderophore-biosynthesis-protein
MNQTSLLSQHESEHQAALAGARHNALRRLVRCLFAENIIDPARLVTMPGERGAWLPLWPRQALLHFEDLWFAPAATFVNRGAITLVKGDASRTRVADPGQLIELLREHFDFAPGDAGVARLHADVSNSVANDALARVHRAGWNAALAQAIAASGAAGLFDYLRRQPSVRDAAVLLDQWGALEGHPFYPTWKCKPDLSPEQVARLSPEFHARVNVRIGALRADMAYIERMPHVASYHDWFASHFPTLWQDWTAGLRGRGLDPAAWLPLPIHEWQLEHYIPQEYAAEIAEGILLLDGPDVATWPTMSFRTMMPLTPGDAPFIKLPLALWLTSEQRSLQAKSIHMGPRISAVIERILADEGGFDGKLAIFTEEVALHYRHAVKQEDRPGRHLSVAYRSSRAAFERADGLLPVTVAALLTEAPDGRPLVSELAGHDVAGWFRQYARVVTRPVLAIYLLYGIALEAHQQNTSVLFGADGLPASLLIRDFGDGRTYAPLLAARGHALRPYVHPGILPTVFEGDITPVRAFVIDACLVCHLHELALLLTRAYGLADQRLWRILGEETAMAFEAVRDRVEPGFWQAERAAFLEQPWPTRSVLRMHLQQYADYRLTHELPNPLVQAGVTA
>CP028324.1|AVR97148.1|3923888_3925025_-|hypothetical-protein
MGKLNVLICGGGRTGHLNAVLFKQQPGVHVALLTSRADVVERLGDADAALAALLPEGGQLTGKPDLVTDQPALAARDADVVIVTVPAHARPALLRKLAPHLPADKPVYVGAIPGFCGFDWLAEQALAARPNAVIWGMKDVPHTAFDLVPGESVRLGGAKSALYVGTHQREGAAAREALLGHLRRLYTAPVELLDHYLEITLTPGNPIMHPSVVYGLIGPYGQWRDRPFEQPLCWWTDCAELSAYFLERSDEESQALCRAVERRLGVDLGSVLPLKQEIVDAYGDQIGDSATMLSVLRTNRAYDAIVAPLVRDADGYRIDRASRAFHEDVAYGLALLVEMGRRLQVPLPHIEEIYRWNVQYMGGLRDCALDYFPANWPA
>CP028324.1|AVR97149.1|3925027_3926065_-|cysteine-synthase
MILSKVTDLIGNTPILCLPVPAKNARLLLKIEKNNPGGSIKDRMARNMVIAALKSGRLKPGGVIVESSSGNTAIGLAITAIEFGLRFIAVVDHHAAQDKIAVLRALGAEVRYVEGTFREDEVAVVERQRLAAELAGKIPGAIFMNQSDNIANAGGYFDFVREVIDQVGGQIDAYVGCVGTGGSMTGIARGLKLHNPKATVLAVEPDGSIVFGQPGHPYYQSGTGTPAGDTVGLVLDYSCIDLGVQVTDAQAFETARYVARHTGLLVGGSTGGVIYKALEYIHRGVIGGNVIAAVADGGEKYLHTVFSESWLGERGLLDPAIGAQLDSWLGQEPAAEPAMPRLSVV
>CP028324.1|AVR97150.1|3926079_3927420_-|decarboxylase
MQKPLVPLLDQAVAALLHAAPGQLAGLVGRHGSPLNVVWPHILRQNVDTLRAVLRAHDVRHEIFYGAKVNKSPALVHAAVRADAGVDVSSVYELRDALGAGADPARVVATGPAKTAVFHAELLACGALISVDSCEELAALEAAVVAPARARVLLRYRPESNRNSRFGMDAAELLQCLHRLAARRASFIFEGFHCHLGGYAWQTRVQAIGELAASVAAARELDLPPRMLDIGGGLPVRYVDGDAYDAFLPAQEPADYRTGRVPTSYYPYGGRTDAASWLHNVLAAPCGDGRTVAQYLNAERLTLALEPGRSLVDQAAVTAFRVTQVKALADGKHVVFVEGSSFSACETWFGSEFLVDPLLLPSDPQRASEGAPFAAYIAGHSCLDDDVITNRILNFDRRPMPGDLLVYANTAGYQMDLLENEFHRHPMPRRIVVHVNARGAMEFSPD
>CP028324.1|AVR97151.1|3927440_3929558_-|TonB-dependent-siderophore-receptor
MRPQLAPLVLALLTAGAITHAHAEDSAPAEGALPQIVVSAERGDSFAGGQVARKARLGMLGNMDVMSTPFNVSSYTAQAIADQQAVSVADVLTRDPAVRATGQGGGILDAFFIRGFAIGEGNVGEIALDGQYGVAPNYRVFADYAERVEVIKGPAALLYGMSPNSGIGGVVNIVPKRAQTTDLTRLTLDYAGDSQLGAHVDVGRRFGAKREFGVRVNGRRQQGDTQLDKQYRRADVGALALDYQGARLRVTLDALGQTERFDAPSRPFLAAAGVAVPAAPDGKRNVTQDWEWAKIEDRSLLLRTEYDVTDALTVFANAGGARTHVARLFGTPTILNAAGDTRVTPDQFRLDVERATVDGGLRAAFDTGGVQHAVTLQASRYRDQLDRAAVGGRPVLSNLYAPVAALVQDVPAPALVPKVSETHLSGVALADTMTALDERLLVTLGVRRQQVESDNFNASGATTAQYDRRATTPMIGVAFKPWRQLALYANRIEGLSKGDTAPPTAANAGEIFAPYKSRQNEVGVKFERGTLAATLSAFRIEKPSGQLTGNVYAVDGEQRNQGVELAVFGQAMPGLRLTGGATFLDAELTRTNNAATLGKTPVGVPSSQANLGAEWDTALAGLTVTGSVSYTGRQYVNQANTQSIPSWTRLDLGARYQTRIDGRDTTLRASVANVANRDYWSGVASYGAFVQGAPRTLLLSATIDL
>CP028324.1|AVR97152.1|3929729_3930866_-|endoglucanase
MTLRINGWRVAAALLLAVAGQASALPTCASAASDPDGDGWGWENNQSCKVAPAAPDCANAASDPDGDGWGWEGGMSCRVVFKGFRVAGSVLRDANGNPFVARGVNNPHAWYDTQAFNVLGNLAARKTNLIRVVWTMNGSPARLDQILSAIEGHKMVSIVELHDGTGSNDAAKLQAMANYWARADVVAVLKKHERSTMINIANEWGDAGKAPLQWRDDYKQPITTIRNTGLTTTLVIDNPDYGGNPNGGLWYGRDLQEHDPRHNLLFAVHMYSTFNNPDDIYNTIVNYRNGQLPLLIGEFGYNYNNGANNLNSRVDAARLMEWAQQFGVGTVAWSTAGNDGPNAWLDLLSNWSGTTAWGNQVWYSQYGIANTARRASIY
>CP028324.1|AVR99269.1|3931048_3931873_+|hypothetical-protein
MRRSFPLHLACLAAMAAPAVAAPPALPLWEAGIVGGVASTPAYPGADDRSTRTLALPLVIYRGKVLRADRSGVSARLFDSDRVELDVGFAASLPARSRDVALRDGMPDLRSLVEFGPRLKVLLAAPDAVSRVRLELPLRAPFELGHGFQRHGFVFEPRIVYETGSDGGIWQAAASAGAVVGNAGLHAYFYDVAPQYATPWRPAYQAHGGLMATRVGLNLSRRLGPDWRVFGLVRYDHLGHAVNRDSPLLRRDGGWSAGMGVTWTLYRSAARAWD
>CP028324.1|AVR97153.1|3931874_3932315_-|hypothetical-protein
MSDPLPSALPEALHERIVTACQDGDALAAAGQLEAAKGCYLAALELLPGEHRQWEAATWIYVALGDAHLKLRDHDKAFKCFHNAVQCPHGVGNPYIHLRLGQLCFERGDLVRAADELTRAYMGGGVDIFMEDDPKYLAFLETRIIL

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Crispr_ID: CP028324_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_11

4692259-4692349

Orphan

Consensus_repeat	Method
GGTGCCTGACCCCGAAGTGGGACACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_11

>merge|CP028324|11|4692259-4692349|CRISPRCasFinder
GGTGCCTGACCCCGAAGTGGGACACGGGCTCGACCGCAGCGATGGATGAGCTCGTGTCTCGGTTTGGTGCCTGACCCCGAAGTGCGACACG

>CP028324|11|11|4692259-4692349|CRISPRCasFinder
GGTGCCTGACCCCGAAGTGGGACACG	GGCTCGACCGCAGCGATGGATGAGCTCGTGTCTCGGTTT
GGTGCCTGACCCCGAAGTGCGACACG

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR97738.1\|4693223_4693643_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97743.1\|4696329_4696896_-\|ADP-ribose-pyrophosphatase	unknown	unknown	gnl\|CDD\|239516
CP028324.1\|AVR97730.1\|4683693_4684347_+\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
CP028324.1\|AVR99314.1\|4694125_4694344_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97740.1\|4694421_4694931_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
CP028324.1\|AVR97745.1\|4697323_4698808_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
CP028324.1\|AVR97733.1\|4687546_4689733_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226702
CP028324.1\|AVR97728.1\|4680686_4681667_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225968
CP028324.1\|AVR97739.1\|4693709_4694114_-\|VOC-family-virulence-protein	unknown	unknown	gnl\|CDD\|319916
CP028324.1\|AVR97734.1\|4689729_4690239_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
CP028324.1\|AVR97741.1\|4694927_4695635_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP028324.1\|AVR97731.1\|4684542_4685910_+\|trypsin	unknown	unknown	gnl\|CDD\|379142
CP028324.1\|AVR97737.1\|4693005_4693224_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR99313.1\|4686929_4687550_+\|heme-oxygenase	unknown	unknown	gnl\|CDD\|350857
CP028324.1\|AVR97735.1\|4690225_4690780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378704
CP028324.1\|AVR97736.1\|4690791_4692012_-\|cation/H(+)-antiporter	unknown	unknown	gnl\|CDD\|223551
CP028324.1\|AVR97744.1\|4697006_4697321_-\|DUF2818-domain-containing-protein	unknown	unknown	gnl\|CDD\|378532
CP028324.1\|AVR97732.1\|4685906_4686890_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238017
CP028324.1\|AVR97742.1\|4695634_4696333_-\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR97729.1\|4681785_4682733_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR97730.1\|4683693_4684347_+\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	4.12906e-122
CP028324.1\|AVR97740.1\|4694421_4694931_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	7.89205e-98
CP028324.1\|AVR97745.1\|4697323_4698808_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	0
CP028324.1\|AVR97733.1\|4687546_4689733_+\|hypothetical-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.91287e-174
CP028324.1\|AVR97728.1\|4680686_4681667_-\|hypothetical-protein	gnl\|CDD\|225968	COG3434, COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms].	6.18061e-27
CP028324.1\|AVR97739.1\|4693709_4694114_-\|VOC-family-virulence-protein	gnl\|CDD\|319916	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins. Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.30699e-35
CP028324.1\|AVR97734.1\|4689729_4690239_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.15519e-18
CP028324.1\|AVR97741.1\|4694927_4695635_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	6.96476e-88
CP028324.1\|AVR97731.1\|4684542_4685910_+\|trypsin	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	2.14232e-22
CP028324.1\|AVR99313.1\|4686929_4687550_+\|heme-oxygenase	gnl\|CDD\|350857	cd19166, HemeO-bac, heme oxygenase found in pathogenic bacteria. This subfamily contains bacterial heme oxygenase (HO, EC 1.14.14.18), where HO is part of a pathway for iron acquisition from host heme and heme products. Most of these proteins have yet to be characterized. HO catalyzes the rate limiting step in the degradation of heme to biliverdin in a multi-step reaction. HO is essential for recycling of iron from heme which is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes heme oxygenase (pa-HO) from Pseudomonas aeruginosa, an opportunistic pathogen that causes a variety of systemic infections, particularly in those afflicted with cystic fibrosis, as well as cancer and AIDS patients who are immunosuppressed. Pa-HO, expressed by the PigA gene, is critical for the acquisition of host iron since there is essentially no free iron in mammals, and is unusual since it hydroxylates heme predominantly at the delta-meso heme carbon, while all other well-studied HOs hydroxylate the alpha-meso carbon. Also included in this family is Neisseria meningitidis HO which is substantially different from the human HO, with the reaction product being ferric biliverdin IXalpha rather than reduced iron and free biliverdin IXalpha. HO shares tertiary structure similarity to methane monooxygenase (EC 1.14.13.25), ribonucleotide reductase (EC 1.17.4.1) and thiaminase II (EC 3.5.99.2), but shares little sequence homology.	7.21733e-38
CP028324.1\|AVR97735.1\|4690225_4690780_-\|hypothetical-protein	gnl\|CDD\|378704	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term. The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.	2.74134e-12
CP028324.1\|AVR97736.1\|4690791_4692012_-\|cation/H(+)-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.56289e-28
CP028324.1\|AVR97744.1\|4697006_4697321_-\|DUF2818-domain-containing-protein	gnl\|CDD\|378532	pfam10993, DUF2818, Protein of unknown function (DUF2818). This bacterial family of proteins has no known function.	1.19635e-35
CP028324.1\|AVR97732.1\|4685906_4686890_+\|hypothetical-protein	gnl\|CDD\|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	2.34324e-12
CP028324.1\|AVR97743.1\|4696329_4696896_-\|ADP-ribose-pyrophosphatase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.03645e-52
CP028324.1\|AVR97729.1\|4681785_4682733_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	8.28729e-77

>CP028324.1|AVR97736.1|4690791_4692012_-|cation/H(+)-antiporter
MSATEIFLLAMLLIFTVPFLVWRLGRTEYFAPLVIVQIIMGIVLGPGVLGAAFPEYHRFVFNADVVKTMNGIAQWGVMLFVLLAGVELDLKKAWQYRRESAVTAGLSLGMPLLCGCAAALVLMSYPGWMGAKAATWQFTLGTGMACAVTALPVLVLLLEKLDVLRQPMGQRILRYASLDDIAIWGVLALILLDWERIGRQLGFIVAFAVLTVLFRRLMARLRRDDRWYVALAWLIACAFGADWAGLHFMVGAFLAGVVMDADWFGQEQLDALFRNVLLVLMPVFFLSTGLRTRWDLGGAMGTYAVFVGAALLLVASVGGKLAGAHLAGRMLGWKSGEASVIGWLLQSKGLIEIIFANILLDKQIITNETFTALLLMAVGSTMLTVPVVHPKLHRARHTNLVGQASS
>CP028324.1|AVR97735.1|4690225_4690780_-|hypothetical-protein
MARTGLTKADIKACRDRLLAEGRHPSADAVRKALGDTGSKSTIHRCLKELAREDEGTGSARADTARRLHALVEQIADLLHADGQGVSRERHEQVLRRKDQELAELRAEVARLTARVAQLEARPAAARERPAARGSASITGFGGFGAALANSRSGQQDASPFSALRAGGRSEIVELGSEWPVRWA
>CP028324.1|AVR97734.1|4689729_4690239_+|GNAT-family-N-acetyltransferase
MTAAQQVVVRTLSATDAGALLAFELANRAWFERHIAPRDPAFYTPAGVAAHIDDYLAGLATGTWHPFVLVDVDGTIVGRANLKDIDQAARSAEVGYRVAEQACGRGLATLALRHLVRAAGARWRLQRLDAFVYPANVGSRRVLARCGFVAQPAQAGTAEQRFTLVVTPT
>CP028324.1|AVR97733.1|4687546_4689733_+|hypothetical-protein
MNGIGAPPGTGIDLDNCADEPIHIPGLIQPHGALLAFDHGGALRSWSANAAELLGFAPVLNEQVTRLPLQAPVLAQLRECIDDSGADGCTRTAIETTMAGQVFDCIVHSDAYRVIAEFERRDIRSDTVAAFALKAHTAIERLKRQKTIGTLLQLAVEQVRAITGFDRVMAYRFRHDDSGDVIGEALDQGLKPFLGMRYPASDIPAQARRLYTINTLRLIADIAYAPVPLVGAPGDPPLDMSHAVLRSVSPIHVEYLQNMGVAASMSVSIVVNGRLWGLIACHHRTPLRVPYSIRMACDVIAQVLAATVQSLDARERAALVEQAAHVRTHLIETLLQEDDVLAALQRHAADLATTLGAEALVFAQQGRVLVHGALSHEAATAIVASLPTDGEEVLQRCGRAEWPAATGAAIGPWVGLLGLHFDPANGGWLLALRREQVETIRWGGKPEKLPHTGPLGHRLTPRGSFDEWVESVTDTAEPWDAGRLLVAEQLLAEMHRASMTRHAELDRARMQLLAMLGHDLRDPLQSITMAATVLQHGAQPHQLGQRIERSSGRMQRLISQVLDMSRLDSGMGLALRKEGTDISRMVDDLVDEARLAHPGTWYETAVAPNVTARVDADRLAQVISNLLSNARHHGTGGHPVLVALREERGTIVIEVRNHGAPIAPELEAQLFNPFKRMALQNRANRTGMGLGLYIAFNIVQGHGGTLTYRHEAPHVVFTVRFPAADGTA
>CP028324.1|AVR99313.1|4686929_4687550_+|heme-oxygenase
MTMESPDILAALREATASRHAVLDQAMPLAAHEPTLHHYRAHLALLRHWIAPIEQRQAHYHDGPQDAALLPPAPHLPLLDADLADPALPGPAPAIAAPAGPALAHDDAAYRWGVAYVLEGSRLGGMVLYRCLAQRLAPHPLRYLHNDGTAPGPRWQHFLRVLREQVRTPAAIATACAGARDAFDSLIALQSQHPLTPEVPARQVAA
>CP028324.1|AVR97732.1|4685906_4686890_+|hypothetical-protein
MTAPYFVEVLARNGDVLSRQRCDALPVTIGRGYDNDVILDDAHTAPHHAVLEARDDGALVLRDLGSRNGIVLHGRRQQHVALDGSTVVRLGHTRLRVRDARFPVQQEVADTTMHAWEGGVPAVAGLALIALFVGVEQALTEVESFQAIKYLQTIVSGLALGLAWSGVWALVNRLFAGHARLGRHLFILGAGLIAVGGWKAMSAVLAFAWSAEIFTRYGNLVTNLIGCGMVYFHLRTIRPDSSPRRLLTACALLLGLGSGLVLMSNLESSGRLADEPYMSVLLPPEIRQSPDHGVDEFLGGAARLRTAADAARRQAVPDSDGEDGSDD
>CP028324.1|AVR97731.1|4684542_4685910_+|trypsin
MKLHRLASTLTFPLAMAAGAALAAPTPARAPAPAVPAAAPANAPLPPPSSAAQKLYSAAKADLLQVRSLLRSGRTQSSVGSGFLVGTSNLVLTNYHVVSQFALDPETYTGEWVDTAGQRGNIELLAVDVLHDLAVVRVNRYGTGVFKLPDGPQKLTQGQYLYSLGNPLDLGFAISEGAYNGVIARTFYDQLMFSGPINAGMSGGPAVTADGEVAGINVSKRLDGELVSFLVPVRYAQELLRRVDPGARPPADFTAIVTQQLLAHQKAMVDQLLSGPLTLKAMGPYQVPVRESEQMRCWGQSNAEADARGEKPYAVDNTSCTMESALFVSGTLQTGQVGIRHQYMRSKGLDRIRFAQLSSASFKNEALGGHNDSRLTAPECTEQFIRNKSLPMRAVMCVRAYRKFAGLYDFTVLTASTDDALMNLQSRLDVRGVSYDNGLRSARAFLQALGREEAR
>CP028324.1|AVR97730.1|4683693_4684347_+|GTP-cyclohydrolase-II
MQPVAPAAPTADLDYVTSCALPTPWAQFTLHAFVEHSTGKEHLAMVLGDIGDGAPVLARVHSECLTGDVLFSQRCDCGAQLEGALQRIAAEGRGVLLYLRQEGRGIGLINKMRAYRLQEAGADTVQANEQLGFKPDQRSYELVAPMLRQFGVQSLRLMTNNPRKIAAMEKLGVPVAERVPLLVNRNTFNQHYLNTKALKLGHMMTPVVATATTDGEQ
>CP028324.1|AVR97729.1|4681785_4682733_-|LysR-family-transcriptional-regulator
MLRLSLEALQIVDAIDRRGSFSAAGKELHRVPSTISYTVGKLEDDLGVQVFERNGPRVELTRAGRELLKEGRYLLKAAQDLEHRVRRVASGWETELAIGHDSMFASVALDGDIRAFYDVAQQTRLRVVQEALSGTWEALLDRRVDLVVGAPGDGPAGGGYVSQPIGSLRWVFAVAPSHPLAALAQPLGREELQAHRAIVMADSARRLAPRTVGLLLGQDTLTVPDMTAKFQYQLAGLGFGFLPEPCARAAIAAGLLVEKAVAEPKPDETFHLAWRSGEGGAALNWWLERMRRPGLFEQLCRHLPALATGQGGADA
>CP028324.1|AVR97728.1|4680686_4681667_-|hypothetical-protein
MNTDLVLFHLLADRRGRPAALVLRAPGGLPPDALPAALTELPARLPCLLRADVPETTAAALRQAGWQPLADAEVLRADAPFDGALPPGVRYVEGDWALAPPARPPGQQAASRALALQLVQLVSRDADTHEIEALLRRDPTLSYHLLRLVNSLGTTGGARKVTSFAQAILILGRQQLRRWLNLMLFAAREGDMRSAMLLARVSVRARLMELLARAAGLDRHHQEQAFMTGMFSLLGVLFGSPLREVLAPLALGPAVQEALLAGTGELGTLLALVQAAERDAGDELAAALGALQVDVAEFNALAAEAHLWMLGVIEDAAPQKTGTDNA
>CP028324.1|AVR97737.1|4693005_4693224_-|hypothetical-protein
MDFETLAIVAGVLPAIMLCLRAVIKSLVGTQDVYVLSNREGRKVQVVLDKHASEAERAAIINRKVRELEQTA
>CP028324.1|AVR97738.1|4693223_4693643_-|hypothetical-protein
MTVWYRIWIYVLPIPMWLAEYFMRTIMKNPEADDFFPSSLAAAALGLVIPVLAPKPVAAPAGIAIPPGTLLVDQKDEAVRRCAAAMLFGGTMLWLVTVYLSIGGHWPADWPCQNVDQKFWIGAILYAVAFGLNEWKERV
>CP028324.1|AVR97739.1|4693709_4694114_-|VOC-family-virulence-protein
MIRIREIDHIVLRVVNLERMLRFYTQVLGCGIERRQDEIGLVQLRAGGSLVDLVPVDQKLGRMGGAPPGREGRNVDHFCFRVEPFDEAAIRAHLASFDVAAGPTESRYGAEGEGPSIYLEDPEGNTVELKGPPY
>CP028324.1|AVR99314.1|4694125_4694344_-|hypothetical-protein
MVGQAYHPWLKVQGPRAMTADHPVGTRFLVHAKLTDRLGGEPYLYVYHGDPIVVLSDAQARKFLAEFRRGRI
>CP028324.1|AVR97740.1|4694421_4694931_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MNQPVLPALPFRIGQGYDSHRLVEGRKLILGGVEIAHDKGLLGHSDADALLHAVTDAILGAAALGDIGRHFPDTAAEFAGANSRVLLREAARRVRETGYDIGNVDATIIAQRPKMAPHIGTMVANIAADLGVAPGQVNVKAKTNEKMGYLGREEGINAEAVALLVRRPE
>CP028324.1|AVR97741.1|4694927_4695635_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MTAVPQREVVSYFALIPAAGVGARMGAAGPKQYLPLAGKPMLRHTLQAFLDCAAIAHVYVVVSAADGYIDDVVADCGKRVTVLRCGGATRMESIRNGLRALDAHGEDRILVHDAARPGLTPALIDKLIGEAGANPAGGLLALRVVDTVKSTRTGRVETTPRDGLWLAQTPQMFPYELLLRALEQAPDPEAITDDASAVEMLGLSPQLVEGHPRNLKVTLPADVGIATLYLTHEHL
>CP028324.1|AVR97742.1|4695634_4696333_-|hypothetical-protein
MTLRRATLAAMLALAAGGASAARTPFQVRCEDTISKTISVLSSKQNGYTINTQLSYKMLTAMKGVASRNQFVLGLTRTESRVQVGLAGQMLQDPASGYECVAPQIKVQLTYEPVKIYVGSEFPAGTCGYQEILAHEMRHMQAYMAHLPKVEKTVTAALAKRFEGKPLYAPAGTARSALAFEIDSGWLPYIKAEMAKVEAVQAQIDSPAEYARLSRACGGEIQKILIKTRALR
>CP028324.1|AVR97743.1|4696329_4696896_-|ADP-ribose-pyrophosphatase
MSDAHLKETKVDGGLAYDGGFLKVHKDRVTLPNGAITQREYIRHSGAVTILPVLDDGRILLERQYRYPNDRVFIEFPAGKIDPGEDHLECAKRELKEETGYTAREWQFVATIHNAIAYSDEHLELYLAKGLEQGEAELDEGEFVECFTATLDEMLEWVRTGAITDVKTIIGTFWLDKLRSGQWTPPAK
>CP028324.1|AVR97744.1|4697006_4697321_-|DUF2818-domain-containing-protein
MDAGAAAWLVILLALAGANLPFLNDRLFAVVPLKSSGTATGKPFLLRLVELVVLFFIVGSVGRLLEGRIGTVFPQTWEFYAIGACLFVVLAFPGFVVRYLRKRH
>CP028324.1|AVR97745.1|4697323_4698808_-|NADH-quinone-oxidoreductase-subunit-NuoN
MNNPNLIPIYAEIFLVVATSAILLVDMFLSESKRGITYVLSLLALVGCAWFTFVDFQAGTTTYTFYNMVVSDPMGNLLKLFTYLTVGVTFVYARQYTTERGMLGGSLGGEFYVLALFSMLGQMVMIAANNFLSIYLGLELMSLATYALVALRRDHTMSTEAAMKYFVLGALASGFLLYGMSMLYGATGTLDLSAMAAKIASGTVTPTILVFGLVFVVAGLAFKLGAVPFHMWVPDVYQGSPTGVTLLLGAAPKLATFAICIRLLVEGLLPLALDWQQMLMILAVLSLAIGNLTAIAQTNLKRMLAYSTIAQMGFVLLGLMAGVTGQDQSNASAAYSAAMYYSITYVLTTLGTFGLIMVLSRAGHEAEELVDFKGLSKRSPWFALVMTLLMFSLAGVPPMMGFAAKLAVLQTVLHTGQLWLTIFAVMASLIAAFYYLRVVKTMWFDEPTDTARISVAADKNIVLGLNALLVVVLGIVPGPLLDACLHAMKTTLQS

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Crispr_ID: CP028324_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_12

5265317-5265419

Orphan

Consensus_repeat	Method
CCCGTGTCCCACCACGGGGTCAGTCACCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_12

>merge|CP028324|12|5265317-5265419|CRISPRCasFinder
CCCGTGTCCCACCACGGGGTCAGTCACCAAAGTGAGACACGGGCTCGGCCATATAAGACGTGGCACGGATGGACCCGTGTCCCACCGCGGGGTCAGTCACCAA

>CP028324|12|12|5265317-5265419|CRISPRCasFinder
CCCGTGTCCCACCACGGGGTCAGTCACCAA	AGTGAGACACGGGCTCGGCCATATAAGACGTGGCACGGATGGA
CCCGTGTCCCACCGCGGGGTCAGTCACCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR98182.1\|5253793_5254801_-\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|132934
CP028324.1\|AVR98192.1\|5269638_5272170_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225669
CP028324.1\|AVR99350.1\|5263433_5265305_+\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|238452
CP028324.1\|AVR98183.1\|5255238_5255901_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319835
CP028324.1\|AVR98180.1\|5252031_5252745_-\|16S-rRNA-pseudouridine(516)-synthase	unknown	unknown	gnl\|CDD\|211327
CP028324.1\|AVR98191.1\|5268573_5269584_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381113
CP028324.1\|AVR98186.1\|5260919_5262260_+\|chromate-transporter	unknown	unknown	gnl\|CDD\|273350
CP028324.1\|AVR98188.1\|5265433_5266681_-\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|224241
CP028324.1\|AVR98195.1\|5275847_5277116_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377280
CP028324.1\|AVR98181.1\|5253178_5253466_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR98185.1\|5257711_5260861_+\|ribonuclease-E/G	unknown	unknown	gnl\|CDD\|236766
CP028324.1\|AVR98189.1\|5266788_5267187_-\|hemoglobin-like-protein	unknown	unknown	gnl\|CDD\|381282
CP028324.1\|AVR98184.1\|5255977_5257009_-\|23S-rRNA-pseudouridine(955/2504/2580)-synthase-RluC	unknown	unknown	gnl\|CDD\|182909
CP028324.1\|AVR98196.1\|5279401_5280061_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|367555
CP028324.1\|AVR99349.1\|5254854_5255172_-\|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl\|CDD\|225057
CP028324.1\|AVR98194.1\|5273826_5275749_+\|PrkA-family-serine-protein-kinase	unknown	unknown	gnl\|CDD\|185352
CP028324.1\|AVR98193.1\|5272175_5273189_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
CP028324.1\|AVR98187.1\|5262280_5263393_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
CP028324.1\|AVR98190.1\|5267296_5268577_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP028324.1\|AVR99351.1\|5277121_5278654_+\|SpoVR-family-protein	unknown	unknown	gnl\|CDD\|236973

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR98182.1\|5253793_5254801_-\|S49-family-peptidase	gnl\|CDD\|132934	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain.	1.95927e-78
CP028324.1\|AVR98192.1\|5269638_5272170_-\|ABC-transporter-permease	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
CP028324.1\|AVR99350.1\|5263433_5265305_+\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.39058e-167
CP028324.1\|AVR98183.1\|5255238_5255901_-\|HAD-family-hydrolase	gnl\|CDD\|319835	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans HAD-superfamily hydrolase, subfamily IA, variant 1. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.31473e-72
CP028324.1\|AVR98180.1\|5252031_5252745_-\|16S-rRNA-pseudouridine(516)-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	5.28418e-75
CP028324.1\|AVR98191.1\|5268573_5269584_+\|hypothetical-protein	gnl\|CDD\|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.33022e-10
CP028324.1\|AVR98186.1\|5260919_5262260_+\|chromate-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.01459e-53
CP028324.1\|AVR98187.1\|5262280_5263393_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	5.89191e-171
CP028324.1\|AVR98195.1\|5275847_5277116_+\|hypothetical-protein	gnl\|CDD\|377280	pfam04285, DUF444, Protein of unknown function (DUF444). Bacterial protein of unknown function. One family member is predicted to contain a von Willebrand factor (vWF) type A domain (Smart:VWA).	0
CP028324.1\|AVR98185.1\|5257711_5260861_+\|ribonuclease-E/G	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0
CP028324.1\|AVR99351.1\|5277121_5278654_+\|SpoVR-family-protein	gnl\|CDD\|236973	PRK11767, PRK11767, SpoVR family protein; Provisional.	0
CP028324.1\|AVR98184.1\|5255977_5257009_-\|23S-rRNA-pseudouridine(955/2504/2580)-synthase-RluC	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	1.74478e-130
CP028324.1\|AVR98196.1\|5279401_5280061_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.80172e-14
CP028324.1\|AVR99349.1\|5254854_5255172_-\|Rieske-(2Fe-2S)-protein	gnl\|CDD\|225057	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only].	2.3366e-15
CP028324.1\|AVR98188.1\|5265433_5266681_-\|DNA-recombination-protein-RmuC	gnl\|CDD\|224241	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only].	1.37181e-94
CP028324.1\|AVR98194.1\|5273826_5275749_+\|PrkA-family-serine-protein-kinase	gnl\|CDD\|185352	PRK15455, PRK15455, PrkA family serine protein kinase; Provisional.	0
CP028324.1\|AVR98193.1\|5272175_5273189_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	2.41805e-153
CP028324.1\|AVR98189.1\|5266788_5267187_-\|hemoglobin-like-protein	gnl\|CDD\|381282	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like. The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb2's belonging to this group include Pseudoalteromonas haloplanktis PhHbO (encoded by the PSHAa0030 gene) which appears to be involved in oxidative and nitrosative stress resistance.	3.51439e-62
CP028324.1\|AVR98190.1\|5267296_5268577_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.99418e-31

>CP028324.1|AVR99350.1|5263433_5265305_+|molybdenum-cofactor-guanylyltransferase
MILAGGRGTRMGRVDKGLQPFRGATLAAHVLRRLAPQVHVVAINANRNQEAYAALGAPVLPDELTGFEGPLAGLQTGLRHCATDLLVTAPCDSPFLPPDLVQRLRDALVTQQADLALAVTMETDEAGVAHKQPHPVFSLVRKSALPRLDAYLAEGGRRMDGWHKSIKVAEVLFNDAAAFRNINTLAELQQEEQARDAAPTLQDVVSCLSGYDPHAVPVSQAQHIIREFVQPVRAVEKVALRAALGRVLAADLVSPISVPAHDNSAMDGFAFAGDQLDGEHPTTLQVIGAVYAGRPSDLRPQAGECVRIMTGGVMPPGCDTVLPQELAAGITDDHVTIAPRTVKTGDNRRFKGEDLMEGSPALKAGKIVRPADLGLIASLGIAEVPVRRKLRVAFFSTGDELRSIGEPLAPGCVYDSNRYTLHGMLTRLGVELVDMGIVKDDPASLEAALRDACESADAVITSGGVSVGAADYTKQIMATLGDVTFWTIGMRPGRPMAFGKIHSNGHSAFLFGLPGNPVAVMVTFYFFARHALLRMMGASASDDLLVQARSFGPIRKKPGRTEYQRGILTVNADGAREVRITGSQGSGILRSMAEANCMVVLPDHQGNVAAGDLVDVLLFEGLI
>CP028324.1|AVR98187.1|5262280_5263393_+|GTP-3',8-cyclase-MoaA
MTEKIIILSDGRARAPAIPAALEPATGELRDRLARPLHDLRISITDRCNFRCVYCMPKEVFDKDYQYLPHASLLTFEEITRLARQFVAHGVEKIRLTGGEPLLRKNIEKLIGMLAELRTVHGKPLDLTLTTNGSLLARKAQALKDAGLNRVTVSLDAMDDAVFRAMNDVDFAVADVLHGIDAAHAVGLGPIKVNMVVKAGSNEQEILPMARYFKGTPHILRFIEYMDVGASNGWNMRDVIPSAEIVRRIGAEMPLLPADPNYTGETAARWRYADGGGEIGVISSVTQAFCKDCTRARLSTEGKLYTCLFASRGHDLRALLREGRSDAELSAAIGAVWQGRTDRYSELRTTNTEGLSRAGERKVEMSYIGG
>CP028324.1|AVR98186.1|5260919_5262260_+|chromate-transporter
MTIEPSRPAPVTLATALRYWLKLGFISFGGPAGQIAMMHAELVERRRWISEQRFLHALNYCMLLPGPEATQLAIYIGWLLHRTWGGIVAGVLFVLPSLLLLIGLGWIYLAYGHLPVIAGLLYGLKPAVVALVLAAAWRIGRRTLRNGVLAAIAAAGFVALLLRLPFPLVVLGAAAIGWLGGRLWPAKFSLGAPAAGSAVRGYGPALIDDDTPTPAHARFGWRRLIATVAAGMVLVGASWLLLVAVAGRHGPLAQMGWFFTKAALLTFGGAYAVLPYVYQGAVYQYYWLTPGQMIDGLALGETTPGPLIMIVAFIGFVGGWTHQPLGGAGWSGIAGAGVAAWFTFLPSFIFILAGGPLVEATRDNIRMTAPLTAISAAVVGVIASLAVFFGLHVFVVAGAVQWGAIGIAAVAATALLRYQVGTVKLLFACAIAGLVLSYRGGPFQLL
>CP028324.1|AVR98185.1|5257711_5260861_+|ribonuclease-E/G
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSYGEDRHGFLPFKEVARSYFREGVDVRNATVKEALREGQEIMVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRTVEELQWDLNYLMQLWRAIEGASKGASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAHQFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQRLKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQVLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIENRHRITVILVPNKHLDTPHYKLERIKHDDPRLEDTAASYTMAEQAETDMAFAKRQKEEAKPRQEAVVKTITPSQPAPMVDRKPAEPVAPVAPPPAPVVAPPAEQGFFAKLVSFFTGKQPEPVAPPAPAIVTKPAVPAADRTDKNARGPRARGRNGKGPREEREPGSREEGVKPATAEGRPARPPRPPREPREVREPREPREAVEGQAAPAVRAERAERAERPERAERPERAPRPPREPREPREPKAQPAEAKAEELALAAAGVGPVGTGSAPAGDTPSLVKSAGTANAGPEGEEFEAGEGGDEPRRRRRRGGRNRNRREREGAEGVEGIEGETAFAAEGEGADKASVESVVVTENAAASAPVVATAAPAEPAVAAPAAEPVVQTVPQPVQQEAKPEQAPALAQAADEVVVTPVAPAVPTPVAAESAAPVEAAPAVEPAEAEIVEAPAAEPLPPVVETTPAPAPATTTPAPVEAAPVAAEAPVATPVEPKVEVPAVAEAKAEAEVSAPAPIPVQAPAPAPAAVAAPAPAADLDALLASAGLTMASTDPAKLRAAQEAAAQEAPPAPARRQRKPAPVIADEPLVQVSTRQ
>CP028324.1|AVR98184.1|5255977_5257009_-|23S-rRNA-pseudouridine(955/2504/2580)-synthase-RluC
MKDLERFSGKPTQNGPVRASGKPTATSPNTVLPQAQFVTIGEEEAGQRIDNYLLRVCKGVPKSHIYRILRSGEVRVNKGRIDQLYRLVAGDVVRIPPVRVAEKAESNVPAAEFPIVFEDAHMLVVDKPAGVAVHGGSGVSFGVIEQLRASRPDAKFLELVHRLDRETSGLLLLAKKRSALTSLHEQMRDGVTDKRYLALAVGDWKNQRQHVKLPLHKYTTADGERRVAVQADGMPSHTVFTLLRKYDNFALLEAELKTGRTHQIRVHLASSGFPIAGDDKYGDFALNKALQKSDGTRGALKRMFLHAHQITFKHPETGKIMTLNAPLAPECEKFLVSLGQPRS
>CP028324.1|AVR98183.1|5255238_5255901_-|HAD-family-hydrolase
MARKQFDLIVFDWDGTLMDSTATIVKSIQAAARDLGLPIPSREAAAHVIGLGLAEAMQVVLGPEVDPKYHPRMVERYRYHYLTKDHELTLFDGVPEMLQDLSQLGYFLAVATGKSRVGLNRALNAAGLLATFDATRCADETFSKPHPAMLQELTRELGQDLKRTVMIGDTTHDLMMAQNAGAAGIAVEYGAHPVDQLAACGPLFSAKDVPELHRWLGEHA
>CP028324.1|AVR99349.1|5254854_5255172_-|Rieske-(2Fe-2S)-protein
MGVRFPVTAGGEDATAFVIRHGGKVYAYLNRCAHVPIELDWAPGEFFESSKMYLMCSTHGAVYIPSTGQCAGGPCRGGRLRPIGVTERDEALYWQPDEFVRPARA
>CP028324.1|AVR98182.1|5253793_5254801_-|S49-family-peptidase
MSDNISPTPPSQPPASPGPGQLPINWEREVLEKLVFATIKEQRANRRWSIFFKIFLLLLVFLGIASYFNLSILGGDAEIGRHTALIEIEGNIEAEGSGAAAVVIPALNKAFADDSSVAVVLHINSPGGSPVQAGMIVDEIQRLRKGYPDKPLYAVVDEICASGGYYIAASADRIYVNKASIIGSIGVLMDGFGFTGAMDKLGVERRLLTAGENKGFMDPFSPQSPKHKEHAQEMLNEIHEQFIDVVRAGRGKRLHETPEMFSGLFWTGTRAIKMGLADDLGSVDSVARDVVKAEDIIDYTQHEGLPERVLKKFGAAVGSGAFKAAVGEAARISVK
>CP028324.1|AVR98181.1|5253178_5253466_+|hypothetical-protein
MTNESPRASHEKTMLATRVAVARGAAAQLTTNAALNRIRLRSLRTWESCTVPAMPQMGWLASSEDDLTAWLNAGGFAGGNELPPSGVGCPTKTAA
>CP028324.1|AVR98180.1|5252031_5252745_-|16S-rRNA-pseudouridine(516)-synthase
MSKLSLDRILQSQGFGTRKYCRTLIEDGEVAVNGVVQDNYKTVVDTESLVLTVFDEEWRYREHVYIALYKPANFECSRKPSHHPGVLTLLPEQFTWREVQPVGRLDHDTTGLLLMSDDGPFIHAQSSPKRHVPKVYQATTAEPVTEALVAQLLGGVQLHDEPAPLAALVCEKKGEHQLEIVLEQGKYHQVKRMLAAAGNHCSALHRSAIGGLQLDSLGLQEGEWCYLDEAQLALLAG
>CP028324.1|AVR98188.1|5265433_5266681_-|DNA-recombination-protein-RmuC
MMELYLLLGLALLILLLQVAMLLRPRAGGDIAERLDRVEREVRLQLQATAQAQRQEMTHTLAQSHAATVQQLDGMRRQIEVLTESNARRLAEVRMTLETRIRDLQTDNGARLEEMRQTVDEKLHATLESRLTESFKQVSDRLERVHQGLGEMQQLALGVGDLKRVLTNVKTRGTWGEVQLEMLLEQVLTPDQYAKNVETVAGTNARVEFALKLPGMKEGGAPVWMPIDAKFPKEQYERLLEAAERADADGVATAGRELERAVRNEAKTIAEKYVCPPQTTDFAILFLPTEGLYAEVMRRPGLADELQRVNRISIAGPSTLTALLNSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGDVLAATKTTLERAAKNIESAEVRSRQMARKLKSVEALPAEAAQMLLGRELELPEGDS
>CP028324.1|AVR98189.1|5266788_5267187_-|hemoglobin-like-protein
MAFMNETRTLYDTIGGAAKLREMVDRFYDLMELEPEFAGIRAMHPPATDGSRDKLFWFLSGWMGGPDLYQEQFGHPRLRARHLPFAVGTSERDQWLRAMAWAMEDVGIAEDLRLRLMQSFYQTADWMRNTPG
>CP028324.1|AVR98190.1|5267296_5268577_+|two-component-sensor-histidine-kinase
MRDDRLERKAGTFFAAQLRRHRNGERAAVQALVLGWAALLFHPLQFALHSWVFPQPFESPALRALGAAVGVAGIAAERMGPRYCELYVPIAVAFQLPFFSTYMFLMNDAAAAWAQWLTVATVALFHFPTQLAVRAYASGTLLACACVLLHGRGHAILTPAALQQLPVHAFVIGLLYAARVGRSALEQEKLAGMGEGLGAVAHEMRTPLASMDANVRGLTRMLQADTAGSGAQDDVRQAMTRIQYEVRHMNHLIDLFLLSANAVRRRLDPSESVSMADAVQSVLRRYPFTSPAQRGTVAVDVRANFNFAGQYELTVVILLNLLRNALKAIHRAGKGRVRIVVDGNRKPPRLLFIDTACGIAARRQPFIFHRFYAYPAHNGTGVGLALCRQIMHAWNASIRCVSRESAYAIFVLEFPVQRANVPSGEP
>CP028324.1|AVR98191.1|5268573_5269584_+|hypothetical-protein
MRLPIFAHPTTTVLVDDSDSFLKSLSFQLDPLLPSKTFHDTTMALDWFNASTRRADLPLHVNFDILNQTADQPNVAVDVRRIHDLCASHHRFTIPSVLVVDYSMPQMNGVEFCRQIEYLPCKKILFTGAADEKIAVNAFNEGLIDRFIRKSDDDALDRLELEILAMQRAFFVDQAETLRDLLALHDYSFLRCNTMASLVRELYVKHGFVEHYLHSSPTGILFLDQHGRATLMVIETEQGMHAQYEVARDNDAPQSLLTALQERRVLPFFPPEAGAGMYSVAAGEQWHRYCCAPQILQGRERYYWALFEFPGHYLESPVYPFSEFLNSRHPPCDLAA
>CP028324.1|AVR98192.1|5269638_5272170_-|ABC-transporter-permease
MLRLALRMTARDWRAGQLRFLLVALIVAVAALSAAGFFIDRLRAGLNRDAYRLLGADLVVATDQPTPQAWRDEAARRGLVHTGTTVFQSMAQAGEGEATQSTLVSLKAVGAGYPLRGRVKVTTSVDQALDSIGAPAADIPAPGTVWLDAPVLEKLQTQVGASLRLGDRTFRVAGLIASEPDRGGGFASFAPRAMMRLDELASTGLEQPGARITYRLLLAGAGTTGTQAVAAYADWLRAQVKAGNLRGVRIDTLQDGRPEMRETLERADQFLSLVGLLSALLAAVAVAMAARRFMQRHLDACAMLRCLGLTQNQVTVMYLLEFLLVGLAGSLVGVLAGFAGHYVLLEMLGRLVAADLPPATFAPALQGLAVGMLLLAGFALPPILQLRNVPHNRVIRREQAAPQPMALATHGLGLGAFLVLLLWQAGDVKLALLTALGFLAAFALFALAGWLGLLALRQVRGGIDHQAWRFAVTSLRRRPGATIVQVVALALGLMALLLLTVVRGDLMSAWRNATPPDAPNHFVINIQPDQKDEIATRLRQGGALPAPLYPMIRGRLTAVNGKPVTANTYTEERARGIAEREFNLSTMAEAPAQNDIVQGRWFTDGPGVAEASVEAGMAETLNLKLGDTMRFDVAGSPVEAKITSLRKLKWSSMRVNFFVIINPAAMADSPQTWITAFHLPKQSARLASALSRDFPNLTVVEVGGVLRQITSVLEQVIRAVEFLFAFTLASGLLVLYAALMGSQDERTREAGLLRALGATRRQLSQAQLIEFLLVGSLSGLLAASGAAAMGWGLAKYVFKFDWTFNPAVWGAGLAAGALCAIAGGWLGLRNVLNQPPLQTLREA
>CP028324.1|AVR98193.1|5272175_5273189_-|adenosine-deaminase
MNTQLLHIVRNMPKAELHIHIEGSLEPELIFALAERNGVQLAYPSVDALRAAYDFKDLQSFLDIYYAGASVLLKEQDFYDMTAAYLAKAKADHVRHAEIFFDPQTHTARGVPIGDVINGIHRACQEGPISATLILCFLRHLSEEDALATLEAALPYRDKFIGVGLDSSEVGHPPEKFARVFARCRELGLHLVAHAGEEGPPAYIETALDVLHVERIDHGVRCLEDAALTRRIAAEKMALTVCPLSNIKLRVFDTMKEHNLLQLLDAGLVATVNSDDPAYFGGYLNENFVAAFESLPLGLQHAHELAKNSFAASFLEPAKKQQFLDEVDAYFAAFNVV
>CP028324.1|AVR98194.1|5273826_5275749_+|PrkA-family-serine-protein-kinase
MTIFDNYAARYERTREEEMSLSEYLQLCKKDRLTYATAAERMLAAIGEPTLVDTRNDTRLSRIFANKVIKIYPAFREFYGMEEVIEQVVSYFRHAAQGLEERKQILYLLGPVGGGKSSIAEKLKSLMEQVPFYCIKGSPVNESPLGLFNEAEDGVILEEDYGIPRRYLRNIPSPWAVKRLHEFNGDINQFRVVKRYPSILKQVAISKTEPGDENNQDISSLVGKVDIRKLEDYAQDDPDAYSYSGGLCLANQGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTEGFGAIPFDGIVLAHSNESEWKSFRNNRNNEAFLDRIYIVKVPYCLRVSDEVKIYEKLLRNSSLAEAPCAPGTLRMMSQFAVLSRLKEPENSSIFSKMLVYDGENLKDTDPKAKSIHEYVDYAGVDEGMNGLSTRFAFKILSKVFNFDSTEVAANPVHLLYVLEQQVEREQFPPETEQKYFSYIKEHLAQRYVDFIGKEIQTAYLESYSEYGQNIFDRYVTFADFWIQDQEYRDPDTGESFDRESLNAELEKIEKPAGISNPKDFRNEIVNFGLRARANNGGKNPAWTSYEKFRTVIEKKMFSNTEELLPVISFNAKASAEDANKHADFVARMVEKGYTAKQVRLLCEWYLRVRKSS
>CP028324.1|AVR98195.1|5275847_5277116_+|hypothetical-protein
MTYLIDRRLQGKNKSAVNRERFLRRYKSQIKDAVGRAIKGRSITDIENGEKVSIPVKDVNEPSFGHAHGGVWEVVNPGNQEYQKGDQIARPKGGGGAGRGKAGNSDQTTEDDFIFELSREEFMNYFFEDLELPNLVKTQLTATTDFKTQRAGYTVSGTPSNIHVLRSLRGALGRRIAVGGPSRRQLAEAEQELETLLLDGAPLDDPKVVELKKLIHHLHTRLLAIPFIDPFDLRYSNRIKVPKPMTQAVMFCIMDVSGSMDEQRKDTAKRFFILLYLFLKRVYDKIEVVFIRHHTAAAEVDEHEFFHSRESGGTVVSSALNLLNKIIDERYGAGSWNSYVAQASDGDNWDNDSVLCRQLLTNTIMPKVQYYTYVEITDGPPQNLWEQYAQVPDHHQHFAMQKIVTPADIYPVFRELFKKQPK
>CP028324.1|AVR99351.1|5277121_5278654_+|SpoVR-family-protein
MMKRPPHPRALPEQSEWTFELIEQAHEEIKRVAQGFGLDTYPNQLEIITAEQMMDAYTSVGMPVSYNHWSFGKHFLATEKGYKRGQMGLAYEIVINSNPCIAYLMEENSLTMQALVIAHAAYGHNSFFKGNYLFRTWTDAEAIVDYMVFAKNYIAECEQRHGIDAVELLLDSCHAIQNYGVDRYKRPAKLSLAQEQQRQKEREAYLQSQVNELWRTLPRREEEEAVTQAPTRFPPEPEENLLYFIEKYAPLLEPWQRELVRIVRKISQYFYPQRQTQVMNEGWATFWHYTILNQLYDEGVVGDGFMMEFLKSHTNVVYQPPVHSQYYNGINPYALGFAMMTDIRRICENPTAEDREWFPDIAGSDWKKTLDFAMRNFKDESFIAQYLSPKLIREFHFFAVLDDDKNEKLNVSAIHDEMGYRYVRQQLADQYNLGNREPNIQVWSVNTRDDRALTLRHTQFNRRPLNQQAHEVLKHVARLWGFDVHLDTVSPEGKLISTLECKREKRGRII
>CP028324.1|AVR98196.1|5279401_5280061_+|ABC-transporter-substrate-binding-protein
MNFSDNGKVKKNYTGIVIVVALHIVAAYGIVSGLGKRMINKMVEPVETKIIEEVAPPPPKELPPPPPPPEMKAPPPPFIPPVEVNVQQPPPPQNVIANATNVKPATNQLTPPAPPAPPAPPAPPAQAVRTAAVVDFSTCAKPEWPKSSLRNEETGTVTLKFLIGVDGRVAGSEIVKSSGFRDLDKAAVAGISKCKFKPATVDGKPQEGWQSMQYVWTLE

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Crispr_ID: CP028324_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028324_13

5382040-5382134

Orphan

Consensus_repeat	Method
TGTCCCACCACGGGGTCAGTCACCAAAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028324_13

>merge|CP028324|13|5382040-5382134|CRISPRCasFinder
TGTCCCACCACGGGGTCAGTCACCAAAACGAGACACGGACTCAGCCGCCGCTGTTGATGAGGCCATGTCCCACCGCGGGGTCAGTCACCAAAACG

>CP028324|13|13|5382040-5382134|CRISPRCasFinder
TGTCCCACCACGGGGTCAGTCACCAAAACG	AGACACGGACTCAGCCGCCGCTGTTGATGAGGCCA
TGTCCCACCGCGGGGTCAGTCACCAAAACG

Protein	Signature genes	Signature genes Name	Protein_function
CP028324.1\|AVR98273.1\|5387206_5388235_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380513
CP028324.1\|AVR99360.1\|5373693_5375136_-\|RND-transporter	unknown	unknown	gnl\|CDD\|273830
CP028324.1\|AVR98263.1\|5372708_5373641_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP028324.1\|AVR98261.1\|5370987_5371866_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176166
CP028324.1\|AVR98266.1\|5378099_5378777_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
CP028324.1\|AVR98265.1\|5376775_5377996_-\|secretion-protein-HlyD	unknown	unknown	gnl\|CDD\|224482
CP028324.1\|AVR98278.1\|5393283_5395980_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
CP028324.1\|AVR98262.1\|5371976_5372612_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
CP028324.1\|AVR98272.1\|5385467_5387144_+\|tryptophan-halogenase	unknown	unknown	gnl\|CDD\|368139
CP028324.1\|AVR98275.1\|5388675_5389656_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
CP028324.1\|AVR98267.1\|5378872_5379055_+\|hypothetical-protein	unknown	unknown	unknown
CP028324.1\|AVR98264.1\|5375167_5376757_-\|EmrB/QacA-family-drug-resistance-transporter	unknown	unknown	gnl\|CDD\|129794
CP028324.1\|AVR98268.1\|5379249_5380572_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
CP028324.1\|AVR98270.1\|5382311_5382635_-\|monooxygenase	unknown	unknown	gnl\|CDD\|378051
CP028324.1\|AVR98269.1\|5380676_5382023_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341039
CP028324.1\|AVR98276.1\|5389733_5391569_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
CP028324.1\|AVR98271.1\|5382837_5385288_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028324.1\|AVR98279.1\|5396274_5397117_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|184559
CP028324.1\|AVR98277.1\|5391582_5393262_-\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
CP028324.1\|AVR98274.1\|5388290_5388599_-\|DUF1272-domain-containing-protein	unknown	unknown	gnl\|CDD\|377732

Protein	Function_ID	Function_description	E-value
CP028324.1\|AVR99360.1\|5373693_5375136_-\|RND-transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.14614e-89
CP028324.1\|AVR98263.1\|5372708_5373641_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.63491e-67
CP028324.1\|AVR98261.1\|5370987_5371866_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176166	cd08477, PBP2_CrgA_like_8, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 8. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.13705e-104
CP028324.1\|AVR98266.1\|5378099_5378777_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	1.68977e-19
CP028324.1\|AVR98265.1\|5376775_5377996_-\|secretion-protein-HlyD	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.14747e-83
CP028324.1\|AVR98278.1\|5393283_5395980_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
CP028324.1\|AVR98262.1\|5371976_5372612_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	2.60725e-46
CP028324.1\|AVR98272.1\|5385467_5387144_+\|tryptophan-halogenase	gnl\|CDD\|368139	pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.	1.15731e-152
CP028324.1\|AVR98275.1\|5388675_5389656_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	8.48322e-73
CP028324.1\|AVR98273.1\|5387206_5388235_+\|transcriptional-regulator	gnl\|CDD\|380513	cd06290, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	4.54085e-125
CP028324.1\|AVR98264.1\|5375167_5376757_-\|EmrB/QacA-family-drug-resistance-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.37862e-114
CP028324.1\|AVR98268.1\|5379249_5380572_+\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
CP028324.1\|AVR98270.1\|5382311_5382635_-\|monooxygenase	gnl\|CDD\|378051	pfam08803, ydhR, Putative mono-oxygenase ydhR. ydhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase.	0.00428983
CP028324.1\|AVR98269.1\|5380676_5382023_+\|MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.62235e-75
CP028324.1\|AVR98276.1\|5389733_5391569_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
CP028324.1\|AVR98271.1\|5382837_5385288_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.23787e-49
CP028324.1\|AVR98279.1\|5396274_5397117_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|184559	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase.	0
CP028324.1\|AVR98277.1\|5391582_5393262_-\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
CP028324.1\|AVR98274.1\|5388290_5388599_-\|DUF1272-domain-containing-protein	gnl\|CDD\|377732	pfam06906, DUF1272, Protein of unknown function (DUF1272). This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.	1.56022e-31

>CP028324.1|AVR98269.1|5380676_5382023_+|MFS-transporter
MPNEAQTLTANDAGVAVPRSAGRRTSPLLWVPTGYFTMALAYVMLTNVTAIMFKNLGMDNGRAAEYASYLILAYTIKPLFAPFVEMYRTKKFFVLWTQVILAAGFGCVALAMSLPGYMAIMVALFILLSFIGATQDIAADGVYVTSLDTRSQSLYCGIQSLSWNVGPIVASGGLVYLSGWLHTNTFHHDAGTFGPAWIDSWRIIFFIVAGVTLAMAAWHLKTMPDGAKAENAPSSVADAWFILKDSFVTFFQKRDVWLMIGFGFLFRLSIGLLEKIGPFFMVDPVAKGGLGLSNEQLGLFYGTYGLVAVLIGSLLGGMFVAKRGLKPTLFLLCCAVNIPNVTFLLMAMFQPTDVYVISAGVAIEKFFYGFGSVGFMIYLMQQLAPGKYTTTHYAFGTGLMGLCMMVTGLVSGHLQQLLGYVNYFWFVMAATIPSFLVTWFAPFHHKEG
>CP028324.1|AVR98268.1|5379249_5380572_+|beta-glucosidase
MTDQLQFPPSFTWGVATSAFQIEGGASADGKGPSIWDTFSHTPGKIIDGSNGDIACDHYHRFPEDVALMASLHVDAYRFSMAWSRVQPTGKGAWNEAGFGFYEKLLDELDSKNIAAHVTLYHWDLPQGLQDEGGWLNRDTAYRFAEYAAEVARRFGSRVKTISTHNEPWCTANLGYGNAQFAPGVADLQQSIQVSHHLLLSHGLAIKAMRAVGSAAQLGIVLNQWTSDPATDSQADRDLAAFEYSRSVEWFMDPIFKGHYPELALRAHGANAPAVQDGDFDIIRQPIDFLGVNYYFRHYASAETPPRQPEAKLGKTDMGWEIYPQGLTELLVKLHGQYQLPPIYITENGMANPDQVVAGQVMDTQRIDFVQRHLAALLEAMRQGVNVQGYFLWSLLDNFEWNSGYAKRFGIVHVDYATQQRTPKASALWYREFIDGQRRG
>CP028324.1|AVR98267.1|5378872_5379055_+|hypothetical-protein
MSRIDRLEWSQKVASLNECIRGFQANPSKEQLDRAISELRAYAEAASDGDMEIPSRFVAN
>CP028324.1|AVR98266.1|5378099_5378777_+|TetR-family-transcriptional-regulator
MSDEQAIESSHRCPLDPGTRGAGRPRACDAEARTQELINSAGELFLEKGYAKVSLEMIARRARVAVRTIYVKFGGKSGLFREVLLSGRNAYFATMEDLGTNRRPIREVLIDFGVRIHDMLSSPTAIQLYRMVIAEAHRDPELAEAFYEAGPRQTRDALSRYFTRPDVRSQFRADIPPEQLTIHLINCLMGDHLKRYLFNPQAGGEREDALLVEQRVDLFLRGAQS
>CP028324.1|AVR98265.1|5376775_5377996_-|secretion-protein-HlyD
MSNNAQTPFHFSERHHVQSAQPRRSQSAQRSAPGTPAPAAAPVKKQPNRKVVVVAGLIAIAALAAGGRMWYRSTHFVETENAYVAGHVHPVSSRIAGIVTKVLIEDNQIVREGDVIAELDPFDQRVKVEQIQAQIASAQTQVMQAEAQIAQVNAQASAAQAQVKQAEALLVRANQDAQRYSQLFTSQMKAVSKAELDAATATRASAVADVAARKDSAAAAKAQIAAATSARDVLKAQIDVLKVQLKDAEQQLAYNKVLAPVSGRVGKRNVEVGQRVQPGQQLTALVQDNVWVTANFKETQLAEMHVGQPVHISVDALPGKELVGRVDSFAPASGAQFALLPADNATGNFTKIVQRVPVKITLQPADLKALSGRLVPGMSVIAEVELGDDKAADARHAQAGNTAAAH
>CP028324.1|AVR98264.1|5375167_5376757_-|EmrB/QacA-family-drug-resistance-transporter
MSSTQAPPAFVPVTGAVSSRTWVAVAAGMLGAFMAVLDIQITNSSLKDILGSLSATQEEGSWISTAYLVAEIIVIPLTALLTRVFSLRGYMMGTTALFLVFSTLCGFAWNLESMIVFRMMQGFTGGALIPMAMTLVMVKLPASKRATGMALFGLTATLAPAMGPTLGGYLSELYGWPSIFYINWIPGLLLMAGIAYGLDKEAKRLDQLWNADWLGIGFMALGLGSLTIFLEEGNSKDWFDSAFIITFAGLAIVGLLGWIVTSTTREHPFVDLRLYGQRNFLVASVLSAVMGMGLYGSSFLLPLFLGQIAGYSPMQIGEVIMWVGLPQLFIMPFAAKLSGKVDNRILCSIGLLLFGGSCLMNAYMDATTGYDQLMLSQIIRALGQPFVMLTLSNFAMNGIAPKDVPSASSLSNMTRNLGGSIGIALLATSLTQREHFHSQRLGESITGFSLATQQRLDQLTQSFVAQGFDPVNAADKALKAIDGIVRRESFVMAYNDGFFLVGGILLSCILILWLSDKVKSPSGGGGGAH
>CP028324.1|AVR99360.1|5373693_5375136_-|RND-transporter
MKKISLAVASATLLLSGCATVGNDFKAPANVAAPTFSNAAGDAAAAHLPREWWSVFGDATLAELEQRALRDSPTVQAAAQRLLQGEAQLGVVRANEGPQLNVSAGVSNSRTSANTSQGIALGRRAISGNNYSVGTGFSYEIDLLGRVRRAVEAADAQALAAQADRDGVLTMLTTQVATTYFQLRGLDAEMAILRGALDTRRETEQLVTARFEAGLSNELDTARARIERANAEADLEEVQRQRNALEHGLAVLLGASPTTPVLPAAQGARLPQPPAIPVGLPASLLGQRPDLAASVASLKAANAQVGVAEGAFYPSVSLTGNFGFASESLSEIAKGGSRQFSFGPLAVSLPILDGGRNKANLAAAKARYEEAVANHQERLLTALREVEDALSDVRQKQQQDKVQGVSREAAQRAYLVARARYERGLSTYLDVTDAQRSALAADRAGVQIGTQRLLAAVSVARALGAGWQPEGRLATLAQAR
>CP028324.1|AVR98263.1|5372708_5373641_+|LuxR-family-transcriptional-regulator
MPRKFDHLSDVEVLLNVVEHGSLTAAAVVLATTPSVLSRAVARLEARLGTQLLRRTTRSMGLTEAGRQYVDEARAAFALLDEAEHAIRGSAGQLTGRVRLSAPTSYGHQRLPALLAIFARQYPLVQLELNITNRNVDLAAEGFDLAIRSGPLPDSSMVAHRLEDARVVLSASPAYVAQAGPLETFEDLQRQRCIAFLRPSTGRVSPWHLQVDGREIDWIPPSALAVSDDVMGVVSLAEQGLGITMCPQFMIERSVESGRLVEVLPQLPCRNRPFSVVFAPHRNLSPAARALIDTLVAATRPQKIPGQSRS
>CP028324.1|AVR98262.1|5371976_5372612_-|NAD(P)H-dependent-oxidoreductase
MQLLDKLQWRYATKAMDAERAVPADKVERMLEAARLAPTSSGLQPFEILVVTNAELREKIKAVAWNQAQVTDGSHLLVFAAWDDYTPERINAMFDYTNDVRGFKNEGWEAYRQQLLATYPGRGTQVNFEHAARQAYIGFGAAVIAAAFEEVDCTPMEGFDPAAVDEILGLRARGLKSVVMLPLGYRKAENDWLVNLPKVRRPRAQFITEVA
>CP028324.1|AVR98261.1|5370987_5371866_+|LysR-family-transcriptional-regulator
MDKLKSMQVFVAAVDAGSFAGAAERCAMSAVMVGKHIRQLETLLGASLLTRTTRRHALTEIGRQYAAQCRQILAQIDAAESIAESMRAAPRGLLRVTAPVSFGAQWLSPAVADYLARGPDVAVELNLNDRMVDMVEEGFDVALRVGPLPDSGLVARPLRPYGMTICAAPSYLARHGTPQTPADLAAHECLEFTGWDAQTRWQLKGEKDGRHVRPGRIRANNTQALRMAALAGFGIVMQAETILRPDIAAGLLVPLLQDYLPPPRPMHVLYSRDRQATPKLTTFVEFLLERFG
>CP028324.1|AVR98270.1|5382311_5382635_-|monooxygenase
MIIAITSFALPKPISREEAQRIFMSTAPTYQGVDGLLQKHYVLSEDGATAGGVYFWKTREAAEAMYTPAWRAFVREKYGTEPTVTYFDSPVVVDNVTGQVFQNEAGG
>CP028324.1|AVR98271.1|5382837_5385288_-|TonB-dependent-receptor
MNTATPRARKLGSPIRLAVLTLLAGLNAAQAQTAGVNATPEAPKEQQQAQKATEASSTVIPEVYVTATKRSTSLQRTPVAVTAISAAALDDNHVQTIQDVVNLVPGFSATSQGDHGVITMTMRGIGNDSAKTEYADPEVAVFVDGIYSPRPEGATTLLFDLDGIEVLRGPQGTLWGRNSTVGAVNMQTAKPTLGSNSGYVEAGMGDYARVGGRGAFNIPLSDTAAMRVAFVHEQHDGYVDYQTPPNIPLVQQQAAAAPVIAAANAAHPNNPIAFQPLNNANFVQGGPKYNAQDQTALRLSLLWEIMPSLHWNVAYERYQDRGTPSMNLMQTPRAGQDLWSALIDTAPSLKRDSNSVRSRVDWAINPDMALAYIAGWSSFRGSSTYDQDGGSYVPTSFTTGGKSQANNTLLSKYKSYSHEVELQSTGKKQVDWLLGLYYGHENNAMRFDIPIMNGTQSGTVNWQGSFIQPKETVDSKAVFGQATWNLTDQWHLTGGARYTKDKRENIGGIGWGWNDKADVPQLPISPSTNPADAGSGFAVSSRNSGSFSGSKATWLGRVSYDITPTSMLYASVSTGYKSGGLQDGGIPYGQETLTNYELGSKSTFMNGMIRINNALYYEKFKGFQFSAPVTNPDGSHSLSTFNAEGAKVYGLETEIAAKLTKADRLQFTASYTHAELGALIGGSNDYTLPACSIPGISNCLDVTGNTMPHSPKWSTQLMYQHVFQLPAGTLTPRLSAHWESSSWLSVFNLGEPDRQGSYSKIDLGLRYDADKKYYVDLFVRNAADKNIKTSAQNPQGVWQAQYLPPRTIGFNAGYTF
>CP028324.1|AVR98272.1|5385467_5387144_+|tryptophan-halogenase
MSVGWRQQPSPCPTAGSGTKTGHEPDNRTWRRQTLQPVRNILIVGGGTAGWLAAGFLAKTLGTQGGGIAITLVESKDIGIIGVGEGTFPSIRGTLSVLGIDEGRFIRECSATFKQGVRFNHWVRAPGTQGADHYFHPFSQPSQRPGGPELLPYWLLGAAGADVPFAAAVTMQKHVADMSHGPKRIGDADFMGPLNYAYHFDAGAFATLLASHAQTLGVRRVEGTVDQVKLDDAGAIASVVTREAGELTAALFIDCTGFRARLIGEALGSPFRNINDTLFVDRALAMQVPYQRPDAPIPSYTISTAHEAGWTWDIGLHERRGIGYVYSSRHTSDDRADQLLRQYIGPASDGREPRLLKLNVGYRETQWVKNCVAIGLAGGFLEPLESSGIGLIEAATYLVSYLFPYDGNLAPAAKLFNAQMKARYERIVDFVKMHYCLTQRTDNAFWIENAHASTIPESLREQLAMWRARAPHRLDFVTDIEMYPPSSWQYVLYGMEFPTRQMAHRAALPEVAAARREFQTIAQLSQHALADLPTHRALVEYYRQGGAKAAAPVRRLYV
>CP028324.1|AVR98273.1|5387206_5388235_+|transcriptional-regulator
MSSDDHTNPTTLLDVARAAGVSASTVSRILNGTARVADDKRKAVLAAIEQMNFAPNQMARSLKKGSTMTIGIVVQDISSPFFDETLRGVDDALKGTGYTSVIVSGHWNADEESDRIRLLLARKVDGIILLTGRIPDERVLQFSNHRPIVATGRALRTANAIGFKVDNEHGAWLATRHLLELGHRRIVFITGPASSSDANERLAGYRRAMAEADVAVDPQLVVEGDFHEPSGLAAINRLLERDVPFTAVFAANDLSAYGARLALYRKGIRVPEDVSLVGFDDLPGSSYTAPPMTTVRQPLYDLGKAATNALLSLMGREAFDEGVAPVELIVRETTAPAAAENR
>CP028324.1|AVR98274.1|5388290_5388599_-|DUF1272-domain-containing-protein
MLELRPACEHCNKALPPAATDARICSYECTFCADCVDGLLQNVCPNCGGGFVPRPVRPARNWKNDNYLGHDPARIEPKYRPVDPAAHAAFAAAIKHIDPEAR
>CP028324.1|AVR98275.1|5388675_5389656_+|AraC-family-transcriptional-regulator
MPSPIDIWLLVFPGFVLLDATGPLQVFASANDEARDAGLPPPYRIHVIAPGDGAVTSSAGVALVTAPLPRAGVRGGTLIVSGAGTADLPTGASAEGRALLRWVARAAGPAARCCSVCTGAFVLARAGLLDGRRAVTHWQDVATLRAEHPAIDVQDDAIHVRDGKFHTSAGISAGMDLALSLVEQDLGRAAALAVARRMVLFLKRPGGQRQFSAELLAQSAEDGVGARLTAWLRPRLQQVIDVEQMASACALSVRTLHRRLREELDVTPAQLLAQLRMELACQLLERPGMTVKQAARRSGHGSEYNLRRAFVLKLGVLPSEYQARFG
>CP028324.1|AVR98276.1|5389733_5391569_-|dihydrolipoyl-dehydrogenase
MSIVEVKVPNIGDFKEVEVIEVMIKPGDTIKVDQSLVTVESDKASMEIPSTHAGVVQELKIKVGDKVSEGSLLLMVEEAAGAAAAPAGAPAAPVAKPEEKGAAPGQAAPVYGGPAVPAPASTPASAPAPGAGSFAGQADVVCDMMVLGGGPGGYSAAFRAADLGMNTVIVERYATLGGVCLNVGCIPSKALLHLASVVDETAHLGKHGVKFARPEIDIDEVRAYKEGVINKMTGGLTGMAKARKVQVVQGVGQFLSPNHIEVTAGDGTKKVVQFKQAIIAAGSSVVKLPFVREDPRIVDSTGALELRFMPKRMLVIGGGIIGLEMATVYSTFGARIDVVEMMDGLMQGADRDAVKVWQKYNAHRFDNVMTKTKTVGVEALPEGIKVTFEAAEAGATAPEPQLYDMVLVAVGRSPNGKKIAADKAGVRVTDRGFIEVDSQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAAAGQKSHFDVKVIPSVAYTDPEVAWVGLTEDEAKAKGIKVEKGHFPWAASGRAVANGREEGFTKLLFDAETHRIVGGTIVGTHAGDMIGEIALAIEMGCDGTDIGKTIHPHPTLGESIGMAAEVYEGVCTDLPPPRKR
>CP028324.1|AVR98277.1|5391582_5393262_-|dihydrolipoyllysine-residue-acetyltransferase
MSIVEVKVPDIGDFKEVEVIELMVKVGDTIKVDQSLVTVESDKASMEIPSSQAGVIKEIKVKVGDKVAEGSLLLMVEADGAGAAPAPAAAPAAAAPAPAAAAPAPAAAPAAAPAGSSGPVDVKVPDIGDFKEVEVIEVMVKVGDTIKKDQSLITVESDKASMEIPSSHDGVVKEIKVKVGDKVAEGSLVLVVESSGGAAAPAPAPAAAPAAAAPAPAAAAAPAPAPAAAAPAPAPAAAAPAAPGVSGKLAHASPSVRKFARELGVDVGRVPGSGPKGRITQQDVQNFVKGVMAGTTAAPNAPTAAPAGGGAGLNLLPWPSLDFSKFGETELQPLPRIKKISGPNLHRNWVMIPHVTQFEDADITDLEAFRVESNAANAKNKEATKLTMLAFVIKASVAALKKYPSFNSSLDEKGENLILKKYYNIGFAADTPNGLVVPVIKNADQKSVTQIAKEMTELSLQAREGKLKPTDMQGATFTISSLGGIGGTHFTPIVNAPEVAILGLSKASMKPVWDGKQFAPRLMMTLSLSYDHRVVDGASGARFAVYLADVLADMRKILL
>CP028324.1|AVR98278.1|5393283_5395980_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSAQLDQVTAQTANDPDAQETKEWLEALEAVLENEGPERAHYLMERMVDLARRRGALIPFSANTAYVNTIPAHVGAHCPGNLEYEERLRSWMRWNAMAMVVKANRADGDLGGHLSSFASLANMLGIGFNHFWRAPSEEHGGDLLYLQGHSSPGIYARAFLEGRLTEEQLLNFRREVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPLMAIYQARFLKYLHARGIANTDGRKVWAFCGDGEMDEPESMGAIGMAAREQLDNLVIVVNCNLQRLDGPVRGNGKIIQELEADFRGAGWNVVKVIWGPGWDELLAKDKEGILQRVMMETVDGEYQNYKAKDGAYVRKHFFGKHPKLLEMVANMSDDDIWRLTRGGHDPHKIYAAFKVAQEAKGRPTVLLVKTVKGFGMGKSGEARNTAHQTKKLDDEAIREMRDRFNIPIPDDKLAEIPFFKPSDDAPEIKYLHERRKALGGYLPQRRMKADETLVVPPLDAFKAVLEATPEGREISTTQSFVRIITALLRDQSLGQRIVPILVDESRTFGMEGLFRQIGIFNQQGQLYEPVDKDQVMYYREDKAGQILQEGINEAGGMSSWIAAATSYSTNNRVMIPFFTYYSMFGMQRIGDLAWAAGDMRARGFMMGGTAGRTTLNGEGLQHEDGHSHLFAAAIPNCVPYDPTFGHELAVIIHDGLRRMVTEQEDVFYYITIMNENYAHPGLKAGQEEGILKGMYLLQEGSKDAKERVQLIGSGTILRESIFAAELLEKDWGIAADIWSAPSLTLVAREGQDAERWNLVNPTKEQRVPYVTGLLQNTQGPIVATTDYMRLFAEQIRPYMPKGRSYKVLGTDGFGRSDSRAKLREFFEVNRYYITVAALRSLADEGKIDLAVVEQAVAKYGLNPNKPNPVTQ
>CP028324.1|AVR98279.1|5396274_5397117_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MPAQLIDGIALSQQLRAEIASRAAALTARGKQPGLAVILVGEDPASQVYVRNKVKACGDVGIHSVLEKYDADLTEAALLERIAALNADPAIHGILVQMPLPKHINPHKVIEAISTSKDVDGYSVLSAGELMTGLDGFRPCTPYGCMKLIETTGIDLRGKHAVVIGRSNTVGKPMALLLLQANATVTICHSATPDLGLYTRQADVIVAAVGRRNTLTADMVKPGAIVIDVGMNRDDNGKLCGDVDFAGIREVAAHITPVPGGVGPMTITMLLMNTIESAER

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP028324_7	7.1\|3193092\|36\|CP028324\|CRISPRCasFinder	3193092-3193127	36	CP028324.1	4333928-4333963	2	0.944

1. spacer 7.1|3193092|36|CP028324|CRISPRCasFinder matches to position: 4333928-4333963, mismatch: 2, identity: 0.944

gaaacgggacacgagcccggccgttgcaatagttca	CRISPR spacer
gaaacgagacacgagcccggccgttgcgatagttca	Protospacer
******.********************.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028324_1	1.1\|130330\|25\|CP028324\|CRISPRCasFinder	130330-130354	25	NZ_CP046706	Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence	140438-140462	5	0.8
CP028324_2	2.1\|563320\|30\|CP028324\|CRISPRCasFinder	563320-563349	30	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	239068-239097	6	0.8
CP028324_2	2.2\|563394\|29\|CP028324\|CRISPRCasFinder	563394-563422	29	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	326346-326374	8	0.724
CP028324_2	2.2\|563394\|29\|CP028324\|CRISPRCasFinder	563394-563422	29	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	384635-384663	8	0.724

1. spacer 1.1|130330|25|CP028324|CRISPRCasFinder matches to NZ_CP046706 (Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence) position: , mismatch: 5, identity: 0.8

gcggcagtgattgatggctgagctt	CRISPR spacer
tgttcagtgattgatggttgagctt	Protospacer
    *************.*******

2. spacer 2.1|563320|30|CP028324|CRISPRCasFinder matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 6, identity: 0.8

cgacggtactccacagacctacgcctcagt	CRISPR spacer
cgacggtaatccaaagacctacgaaacagg	Protospacer
******** **** *********   ***

3. spacer 2.2|563394|29|CP028324|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.724

ggagcgtacgcaggcgactacagccgggc	CRISPR spacer
ctttccgtcgccggcgactacagccgggc	Protospacer
    *   *** *****************

4. spacer 2.2|563394|29|CP028324|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 8, identity: 0.724

ggagcgtacgcaggcgactacagccgggc	CRISPR spacer
ctttccgtcgccggcgactacagccgggc	Protospacer
    *   *** *****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3387822 : 3452928

Escherichia_phage(25.0%)

plate,transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR96794.1\|3387822_3389166_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AVR96795.1\|3390163_3390667_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AVR96796.1\|3392196_3392688_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AVR96797.1\|3392734_3393226_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AVR96798.1\|3393229_3395074_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AVR96799.1\|3395037_3396132_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AVR96800.1\|3396147_3398805_+	type VI secretion system ATPase TssH	A0A1C3S747	Escherichia_phage	4.4e-93	31.6
AVR96801.1\|3399039_3399276_-	hypothetical protein	NA	NA	NA	NA
AVR96802.1\|3399857_3404726_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	4.0e-44	50.0
AVR96803.1\|3405001_3406915_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
AVR96804.1\|3406981_3408022_-	type VI secretion system protein TssA	NA	NA	NA	NA
AVR96805.1\|3408040_3408829_-	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
AVR96806.1\|3408831_3409818_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
AVR99216.1\|3409814_3413705_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AVR96807.1\|3413733_3414144_-	hypothetical protein	NA	NA	NA	NA
AVR96808.1\|3414241_3415039_-	peptidase M15	NA	NA	NA	NA
AVR96809.1\|3415296_3416205_+	hypothetical protein	NA	NA	NA	NA
AVR96810.1\|3416874_3417381_+	transcriptional regulator	NA	NA	NA	NA
AVR96811.1\|3417370_3419059_+	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.3e-38	27.0
AVR99217.1\|3419131_3420052_+	hypothetical protein	NA	NA	NA	NA
AVR96812.1\|3420072_3420858_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
AVR96813.1\|3420857_3421418_+	thioesterase	NA	NA	NA	NA
AVR96814.1\|3421414_3422689_+	hypothetical protein	NA	NA	NA	NA
AVR96815.1\|3422770_3425098_+	diguanylate cyclase	NA	NA	NA	NA
AVR96816.1\|3425197_3425743_+	hypothetical protein	NA	NA	NA	NA
AVR96817.1\|3426462_3427317_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
AVR96818.1\|3427313_3429623_-	formate dehydrogenase	NA	NA	NA	NA
AVR96819.1\|3429789_3430743_+	hypothetical protein	NA	NA	NA	NA
AVR96820.1\|3431030_3431501_-	DUF1854 domain-containing protein	NA	NA	NA	NA
AVR96821.1\|3431487_3433773_-	ABC transporter	W8CYL7	Bacillus_phage	5.5e-60	33.4
AVR96822.1\|3434002_3436183_+	cyanophycin synthetase	NA	NA	NA	NA
AVR96823.1\|3436225_3438796_+	cyanophycin synthetase	NA	NA	NA	NA
AVR96824.1\|3439010_3440105_-	LacI family transcriptional regulator	NA	NA	NA	NA
AVR96825.1\|3440250_3440472_-	hypothetical protein	NA	NA	NA	NA
AVR96826.1\|3440639_3441890_+	heat-shock protein	NA	NA	NA	NA
AVR96827.1\|3441899_3442523_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA
AVR96828.1\|3442750_3444130_+	hypothetical protein	NA	NA	NA	NA
AVR96829.1\|3446213_3448412_+	S9 family peptidase	NA	NA	NA	NA
AVR96830.1\|3448568_3448868_-	hypothetical protein	NA	NA	NA	NA
AVR96831.1\|3448950_3449955_+	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
AVR96832.1\|3450056_3451031_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
AVR96833.1\|3451221_3452928_+\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_2

5663518 : 5671672

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR99376.1\|5663518_5665333_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.1e-67	35.4
AVR98465.1\|5665421_5665871_-\|tRNA	glutamyl-tRNA amidotransferase	A0A292GL36	Xanthomonas_phage	6.8e-23	44.5
AVR98466.1\|5666002_5666215_-	30S ribosomal protein S21	NA	NA	NA	NA
AVR98467.1\|5666418_5667627_-	aminoacetone oxidase family FAD-binding enzyme	NA	NA	NA	NA
AVR98468.1\|5667755_5668292_+	superoxide dismutase [Cu-Zn] SodC2	Q9MC02	Salmonella_phage	7.5e-37	53.9
AVR98469.1\|5668437_5669415_-	DNA-binding protein YbiB	A0A2H4JBY5	uncultured_Caudovirales_phage	2.1e-24	34.7
AVR98470.1\|5669490_5670549_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	1.2e-81	47.9
AVR98471.1\|5670640_5671672_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.5e-97	54.0

DBSCAN-SWA_3

5734926 : 5742652

Acinetobacter_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVR98518.1\|5734926_5736423_+	anthranilate synthase component I	S4VT78	Pandoravirus	8.8e-43	30.6
AVR98519.1\|5736424_5736988_+	anthranilate/aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	5.1e-68	62.1
AVR98520.1\|5736998_5738036_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.1e-76	46.1
AVR98521.1\|5738046_5738688_+	lysine transporter LysE	NA	NA	NA	NA
AVR98522.1\|5738710_5739511_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.5e-60	51.0
AVR98523.1\|5739513_5740002_+	DUF1579 domain-containing protein	NA	NA	NA	NA
AVR98524.1\|5740151_5740886_-	hypothetical protein	A0A0P0I4A4	Acinetobacter_phage	2.0e-40	38.1
AVR98525.1\|5741005_5741356_-	hypothetical protein	NA	NA	NA	NA
AVR98526.1\|5741473_5742652_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.5e-16	33.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028324

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection