CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028191	Staphylococcus aureus strain CFSAN018749 plasmid pGMI14-005, complete sequence	0 crisprs	NA	0	0	0	0
CP028190	Staphylococcus aureus strain CFSAN018749 chromosome, complete genome	0 crisprs	csa3,WYL,DEDDh,cas3,DinG	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4621 : 47682

Staphylococcus_prophage(50.0%)

head,holin,protease,transposase,tail,capsid,terminase,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS42483.1\|4621_5794_-	hypothetical protein	Q9MBN0	Staphylococcus_prophage	2.0e-215	100.0
AVS42484.1\|5807_6227_-	hypothetical protein	Q9MBN1	Staphylococcus_prophage	8.7e-81	100.0
AVS42485.1\|6756_7725_-	bi-component leukocidin LukMF' subunit F'	Q9MBN2	Staphylococcus_prophage	2.0e-181	100.0
AVS42486.1\|7726_8653_-	bi-component leukocidin LukMF' subunit M	Q9MBN3	Staphylococcus_prophage	1.4e-176	100.0
AVS42487.1\|9000_9756_-	CHAP domain-containing protein	Q9MBN4	Staphylococcus_prophage	3.4e-152	100.0
AVS42488.1\|9767_10022_-\|holin	phage holin	Q9MBN5	Staphylococcus_prophage	5.3e-41	100.0
AVS42489.1\|10560_10857_-	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
AVS42490.1\|10914_11202_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AVS42491.1\|11248_11401_-	hypothetical protein	D2JLG0	Staphylococcus_phage	2.0e-19	98.0
AVS42492.1\|11390_15176_-	hypothetical protein	Q9MBN9	Staphylococcus_prophage	0.0e+00	100.0
AVS42493.1\|15191_16682_-\|tail	phage tail protein	Q9MBP0	Staphylococcus_prophage	1.4e-298	100.0
AVS42494.1\|16681_21331_-\|tail	phage tail tape measure protein	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	97.7
AVS42495.1\|21387_21510_-	hypothetical protein	D2JLF6	Staphylococcus_phage	2.6e-14	97.5
AVS42496.1\|21569_22016_-	hypothetical protein	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
AVS42497.1\|22080_23034_-\|tail	phage tail protein	A7TWD0	Staphylococcus_phage	1.8e-174	99.7
AVS42498.1\|23034_23415_-	hypothetical protein	Q9MBP5	Staphylococcus_prophage	3.4e-68	100.0
AVS42499.1\|23411_23789_-	hypothetical protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
AVS42500.1\|23788_24088_-\|head,tail	head-tail adaptor protein	D2JLF1	Staphylococcus_phage	1.2e-52	99.0
AVS42501.1\|24114_25761_-\|transposase	IS1182-like element ISSau3 family transposase	Q9MBP7	Staphylococcus_prophage	1.0e-294	99.8
AVS42502.1\|26025_26367_-\|head,tail	phage head-tail adapter protein	Q9MBP8	Staphylococcus_prophage	6.9e-60	100.0
AVS42503.1\|26375_26534_-	hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
AVS42504.1\|26569_27817_-\|capsid	phage major capsid protein	D2JLE8	Staphylococcus_phage	1.7e-201	100.0
AVS42505.1\|27904_28489_-\|head,protease	HK97 family phage prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
AVS45166.1\|28481_29672_-\|portal	phage portal protein	D2JLE6	Staphylococcus_phage	1.8e-224	100.0
AVS42506.1\|29737_29977_-	hypothetical protein	O80042	Staphylococcus_phage	7.0e-35	100.0
AVS42507.1\|29951_31646_-\|terminase	terminase	D2JLE4	Staphylococcus_phage	0.0e+00	99.8
AVS42508.1\|31648_32116_-\|terminase	phage terminase small subunit P27 family	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
AVS45167.1\|32246_32591_-	HNH endonuclease	D2JLE2	Staphylococcus_phage	4.2e-65	100.0
AVS42509.1\|32606_33059_-	hypothetical protein	D2JLE1	Staphylococcus_phage	1.4e-79	100.0
AVS42510.1\|33173_33635_-	hypothetical protein	D2JLE0	Staphylococcus_phage	3.6e-72	100.0
AVS42511.1\|33541_33754_+	hypothetical protein	NA	NA	NA	NA
AVS42512.1\|33657_33858_-	DUF1514 domain-containing protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
AVS42513.1\|33857_34007_-	transcriptional regulator	Q9MBQ7	Staphylococcus_prophage	3.7e-18	100.0
AVS42514.1\|34006_34399_-	hypothetical protein	A0A2I6PDC1	Staphylococcus_phage	2.8e-65	100.0
AVS42515.1\|34382_34619_-	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
AVS42516.1\|34643_34880_-	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	1.1e-35	100.0
AVS42517.1\|34916_35453_-	dUTPase	Q9MBR0	Staphylococcus_prophage	1.6e-95	100.0
AVS42518.1\|35445_35694_-	DUF1024 domain-containing protein	Q9MBR1	Staphylococcus_prophage	3.1e-38	100.0
AVS42519.1\|35686_35971_-	hypothetical protein	Q9MBR2	Staphylococcus_prophage	1.4e-45	98.9
AVS42520.1\|35985_36234_-	hypothetical protein	S4V683	Staphylococcus_phage	3.2e-43	100.0
AVS42521.1\|36234_36606_-	hypothetical protein	Q9MBR4	Staphylococcus_prophage	2.7e-54	100.0
AVS42522.1\|36617_36875_-	XRE family transcriptional regulator	Q9MBR5	Staphylococcus_prophage	5.4e-41	100.0
AVS42523.1\|36875_37061_-	DUF3113 domain-containing protein	Q9MBR6	Staphylococcus_prophage	9.2e-27	100.0
AVS42524.1\|37065_37470_-	DUF1064 domain-containing protein	Q9MBR7	Staphylococcus_prophage	5.4e-72	100.0
AVS42525.1\|37870_38644_-	DNA replication protein DnaC	C5I645	Staphylococcus_phage	1.5e-142	99.2
AVS42526.1\|38653_39457_-	replication protein	Q9MBR9	Staphylococcus_prophage	1.5e-121	100.0
AVS42527.1\|39428_40124_-	hypothetical protein	Q9MBS0	Staphylococcus_prophage	2.3e-134	100.0
AVS42528.1\|40137_40566_-	single-stranded DNA-binding protein	A0A2H4JHI1	uncultured_Caudovirales_phage	2.5e-59	98.6
AVS42529.1\|40565_41204_-	single-stranded DNA-binding protein	Q9MBS2	Staphylococcus_prophage	1.7e-115	100.0
AVS42530.1\|41203_41683_-	siphovirus superfamily	Q9MBS3	Staphylococcus_prophage	8.1e-83	100.0
AVS42531.1\|41697_41958_-	DUF1108 domain-containing protein	Q9MBS4	Staphylococcus_prophage	1.5e-43	100.0
AVS42532.1\|42051_42372_-	hypothetical protein	Q9MBS5	Staphylococcus_prophage	1.6e-55	100.0
AVS42533.1\|42372_42540_-	DUF1270 domain-containing protein	Q9MBS6	Staphylococcus_prophage	6.2e-22	100.0
AVS42534.1\|42532_42754_-	hypothetical protein	Q9MBS7	Staphylococcus_prophage	1.5e-31	100.0
AVS42535.1\|42825_43056_+	hypothetical protein	Q9MBS8	Staphylococcus_prophage	3.0e-35	100.0
AVS42536.1\|43222_44020_-	phage antirepressor Ant	Q9MBT0	Staphylococcus_prophage	1.7e-146	100.0
AVS42537.1\|44076_44286_+	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
AVS42538.1\|44278_44419_-	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
AVS42539.1\|44433_44877_-	hypothetical protein	W5R971	Staphylococcus_phage	1.5e-75	100.0
AVS42540.1\|44889_45129_-	XRE family transcriptional regulator	Q9MBT3	Staphylococcus_prophage	8.0e-39	100.0
AVS42541.1\|45300_46011_+	XRE family transcriptional regulator	Q9MBT4	Staphylococcus_prophage	2.6e-130	100.0
AVS42542.1\|46165_46351_+	hypothetical protein	A0A1X9H0K5	Staphylococcus_phage	1.1e-24	100.0
AVS45168.1\|46440_46836_+	hypothetical protein	I1W601	Staphylococcus_phage	1.4e-69	100.0
AVS42543.1\|46924_47071_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
AVS42544.1\|47067_47682_-	ATPase	Q9MBT7	Staphylococcus_prophage	1.0e-106	100.0

DBSCAN-SWA_2

1210259 : 1273356

Staphylococcus_phage(81.82%)

protease,head,holin,integrase,transposase,tail,capsid,terminase,portal

attL 1203339:1203356|attR 1257202:1257219

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1203339:1203356	attL	NA	NA	NA	NA
AVS43584.1\|1210259_1211906_+\|transposase	IS1182 family transposase ISSau3	A0ZS58	Staphylococcus_virus	3.5e-295	100.0
AVS43585.1\|1211910_1212132_-	hypothetical protein	NA	NA	NA	NA
AVS43586.1\|1212130_1213180_+	ABC transporter permease	NA	NA	NA	NA
AVS43587.1\|1213192_1213870_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-31	39.4
AVS43588.1\|1214028_1214169_-	hypothetical protein	NA	NA	NA	NA
AVS43589.1\|1214158_1215109_+	transcriptional regulator	NA	NA	NA	NA
AVS43590.1\|1215451_1216570_+	carbohydrate kinase	NA	NA	NA	NA
AVS43591.1\|1216544_1217468_+	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA
AVS43592.1\|1217478_1218699_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
AVS43593.1\|1218803_1220336_-	Na+/proline symporter	NA	NA	NA	NA
AVS43594.1\|1220375_1221257_-	N-acetylneuraminate lyase	NA	NA	NA	NA
AVS43595.1\|1221414_1222275_+	ROK family protein	NA	NA	NA	NA
AVS43596.1\|1222551_1223352_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AVS43597.1\|1223491_1224160_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
AVS43598.1\|1224285_1225599_-	histidine transporter	NA	NA	NA	NA
AVS43599.1\|1226015_1227953_+	lipase	NA	NA	NA	NA
AVS43600.1\|1228043_1229249_-\|integrase	site-specific integrase	A0A1X9H094	Staphylococcus_phage	2.5e-221	99.5
AVS43601.1\|1229374_1229989_+	ATPase	A7TW88	Staphylococcus_phage	7.9e-107	100.0
AVS43602.1\|1229985_1230132_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	9.8e-16	95.8
AVS43603.1\|1230446_1231367_-	exonuclease	B5WZL1	Staphylococcus_phage	2.5e-173	100.0
AVS43604.1\|1231382_1231997_-	helix-turn-helix domain-containing protein	B5WZL2	Staphylococcus_phage	9.0e-111	100.0
AVS43605.1\|1232168_1232396_+	BetR domain protein	B5WZL3	Staphylococcus_phage	3.3e-34	100.0
AVS43606.1\|1232992_1233136_+	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
AVS43607.1\|1233125_1233335_-	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
AVS43608.1\|1233390_1233636_+	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
AVS43609.1\|1233604_1233970_-	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	1.2e-62	99.2
AVS43610.1\|1234024_1234240_+	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AVS43611.1\|1234264_1234528_+	helix-turn-helix domain-containing protein	B7T0G2	Staphylococcus_virus	2.8e-45	100.0
AVS43612.1\|1234539_1234701_+	DUF1270 domain-containing protein	Q4ZDR6	Staphylococcus_virus	1.9e-20	98.1
AVS43613.1\|1234782_1235106_+	TrmB family transcriptional regulator	A0A2I6PF12	Staphylococcus_phage	1.6e-50	94.4
AVS43614.1\|1235120_1235483_+	hypothetical protein	Q4ZCH9	Staphylococcus_virus	1.9e-55	99.2
AVS43615.1\|1235479_1236646_+	DUF2800 domain-containing protein	B5WZM3	Staphylococcus_phage	1.6e-217	98.2
AVS43616.1\|1236672_1237227_+	DUF2815 domain-containing protein	M9QRS1	Staphylococcus_phage	1.4e-99	100.0
AVS45219.1\|1237295_1239248_+	DNA polymerase	A0A2I6PE86	Staphylococcus_phage	0.0e+00	99.8
AVS43617.1\|1239260_1239446_+	DUF3113 domain-containing protein	A0A2I6PEM8	Staphylococcus_phage	2.1e-26	98.4
AVS43618.1\|1239445_1239847_+	PVL family protein	A0A2I6PF14	Staphylococcus_phage	1.2e-68	100.0
AVS43619.1\|1240106_1240307_+	hypothetical protein	A0A2I6PF32	Staphylococcus_phage	6.2e-29	98.5
AVS43620.1\|1240315_1240564_+	hypothetical protein	Q8SDR2	Staphylococcus_virus	1.8e-41	100.0
AVS43621.1\|1240578_1240863_+	hypothetical protein	Q9MBR2	Staphylococcus_prophage	1.4e-45	98.9
AVS43622.1\|1240855_1241110_+	DUF1024 domain-containing protein	A0A2I6PDI5	Staphylococcus_phage	3.0e-36	91.7
AVS43623.1\|1241072_1241267_+	hypothetical protein	A7TWH6	Staphylococcus_phage	2.9e-23	100.0
AVS43624.1\|1241259_1241793_+	dUTP pyrophosphatase	Q4ZDW8	Staphylococcus_virus	5.3e-91	95.5
AVS43625.1\|1241829_1242036_+	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	8.4e-21	77.9
AVS43626.1\|1242032_1242236_+	hypothetical protein	A0A2I6PEQ8	Staphylococcus_phage	3.4e-30	100.0
AVS43627.1\|1242228_1242465_+	hypothetical protein	A7TWB3	Staphylococcus_phage	9.6e-37	98.7
AVS43628.1\|1242448_1242841_+	hypothetical protein	A7TWI1	Staphylococcus_phage	1.2e-63	98.5
AVS43629.1\|1242840_1242993_+	transcriptional regulator	A7TWI2	Staphylococcus_phage	2.6e-19	98.0
AVS43630.1\|1243060_1243261_+	DUF1514 domain-containing protein	Q9B0E8	Staphylococcus_virus	3.8e-26	100.0
AVS43631.1\|1243312_1245760_+	hypothetical protein	M1RZC5	Staphylococcus_phage	0.0e+00	99.0
AVS43632.1\|1245705_1245906_-	hypothetical protein	Q4ZCN1	Staphylococcus_virus	1.9e-30	98.5
AVS43633.1\|1245862_1245967_-	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	2.7e-12	100.0
AVS43634.1\|1246100_1246391_+	VRR-NUC domain-containing protein	A7TWI5	Staphylococcus_phage	4.9e-51	100.0
AVS43635.1\|1246371_1247739_+	ATP-dependent helicase	A7TWI6	Staphylococcus_phage	1.2e-264	100.0
AVS43636.1\|1247751_1248189_+	transcriptional regulator	A7TWI7	Staphylococcus_phage	6.1e-77	100.0
AVS43637.1\|1248345_1248678_+	HNH endonuclease	A7TWI8	Staphylococcus_phage	3.1e-49	97.8
AVS43638.1\|1248789_1249095_+\|terminase	phage terminase small subunit P27 family	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
AVS43639.1\|1249084_1250776_+\|terminase	terminase large subunit	M9QX14	Staphylococcus_phage	0.0e+00	100.0
AVS43640.1\|1250780_1252019_+\|portal	phage portal protein	A0A2I6PF26	Staphylococcus_phage	3.4e-234	99.8
AVS43641.1\|1252002_1252776_+\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
AVS45220.1\|1252787_1253951_+\|capsid	phage major capsid protein	A0A2I6PEQ3	Staphylococcus_phage	4.7e-217	99.5
AVS43642.1\|1254019_1254298_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AVS43643.1\|1254309_1254642_+	hypothetical protein	A0A2I6PES3	Staphylococcus_phage	4.1e-57	100.0
AVS43644.1\|1254638_1255040_+	hypothetical protein	A0A2I6PF54	Staphylococcus_phage	8.1e-68	100.0
AVS43645.1\|1255040_1255436_+	DUF3168 domain-containing protein	A0A2I6PEQ4	Staphylococcus_phage	8.8e-67	100.0
AVS43646.1\|1255470_1256112_+\|tail	phage tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AVS43647.1\|1256203_1256659_+\|tail	phage tail protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AVS43648.1\|1256716_1257067_+	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AVS43649.1\|1257108_1257267_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
1257202:1257219	attR	NA	NA	NA	NA
AVS43650.1\|1257280_1263481_+\|tail	phage tail tape measure protein	U5U762	Staphylococcus_phage	0.0e+00	97.9
AVS43651.1\|1263480_1264305_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AVS43652.1\|1264313_1265897_+	peptidase	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
AVS43653.1\|1265896_1266187_+	hypothetical protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AVS43654.1\|1266202_1268113_+	hypothetical protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
AVS43655.1\|1268112_1269579_+	DUF2479 domain-containing protein	M1TB09	Staphylococcus_phage	2.7e-254	100.0
AVS43656.1\|1269578_1269968_+	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AVS43657.1\|1269960_1270125_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AVS43658.1\|1270170_1270470_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AVS43659.1\|1270605_1271043_+\|holin	phage holin	A0EWV0	Staphylococcus_virus	5.9e-72	96.6
AVS43660.1\|1271023_1272469_+	CHAP domain-containing protein	A0EWV1	Staphylococcus_virus	5.0e-293	98.8
AVS43661.1\|1273056_1273356_+	hypothetical protein	A7TWL2	Staphylococcus_phage	9.9e-47	95.7

DBSCAN-SWA_3

1669405 : 1677225

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS44012.1\|1669405_1670461_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AVS44013.1\|1670460_1671147_-	DNA-binding response regulator	NA	NA	NA	NA
AVS44014.1\|1671121_1671595_-	DoxX family protein	NA	NA	NA	NA
AVS44015.1\|1671936_1672377_-	hypothetical protein	NA	NA	NA	NA
AVS44016.1\|1672656_1673241_-	hypothetical protein	NA	NA	NA	NA
AVS44017.1\|1673339_1674053_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AVS44018.1\|1674056_1674476_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AVS44019.1\|1674477_1675146_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AVS44020.1\|1675496_1676090_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.4e-38	43.5
AVS44021.1\|1676073_1677225_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_4

1691114 : 1705252

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS44032.1\|1691114_1692173_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	5.7e-20	26.5
AVS44033.1\|1692331_1692874_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AVS44034.1\|1693425_1694343_-	lipid kinase	A0A1V0SBJ0	Catovirus	8.2e-07	22.0
AVS44035.1\|1694433_1694535_+	hypothetical protein	NA	NA	NA	NA
AVS44036.1\|1694612_1696118_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AVS44037.1\|1696179_1696428_-	hypothetical protein	NA	NA	NA	NA
AVS44038.1\|1696457_1696958_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.7e-52	66.2
AVS44039.1\|1696977_1697844_-	EamA/RhaT family transporter	NA	NA	NA	NA
AVS44040.1\|1698228_1698378_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AVS44041.1\|1698645_1699044_+	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AVS44042.1\|1699006_1701112_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AVS44043.1\|1701231_1702203_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AVS44044.1\|1702579_1703551_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2
AVS44045.1\|1703537_1704494_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	5.5e-06	60.0
AVS44046.1\|1704490_1705252_+	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.2e-17	30.1

DBSCAN-SWA_5

1884208 : 1930748

Streptococcus_phage(28.57%)

protease,holin,tRNA,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS44214.1\|1884208_1885776_-\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
AVS44215.1\|1886071_1887718_+\|transposase	IS5/IS1182 family transposase	A0ZS58	Staphylococcus_virus	5.9e-290	98.5
AVS44216.1\|1887744_1888734_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AVS44217.1\|1889028_1889424_+	transcriptional regulator Spx	NA	NA	NA	NA
AVS44218.1\|1889794_1890514_+	adaptor protein MecA	NA	NA	NA	NA
AVS44219.1\|1890634_1891621_+	competence protein CoiA	NA	NA	NA	NA
AVS44220.1\|1891668_1893477_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	1.2e-46	24.5
AVS44221.1\|1893936_1894743_-	DsbA family protein	NA	NA	NA	NA
AVS44222.1\|1894765_1895131_-	globin	NA	NA	NA	NA
AVS44223.1\|1895234_1895828_-	CYTH domain-containing protein	NA	NA	NA	NA
AVS44224.1\|1896013_1896361_+	hypothetical protein	NA	NA	NA	NA
AVS44225.1\|1896377_1897013_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
AVS44226.1\|1897029_1897839_+	NAD(+) kinase	NA	NA	NA	NA
AVS44227.1\|1897835_1898690_+	RluA family pseudouridine synthase	NA	NA	NA	NA
AVS44228.1\|1898710_1900096_+	magnesium transporter	NA	NA	NA	NA
AVS44229.1\|1900105_1901950_+	sodium:proton antiporter	NA	NA	NA	NA
AVS44230.1\|1902227_1902998_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA
AVS44231.1\|1903193_1904279_-	AI-2E family transporter	NA	NA	NA	NA
AVS44232.1\|1904620_1906189_+	alanine:cation symporter family protein	NA	NA	NA	NA
AVS44233.1\|1906331_1907090_+	esterase family protein	NA	NA	NA	NA
AVS44234.1\|1907255_1907981_+	hypothetical protein	NA	NA	NA	NA
AVS44235.1\|1907982_1908834_+	base excision DNA repair protein	NA	NA	NA	NA
AVS44236.1\|1909576_1910086_+	hypothetical protein	NA	NA	NA	NA
AVS44237.1\|1910198_1911407_-	MFS transporter	NA	NA	NA	NA
AVS44238.1\|1911366_1912542_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA
AVS44239.1\|1912973_1914458_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
AVS44240.1\|1914438_1914699_+	hypothetical protein	NA	NA	NA	NA
AVS44241.1\|1914698_1916261_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	3.8e-36	28.3
AVS44242.1\|1916562_1917366_+	hypothetical protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
AVS44243.1\|1917584_1919909_+	PDZ domain-containing protein	W5SAB9	Pithovirus	4.0e-10	26.8
AVS44244.1\|1919925_1921284_+	Ktr system potassium uptake protein D	NA	NA	NA	NA
AVS44245.1\|1921422_1922934_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AVS44246.1\|1923422_1923992_-	competence protein ComK	NA	NA	NA	NA
AVS44247.1\|1924201_1924420_+	IDEAL domain-containing protein	NA	NA	NA	NA
AVS44248.1\|1924500_1925487_-	lipoate--protein ligase	NA	NA	NA	NA
AVS44249.1\|1925685_1925862_+	DUF2187 domain-containing protein	NA	NA	NA	NA
AVS44250.1\|1925876_1926479_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVS45247.1\|1926779_1926857_+\|holin	putative holin-like toxin	NA	NA	NA	NA
AVS44251.1\|1927395_1927497_+	hypothetical protein	NA	NA	NA	NA
AVS45248.1\|1927506_1927779_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AVS44252.1\|1927822_1929787_+	DUF1430 domain-containing protein	NA	NA	NA	NA
AVS44253.1\|1929789_1930110_+	hypothetical protein	NA	NA	NA	NA
AVS44254.1\|1930106_1930748_+\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-19	33.7

DBSCAN-SWA_6

1963725 : 1972198

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS44286.1\|1963725_1964208_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
AVS44287.1\|1964194_1965319_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AVS44288.1\|1965322_1966027_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	41.6
AVS44289.1\|1966026_1966290_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AVS44290.1\|1966291_1966963_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AVS44291.1\|1966955_1969145_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.1e-140	39.2
AVS44292.1\|1969123_1970608_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.5e-46	31.7
AVS44293.1\|1970600_1971629_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.6e-62	41.4
AVS44294.1\|1971631_1972198_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1

DBSCAN-SWA_7

2521967 : 2530279

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS44798.1\|2521967_2522753_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
AVS44799.1\|2522878_2523769_-	endonuclease	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AVS44800.1\|2523778_2525125_-	ATP-dependent helicase	A0A1V0SIR5	Klosneuvirus	1.4e-55	34.0
AVS44801.1\|2525238_2526339_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
AVS44802.1\|2526341_2527019_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AVS44803.1\|2527149_2528256_-	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AVS44804.1\|2528479_2530279_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-54	36.0

DBSCAN-SWA_8

2573784 : 2631581

uncultured_Mediterranean_phage(15.79%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS44849.1\|2573784_2575053_-\|protease	collagenase-like protease	Q6DW11	Phage_TP	4.0e-36	31.7
AVS44850.1\|2575064_2575988_-	U32 family peptidase	NA	NA	NA	NA
AVS44851.1\|2575990_2576629_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	1.6e-09	28.8
AVS44852.1\|2576913_2577222_-	DUF1292 domain-containing protein	NA	NA	NA	NA
AVS44853.1\|2577236_2577665_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
AVS44854.1\|2577668_2577929_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
AVS44855.1\|2577991_2580622_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-64	34.4
AVS44856.1\|2580964_2583442_-	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	1.1e-66	29.0
AVS44857.1\|2583443_2584112_-	tetratricopeptide repeat protein	NA	NA	NA	NA
AVS44858.1\|2584793_2585912_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AVS44859.1\|2585912_2587055_-	cysteine desulfurase	A0A1X7QGF3	Faustovirus	8.3e-33	29.3
AVS44860.1\|2587364_2588378_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AVS44861.1\|2588614_2588761_-	hypothetical protein	NA	NA	NA	NA
AVS44862.1\|2588800_2588983_-	CsbD family protein	NA	NA	NA	NA
AVS44863.1\|2589082_2589505_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
AVS44864.1\|2589589_2590864_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	6.3e-106	50.9
AVS44865.1\|2591024_2591798_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
AVS44866.1\|2591797_2591926_-	hypothetical protein	NA	NA	NA	NA
AVS44867.1\|2592258_2594025_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	1.3e-16	27.3
AVS44868.1\|2594040_2595303_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
AVS44869.1\|2595763_2596639_-	cell wall amidase	A0A0N9SGH1	Paenibacillus_phage	4.7e-12	33.7
AVS44870.1\|2596635_2597088_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
AVS44871.1\|2597099_2599289_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	6.9e-12	37.7
AVS44872.1\|2599716_2600235_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AVS44873.1\|2600256_2602530_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.2e-64	29.3
AVS44874.1\|2602732_2605012_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AVS44875.1\|2605286_2605547_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AVS44876.1\|2605565_2606705_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AVS44877.1\|2606727_2607753_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AVS44878.1\|2607754_2608759_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AVS44879.1\|2608790_2609393_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AVS44880.1\|2609406_2609862_-	ACT domain-containing protein	NA	NA	NA	NA
AVS44881.1\|2609874_2611167_-	GTPase ObgE	NA	NA	NA	NA
AVS44882.1\|2611922_2612207_-	50S ribosomal protein L27	NA	NA	NA	NA
AVS44883.1\|2612218_2612539_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
AVS44884.1\|2612544_2612853_-	50S ribosomal protein L21	NA	NA	NA	NA
AVS44885.1\|2613145_2613676_-	rod shape-determining protein MreD	NA	NA	NA	NA
AVS44886.1\|2613675_2614518_-	rod shape-determining protein MreC	NA	NA	NA	NA
AVS44887.1\|2614717_2614837_-	hypothetical protein	NA	NA	NA	NA
AVS44888.1\|2614910_2615384_-	DUF4930 domain-containing protein	NA	NA	NA	NA
AVS44889.1\|2615543_2615741_+	hypothetical protein	NA	NA	NA	NA
AVS44890.1\|2615856_2616141_-	hypothetical protein	NA	NA	NA	NA
AVS44891.1\|2616433_2618008_-	Vga family ABC-F type ribosomal protection protein	A0A1B0RXA0	Streptococcus_phage	4.0e-70	37.7
AVS44892.1\|2618324_2618708_-\|transposase	transposase	NA	NA	NA	NA
AVS44893.1\|2618708_2620607_-\|transposase	transposase	NA	NA	NA	NA
AVS44894.1\|2620603_2621689_-\|transposase	transposase	A0A0A8WIF9	Clostridium_phage	5.8e-12	28.2
AVS44895.1\|2621804_2622362_-	JAB domain-containing protein	NA	NA	NA	NA
AVS44896.1\|2622358_2623066_-	prepilin peptidase	NA	NA	NA	NA
AVS44897.1\|2623326_2624598_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
AVS44898.1\|2624610_2627241_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	3.7e-153	40.4
AVS44899.1\|2627643_2628204_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
AVS44900.1\|2628426_2629500_-	AbrB family transcriptional regulator	NA	NA	NA	NA
AVS44901.1\|2629533_2629647_-	hypothetical protein	NA	NA	NA	NA
AVS44902.1\|2629934_2631581_+\|transposase	IS1182-like element ISSau3 family transposase	Q9MBP7	Staphylococcus_prophage	1.0e-294	99.8

DBSCAN-SWA_9

2739597 : 2860566

140

Staphylococcus_phage(70.18%)

protease,holin,head,tRNA,integrase,transposase,tail,capsid,plate,terminase,portal

attL 2809320:2809337|attR 2864850:2864867

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS44994.1\|2739597_2746146_-	peptidase	A0A2H4PQU6	Staphylococcus_phage	6.3e-295	88.6
AVS44995.1\|2746469_2746781_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.5e-50	96.1
AVS44996.1\|2746802_2749220_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.8
AVS44997.1\|2749508_2750690_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	3.6e-217	99.5
AVS44998.1\|2750799_2751753_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-79	99.3
AVS44999.1\|2751749_2752313_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	1.1e-99	95.7
AVS45000.1\|2752431_2752833_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVS45001.1\|2753405_2754233_-	alpha/beta hydrolase	NA	NA	NA	NA
AVS45002.1\|2754235_2754355_-	hypothetical protein	NA	NA	NA	NA
AVS45003.1\|2754366_2754558_-	hypothetical protein	NA	NA	NA	NA
AVS45004.1\|2754466_2755468_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.0e-183	99.1
AVS45005.1\|2755589_2756054_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-69	98.1
AVS45006.1\|2756066_2757248_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
AVS45007.1\|2757258_2757891_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.4e-112	99.0
AVS45274.1\|2757897_2758929_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.8e-195	98.3
AVS45008.1\|2759421_2760924_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	5.0e-30	98.6
AVS45009.1\|2761566_2761881_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.3e-52	98.1
AVS45010.1\|2761880_2763173_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	2.6e-216	95.1
AVS45011.1\|2763259_2764114_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AVS45012.1\|2764389_2764614_-	hypothetical protein	NA	NA	NA	NA
AVS45013.1\|2764812_2765283_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	7.7e-70	85.8
AVS45014.1\|2765395_2765839_+	competence protein ComK	NA	NA	NA	NA
AVS45015.1\|2765825_2766269_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-49	77.4
AVS45016.1\|2766566_2767202_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVS45017.1\|2767368_2767989_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVS45018.1\|2768446_2769160_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AVS45019.1\|2769418_2769721_+	hypothetical protein	NA	NA	NA	NA
AVS45020.1\|2769975_2770341_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AVS45021.1\|2770337_2770691_+	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	4.2e-20	97.4
AVS45022.1\|2770940_2771774_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-158	99.6
AVS45023.1\|2771985_2772894_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
AVS45024.1\|2773018_2774212_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AVS45025.1\|2774583_2776176_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
AVS45275.1\|2776468_2777215_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	3.3e-139	97.2
AVS45026.1\|2777219_2777693_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	9.5e-84	98.1
AVS45027.1\|2777758_2778016_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AVS45028.1\|2778012_2779014_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.5e-183	96.7
AVS45029.1\|2779018_2780497_-	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-282	97.2
AVS45276.1\|2780655_2781111_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.5e-75	94.5
AVS45030.1\|2781413_2782064_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	1.0e-51	88.4
AVS45031.1\|2782144_2783140_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	3.8e-74	97.2
AVS45032.1\|2783215_2783842_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	4.5e-81	84.1
AVS45033.1\|2783882_2784227_+	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	5.1e-55	94.7
AVS45034.1\|2784324_2784897_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
AVS45035.1\|2785045_2786413_-	FRG domain-containing protein	NA	NA	NA	NA
AVS45036.1\|2786412_2786982_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.2e-39	54.8
AVS45037.1\|2787174_2787621_-	DUF1433 domain-containing protein	NA	NA	NA	NA
AVS45038.1\|2787702_2787927_-	hypothetical protein	NA	NA	NA	NA
AVS45039.1\|2788071_2788167_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
AVS45040.1\|2788289_2788391_+	hypothetical protein	NA	NA	NA	NA
AVS45041.1\|2788967_2790535_-\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
AVS45042.1\|2790671_2791115_-	DUF1433 domain-containing protein	NA	NA	NA	NA
AVS45043.1\|2792081_2794502_+	hyaluronate lyase	NA	NA	NA	NA
AVS45277.1\|2794627_2794987_-	DUF1433 domain-containing protein	NA	NA	NA	NA
AVS45044.1\|2795214_2795664_-	DUF1433 domain-containing protein	NA	NA	NA	NA
AVS45045.1\|2795706_2797317_+	lipase	NA	NA	NA	NA
AVS45046.1\|2797331_2797631_+	secretion protein	NA	NA	NA	NA
AVS45047.1\|2797892_2799710_-	NTPase	NA	NA	NA	NA
AVS45048.1\|2799746_2800901_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.8e-39	36.3
AVS45049.1\|2800893_2802633_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.6e-285	98.5
AVS45050.1\|2802812_2803532_-\|protease	serine protease	A0A2H4PQP1	Staphylococcus_phage	1.0e-129	98.3
AVS45051.1\|2803701_2804418_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	6.6e-129	97.1
AVS45052.1\|2804581_2805298_-\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	5.3e-86	64.7
AVS45053.1\|2805464_2806181_-\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	5.5e-83	62.6
AVS45054.1\|2806304_2807024_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	6.4e-124	93.7
AVS45055.1\|2807324_2807570_+	hypothetical protein	NA	NA	NA	NA
AVS45056.1\|2808038_2808554_+	hypothetical protein	NA	NA	NA	NA
AVS45057.1\|2808800_2810147_+	DUF4041 domain-containing protein	M1NRY5	Streptococcus_phage	6.7e-66	51.3
2809320:2809337	attL	NA	NA	NA	NA
AVS45058.1\|2810733_2810970_+	hypothetical protein	NA	NA	NA	NA
AVS45059.1\|2811914_2812106_+	hypothetical protein	NA	NA	NA	NA
AVS45060.1\|2812365_2813142_-	exotoxin	NA	NA	NA	NA
AVS45061.1\|2813425_2814181_-	exotoxin	A0A075M4C7	Staphylococcus_phage	1.9e-38	40.4
AVS45062.1\|2814219_2815005_-	exotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	2.9e-45	42.7
AVS45063.1\|2815158_2815887_-	exotoxin	A0A1X9H080	Staphylococcus_phage	1.3e-28	39.8
AVS45064.1\|2815921_2816641_-	exotoxin	A0A1X9H080	Staphylococcus_phage	4.9e-23	34.6
AVS45065.1\|2816922_2817687_-	exotoxin	A0A1X9H080	Staphylococcus_phage	1.5e-33	40.8
AVS45066.1\|2818321_2818525_-	hypothetical protein	Q4ZBW5	Staphylococcus_virus	1.8e-15	62.7
AVS45067.1\|2819067_2820513_-	CHAP domain-containing protein	M9QQN5	Staphylococcus_phage	2.0e-286	96.7
AVS45068.1\|2820493_2820931_-\|holin	phage holin	M9QTA6	Staphylococcus_phage	2.6e-72	98.6
AVS45069.1\|2820981_2822994_-\|tail	phage tail protein	Q4ZA81	Staphylococcus_virus	0.0e+00	95.5
AVS45070.1\|2823006_2824881_-	CHAP domain-containing protein	Q4ZBX1	Staphylococcus_virus	0.0e+00	97.0
AVS45071.1\|2825017_2825317_-	DUF2951 domain-containing protein	B7T0E7	Staphylococcus_virus	2.5e-42	100.0
AVS45278.1\|2825357_2825531_-	XkdX family protein	A0A059T7K6	Staphylococcus_phage	1.3e-27	100.0
AVS45072.1\|2825540_2825918_-	DUF2977 domain-containing protein	B7T0E5	Staphylococcus_virus	6.4e-59	96.0
AVS45073.1\|2825917_2827741_-\|plate	phage baseplate upper protein	Q4ZDD5	Staphylococcus_virus	2.6e-283	95.2
AVS45074.1\|2827740_2829639_-	hypothetical protein	A0A0H3U448	Staphylococcus_phage	0.0e+00	91.0
AVS45075.1\|2829651_2831538_-	peptidase	Q4ZAG4	Staphylococcus_virus	0.0e+00	100.0
AVS45076.1\|2831548_2832484_-\|tail	phage tail protein	Q4ZB28	Staphylococcus_virus	6.3e-180	100.0
AVS45077.1\|2832498_2835642_-\|terminase	terminase	Q4ZB30	Staphylococcus_virus	9.4e-305	99.6
AVS45078.1\|2835644_2835986_-	hypothetical protein	W5R8J4	Staphylococcus_phage	3.5e-56	100.0
AVS45079.1\|2836006_2836501_-	hypothetical protein	A7YGV7	Staphylococcus_virus	2.5e-87	100.0
AVS45080.1\|2836562_2837123_-\|tail	phage tail protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
AVS45081.1\|2837109_2837547_-	DUF3168 domain-containing protein	A0A0E3T9M9	Staphylococcus_phage	4.6e-77	99.3
AVS45082.1\|2837559_2837973_-	hypothetical protein	A0A0E3XCY8	Staphylococcus_phage	1.5e-77	100.0
AVS45083.1\|2837959_2838295_-\|head,tail	phage head-tail adapter protein	A7YGU9	Staphylococcus_virus	3.0e-60	99.1
AVS45084.1\|2838287_2838602_-\|head,tail	phage head-tail adapter protein	A7YGU8	Staphylococcus_virus	2.4e-51	97.1
AVS45085.1\|2838601_2838928_-	Rho termination protein	Q4ZAA2	Staphylococcus_virus	5.6e-51	100.0
AVS45086.1\|2838944_2839757_-\|capsid	major capsid protein	Q4ZAA4	Staphylococcus_virus	3.1e-143	99.6
AVS45087.1\|2839773_2840364_-	hypothetical protein	A0A0H4IP83	Staphylococcus_phage	9.4e-81	83.7
AVS45088.1\|2840461_2841442_-\|head	phage head morphogenesis protein	A0A0E3XC69	Staphylococcus_phage	2.5e-179	98.5
AVS45089.1\|2841380_2842859_-\|portal	phage portal protein	A0A2H4PQK7	Staphylococcus_phage	2.3e-285	99.8
AVS45090.1\|2842812_2844021_-\|terminase	PBSX family phage terminase large subunit	R4IG95	Staphylococcus_phage	2.3e-235	99.8
AVS45279.1\|2844013_2844331_-	hypothetical protein	A0A2I6PCU5	Staphylococcus_phage	7.3e-48	95.2
AVS45091.1\|2844676_2844931_+	hypothetical protein	Q4ZB48	Staphylococcus_virus	7.9e-29	81.0
AVS45092.1\|2844860_2845262_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
AVS45093.1\|2845262_2845436_-	transcriptional regulator	Q4ZBK0	Staphylococcus_phage	6.4e-22	100.0
AVS45094.1\|2845432_2845639_-	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	9.6e-25	85.3
AVS45095.1\|2845635_2845881_-	hypothetical protein	A9CR89	Staphylococcus_phage	6.5e-28	100.0
AVS45096.1\|2845917_2846451_-	dUTP pyrophosphatase	Q4ZDW8	Staphylococcus_virus	5.3e-91	95.5
AVS45097.1\|2846443_2846692_-	DUF1024 domain-containing protein	A7TWB0	Staphylococcus_phage	1.0e-36	96.3
AVS45280.1\|2846684_2847050_-	acetyltransferase	A7YGS3	Staphylococcus_virus	6.6e-61	95.9
AVS45098.1\|2847668_2847875_-	hypothetical protein	B7T0H4	Staphylococcus_virus	3.9e-34	98.5
AVS45099.1\|2847888_2848578_-	methylase	B7T0H3	Staphylococcus_virus	6.1e-132	100.0
AVS45100.1\|2848574_2848775_-	hypothetical protein	B7T0H2	Staphylococcus_virus	3.7e-29	100.0
AVS45101.1\|2848777_2849035_-	DUF3310 domain-containing protein	B7T0H1	Staphylococcus_virus	7.5e-43	100.0
AVS45102.1\|2849034_2849397_-	hypothetical protein	B7T0B4	Staphylococcus_virus	2.4e-47	78.3
AVS45103.1\|2849408_2849666_-	XRE family transcriptional regulator	Q9MBR5	Staphylococcus_prophage	2.7e-40	98.8
AVS45104.1\|2849666_2849852_-	DUF3113 domain-containing protein	Q9MBR6	Staphylococcus_prophage	9.2e-27	100.0
AVS45105.1\|2849856_2850261_-	DUF1064 domain-containing protein	Q9MBR7	Staphylococcus_prophage	5.4e-72	100.0
AVS45106.1\|2850271_2850493_-	hypothetical protein	Q9G021	Staphylococcus_phage	4.9e-35	98.6
AVS45107.1\|2850495_2850711_-	hypothetical protein	A0A0E3XD74	Staphylococcus_phage	8.2e-35	98.6
AVS45108.1\|2850707_2851949_-	damage-inducible protein	C8CGZ3	Staphylococcus_phage	4.8e-228	99.3
AVS45109.1\|2851945_2852302_-	hypothetical protein	M9NS37	Staphylococcus_phage	5.3e-63	98.3
AVS45110.1\|2852301_2853057_-	DnaD domain protein	C8CGZ1	Staphylococcus_phage	3.3e-131	92.8
AVS45111.1\|2853049_2853724_-	hypothetical protein	C8CGZ0	Staphylococcus_phage	3.4e-127	98.7
AVS45112.1\|2853737_2854166_-	single-stranded DNA-binding protein	A0A0E3XC62	Staphylococcus_phage	1.5e-64	91.5
AVS45113.1\|2854165_2854789_-	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
AVS45114.1\|2854781_2855003_-	DUF2483 domain-containing protein	B2ZYV2	Staphylococcus_phage	3.2e-34	100.0
AVS45115.1\|2855012_2855273_-	DUF1108 domain-containing protein	A0A0H4IP62	Staphylococcus_phage	4.9e-42	95.3
AVS45116.1\|2855364_2855685_-	hypothetical protein	A0A0K1LL36	Staphylococcus_phage	1.4e-54	99.1
AVS45117.1\|2855685_2855853_-	DUF1270 domain-containing protein	Q9MBS6	Staphylococcus_prophage	3.1e-21	96.4
AVS45118.1\|2855866_2856076_-	hypothetical protein	A0A2H4PQR1	Staphylococcus_phage	9.7e-33	100.0
AVS45119.1\|2856088_2856802_-	phage repressor protein	A0A059T7N7	Staphylococcus_phage	7.0e-123	94.9
AVS45120.1\|2856989_2857193_-	hypothetical protein	A0A0E3XBM9	Staphylococcus_phage	4.7e-32	100.0
AVS45121.1\|2857265_2857478_-	transcriptional regulator	Q4ZAL9	Staphylococcus_virus	1.9e-31	98.6
AVS45122.1\|2857630_2857945_+	XRE family transcriptional regulator	Q4ZAM0	Staphylococcus_virus	5.7e-53	100.0
AVS45123.1\|2857966_2858425_+	toxin	B2ZYU2	Staphylococcus_phage	1.2e-83	100.0
AVS45124.1\|2858445_2858937_+	hypothetical protein	Q4ZBN8	Staphylococcus_phage	7.5e-84	100.0
AVS45125.1\|2858940_2859456_+	hypothetical protein	I1W624	Staphylococcus_phage	2.2e-33	95.9
AVS45126.1\|2859516_2860566_+\|integrase	site-specific integrase	A0A2H4JB53	uncultured_Caudovirales_phage	5.2e-183	90.3
2864850:2864867	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage