CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP028175	Salmonella enterica strain CFSAN064033 plasmid pGMI17-001_3, complete sequence	0 crisprs	NA	0
CP028174	Salmonella enterica strain CFSAN064033 plasmid pGMI17-001_2, complete sequence	0 crisprs	NA	0
CP028172	Salmonella enterica strain CFSAN064033 chromosome, complete genome	0 crisprs	DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	7
CP028173	Salmonella enterica strain CFSAN064033 plasmid pGMI17-001_1, complete sequence	0 crisprs	NA	3

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1018781 : 1026094

Dickeya_phage(16.67%)

protease,integrase

attL 1020032:1020046|attR 1031547:1031561

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS15597.1\|1018781_1019900_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
AVS15598.1\|1019896_1021843_+	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
1020032:1020046	attL	NA	NA	NA	NA
AVS15599.1\|1021823_1022018_+	hypothetical protein	NA	NA	NA	NA
AVS15600.1\|1021972_1022194_-	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AVS15601.1\|1022517_1022838_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AVS15602.1\|1022868_1025145_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AVS15603.1\|1025357_1025555_-	hypothetical protein	NA	NA	NA	NA
AVS15604.1\|1025716_1026094_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.7e-19	40.2
1031547:1031561	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1077923 : 1179616

107

Salmonella_phage(42.62%)

tail,lysis,capsid,protease,tRNA,terminase,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS15642.1\|1077923_1078727_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
AVS15643.1\|1078719_1080042_+	chromosome partition protein MukF	NA	NA	NA	NA
AVS15644.1\|1080022_1080727_+	chromosome partition protein MukE	NA	NA	NA	NA
AVS15645.1\|1080726_1085193_+	chromosome partition protein MukB	NA	NA	NA	NA
AVS15646.1\|1085537_1087385_+	L,D-transpeptidase	NA	NA	NA	NA
AVS15647.1\|1087644_1088193_+	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
AVS15648.1\|1088220_1088868_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AVS15649.1\|1088929_1090120_-	aspartate aminotransferase	NA	NA	NA	NA
AVS15650.1\|1090304_1091396_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
AVS15651.1\|1092002_1093403_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
AVS15652.1\|1093603_1094065_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AVS15653.1\|1094061_1094295_-	hypothetical protein	NA	NA	NA	NA
AVS15654.1\|1094381_1095596_+	PLP-dependent lyase/thiolase	NA	NA	NA	NA
AVS15655.1\|1095841_1097275_+	sodium:alanine symporter family protein	NA	NA	NA	NA
AVS15656.1\|1097355_1098558_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AVS15657.1\|1098752_1100045_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.3e-252	99.8
AVS15658.1\|1100089_1100338_-	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AVS15659.1\|1100378_1100618_-	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AVS15660.1\|1100660_1101818_-	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AVS15661.1\|1101780_1104708_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	98.8
AVS15662.1\|1104834_1105185_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	6.4e-61	98.3
AVS15663.1\|1105206_1105365_-	hypothetical protein	H6WRX3	Salmonella_phage	2.4e-23	100.0
AVS15664.1\|1105993_1106365_-	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	1.5e-31	50.0
AVS15665.1\|1106342_1107404_-	N-acetyltransferase	NA	NA	NA	NA
AVS15666.1\|1107473_1107869_-	transcriptional regulator	K7PM35	Enterobacteria_phage	3.5e-47	72.5
AVS15667.1\|1107973_1108210_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.6e-26	71.8
AVS15668.1\|1108175_1108550_+	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
AVS15669.1\|1108641_1108830_+	hypothetical protein	NA	NA	NA	NA
AVS15670.1\|1108844_1109900_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.9e-40	53.2
AVS15671.1\|1109902_1110652_+	DNA replication protein DnaC	H6WRX8	Salmonella_phage	6.6e-140	100.0
AVS15672.1\|1110662_1111010_+	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	4.5e-59	100.0
AVS15673.1\|1111006_1111327_+	hypothetical protein	H6WRY0	Salmonella_phage	6.7e-25	65.5
AVS15674.1\|1111326_1111572_+	hypothetical protein	Q5G8U9	Enterobacteria_phage	3.0e-33	88.9
AVS15675.1\|1111882_1113100_+	hypothetical protein	J9Q803	Salmonella_phage	3.1e-118	53.3
AVS15676.1\|1113242_1113569_+	hypothetical protein	NA	NA	NA	NA
AVS15677.1\|1113816_1114050_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
AVS15678.1\|1114166_1114415_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
AVS15679.1\|1114449_1115052_+	hypothetical protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AVS15680.1\|1115051_1115258_+	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AVS15681.1\|1115260_1115872_+	protein NinG	A0A0M4RU10	Salmonella_phage	7.9e-91	96.6
AVS15682.1\|1115868_1116009_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
AVS15683.1\|1116005_1116686_+	antiterminator	I6PDF8	Cronobacter_phage	1.4e-59	53.1
AVS15684.1\|1116758_1116941_-	hypothetical protein	NA	NA	NA	NA
AVS15685.1\|1116995_1117184_+	hypothetical protein	NA	NA	NA	NA
AVS18971.1\|1117386_1117689_+	alpha/beta hydrolase	NA	NA	NA	NA
AVS15686.1\|1117666_1118155_+	lysozyme	M9P0E5	Enterobacteria_phage	1.0e-56	68.1
AVS18970.1\|1118175_1118616_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	6.2e-53	78.0
AVS15687.1\|1118855_1119071_+	hypothetical protein	NA	NA	NA	NA
AVS15688.1\|1119084_1119630_+\|terminase	terminase small subunit	K7P7G0	Enterobacteria_phage	4.5e-53	61.3
AVS15689.1\|1119601_1121536_+\|terminase	phage terminase large subunit family protein	E4WL19	Enterobacteria_phage	7.0e-258	66.1
AVS15690.1\|1121519_1121723_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.0e-18	80.0
AVS15691.1\|1121719_1123306_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	6.4e-185	60.7
AVS15692.1\|1123295_1124810_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	2.1e-100	51.8
AVS15693.1\|1124809_1125157_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	4.6e-19	52.7
AVS15694.1\|1125211_1126240_+\|capsid	minor capsid protein E	A0A2I6TCE5	Escherichia_phage	2.4e-108	58.4
AVS15695.1\|1126303_1126678_+	DNA breaking-rejoining protein	A0A2R9YJP4	Escherichia_phage	4.8e-06	34.9
AVS15696.1\|1126688_1127045_+\|tail	phage tail protein	K7P6U9	Enterobacteria_phage	1.8e-31	58.5
AVS15697.1\|1127054_1127654_+\|tail	phage tail protein	A0A291AWZ0	Escherichia_phage	8.3e-69	68.7
AVS15698.1\|1127653_1128055_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	8.1e-44	59.8
AVS15699.1\|1128067_1128820_+\|tail	phage tail protein	A5LH35	Enterobacteria_phage	1.9e-94	70.0
AVS15700.1\|1128868_1129258_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.5e-31	58.9
AVS15701.1\|1129278_1129581_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	2.8e-25	58.6
AVS15702.1\|1129564_1132657_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	2.4e-268	57.3
AVS15703.1\|1132653_1132986_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
AVS15704.1\|1133084_1133609_+	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.8e-19	35.3
AVS15705.1\|1133698_1134232_-	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AVS15706.1\|1134321_1135017_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
AVS15707.1\|1135026_1135764_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	3.4e-112	75.2
AVS15708.1\|1135661_1136366_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.0e-66	62.6
AVS15709.1\|1139826_1140069_+	hypothetical protein	NA	NA	NA	NA
AVS15710.1\|1140122_1142294_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.2e-128	79.8
AVS15711.1\|1142293_1142875_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	8.6e-95	89.0
AVS15712.1\|1142881_1143112_-\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.0e-18	64.3
AVS15713.1\|1143441_1144320_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	1.6e-172	99.0
AVS15714.1\|1144967_1145594_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AVS15715.1\|1145953_1146640_-	virulence protein	NA	NA	NA	NA
AVS15716.1\|1146910_1147102_-	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AVS15717.1\|1147528_1150141_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
AVS15718.1\|1150348_1151359_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AVS15719.1\|1151524_1152067_+	cell division protein ZapC	NA	NA	NA	NA
AVS15720.1\|1152063_1153173_-	MOSC domain-containing protein	NA	NA	NA	NA
AVS15721.1\|1153271_1155380_+	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AVS15722.1\|1155392_1157300_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AVS15723.1\|1157314_1158568_+	paraquat-inducible protein A	NA	NA	NA	NA
AVS15724.1\|1158572_1160213_+	intermembrane transport protein PqiB	NA	NA	NA	NA
AVS15725.1\|1160209_1160773_+	hypothetical protein	NA	NA	NA	NA
AVS15726.1\|1161028_1161196_+	ribosome modulation factor	NA	NA	NA	NA
AVS15727.1\|1161295_1161814_-	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AVS15728.1\|1161882_1163643_-\|protease	Lon protease family protein	NA	NA	NA	NA
AVS15729.1\|1163828_1164281_+	macrodomain Ter protein	NA	NA	NA	NA
AVS15730.1\|1164352_1165405_-	porin OmpA	NA	NA	NA	NA
AVS15731.1\|1165761_1166271_-	cell division inhibitor SulA	NA	NA	NA	NA
AVS15732.1\|1166487_1167093_+	DNA transformation protein	NA	NA	NA	NA
AVS15733.1\|1167079_1169233_-	TIGR01666 family membrane protein	NA	NA	NA	NA
AVS15734.1\|1169251_1169698_-	YccF domain-containing protein	NA	NA	NA	NA
AVS15735.1\|1169821_1171876_+	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
AVS15736.1\|1171911_1172370_-	methylglyoxal synthase	NA	NA	NA	NA
AVS15737.1\|1172464_1173127_-	DUF2057 domain-containing protein	NA	NA	NA	NA
AVS15738.1\|1173297_1173714_+	CoA-binding protein	NA	NA	NA	NA
AVS15739.1\|1173758_1174076_-	heat-shock protein HspQ	NA	NA	NA	NA
AVS15740.1\|1174133_1175345_-	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AVS15741.1\|1175559_1176108_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AVS15742.1\|1176133_1176913_+	AraC family transcriptional regulator	NA	NA	NA	NA
AVS15743.1\|1176961_1177243_+	acylphosphatase	NA	NA	NA	NA
AVS15744.1\|1177239_1177569_-	sulfurtransferase TusE	NA	NA	NA	NA
AVS15745.1\|1177655_1178315_-	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AVS15746.1\|1178935_1179616_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	2.3e-83	72.0

DBSCAN-SWA_3

2084156 : 2094740

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS16642.1\|2084156_2085587_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
AVS16643.1\|2085660_2086356_-	phosphohydrolase	S4W232	Pandoravirus	1.6e-07	28.0
AVS16644.1\|2086435_2086747_-	hypothetical protein	NA	NA	NA	NA
AVS16645.1\|2087396_2088575_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	6.6e-110	57.2
AVS19012.1\|2088835_2089024_-	cold-shock protein	NA	NA	NA	NA
AVS16646.1\|2089034_2089247_-	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AVS16647.1\|2089701_2090970_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.1e-226	91.9
AVS16648.1\|2090972_2091392_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AVS16649.1\|2091518_2091680_-	hypothetical protein	NA	NA	NA	NA
AVS16650.1\|2092160_2092958_+	protein MtfA	NA	NA	NA	NA
AVS16651.1\|2093329_2093620_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.0e-08	49.1
AVS16652.1\|2094266_2094740_+	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6

DBSCAN-SWA_4

2183701 : 2194208

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS16737.1\|2183701_2185015_-	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1
AVS16738.1\|2185041_2186121_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
AVS16739.1\|2186125_2186899_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AVS16740.1\|2186914_2187889_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AVS16741.1\|2187894_2188446_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
AVS19017.1\|2188446_2189325_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
AVS16742.1\|2189372_2190272_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.0e-30	36.7
AVS16743.1\|2190271_2191357_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AVS16744.1\|2191733_2192627_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AVS16745.1\|2192804_2194208_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.5e-20	32.3

DBSCAN-SWA_5

2262516 : 2271687

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS16800.1\|2262516_2264550_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
AVS16801.1\|2264790_2265249_+	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AVS16802.1\|2265420_2265951_+	hypothetical protein	NA	NA	NA	NA
AVS16803.1\|2266007_2266475_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	5.1e-74	90.3
AVS16804.1\|2266521_2267241_-	DNA-binding response regulator	NA	NA	NA	NA
AVS16805.1\|2267237_2268923_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.1e-278	91.3
AVS16806.1\|2269145_2269877_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AVS16807.1\|2269936_2270044_+	hypothetical protein	NA	NA	NA	NA
AVS16808.1\|2270024_2270756_-	ABC transporter permease	NA	NA	NA	NA
AVS16809.1\|2270739_2271687_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8

DBSCAN-SWA_6

2801016 : 2809950

Enterobacteria_phage(83.33%)

integrase

attL 2798387:2798402|attR 2805167:2805182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2798387:2798402	attL	NA	NA	NA	NA
AVS17266.1\|2801016_2802210_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	8.2e-108	50.4
AVS17267.1\|2802240_2802678_-	hypothetical protein	NA	NA	NA	NA
AVS17268.1\|2802845_2803739_-	DUF4747 domain-containing protein	NA	NA	NA	NA
AVS17269.1\|2803997_2804183_+	hypothetical protein	NA	NA	NA	NA
AVS17270.1\|2804146_2804713_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	4.5e-56	62.7
AVS17271.1\|2804729_2804975_-	hypothetical protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
AVS17272.1\|2804971_2805709_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	4.4e-80	64.4
2805167:2805182	attR	NA	NA	NA	NA
AVS17273.1\|2806509_2807061_+	ASH family protein	Q7M2A7	Enterobacteria_phage	8.6e-36	71.3
AVS17274.1\|2807057_2807285_+	hypothetical protein	NA	NA	NA	NA
AVS17275.1\|2807281_2807602_+	hypothetical protein	NA	NA	NA	NA
AVS17276.1\|2807616_2809950_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.5

DBSCAN-SWA_7

4308876 : 4327032

Burkholderia_phage(45.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS18634.1\|4308876_4309392_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2
AVS18635.1\|4309401_4310883_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
AVS18636.1\|4310885_4311518_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	4.3e-23	54.7
AVS18637.1\|4311510_4312626_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	4.1e-101	52.0
AVS18638.1\|4312616_4312976_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.1e-34	63.3
AVS18639.1\|4313139_4314687_-	hypothetical protein	B9UDL6	Salmonella_phage	3.8e-49	29.9
AVS18640.1\|4314686_4315616_-	glycosyltransferase	S5FKN0	Shigella_phage	1.4e-150	84.1
AVS18641.1\|4315612_4315975_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AVS18642.1\|4316302_4317025_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
AVS18643.1\|4317034_4318078_-	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AVS18644.1\|4318065_4318275_-	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AVS18645.1\|4318274_4319228_-	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AVS18646.1\|4319227_4321582_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
AVS18647.1\|4321678_4321807_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
AVS18648.1\|4321766_4322084_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AVS18649.1\|4322135_4322660_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AVS18650.1\|4322659_4324087_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AVS18651.1\|4324076_4324274_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AVS18652.1\|4324884_4325199_-	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AVS18653.1\|4325211_4325817_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
AVS18654.1\|4325819_4326107_-	hypothetical protein	Q6QIC8	Burkholderia_phage	3.9e-16	49.1
AVS18655.1\|4326684_4327032_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028173

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11693

Enterobacteria_phage(75.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS19107.1\|670_853_-	hypothetical protein	NA	NA	NA	NA
AVS19157.1\|2728_3121_+	cysteine hydrolase	NA	NA	NA	NA
AVS19108.1\|3258_4143_+	EamA family transporter	NA	NA	NA	NA
AVS19109.1\|4174_5374_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AVS19110.1\|5452_6130_+	TetR family transcriptional regulator	NA	NA	NA	NA
AVS19111.1\|6302_7163_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AVS19112.1\|7345_7903_-	recombinase	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
AVS19113.1\|8066_11072_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.9
AVS19114.1\|11159_11693_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.2e-22	36.2

DBSCAN-SWA_2

24733 : 34279

Burkholderia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS19132.1\|24733_26167_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.4e-106	50.9
AVS19133.1\|26200_27409_-	restriction endonuclease	E5E3X4	Burkholderia_phage	2.1e-34	42.5
AVS19134.1\|27653_28250_+	recombinase family protein	E5FFF9	Burkholderia_phage	7.1e-36	43.7
AVS19135.1\|28226_28466_-	hypothetical protein	NA	NA	NA	NA
AVS19136.1\|28565_29921_-	hypothetical protein	NA	NA	NA	NA
AVS19137.1\|30008_30728_-	RepB family plasmid replication initiator protein	I3WF20	Macacine_betaherpesvirus	3.9e-20	28.4
AVS19138.1\|31287_31629_+	ArdK family transcriptional regulator	NA	NA	NA	NA
AVS19160.1\|31643_32435_-	sprT domain-containing protein	NA	NA	NA	NA
AVS19139.1\|32585_33851_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.7e-119	53.8
AVS19140.1\|33838_34279_-	peptidase	A0A1W6JNS2	Morganella_phage	1.2e-27	48.8

DBSCAN-SWA_3

44405 : 50152

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS19152.1\|44405_47642_+	conjugative relaxase	U5J9B0	Bacillus_phage	2.4e-05	27.3
AVS19153.1\|47641_48268_+	hypothetical protein	NA	NA	NA	NA
AVS19154.1\|48483_49320_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AVS19155.1\|49669_50152_-	trimethoprim-resistant dihydrofolate reductase DfrA14	A0A140HLG8	Bacillus_phage	5.4e-18	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028172

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028173

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection