CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	0 crisprs	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	0	0	12	0
CP028164	Staphylococcus aureus strain CFSAN064038 plasmid pGMI17-006, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

94923 : 140138

Staphylococcus_phage(92.54%)

head,capsid,integrase,portal,terminase,tail,holin,protease

attL 86356:86371|attR 145562:145577

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
86356:86371	attL	NA	NA	NA	NA
AVR99535.1\|94923_96378_-	CHAP domain-containing protein	A0A0N6WMR3	Staphylococcus_phage	7.5e-289	99.6
AVR99536.1\|96389_96692_-\|holin	phage holin	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AVR99537.1\|96827_97127_-	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AVR99538.1\|97172_97337_-	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AVR99539.1\|97329_97719_-	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AVR99540.1\|97718_99185_-	DUF2479 domain-containing protein	A0A2I6PES7	Staphylococcus_phage	5.8e-273	99.8
AVR99541.1\|99184_101095_-	hypothetical protein	A0A2I6PF35	Staphylococcus_phage	0.0e+00	100.0
AVR99542.1\|101110_101401_-	hypothetical protein	A0A2I6PF46	Staphylococcus_phage	2.1e-49	100.0
AVR99543.1\|101400_102984_-	peptidase	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	99.8
AVR99544.1\|102992_103817_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AVR99545.1\|103816_110017_-\|tail	phage tail tape measure protein	A0A1X9IGU9	Staphylococcus_phage	0.0e+00	99.2
AVR99546.1\|110030_110189_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AVR99547.1\|110230_110581_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AVR99548.1\|110638_111094_-\|tail	phage tail protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AVR99549.1\|111185_111827_-\|tail	phage tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AVR99550.1\|111861_112257_-	DUF3168 domain-containing protein	Q4ZCL5	Staphylococcus_virus	8.8e-67	100.0
AVR99551.1\|112257_112659_-	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	2.3e-67	99.2
AVR99552.1\|112655_112988_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	6.2e-58	100.0
AVR99553.1\|112999_113278_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AVS02133.1\|113346_114510_-\|capsid	phage major capsid protein	A0A2I6PDD7	Staphylococcus_phage	9.4e-218	100.0
AVR99554.1\|114521_115295_-\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	3.9e-135	98.4
AVR99555.1\|115278_116517_-\|portal	phage portal protein	A0A2I6PER5	Staphylococcus_phage	4.5e-234	99.8
AVR99556.1\|116521_118213_-\|terminase	terminase large subunit	A0A1X9IGU0	Staphylococcus_phage	0.0e+00	100.0
AVR99557.1\|118202_118508_-\|terminase	phage terminase small subunit P27 family	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
AVR99558.1\|118635_118950_-	HNH endonuclease	Q8SDQ2	Staphylococcus_virus	1.9e-56	100.0
AVR99559.1\|119106_119544_-	transcriptional regulator	A0A2K9VBV2	Staphylococcus_phage	7.9e-77	99.3
AVR99560.1\|119556_120924_-	ATP-dependent helicase	A0A2I6PE95	Staphylococcus_phage	3.9e-263	99.8
AVS02134.1\|120904_121195_-	VRR-NUC domain-containing protein	M1T308	Staphylococcus_phage	4.9e-51	100.0
AVR99561.1\|121328_121433_+	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	1.8e-11	97.1
AVR99562.1\|121535_123983_-	hypothetical protein	Q4ZCG0	Staphylococcus_virus	0.0e+00	99.3
AVR99563.1\|124037_124244_+	hypothetical protein	A0A1X9IGZ9	Staphylococcus_phage	7.6e-30	100.0
AVR99564.1\|124270_124471_-	DUF1514 domain-containing protein	A0A2I6PEP5	Staphylococcus_phage	4.9e-26	100.0
AVR99565.1\|124538_124691_-	transcriptional regulator	M9QRS7	Staphylococcus_phage	7.6e-19	100.0
AVR99566.1\|124687_125083_-	hypothetical protein	M9QX07	Staphylococcus_phage	1.7e-65	99.2
AVR99567.1\|125066_125303_-	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
AVR99568.1\|125327_125564_-	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	1.1e-35	100.0
AVR99569.1\|125600_126143_-	dUTP pyrophosphatase	Q4ZD81	Staphylococcus_virus	1.5e-96	100.0
AVR99570.1\|126147_126384_-	hypothetical protein	C8CH04	Staphylococcus_phage	1.1e-35	100.0
AVR99571.1\|126376_126685_-	hypothetical protein	Q4ZBK6	Staphylococcus_phage	8.1e-52	100.0
AVR99572.1\|126681_127029_-	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
AVR99573.1\|127025_127427_-	hypothetical protein	A0A0N7E0T5	Staphylococcus_phage	4.6e-71	99.2
AVR99574.1\|127429_127636_-	hypothetical protein	A0A2K9VBT9	Staphylococcus_phage	3.0e-34	100.0
AVR99575.1\|127649_127892_-	hypothetical protein	Q8SDR2	Staphylococcus_virus	3.6e-39	98.8
AVR99576.1\|127906_128107_-	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
AVR99577.1\|128109_128367_-	DUF3310 domain-containing protein	A0A2I6PEN5	Staphylococcus_phage	2.6e-43	100.0
AVR99578.1\|128366_128768_-	PVL family protein	A0A2I6PEL5	Staphylococcus_phage	1.2e-68	100.0
AVR99579.1\|128767_128953_-	DUF3113 domain-containing protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AVS02135.1\|128965_130918_-	DNA polymerase	M9QT72	Staphylococcus_phage	0.0e+00	99.2
AVR99580.1\|130986_131544_-	DUF2815 domain-containing protein	A0A2K9VBT2	Staphylococcus_phage	1.3e-92	95.7
AVR99581.1\|131570_132737_-	DUF2800 domain-containing protein	M9QWZ9	Staphylococcus_phage	1.2e-220	99.5
AVR99582.1\|132733_133096_-	hypothetical protein	A0A2I6PF03	Staphylococcus_phage	4.9e-56	100.0
AVR99583.1\|133110_133434_-	TrmB family transcriptional regulator	A0A2I6PF12	Staphylococcus_phage	5.9e-53	100.0
AVR99584.1\|133512_133674_-	DUF1270 domain-containing protein	A9CR58	Staphylococcus_phage	1.1e-20	98.1
AVR99585.1\|133686_133950_-	helix-turn-helix domain-containing protein	M9QRR6	Staphylococcus_phage	9.7e-46	100.0
AVR99586.1\|133974_134190_-	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AVR99587.1\|134244_134610_+	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	1.2e-62	99.2
AVR99588.1\|134578_134824_-	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
AVR99589.1\|134879_135089_+	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
AVR99590.1\|135078_135222_-	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
AVR99591.1\|135250_136027_-	transcriptional regulator	A0A2I6PD87	Staphylococcus_phage	1.1e-140	100.0
AVR99592.1\|136040_136277_-	XRE family transcriptional regulator	A0A2I6PD81	Staphylococcus_phage	1.5e-37	100.0
AVR99593.1\|136428_136743_+	XRE family transcriptional regulator	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
AVR99594.1\|136755_137217_+	toxin	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
AVR99595.1\|137234_137819_+	hypothetical protein	A0A2I6PD77	Staphylococcus_phage	6.9e-68	99.5
AVR99596.1\|138049_138196_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.7e-15	93.8
AVR99597.1\|138192_138807_-	ATPase	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
AVR99598.1\|138932_140138_+\|integrase	site-specific integrase	A0A1X9H094	Staphylococcus_phage	1.6e-220	99.0
145562:145577	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1233439 : 1316014

108

Staphylococcus_phage(84.42%)

head,capsid,integrase,portal,terminase,tail,holin,protease

attL 1243560:1243577|attR 1269334:1269351

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS00579.1\|1233439_1234183_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVS00580.1\|1234357_1234642_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
AVS00581.1\|1234717_1236334_+	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
AVS00582.1\|1236874_1237054_+	hypothetical protein	NA	NA	NA	NA
AVS02179.1\|1237335_1237677_+	hypothetical protein	C8CH40	Staphylococcus_phage	3.3e-22	47.8
AVS00583.1\|1238215_1239523_-	potassium transporter KtrB	NA	NA	NA	NA
AVS00584.1\|1239598_1239781_+	hypothetical protein	NA	NA	NA	NA
AVS00585.1\|1239905_1241129_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AVS00586.1\|1241560_1242616_+	succinyl-diaminopimelate desuccinylase	A0A2I6PER8	Staphylococcus_phage	8.7e-37	35.4
AVS00587.1\|1242637_1243654_+	beta-channel forming cytolysin	A0A2I6PER8	Staphylococcus_phage	1.1e-25	29.3
1243560:1243577	attL	NA	NA	NA	NA
AVS00588.1\|1244797_1245835_-\|integrase	site-specific integrase	A7TWL3	Staphylococcus_phage	1.1e-177	99.4
AVS02180.1\|1246025_1246739_-	toxin MazF	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
AVS00589.1\|1246817_1247000_-	hypothetical protein	R9QT81	Staphylococcus_phage	5.3e-27	100.0
AVS00590.1\|1247155_1247854_-	hypothetical protein	A0A1B0Y2S3	Lactobacillus_phage	4.4e-13	29.8
AVS00591.1\|1248035_1248668_-	XRE family transcriptional regulator	Q4ZB06	Staphylococcus_virus	1.9e-103	90.4
AVS00592.1\|1248821_1249049_+	XRE family transcriptional regulator	Q4ZB05	Staphylococcus_virus	3.5e-36	98.7
AVS00593.1\|1249071_1249860_+	phage antirepressor	R9QSV3	Staphylococcus_phage	2.7e-144	99.6
AVS00594.1\|1249872_1250316_+	hypothetical protein	Q6R853	Staphylococcus_virus	2.0e-75	100.0
AVS00595.1\|1250330_1250471_+	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
AVS00596.1\|1250463_1250673_-	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
AVS00597.1\|1250729_1251479_+	oxidoreductase	Q8SDM9	Staphylococcus_phage	4.4e-136	99.6
AVS00598.1\|1251491_1251752_+	transcriptional regulator	A0A2I6PDT7	Staphylococcus_phage	3.5e-40	100.0
AVS02181.1\|1251984_1252305_+	DUF771 domain-containing protein	A0A1W6JPI1	Staphylococcus_phage	7.4e-56	100.0
AVS00599.1\|1252301_1252463_+	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	2.5e-20	100.0
AVS00600.1\|1252555_1252816_+	hypothetical protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
AVS00601.1\|1252824_1253088_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AVS02182.1\|1253096_1255040_+	ATPase	R9QT82	Staphylococcus_phage	0.0e+00	99.2
AVS00602.1\|1255041_1255962_+	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AVS00603.1\|1256042_1256660_+	MBL fold metallo-hydrolase	A0A1W6JPL3	Staphylococcus_phage	1.2e-86	100.0
AVS00604.1\|1256660_1257131_+	single-stranded DNA-binding protein	A0A0E3T9H6	Staphylococcus_phage	4.8e-80	99.4
AVS00605.1\|1257160_1258045_+	DNA replication protein DnaD	S4V6D4	Staphylococcus_phage	1.6e-137	96.3
AVS00606.1\|1258051_1258270_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AVS00607.1\|1258278_1258683_+	RusA family crossover junction endodeoxyribonuclease	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
AVS00608.1\|1258695_1259064_+	hypothetical protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
AVS00609.1\|1259067_1259310_+	hypothetical protein	A0A1P8L6E3	Staphylococcus_phage	3.0e-41	100.0
AVS00610.1\|1259324_1259579_+	hypothetical protein	B5WZN0	Staphylococcus_phage	6.5e-39	97.6
AVS00611.1\|1259541_1259736_+	hypothetical protein	M1SVE4	Staphylococcus_phage	4.1e-25	98.4
AVS00612.1\|1259728_1260265_+	dUTPase	A0A2I6PEN6	Staphylococcus_phage	4.6e-95	99.4
AVS00613.1\|1260301_1260508_+	DUF1381 domain-containing protein	A0A2I6PEM9	Staphylococcus_phage	1.6e-19	100.0
AVS00614.1\|1260504_1260708_+	hypothetical protein	A0A2I6PEQ8	Staphylococcus_phage	3.4e-30	100.0
AVS00615.1\|1260700_1260937_+	hypothetical protein	A0A2I6PEM4	Staphylococcus_phage	1.1e-35	98.7
AVS00616.1\|1260920_1261316_+	hypothetical protein	A7TWI1	Staphylococcus_phage	3.3e-66	100.0
AVS00617.1\|1261312_1261462_+	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AVS00618.1\|1261620_1262271_+	hypothetical protein	D2JLD8	Staphylococcus_phage	8.9e-117	100.0
AVS00619.1\|1262270_1262471_+	DUF1514 domain-containing protein	D2JLD9	Staphylococcus_phage	1.4e-28	100.0
AVS00620.1\|1262498_1262915_+	transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AVS00621.1\|1263146_1263446_+	HNH endonuclease	G4KNP8	Staphylococcus_phage	4.6e-52	100.0
AVS00622.1\|1263576_1263921_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AVS00623.1\|1263917_1265579_+\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
AVS00624.1\|1265594_1266782_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AVS00625.1\|1266765_1267503_+\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AVS00626.1\|1267526_1268672_+\|capsid	phage major capsid protein	C8CH21	Staphylococcus_phage	2.8e-214	99.7
AVS00627.1\|1268691_1268976_+	hypothetical protein	A0A1W6JPL8	Staphylococcus_phage	2.3e-45	100.0
AVS00628.1\|1268965_1269250_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AVS00629.1\|1269233_1269596_+\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
1269334:1269351	attR	NA	NA	NA	NA
AVS00630.1\|1269592_1269997_+	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
AVS00631.1\|1269993_1270401_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AVS00632.1\|1270401_1271046_+\|tail	phage tail protein	Q6R871	Staphylococcus_virus	6.5e-120	100.0
AVS00633.1\|1271087_1271312_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
AVS00634.1\|1271361_1271712_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	3.0e-58	99.1
AVS00635.1\|1271956_1276489_+\|tail	phage tail tape measure protein	W5R8I2	Staphylococcus_phage	0.0e+00	92.8
AVS00636.1\|1276485_1277970_+\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AVS00637.1\|1277985_1281771_+	hypothetical protein	C8CH32	Staphylococcus_phage	0.0e+00	99.7
AVS00638.1\|1281760_1281913_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AVS00639.1\|1281959_1282247_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AVS00640.1\|1282304_1282601_+	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
AVS00641.1\|1282750_1282927_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AVS00642.1\|1282979_1283087_-	hypothetical protein	NA	NA	NA	NA
AVS00643.1\|1283138_1283393_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AVS00644.1\|1283404_1284160_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AVS00645.1\|1284350_1284842_+	kinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
AVS00646.1\|1285452_1285803_+	inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AVS00647.1\|1285855_1286116_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
AVS00648.1\|1286094_1286403_-	hypothetical protein	M9NTD8	Staphylococcus_phage	2.1e-39	100.0
AVS00649.1\|1286426_1286606_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AVS00650.1\|1286977_1287178_-	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	3.8e-26	95.4
AVS00651.1\|1287563_1289633_+	MAP domain-containing protein	NA	NA	NA	NA
AVS00652.1\|1289903_1291190_-	aspartate aminotransferase	NA	NA	NA	NA
AVS00653.1\|1291389_1291488_+	hypothetical protein	NA	NA	NA	NA
AVS00654.1\|1291729_1291906_+	hypothetical protein	NA	NA	NA	NA
AVS00655.1\|1292163_1292544_+	GntR family transcriptional regulator	NA	NA	NA	NA
AVS00656.1\|1292540_1293437_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	6.5e-17	30.7
AVS00657.1\|1293437_1294118_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
AVS00658.1\|1294114_1294987_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
AVS00659.1\|1294986_1295727_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
AVS00660.1\|1295790_1296354_-	thioredoxin family protein	NA	NA	NA	NA
AVS00661.1\|1296474_1296999_+	hypothetical protein	NA	NA	NA	NA
AVS00662.1\|1297058_1297616_+	DUF1700 domain-containing protein	NA	NA	NA	NA
AVS00663.1\|1297612_1298455_+	hypothetical protein	NA	NA	NA	NA
AVS00664.1\|1298511_1299552_-	linear amide C-N hydrolase	NA	NA	NA	NA
AVS00665.1\|1300002_1300176_+	hypothetical protein	NA	NA	NA	NA
AVS00666.1\|1300232_1300634_-	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
AVS00667.1\|1300904_1301933_+	hypothetical protein	NA	NA	NA	NA
AVS00668.1\|1302052_1303432_-	aldehyde dehydrogenase	NA	NA	NA	NA
AVS00669.1\|1303483_1303657_+	hypothetical protein	NA	NA	NA	NA
AVS00670.1\|1303849_1304779_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AVS00671.1\|1304831_1305392_-	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
AVS00672.1\|1305763_1306861_+	pectate lyase	U5PWM6	Bacillus_phage	3.3e-47	34.6
AVS00673.1\|1307065_1308628_+	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA
AVS00674.1\|1308638_1308746_-	hypothetical protein	NA	NA	NA	NA
AVS00675.1\|1308817_1309612_-	prephenate dehydratase	NA	NA	NA	NA
AVS00676.1\|1309631_1310708_-	nitric oxide synthase oxygenase	NA	NA	NA	NA
AVS00677.1\|1310891_1312361_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	1.7e-107	44.9
AVS00678.1\|1312353_1313175_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	6.1e-70	53.1
AVS00679.1\|1313444_1314047_+	DUF2179 domain-containing protein	NA	NA	NA	NA
AVS00680.1\|1314027_1314201_+	NETI motif-containing protein	NA	NA	NA	NA
AVS00681.1\|1314493_1314817_-	staphostatin A	NA	NA	NA	NA
AVS00682.1\|1314847_1316014_-\|protease	cysteine protease staphopain A	NA	NA	NA	NA

DBSCAN-SWA_3

1419753 : 1467599

Staphylococcus_phage(91.89%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS00772.1\|1419753_1420035_+\|transposase	IS3 family transposase	A0A0C5AJ30	Paenibacillus_phage	3.2e-23	63.4
AVS00773.1\|1420483_1420867_+	hypothetical protein	NA	NA	NA	NA
AVS00774.1\|1420877_1421054_+	hypothetical protein	NA	NA	NA	NA
AVS00775.1\|1421424_1421982_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	1.1e-78	98.1
AVS00776.1\|1422179_1422752_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.5e-24	93.1
AVS00777.1\|1422849_1423194_-	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	5.1e-55	96.5
AVS00778.1\|1423234_1423861_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	9.9e-81	84.1
AVS00779.1\|1423936_1424932_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	1.3e-69	94.8
AVS00780.1\|1425012_1425675_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.8e-49	87.7
AVS02188.1\|1425977_1426433_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	8.3e-77	96.6
AVS00781.1\|1426591_1428070_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.7e-277	95.5
AVS00782.1\|1428074_1429076_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	3.3e-163	86.5
AVS00783.1\|1429072_1429330_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AVS00784.1\|1429395_1429869_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.2e-84	98.7
AVS02189.1\|1429873_1430620_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.8e-141	98.0
AVS00785.1\|1430916_1432509_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.6
AVS00786.1\|1432880_1434074_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AVS00787.1\|1434198_1435107_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-137	99.3
AVS00788.1\|1435318_1436152_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.7e-157	98.9
AVS00789.1\|1436401_1436755_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.3e-18	82.1
AVS00790.1\|1436751_1437117_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.9e-58	98.3
AVS00791.1\|1437371_1437674_-	hypothetical protein	NA	NA	NA	NA
AVS00792.1\|1437932_1438646_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AVS00793.1\|1439208_1439829_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVS00794.1\|1439995_1440631_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVS00795.1\|1440928_1441372_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.4e-49	77.9
AVS00796.1\|1441358_1441802_-	competence protein ComK	NA	NA	NA	NA
AVS00797.1\|1441914_1442385_-	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	5.0e-69	84.6
AVS00798.1\|1442583_1442808_+	hypothetical protein	NA	NA	NA	NA
AVS00799.1\|1443083_1443938_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AVS00800.1\|1444024_1445317_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	7.5e-216	94.7
AVS00801.1\|1445316_1445631_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.3e-52	98.1
AVS00802.1\|1446273_1447776_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	5.0e-30	98.6
AVS02190.1\|1448268_1449300_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.5e-195	98.8
AVS00803.1\|1449306_1449939_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AVS00804.1\|1449949_1451131_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.9e-226	99.7
AVS00805.1\|1451143_1451602_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.1e-68	97.4
AVS00806.1\|1451729_1452731_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
AVS02191.1\|1452639_1452831_+	hypothetical protein	NA	NA	NA	NA
AVS00807.1\|1452842_1452962_+	hypothetical protein	NA	NA	NA	NA
AVS00808.1\|1452964_1453792_+	alpha/beta hydrolase	NA	NA	NA	NA
AVS00809.1\|1454364_1454766_+	MarR family transcriptional regulator	NA	NA	NA	NA
AVS00810.1\|1454884_1455448_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	7.3e-99	95.7
AVS00811.1\|1455444_1456398_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-79	99.3
AVS00812.1\|1456507_1457689_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
AVS00813.1\|1457976_1460394_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.1
AVS00814.1\|1460415_1460727_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.3e-49	95.1
AVS00815.1\|1461050_1467599_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	5.7e-296	95.1

DBSCAN-SWA_4

1603845 : 1612888

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS00934.1\|1603845_1604850_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AVS00935.1\|1604851_1605877_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AVS00936.1\|1605899_1607039_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AVS00937.1\|1607057_1607318_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AVS00938.1\|1607592_1609872_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AVS00939.1\|1610074_1612348_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.1e-64	29.3
AVS00940.1\|1612369_1612888_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_5

1682254 : 1690566

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS01009.1\|1682254_1684054_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-54	36.0
AVS01010.1\|1684277_1685384_+	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AVS01011.1\|1685514_1686192_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AVS01012.1\|1686194_1687295_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	1.0e-08	30.6
AVS01013.1\|1687408_1688755_+	ATP-dependent helicase	A0A1V0SIR5	Klosneuvirus	3.4e-54	33.7
AVS01014.1\|1688764_1689655_+	endonuclease	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AVS01015.1\|1689780_1690566_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_6

1962742 : 1969502

Staphylococcus_phage(83.33%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS01253.1\|1962742_1963582_-\|head	head morphogenesis protein	A0A1J0MFV1	Staphylococcus_phage	1.1e-29	50.7
AVS01254.1\|1963651_1963903_-	hypothetical protein	NA	NA	NA	NA
AVS02208.1\|1964551_1965136_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.4e-30	42.6
AVS01255.1\|1965567_1965984_-	hypothetical protein	NA	NA	NA	NA
AVS01256.1\|1966494_1966680_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
AVS01257.1\|1967072_1967183_-	hypothetical protein	NA	NA	NA	NA
AVS01258.1\|1967883_1968090_-	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	5.5e-12	55.2
AVS02209.1\|1968390_1968618_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.9e-18	72.1
AVS01259.1\|1969304_1969502_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	9.9e-11	50.0

DBSCAN-SWA_7

2235461 : 2243934

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS01509.1\|2235461_2236028_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.7e-29	40.1
AVS01510.1\|2236030_2237059_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.9e-61	41.1
AVS01511.1\|2237051_2238536_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.5e-46	31.7
AVS01512.1\|2238514_2240704_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-140	39.4
AVS01513.1\|2240696_2241368_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AVS01514.1\|2241369_2241633_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AVS01515.1\|2241632_2242337_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	2.1e-47	42.1
AVS01516.1\|2242340_2243465_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AVS01517.1\|2243451_2243934_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_8

2262607 : 2279893

Staphylococcus_phage(50.0%)

bacteriocin,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS01534.1\|2262607_2263636_+\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	1.1e-15	31.7
AVS01535.1\|2263717_2264899_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
AVS01536.1\|2264936_2265266_+	staphostatin B	NA	NA	NA	NA
AVS01537.1\|2265503_2266325_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
AVS01538.1\|2266317_2267121_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
AVS01539.1\|2267107_2268781_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
AVS02221.1\|2268767_2269979_-	isochorismate synthase	NA	NA	NA	NA
AVS02222.1\|2270082_2270160_-	hypothetical protein	NA	NA	NA	NA
AVS01540.1\|2270310_2271249_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AVS01541.1\|2271299_2271851_-	N-acetyltransferase	NA	NA	NA	NA
AVS01542.1\|2271940_2272231_+	NINE protein	NA	NA	NA	NA
AVS01543.1\|2272294_2272426_+	hypothetical protein	NA	NA	NA	NA
AVS01544.1\|2272474_2273434_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVS01545.1\|2273924_2274281_+	DoxX family protein	NA	NA	NA	NA
AVS01546.1\|2274369_2274507_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
AVS01547.1\|2274647_2274938_+	hypothetical protein	NA	NA	NA	NA
AVS01548.1\|2275025_2275667_-\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-19	33.7
AVS01549.1\|2275663_2275984_-	hypothetical protein	NA	NA	NA	NA
AVS01550.1\|2275986_2277951_-	DUF1430 domain-containing protein	NA	NA	NA	NA
AVS01551.1\|2277994_2278279_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AVS02223.1\|2278913_2278991_-\|holin	putative holin-like toxin	NA	NA	NA	NA
AVS01552.1\|2279290_2279893_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_9

2342654 : 2365879

Streptococcus_phage(94.74%)

integrase

attL 2338363:2338380|attR 2377406:2377423

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2338363:2338380	attL	NA	NA	NA	NA
AVS01607.1\|2342654_2342969_+	DUF961 domain-containing protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
AVS01608.1\|2342984_2343371_+	DUF961 domain-containing protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
AVS01609.1\|2343399_2344785_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
AVS01610.1\|2344787_2344940_+	conjugal transfer protein	NA	NA	NA	NA
AVS01611.1\|2344962_2346168_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
AVS01612.1\|2346210_2346432_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
AVS01613.1\|2346548_2347046_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
AVS01614.1\|2347020_2347527_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
AVS01615.1\|2347510_2349958_+	ATP/GTP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	99.9
AVS01616.1\|2349960_2352138_+	hypothetical protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
AVS01617.1\|2352134_2353136_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
AVS01618.1\|2353132_2354065_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-171	99.4
AVS01619.1\|2354339_2354426_+	tetracycline resistance protein	NA	NA	NA	NA
AVS01620.1\|2354441_2356361_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.5
AVS01621.1\|2356461_2356647_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	3.9e-17	67.9
AVS01622.1\|2356706_2357060_-	XRE family transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
AVS02225.1\|2357264_2357336_+	hypothetical protein	NA	NA	NA	NA
AVS01623.1\|2357564_2357987_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
AVS01624.1\|2357983_2358214_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
AVS01625.1\|2358439_2358691_-	hypothetical protein	NA	NA	NA	NA
AVS01626.1\|2358674_2358878_+	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
AVS01627.1\|2358959_2360177_+\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	1.1e-232	99.8
AVS01628.1\|2360441_2360831_-	hypothetical protein	NA	NA	NA	NA
AVS01629.1\|2361157_2362060_-	FAA hydrolase family protein	NA	NA	NA	NA
AVS01630.1\|2362225_2365879_-	helicase-exonuclease AddAB subunit AddA	A7KV33	Bacillus_phage	7.0e-25	24.7
2377406:2377423	attR	NA	NA	NA	NA

DBSCAN-SWA_10

2415075 : 2461213

Staphylococcus_phage(70.59%)

head,capsid,integrase,portal,terminase,tail,holin

attL 2408350:2408365|attR 2466347:2466362

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2408350:2408365	attL	NA	NA	NA	NA
AVS01679.1\|2415075_2415459_-	hypothetical protein	A0A0H4J3A8	Staphylococcus_phage	4.7e-65	100.0
AVS01680.1\|2415445_2415757_-	DUF3467 domain-containing protein	Q4ZB87	Staphylococcus_virus	1.8e-51	100.0
AVS01681.1\|2416102_2416303_-	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
AVS01682.1\|2416289_2416400_-	hypothetical protein	W5R8J7	Staphylococcus_phage	1.7e-12	100.0
AVS01683.1\|2416470_2416623_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
AVS01684.1\|2416865_2418311_-	CHAP domain-containing protein	Q08JW9	Staphylococcus_phage	1.7e-293	98.8
AVS01685.1\|2418291_2418729_-\|holin	phage holin	A0A2H4PQP0	Staphylococcus_phage	4.1e-73	100.0
AVS01686.1\|2418785_2419181_-	hypothetical protein	A9CRD5	Staphylococcus_phage	2.3e-67	98.5
AVS01687.1\|2419185_2420424_-	DUF2479 domain-containing protein	A0A0F6N3G7	Staphylococcus_phage	3.8e-209	99.3
AVS01688.1\|2420436_2422311_-	CHAP domain-containing protein	Q9FZY4	Staphylococcus_virus	0.0e+00	98.4
AVS01689.1\|2422447_2422747_-	hypothetical protein	A0A0F6N3M6	Staphylococcus_phage	9.9e-47	100.0
AVS02227.1\|2422787_2422961_-	XkdX family protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
AVS01690.1\|2422963_2423341_-	DUF2977 domain-containing protein	E0Y3M4	Staphylococcus_virus	2.6e-60	100.0
AVS01691.1\|2423340_2425164_-	DUF2479 domain-containing protein	Q4ZBH7	Staphylococcus_virus	0.0e+00	100.0
AVS01692.1\|2425163_2427062_-	hypothetical protein	Q4ZBH8	Staphylococcus_virus	0.0e+00	99.8
AVS01693.1\|2427074_2428961_-	peptidase	A7YGW3	Staphylococcus_virus	0.0e+00	100.0
AVS01694.1\|2428971_2429907_-\|tail	phage tail protein	Q4ZBI0	Staphylococcus_virus	8.2e-180	100.0
AVS01695.1\|2429921_2432891_-\|terminase	terminase	Q4ZBI1	Staphylococcus_virus	1.0e-263	99.8
AVS01696.1\|2432893_2433235_-	hypothetical protein	A0A2H4PQL5	Staphylococcus_phage	9.3e-41	76.1
AVS01697.1\|2433255_2433750_-	hypothetical protein	A0A0H4IPX9	Staphylococcus_phage	2.5e-87	100.0
AVS01698.1\|2433811_2434372_-\|tail	phage tail protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
AVS01699.1\|2434358_2434796_-	DUF3168 domain-containing protein	Q4ZBI5	Staphylococcus_virus	2.1e-77	100.0
AVS01700.1\|2434808_2435222_-	hypothetical protein	A0A0E3XCY8	Staphylococcus_phage	1.5e-77	100.0
AVS01701.1\|2435208_2435544_-\|head,tail	phage head-tail adapter protein	A0A0H4ISR6	Staphylococcus_phage	8.8e-60	98.2
AVS01702.1\|2435536_2435851_-\|head,tail	phage head-tail adapter protein	A0A0E3T8M5	Staphylococcus_phage	8.8e-54	100.0
AVS01703.1\|2435850_2436177_-	Rho termination protein	A0A0E3TAL3	Staphylococcus_phage	4.3e-51	100.0
AVS01704.1\|2436193_2437018_-\|capsid	N4-gp56 family major capsid protein	A0A0E3T9M6	Staphylococcus_phage	5.6e-148	100.0
AVS01705.1\|2437038_2437635_-	hypothetical protein	C7F7L8	Staphylococcus_phage	3.1e-76	98.0
AVS01706.1\|2437732_2438713_-\|head	phage head morphogenesis protein	A0A0E3XC69	Staphylococcus_phage	3.5e-181	99.7
AVS01707.1\|2438651_2440130_-\|portal	phage portal protein	A0A0E3T8M2	Staphylococcus_phage	5.1e-285	99.6
AVS01708.1\|2440083_2441292_-\|terminase	PBSX family phage terminase large subunit	A0A0H4ITX6	Staphylococcus_phage	4.0e-235	99.5
AVS01709.1\|2441284_2441779_-\|terminase	terminase	A0A0H4J343	Staphylococcus_phage	3.2e-82	99.4
AVS01710.1\|2442130_2442532_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
AVS01711.1\|2442532_2442706_-	transcriptional regulator	Q4ZA36	Staphylococcus_virus	5.4e-21	94.7
AVS01712.1\|2442702_2443098_-	hypothetical protein	A7TWI1	Staphylococcus_phage	3.3e-66	100.0
AVS01713.1\|2443081_2443318_-	hypothetical protein	Q4ZDP0	Staphylococcus_virus	2.8e-36	100.0
AVS01714.1\|2443310_2443514_-	hypothetical protein	B2ZYX5	Staphylococcus_phage	8.8e-31	98.5
AVS01715.1\|2443510_2443717_-	DUF1381 domain-containing protein	S4V684	Staphylococcus_phage	1.1e-28	97.1
AVS01716.1\|2443713_2443959_-	hypothetical protein	A0A0H4ITX2	Staphylococcus_phage	2.0e-37	100.0
AVS01717.1\|2443995_2444532_-	dUTPase	A0A0K1LKF0	Staphylococcus_phage	5.7e-93	97.8
AVS01718.1\|2444524_2444773_-	DUF1024 domain-containing protein	Q4ZCN8	Staphylococcus_virus	2.4e-38	100.0
AVS01719.1\|2444765_2445041_-	hypothetical protein	Q4ZBD3	Staphylococcus_virus	3.0e-42	94.5
AVS01720.1\|2445040_2445442_-	hypothetical protein	A0A0H4IPW3	Staphylococcus_phage	4.3e-53	79.1
AVS01721.1\|2445456_2445705_-	hypothetical protein	S4V683	Staphylococcus_phage	3.6e-42	97.6
AVS01722.1\|2445705_2446323_-	hypothetical protein	A0A0H3U4U9	Staphylococcus_phage	7.5e-81	96.1
AVS01723.1\|2446323_2446509_-	DUF3113 domain-containing protein	A0A0H3U473	Staphylococcus_phage	3.5e-26	96.7
AVS01724.1\|2446508_2446916_-	RusA family crossover junction endodeoxyribonuclease	A9CR74	Staphylococcus_phage	2.5e-72	98.5
AVS01725.1\|2446925_2447147_-	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	1.9e-34	98.6
AVS01726.1\|2447160_2447319_-	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	1.3e-21	96.2
AVS01727.1\|2447312_2448086_-	DNA replication protein DnaC	A0A2I6PDA0	Staphylococcus_phage	1.5e-142	98.8
AVS01728.1\|2448095_2448911_-	replication protein	Q4ZAS2	Staphylococcus_virus	1.3e-117	99.3
AVS01729.1\|2448882_2449662_-	AP2 domain-containing protein	A0A2H4J5K3	uncultured_Caudovirales_phage	7.3e-49	46.1
AVS01730.1\|2449661_2450327_-	hypothetical protein	Q8SDW3	Staphylococcus_phage	1.4e-125	99.5
AVS02228.1\|2450339_2450840_-	single-strand DNA-binding protein	A7TWM8	Staphylococcus_phage	7.2e-90	100.0
AVS01731.1\|2450924_2451698_-	hypothetical protein	A0EWP9	Staphylococcus_virus	1.6e-141	100.0
AVS01732.1\|2451697_2452177_-	siphovirus superfamily	A0A0H4J328	Staphylococcus_phage	1.1e-82	100.0
AVS01733.1\|2452191_2452452_-	DUF1108 domain-containing protein	A1KX65	Staphylococcus_virus	8.9e-44	100.0
AVS01734.1\|2452544_2452706_-	DUF1270 domain-containing protein	C7F7L3	Staphylococcus_phage	1.9e-20	100.0
AVS01735.1\|2452698_2452920_-	hypothetical protein	A0A0H4ISQ0	Staphylococcus_phage	1.5e-31	100.0
AVS01736.1\|2453117_2453321_-	hypothetical protein	A0A0E3XBM9	Staphylococcus_phage	4.7e-32	100.0
AVS01737.1\|2453336_2454089_-	oxidoreductase	Q4ZBN2	Staphylococcus_phage	1.3e-138	100.0
AVS01738.1\|2454153_2454390_+	hypothetical protein	Q4ZBN3	Staphylococcus_phage	8.7e-38	97.4
AVS01739.1\|2454603_2454831_-	BetR domain protein	B5WZL3	Staphylococcus_phage	2.6e-31	93.3
AVS01740.1\|2455001_2455613_+	helix-turn-helix domain-containing protein	B5WZL2	Staphylococcus_phage	3.8e-101	90.1
AVS01741.1\|2455648_2456581_+	hypothetical protein	A0EX19	Staphylococcus_virus	6.7e-174	100.0
AVS01742.1\|2456560_2456740_-	excisionase	Q4ZBP0	Staphylococcus_phage	3.7e-25	100.0
AVS01743.1\|2456852_2457902_+\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	1.1e-201	99.4
AVS01744.1\|2457969_2459367_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AVS01745.1\|2459517_2459982_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
AVS01746.1\|2459971_2461213_-	cysteine desulfurase	Q2XUY6	environmental_halophage	6.3e-111	44.8
2466347:2466362	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2548696 : 2563012

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS01835.1\|2548696_2549458_-	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.2e-17	30.1
AVS01836.1\|2549454_2550411_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.6e-05	57.8
AVS01837.1\|2550397_2551369_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2
AVS01838.1\|2551514_2551697_-	hypothetical protein	NA	NA	NA	NA
AVS01839.1\|2551738_2552710_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AVS01840.1\|2552829_2554935_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AVS01841.1\|2554897_2555296_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AVS01842.1\|2555563_2555713_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AVS01843.1\|2556097_2556964_+	EamA/RhaT family transporter	NA	NA	NA	NA
AVS01844.1\|2556983_2557484_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.7e-52	66.2
AVS01845.1\|2557555_2557762_+	hypothetical protein	NA	NA	NA	NA
AVS01846.1\|2557823_2559329_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AVS01847.1\|2559400_2559508_-	hypothetical protein	NA	NA	NA	NA
AVS01848.1\|2559598_2560516_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.8e-07	22.0
AVS02231.1\|2560784_2560952_-	nitrogen fixation protein NifR	NA	NA	NA	NA
AVS01849.1\|2561252_2561795_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AVS01850.1\|2561953_2563012_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.5e-20	26.9

DBSCAN-SWA_12

2574982 : 2582802

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS01860.1\|2574982_2576134_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1
AVS01861.1\|2576117_2576711_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.1e-39	44.0
AVS01862.1\|2577061_2577730_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AVS01863.1\|2577731_2578151_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AVS01864.1\|2578154_2578868_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AVS01865.1\|2578966_2579551_+	hypothetical protein	NA	NA	NA	NA
AVS01866.1\|2579831_2580272_+	hypothetical protein	NA	NA	NA	NA
AVS01867.1\|2580612_2581086_+	DoxX family membrane protein	NA	NA	NA	NA
AVS01868.1\|2581060_2581747_+	DNA-binding response regulator	NA	NA	NA	NA
AVS01869.1\|2581746_2582802_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage