CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3 crisprs	DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csa3,csn2,cas1,cas9	12	37	7	7
CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	0 crisprs	csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028183_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028183_2

541119-541469

Unclear

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAATT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTNTGAAATGTAAATT	CRT

5 spacers

cas6,cas8b2

The CRISPR arrays of CP028183_2

>merge|CP028183|2|541119-541469|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTTTGAAATGTAAATTTGTCATCTGTGGTGTCTTCAACCACTTCTTCTATGTTTTAGTTACTTATTTTGAAATGTAAATTCTGTAAAATCAAAAGTATCATAGAAACAATCTTCGTTTTAGTTACTTATTGTGAAATGTAAATTTCGCCATGACGAAATCTAGCGCTTGTCCTACTAAGTTTTAGTTACTTATTGTGAAATGTAAATGGCACAGTCTTCACGATTTCGGGGATGGGGAAAACTGTTTTAGTTACTTATTGTGAAATGTAAATTAAACAAGTGCTTCTGGCAATACCAACGTTCCATCTTTTTAGTTACTTATTATGAAATGTAAATT

>CP028183|2|1|541119-541469|PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAATT	TGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAATT	CTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAATT	TCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAATG	GCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAATT	AAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAATT

>CP028183|2|1|541119-541468|CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	TTGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAAT	TCTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAAT	TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAAT

>CP028183|2|2|541119-541469|CRT
GTTTTAGTTACTTATTTTGAAATGTAAATT	TGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT
GTTTTAGTTACTTATTTTGAAATGTAAATT	CTGTAAAATCAAAAGTATCATAGAAACAATCTTC
GTTTTAGTTACTTATTGTGAAATGTAAATT	TCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAATG	GCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAATT	AAACAAGTGCTTCTGGCAATACCAACGTTCCATC
TTTTTAGTTACTTATTATGAAATGTAAATT

Protein	Signature genes	Signature genes Name	Protein_function
CP028183.1\|AVS33045.1\|546390_546822_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
CP028183.1\|AVS30543.1\|532171_532822_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
CP028183.1\|AVS30550.1\|538226_538520_+\|PTS-galactitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
CP028183.1\|AVS30548.1\|536517_537168_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
CP028183.1\|AVS30553.1\|541621_541840_-\|hypothetical-protein	unknown	unknown	unknown
CP028183.1\|AVS30557.1\|543614_544073_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
CP028183.1\|AVS30558.1\|546868_548299_-\|capsule-biosynthesis-protein-CapA	unknown	unknown	gnl\|CDD\|225399
CP028183.1\|AVS30556.1\|543248_543608_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
CP028183.1\|AVS30547.1\|536108_536507_+\|hypothetical-protein	unknown	unknown	unknown
CP028183.1\|AVS30559.1\|548419_549235_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP028183.1\|AVS30544.1\|532930_534991_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
CP028183.1\|AVS30549.1\|537164_538211_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
CP028183.1\|AVS30551.1\|538534_539806_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
CP028183.1\|AVS30561.1\|550324_552013_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
CP028183.1\|AVS30545.1\|534994_535597_+\|phosphosugar-isomerase	unknown	unknown	gnl\|CDD\|223865
CP028183.1\|AVS30560.1\|549586_550309_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP028183.1\|AVS30552.1\|539945_540881_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
CP028183.1\|AVS30546.1\|535624_536092_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
CP028183.1\|AVS30554.1\|541858_542437_+\|hypothetical-protein	unknown	unknown	unknown
CP028183.1\|AVS30555.1\|542543_543224_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212

Protein	Function_ID	Function_description	E-value
CP028183.1\|AVS33045.1\|546390_546822_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
CP028183.1\|AVS30543.1\|532171_532822_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	3.03794e-63
CP028183.1\|AVS30550.1\|538226_538520_+\|PTS-galactitol-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
CP028183.1\|AVS30548.1\|536517_537168_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
CP028183.1\|AVS30558.1\|546868_548299_-\|capsule-biosynthesis-protein-CapA	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.52915e-100
CP028183.1\|AVS30557.1\|543614_544073_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
CP028183.1\|AVS30556.1\|543248_543608_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
CP028183.1\|AVS30552.1\|539945_540881_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.37195e-153
CP028183.1\|AVS30559.1\|548419_549235_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.75333e-50
CP028183.1\|AVS30544.1\|532930_534991_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.36772e-80
CP028183.1\|AVS30549.1\|537164_538211_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
CP028183.1\|AVS30551.1\|538534_539806_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
CP028183.1\|AVS30561.1\|550324_552013_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
CP028183.1\|AVS30545.1\|534994_535597_+\|phosphosugar-isomerase	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	5.46618e-76
CP028183.1\|AVS30560.1\|549586_550309_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
CP028183.1\|AVS30546.1\|535624_536092_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.45565e-37
CP028183.1\|AVS30555.1\|542543_543224_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	6.36121e-61

>CP028183.1|AVS30552.1|539945_540881_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAIEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>CP028183.1|AVS30551.1|538534_539806_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>CP028183.1|AVS30550.1|538226_538520_+|PTS-galactitol-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>CP028183.1|AVS30549.1|537164_538211_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>CP028183.1|AVS30548.1|536517_537168_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>CP028183.1|AVS30547.1|536108_536507_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>CP028183.1|AVS30546.1|535624_536092_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>CP028183.1|AVS30545.1|534994_535597_+|phosphosugar-isomerase
MDKKAILDNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>CP028183.1|AVS30544.1|532930_534991_+|PTS-sugar-transporter-subunit-IIA
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANIATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>CP028183.1|AVS30543.1|532171_532822_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFSYEEILADARMLLAMFGKEKIAIKIPAHEAGINVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>CP028183.1|AVS30553.1|541621_541840_-|hypothetical-protein
MYYSAYLPLNFSIGRLCFIVQSIVKKRLFIAFIAKLLTDCSFDYNYSQKTNPINEGFVFWNLFARNNYNGNR
>CP028183.1|AVS30554.1|541858_542437_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>CP028183.1|AVS30555.1|542543_543224_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLSFFPESLNVFHWHQDTFALPAGATRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILQIDEAFITPGKYVQSVEVMQEKDVPEDNKQMLEAILDYLINPKTI
>CP028183.1|AVS30556.1|543248_543608_-|hypothetical-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>CP028183.1|AVS30557.1|543614_544073_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>CP028183.1|AVS33045.1|546390_546822_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>CP028183.1|AVS30558.1|546868_548299_-|capsule-biosynthesis-protein-CapA
MKRRTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKEIKSYPTEKNDSGIYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>CP028183.1|AVS30559.1|548419_549235_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRLKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>CP028183.1|AVS30560.1|549586_550309_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>CP028183.1|AVS30561.1|550324_552013_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK

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Crispr_ID: CP028183_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028183_3

556662-558958

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT

35 spacers

cas2,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of CP028183_3

>merge|CP028183|3|556662-558958|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTATGAAATGTAAATAAAGACCTTCGATTTCATTCTCACTTTCCAGTTAATGTTTTAACTACTTATTATGAAATGTAAATTTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGACGTTTTAACTACTTATTATGAAATGTAAATGCTGGTAAATTTGGCGGAACTAATCGTACTGAAATAGTTTTAACTACTTATTATGAAATGTAAATACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCAGTTTTAACTACTTATTATGAAATGTAAATTATAGTCCCCATATCCATCTGCTATTATCCTCCACGTTTTAACTACTTATTATGAAATGTAAATCGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAAGTTTTAACTACTTATTATGAAATGTAAATACGTTGGACAACGAGGTGAGTATGATATGACTCAAATGTTTTAACTACTTATTATGAAATGTAAATGCGGAATGCGAAGTTGTTATATATAACTTATCTCGCGTTTTAACTACTTATTATGAAATGTAAATTCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATGGTTTTAACTACTTATTATGAAATGTAAATGTGCATATCTCCTATATTCATGGCTGTATATGTGTGTTTTAACTACTTATTATGAAATGTAAATGTCCACATCGACAATAAAAAACACATTGTATCACTTGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAAGTCTACTTGGATTTAGCTCTACACCTGCAACATGAGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTCCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAATAGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAGTTTTAACTACTTATTATGAAATGTAAATTTGTTCGACGGCTTAGACAACCATCACGCTTCTTTAGTTTTAACTACTTATTATGAAATGTAAATTATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGAGTTTTAACTACTTATTATGAAATGTAAATCTCATAAGGATTTCGAGGCGGGTTAAACGACATGTAGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAATGTAAATGTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTTGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATTAATACAAAATATTCATAACTCCTACATCATTATATAGTTTTAACTACTTATTATGAAATGTAAATTTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTCGTTTTAACTACTTATTATGAAATGTAAATTTGGATTTTATTAAATACAGAGTCACGGATTGTATTTGTTTTAACTACTTATTATGAAATGTAAATGGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGCGTTTTAACTACTTATTATGAAATGTAAATCACGTACTTTAATCGGCATCAAACCACCTCGATTTCGTTTTAACTACTTATTATGAAATCTAAATCAAGATATGCTAGAAATGGCGCAAATAGCGCGCGGTTTTAACTACTTATTATGAAATGTAAATACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATATGTTTTAACTACTTATTATGAAATGTAAATCAAAACAGAGAACGCGTGTTCATTATCGGACATCTTAGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATGTAAATAAAAACTATGCAATTAGCAAAGTGATTTTATGTAATTGTTTTAACTACTTATTATGAAATATAAATTAACGAGCCAATTAAACCATCTTCTTCTAGTAATGTTTTAACTACTTATTATGAAATCATAAA

>CP028183|3|2|556662-558895|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT

>CP028183|3|2|556662-558958|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

>CP028183|3|3|556662-558958|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGACCTTCGATTTCATTCTCACTTTCCAGTTAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGGTAAATTTGGCGGAACTAATCGTACTGAAATA
GTTTTAACTACTTATTATGAAATGTAAAT	ACATATTAGCCCTTATATAGAAGCCCCGCCCCTACCA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAGTCCCCATATCCATCTGCTATTATCCTCCAC
GTTTTAACTACTTATTATGAAATGTAAAT	CGCTTCACGTTGGTTTTTCGTAGCCCAATTGCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTGGACAACGAGGTGAGTATGATATGACTCAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCGGAATGCGAAGTTGTTATATATAACTTATCTCGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCTTAAATGGTGTTTGCACATGTTAAGGGAGTCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCATATCTCCTATATTCATGGCTGTATATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	GGAACAGGCGCGCGCTGGGATTTAAAAGCAGAAGGC
GTTTTAACTACTTATTATGAAATGTAAAT	CACGTACTTTAATCGGCATCAAACCACCTCGATTTC
GTTTTAACTACTTATTATGAAATCTAAAT	CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATATAAAT	TAACGAGCCAATTAAACCATCTTCTTCTAGTAAT
GTTTTAACTACTTATTATGAAATCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP028183.1\|AVS30565.1\|556185_556464_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP028183.1\|AVS30559.1\|548419_549235_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP028183.1\|AVS30570.1\|563645_564398_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP028183.1\|AVS30571.1\|564503_564947_+\|hypothetical-protein	unknown	unknown	unknown
CP028183.1\|AVS30557.1\|543614_544073_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
CP028183.1\|AVS30568.1\|561092_562097_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
CP028183.1\|AVS30567.1\|559545_560961_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP028183.1\|AVS30562.1\|552002_552872_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP028183.1\|AVS30566.1\|559030_559399_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
CP028183.1\|AVS30561.1\|550324_552013_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
CP028183.1\|AVS30558.1\|546868_548299_-\|capsule-biosynthesis-protein-CapA	unknown	unknown	gnl\|CDD\|225399
CP028183.1\|AVS30569.1\|562128_563445_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
CP028183.1\|AVS33045.1\|546390_546822_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
CP028183.1\|AVS30563.1\|552849_553632_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
CP028183.1\|AVS30572.1\|564992_566654_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
CP028183.1\|AVS30560.1\|549586_550309_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP028183.1\|AVS30564.1\|553699_555883_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP028183.1\|AVS30574.1\|568285_569026_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
CP028183.1\|AVS30573.1\|566909_568241_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
CP028183.1\|AVS30575.1\|569255_570731_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP028183.1\|AVS30565.1\|556185_556464_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
CP028183.1\|AVS30559.1\|548419_549235_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.75333e-50
CP028183.1\|AVS30570.1\|563645_564398_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.24308e-64
CP028183.1\|AVS30557.1\|543614_544073_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
CP028183.1\|AVS30568.1\|561092_562097_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.07552e-20
CP028183.1\|AVS30567.1\|559545_560961_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.83532e-79
CP028183.1\|AVS30562.1\|552002_552872_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
CP028183.1\|AVS30566.1\|559030_559399_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
CP028183.1\|AVS30561.1\|550324_552013_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.75294e-26
CP028183.1\|AVS30558.1\|546868_548299_-\|capsule-biosynthesis-protein-CapA	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.52915e-100
CP028183.1\|AVS30569.1\|562128_563445_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
CP028183.1\|AVS33045.1\|546390_546822_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
CP028183.1\|AVS30563.1\|552849_553632_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.37797e-23
CP028183.1\|AVS30572.1\|564992_566654_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.54266e-147
CP028183.1\|AVS30560.1\|549586_550309_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.75155e-33
CP028183.1\|AVS30564.1\|553699_555883_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.29289e-60
CP028183.1\|AVS30574.1\|568285_569026_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
CP028183.1\|AVS30573.1\|566909_568241_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	1.38609e-74

>CP028183.1|AVS30565.1|556185_556464_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>CP028183.1|AVS30564.1|553699_555883_+|CRISPR-associated-helicase/endonuclease-Cas3
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGGNAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFVNSKTILNEHAGVLTEEKKMELVEQVYSTEALSGSEFYNDLIDKLNYVKAFESYLMNKADVRMRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKIIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMR
>CP028183.1|AVS30563.1|552849_553632_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>CP028183.1|AVS30562.1|552002_552872_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>CP028183.1|AVS30561.1|550324_552013_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>CP028183.1|AVS30560.1|549586_550309_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIISKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALMSLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>CP028183.1|AVS30559.1|548419_549235_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRLKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>CP028183.1|AVS30558.1|546868_548299_-|capsule-biosynthesis-protein-CapA
MKRRTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKEIKSYPTEKNDSGIYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>CP028183.1|AVS33045.1|546390_546822_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>CP028183.1|AVS30557.1|543614_544073_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>CP028183.1|AVS30566.1|559030_559399_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>CP028183.1|AVS30567.1|559545_560961_+|MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>CP028183.1|AVS30568.1|561092_562097_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>CP028183.1|AVS30569.1|562128_563445_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>CP028183.1|AVS30570.1|563645_564398_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQLDKEKM
>CP028183.1|AVS30571.1|564503_564947_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNIFLENGIGTDSLLIVLKAFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>CP028183.1|AVS30572.1|564992_566654_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKSEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>CP028183.1|AVS30573.1|566909_568241_+|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALKEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>CP028183.1|AVS30574.1|568285_569026_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>CP028183.1|AVS30575.1|569255_570731_+|hypothetical-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Crispr_ID: CP028183_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028183_4

2782278-2783764

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
TTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

22 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of CP028183_4

>merge|CP028183|4|2782278-2783764|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAACCCCTGTTAGCGATGGGGGGAGAATATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTTTCAGTGACAACAACAGCACCGTCCATTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTTAGCAACTCTAGTTATCGAGTGATTTAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAAGTCGGGAACGGATCTTCCTTGTCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTTTTTTTCTTGGTGTAGGTGATTTCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTTTTTTTCTTGGTGTAGGTGATTTCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGTTAATGTCATTTTTCATCATCCTTTATGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCTTTGCTGAACGGACTAGACAGTCACCACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATTTATGTGAATTTAGTGATGAATGGCAGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAACCATTTGAATCCAACGACTAATATAGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGGTAACAGAAACGTTCCAGGAGAAAATGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGATGCCGCAGCATATATATTTAATTGAGCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGTTTGAGTGGGAGGAAGACGATTTACTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAATGGTGAATGCGTTGAAGAAGGAGGAACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACCTCAACGTTAGGGCTTTTTTTATGCAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACACAGCAAGCCCACTAGTTTCGGATTTTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATGAAAGAGCATTCAGACTTTGGAAAAACGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAGCTAATGCGGTTATCTTTCGTAAGGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTATACAGGTTAGGAAGTAAACTCCTTGTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTTAAAGTTGTCAACTTCTATTTTTTATATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAAAAACGTATCAAAAGGCACTGTCGCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCATTGTTTATCTTCTCCCAAATAAAATCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP028183|4|3|2782278-2783764|CRISPRCasFinder
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCAGTGACAACAACAGCACCGTCCATT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTAGCAACTCTAGTTATCGAGTGATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAGTCGGGAACGGATCTTCCTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTTTTTTTCTTGGTGTAGGTGATTTCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTTTTTTTCTTGGTGTAGGTGATTTCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTAATGTCATTTTTCATCATCCTTTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGCTGAACGGACTAGACAGTCACCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATGTGAATTTAGTGATGAATGGCAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAACCATTTGAATCCAACGACTAATATAGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGTAACAGAAACGTTCCAGGAGAAAATGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATGCCGCAGCATATATATTTAATTGAGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTGAGTGGGAGGAAGACGATTTACTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGGTGAATGCGTTGAAGAAGGAGGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACCTCAACGTTAGGGCTTTTTTTATGCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACACAGCAAGCCCACTAGTTTCGGATTTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGAAAGAGCATTCAGACTTTGGAAAAACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP028183|4|4|2782278-2783764|CRT
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCAGTGACAACAACAGCACCGTCCATT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTAGCAACTCTAGTTATCGAGTGATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAGTCGGGAACGGATCTTCCTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTTTTTTTCTTGGTGTAGGTGATTTCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTTTTTTTCTTGGTGTAGGTGATTTCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTAATGTCATTTTTCATCATCCTTTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGCTGAACGGACTAGACAGTCACCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATGTGAATTTAGTGATGAATGGCAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAACCATTTGAATCCAACGACTAATATAGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGTAACAGAAACGTTCCAGGAGAAAATGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATGCCGCAGCATATATATTTAATTGAGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTGAGTGGGAGGAAGACGATTTACTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGGTGAATGCGTTGAAGAAGGAGGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACCTCAACGTTAGGGCTTTTTTTATGCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACACAGCAAGCCCACTAGTTTCGGATTTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGAAAGAGCATTCAGACTTTGGAAAAACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP028183|4|3|2782339-2782509|PILER-CR
TTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTTCAGTGACAACAACAGCACCGTCC
ATTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTAGCAACTCTAGTTATCGAGTGATT
TAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAAGTCGGGAACGGATCTTCCTTGTCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTTTTTTTCTTGGTGTAGGTGATTTCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTTTTTTTCTTGGTGTAGGTGATTTCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTAATGTCATTTTTCATCATCCTTTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGCTGAACGGACTAGACAGTCACCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATGTGAATTTAGTGATGAATGGCAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAACCATTTGAATCCAACGACTAATATAGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGTAACAGAAACGTTCCAGGAGAAAATGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATGCCGCAGCATATATATTTAATTGAGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTGAGTGGGAGGAAGACGATTTACTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGGTGAATGCGTTGAAGAAGGAGGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACCTCAACGTTAGGGCTTTTTTTATGCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACACAGCAAGCCCACTAGTTTCGGATTTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGAAAGAGCATTCAGACTTTGGAAAAACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA


>CP028183|4|4|2782672-2783764|PILER-CR
	TTTTCAGTGACAACAACAGCACCGTCC
ATTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTAGCAACTCTAGTTATCGAGTGATT
TAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAAGTCGGGAACGGATCTTCCTTGTCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTTTTTTTCTTGGTGTAGGTGATTTCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTTTTTTTCTTGGTGTAGGTGATTTCGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTAATGTCATTTTTCATCATCCTTTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGCTGAACGGACTAGACAGTCACCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTTATGTGAATTTAGTGATGAATGGCAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAACCATTTGAATCCAACGACTAATATAGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGGTAACAGAAACGTTCCAGGAGAAAATGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATGCCGCAGCATATATATTTAATTGAGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTGAGTGGGAGGAAGACGATTTACTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGGTGAATGCGTTGAAGAAGGAGGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACCTCAACGTTAGGGCTTTTTTTATGCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACACAGCAAGCCCACTAGTTTCGGATTTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGAAAGAGCATTCAGACTTTGGAAAAACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGCTAATGCGGTTATCTTTCGTAAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATACAGGTTAGGAAGTAAACTCCTTGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTAAAGTTGTCAACTTCTATTTTTTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAAAAACGTATCAAAAGGCACTGTCGCGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATTGTTTATCTTCTCCCAAATAAAATCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028183.1\|AVS32748.1\|2781389_2781752_-\|hypothetical-protein	unknown	unknown	unknown
CP028183.1\|AVS32756.1\|2792867_2793305_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP028183.1\|AVS32739.1\|2763996_2764473_-\|DUF1641-domain-containing-protein	unknown	unknown	gnl\|CDD\|225283
CP028183.1\|AVS32743.1\|2770429_2771317_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP028183.1\|AVS32753.1\|2790278_2790767_-\|hypothetical-protein	unknown	unknown	unknown
CP028183.1\|AVS32746.1\|2779972_2780824_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
CP028183.1\|AVS32752.1\|2785749_2789754_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
CP028183.1\|AVS32745.1\|2778404_2779931_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
CP028183.1\|AVS32744.1\|2777107_2778136_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
CP028183.1\|AVS32747.1\|2780845_2781268_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
CP028183.1\|AVS32758.1\|2794251_2795049_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
CP028183.1\|AVS32750.1\|2784544_2784886_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP028183.1\|AVS32740.1\|2764472_2767460_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|225918
CP028183.1\|AVS32741.1\|2767957_2768800_+\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|224824
CP028183.1\|AVS32754.1\|2790776_2792162_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368093
CP028183.1\|AVS32749.1\|2783892_2784555_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
CP028183.1\|AVS32742.1\|2768847_2770329_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP028183.1\|AVS32755.1\|2792453_2792846_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP028183.1\|AVS32757.1\|2793499_2794246_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
CP028183.1\|AVS32751.1\|2784882_2785749_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
CP028183.1\|AVS32756.1\|2792867_2793305_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
CP028183.1\|AVS32739.1\|2763996_2764473_-\|DUF1641-domain-containing-protein	gnl\|CDD\|225283	COG2427, COG2427, Uncharacterized conserved protein [Function unknown].	1.26483e-27
CP028183.1\|AVS32743.1\|2770429_2771317_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.88589e-15
CP028183.1\|AVS32746.1\|2779972_2780824_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	1.21419e-171
CP028183.1\|AVS32752.1\|2785749_2789754_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
CP028183.1\|AVS32745.1\|2778404_2779931_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	2.3456e-69
CP028183.1\|AVS32744.1\|2777107_2778136_-\|ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.7266e-115
CP028183.1\|AVS32747.1\|2780845_2781268_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.08766e-41
CP028183.1\|AVS32758.1\|2794251_2795049_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	4.19414e-53
CP028183.1\|AVS32750.1\|2784544_2784886_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.15214e-45
CP028183.1\|AVS32740.1\|2764472_2767460_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|225918	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only].	0
CP028183.1\|AVS32741.1\|2767957_2768800_+\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|224824	COG1912, COG1912, Uncharacterized conserved protein [Function unknown].	2.32894e-126
CP028183.1\|AVS32754.1\|2790776_2792162_-\|hypothetical-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	5.37469e-18
CP028183.1\|AVS32749.1\|2783892_2784555_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.23264e-113
CP028183.1\|AVS32742.1\|2768847_2770329_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.38978e-108
CP028183.1\|AVS32755.1\|2792453_2792846_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	6.78953e-84
CP028183.1\|AVS32757.1\|2793499_2794246_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.93371e-127
CP028183.1\|AVS32751.1\|2784882_2785749_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.96005e-130

>CP028183.1|AVS32748.1|2781389_2781752_-|hypothetical-protein
MKKTSIIFTFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFQIQETSPAQIDPKYVQKIILLNK
>CP028183.1|AVS32747.1|2780845_2781268_-|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSELNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKQVRDLLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
>CP028183.1|AVS32746.1|2779972_2780824_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKAGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQTANLAILRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGLNQGESQFFSHADPEMVKWMASRKLNV
>CP028183.1|AVS32745.1|2778404_2779931_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETDYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIDSNQSLAAIGTVAENKEQEVIWSAPYNTENANKIGTLENYSGRNLEISWEAKTEKGLWYFIRENNKDIGWVNSNALKINYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALQVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYNNEKLEIVTRAKAGNTLWYQFKVGGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDSQNSLGWIKAIDINS
>CP028183.1|AVS32744.1|2777107_2778136_-|ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETNHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPYLS
>CP028183.1|AVS32743.1|2770429_2771317_-|TetR/AcrR-family-transcriptional-regulator
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYSVLHQRLEYTMAQDGAKKDNFTECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRLKNMEWVKYQLLEVYGEETKPYINDITMLLSGMAAMYVFASGSKNVNTGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLREALEELNVGIENADIADSDKWQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL
>CP028183.1|AVS32742.1|2768847_2770329_-|MFS-transporter
MNSTAVERPVDVNGKSYSRSLLVVTMIIGAFVAILNQTLLATALPMIMDDLHITAATGQWLTTAFLLTNGIMIPITALLIEKISSKTLFITAMTVFTIGTIIASVAGSFPILLTGRIVQAAGAGIMMPLLQTIFLLIFPREKRGAAMGLMGLVIAFAPAIGPTLSGWIVDSYDWRVLFLILIPIAVIDIILAFFGMKKVVKLTDTKIDFLSIVMSSIGFGSLLYGFSSAGNDGWGDATVITMLIIGVVVIGLFVWRQLVIENPMLELHVFKYPVFSLSVVLGSIVTMAMIGAEIVLPLYIQTIRGESALQSGLLLLPGAIIMGIMSPITGIIFDKIGAKWLTITGVTILTIGTIPFMFLTMDTPLWYIVVFYAVRFFGISMAMMPVSTAGMNALPNHLINHGSAVNNTIRQIAGSIGTAVLITVLTNVTKDNMPGKALMATDPASFAQKAQDASLDGMRAAFMVAAIFAAIGMILSLFLKTKKQEPIVKEYTK
>CP028183.1|AVS32741.1|2767957_2768800_+|DNA-directed-RNA-polymerase-subunit-delta
MTKQLLVLQSDFGISDGAVSAMYGVINSVSVDLQIYDLTHQIPQFNIWEASYRLLQTVTYWPENTIFVSIVDPGVGSKRRSVAVLTEDGHYIITPDNGTLTHIAHYGTIKEVRLIDEEKNRLPKSGASHTFHGRDIFAYTAARLAAGVINFEDIGPAAAPESIVSLSLSDSYLEGEQAFGTIDIIDRPFGNLWTNIRRTDFLELGANYGHSIEVLIKHHDRIVYKNFVTYSRSFADLRIGEPLIYVNSLDNLGLGINQGSFVDAYSVGTGTSWKVTLKKA
>CP028183.1|AVS32740.1|2764472_2767460_-|formate-dehydrogenase-subunit-alpha
MGAKVSVQINGVARDVVEGTRILDYLNAEGIQHPHICYSEQIGPIQSCDTCMCEVDGELVRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFMTGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEVWTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSERRITTPLIREGNEFVPASWEDAIHLVATKLREIQAKYGNDSIGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQAPASDGLTRTVGIGADSGTVEDIETAGLVIIVGASPADGHPVLASRIKRAQKTRGQKLIVSDLRKHEMAERSDLFIHPKQGTDFVWLTAVAKYMIDQGWHDEVFMENRISNVRDYLAFLEPFTLDYAEKETGLSAETLKLVAQMVHEADGTAVCWGMGVTQNIAGSHTSSAIANLLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGVSISPEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILASLDFFVVQDVFLSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVARACGRTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLLWPVSADGKDMPLLYEERFNFPDGKAQFSTLPYIAPITFPEEYNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVEVSHELAKERDIESGSLVRLSSPYGRIKLRAVVTERMKGYEVYVPMHSVSSETAVNLLTSSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVARKWSREDYQPISKVNCACGGNCGCGGKGRNH
>CP028183.1|AVS32739.1|2763996_2764473_-|DUF1641-domain-containing-protein
MAEPISTIRDTKKTPEELEKERLEQMKADIAEQDSGFIEILETVKLLQESGALEALNSAIKARGDITKTFLNEWRKEPMTNAINNMMISSKLLTDTKPEQTEEMIANLKNAAKKAEESAKNDEIMGMLAMMKALKDPDINRALRYGVTFLKEVGQTLK
>CP028183.1|AVS32749.1|2783892_2784555_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDEPITIEDSTIFVIEDVRVFANVAKLFYQYDETEELKVFNTKQHPLKSSELMLVTDILGHDINSAATLKLIYTDLEQQLNEKPKVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDNVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>CP028183.1|AVS32750.1|2784544_2784886_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSVGNSDARLIFLGDAIDEF
>CP028183.1|AVS32751.1|2784882_2785749_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQHEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLSKQLGWDSELKSEVWTEIISQKILNQSTFLSMLNYDEKADSLIKLHETLEIFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHSNQFNDFNFASDIMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFNKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>CP028183.1|AVS32752.1|2785749_2789754_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKISGDSEKKQIKKNFWGVRLFEKGETAAKRRMSRTARRRIERRRNRISYLQEIFAIQMNEVDDNFFNRLKESFYAESDKKYNRHPFFGTVEEEVAYYKDFPTIYHLRKELIDSQKKADLRLVYLALAHIIKYRGHFLIEGALDTKNTSIDEMFKQFLQIYNQVFANDIEEASLKKTEKNQEVAQILAEKFTRKDKLDKILSLYPGEKTTGVFAQFVNIIVGSTGKFKKHFNLHEKKDINCAEDTYDTDLESLLAIIGDEFAEVFVAAKNAYNAVVLSNIITVTDSTTRAKLSASLIERFENHKEDLKKMKRFVRTYLPEKYDEIFDDTEKHGYAGYISGKTKQADFYKYMKATLEKIEGADYFIAKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREDYEKIKSLVTFRIPYFVGPLAKGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKVRYIDDQGKTNYFSGQEKQQIFNDLFKQKRKVKKKDLELFLRNINQIESPTIEGLEDSFNASYATYHDLLKVGMKQEILDNPLNTEMLEDIVKILTVFEDKRMIKEQLQQFSDVLDGTVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTADKDLQSIVADLAGSPAIKKGILQSLKIVDELVSVMGYPPQTIVVEMARENQTTNKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSVDNLVLTSSAGNREKGDNVPPLEIVQKRKIFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNYKTDGNKDTMETVRIVTLKSALVSQFRKQFQFYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKDRIIDENGEILWDKRYLETVKKVLGYRQMNIVKKTEIQKGEFSNVTPNPKGKSNKLIPRKKDWDPIKYGGFDGSKMAYAIIIEYEKQKRKVRIEKKLIQINIMEREAFEKDEKTFLEEKGYHQPKVLIKVPKYTLYECENGRRRMLGSANEAHKGNQMLLPNHLMALLYHAEKYEAIDGESLAYIEVHRALFDELLAYISEFARKYTLSNDRLDEINMLYERNKDGDVKSIAESFVSLKKFNAFGVHQDFSFFGTKIERKRDRKLNELLNSTIIYQSITGLYESRKRLDN
>CP028183.1|AVS32753.1|2790278_2790767_-|hypothetical-protein
MKEDILAVYKKFEINNLNMFFDDLIEYVNKYYTVFSKYISLDYLDAITRLDSTSLILGHSDDNFEIAIPFYTNKVIEGLNEEELSNQVSSLIWDLSAYMTEELCPSCNDSNLRLTTMVSREDTLVKFCDECLYTGIRNERVEIEEDLVPAPKKKVEEYLRGK
>CP028183.1|AVS32754.1|2790776_2792162_-|hypothetical-protein
MSRIDIAELNEFLHNLKSSNDEARRMLGKMQEVTNAYATDTSLKGKAIETSQAYFDQTYSVICKSLIEALDESEERLERYIREFGEQVDSSYNARIDAEMLQEAIFRLAEIKRKQEDLLQRMSASTGTLHEGEQQRLRTQFTDALEQEKILERYIAFEQSHGRFFDSFSELVYCAGKAVRELAANVTFNSQTGTYDIGKLDTNKFHALQKFLPKKKKYNFNEYEIRWNGAAHILLRGDVVDAEATAAYNDAVAKGELPKVSNQATESAEEINAVVNALKKGQDPITGQEISKAQSFGIAIGLVYMYVGGKYKGRKIKLPKNALENLEKQQAFKDKEVGGADIPNPNVGIVQSRVNLAENPTRFSPSKNAGMKHVRNRHYNPSKNAGQFTIPESDLKNILQSKQVVNTPVKQIESGDFERVIDIGKNMGTVKPSLGGQTTTWIKVITDKAGNIITTYPVPKP
>CP028183.1|AVS32755.1|2792453_2792846_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVRGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>CP028183.1|AVS32756.1|2792867_2793305_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>CP028183.1|AVS32757.1|2793499_2794246_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDILKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>CP028183.1|AVS32758.1|2794251_2795049_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTFLLISLAVLSGLLFWLRS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP028183_2	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	CP028183.1	2424829-2424862	0	1.0
CP028183_2	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	CP028183.1	2601109-2601142	0	1.0
CP028183_2	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	CP028183.1	2424828-2424862	0	1.0
CP028183_2	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	CP028183.1	2601108-2601142	0	1.0
CP028183_3	3.12\|557406\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557406-557441	36	CP028183.1	2602803-2602838	0	1.0
CP028183_3	3.16\|557663\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557663-557696	34	CP028183.1	2602196-2602229	0	1.0
CP028183_4	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	CP028183.1	2598007-2598037	0	1.0
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	CP028183.1	2422923-2422952	0	1.0
CP028183_2	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	CP028183.1	2600573-2600607	1	0.971
CP028183_2	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	CP028183.1	2600573-2600608	1	0.972
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	CP028183.1	1305185-1305214	1	0.967
CP028183_4	4.12\|2783039\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783039-2783068	30	CP028183.1	2428219-2428248	1	0.967
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	CP028183.1	1305188-1305214	1	0.963
CP028183_2	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	CP028183.1	1323797-1323830	2	0.941
CP028183_2	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	CP028183.1	1323797-1323831	2	0.943
CP028183_4	4.22\|2783699\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783699-2783728	30	CP028183.1	1320773-1320802	2	0.933

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to position: 2424829-2424862, mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to position: 2601109-2601142, mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

3. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to position: 2424828-2424862, mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to position: 2601108-2601142, mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

5. spacer 3.12|557406|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to position: 2602803-2602838, mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 3.16|557663|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to position: 2602196-2602229, mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to position: 2598007-2598037, mismatch: 0, identity: 1.0

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ttgttaatgtcatttttcatcatcctttatg	Protospacer
*******************************

8. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to position: 2422923-2422952, mismatch: 0, identity: 1.0

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcaacgttagggctttttttatgcaa	Protospacer
******************************

9. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to position: 2600573-2600607, mismatch: 1, identity: 0.971

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

10. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to position: 2600573-2600608, mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

11. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to position: 1305185-1305214, mismatch: 1, identity: 0.967

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagtgacaacaacagcaccatccatt	Protospacer
***********************.******

12. spacer 4.12|2783039|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to position: 2428219-2428248, mismatch: 1, identity: 0.967

gatgccgcagcatatatatttaattgagct	CRISPR spacer
gatgccgcagcgtatatatttaattgagct	Protospacer
***********.******************

13. spacer 4.23|2782378|27|CP028183|PILER-CR matches to position: 1305188-1305214, mismatch: 1, identity: 0.963

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagtgacaacaacagcaccatcc	Protospacer
***********************.***

14. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to position: 1323797-1323830, mismatch: 2, identity: 0.941

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
***.************************ *****

15. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to position: 1323797-1323831, mismatch: 2, identity: 0.943

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
****.************************ *****

16. spacer 4.22|2783699|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to position: 1320773-1320802, mismatch: 2, identity: 0.933

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattatttattttctcccaaataaaatca	Protospacer
*****.*****.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028183_2	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	MT500540	Listeria phage LP-HM00113468, complete genome	26210-26243	0	1.0
CP028183_2	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	MT500540	Listeria phage LP-HM00113468, complete genome	26209-26243	0	1.0
CP028183_3	3.12\|557406\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557406-557441	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
CP028183_3	3.12\|557406\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557406-557441	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
CP028183_3	3.16\|557663\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557663-557696	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
CP028183_3	3.16\|557663\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557663-557696	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
CP028183_3	3.29\|558507\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558507-558542	36	KP399678	Listeria phage vB_LmoS_293, complete genome	6980-7015	0	1.0
CP028183_4	4.10\|2782907\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782907-2782936	30	AJ312240	Bacteriophage PSA complete genome	9843-9872	0	1.0
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	NC_042048	Listeria phage LMTA-34, complete genome	74603-74632	0	1.0
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	NC_024360	Listeria phage LMSP-25, complete genome	74603-74632	0	1.0
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	2528-2557	0	1.0
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	HI504184	Sequence 26 from Patent EP2147092	2528-2557	0	1.0
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	AJ417489	bacteriophage U153 int gene for U153 integrase	2528-2557	0	1.0
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	4400-4429	0	1.0
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	KJ094022	Listeria phage LP-030-3, complete genome	30296-30325	0	1.0
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	AJ312240	Bacteriophage PSA complete genome	18523-18552	0	1.0
CP028183_4	4.22\|2783699\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783699-2783728	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	225302-225331	0	1.0
CP028183_4	4.22\|2783699\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783699-2783728	30	KJ094023	Listeria phage LP-101, complete genome	15775-15804	0	1.0
CP028183_2	2.2\|541213\|34\|CP028183\|PILER-CR,CRT	541213-541246	34	DQ003642	Listeria phage A006, complete genome	5993-6026	1	0.971
CP028183_2	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	NC_003216	Listeria phage A118, complete genome	20259-20292	1	0.971
CP028183_2	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	AJ242593	Bacteriophage A118 complete genome	20259-20292	1	0.971
CP028183_2	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	X85008	Bacteriophage A118 hol118 and ply118 genes	507-540	1	0.971
CP028183_2	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	DQ003642	Listeria phage A006, complete genome	19079-19113	1	0.971
CP028183_2	2.7\|541212\|35\|CP028183\|CRISPRCasFinder	541212-541246	35	DQ003642	Listeria phage A006, complete genome	5993-6027	1	0.971
CP028183_2	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	NC_003216	Listeria phage A118, complete genome	20259-20293	1	0.971
CP028183_2	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	AJ242593	Bacteriophage A118 complete genome	20259-20293	1	0.971
CP028183_2	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	X85008	Bacteriophage A118 hol118 and ply118 genes	507-541	1	0.971
CP028183_2	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	DQ003642	Listeria phage A006, complete genome	19078-19113	1	0.972
CP028183_3	3.6\|557016\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557016-557051	36	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	60125-60160	1	0.972
CP028183_3	3.6\|557016\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557016-557051	36	NC_009812	Listeria phage B025, complete genome	27503-27538	1	0.972
CP028183_3	3.29\|558507\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558507-558542	36	NC_003216	Listeria phage A118, complete genome	6982-7017	1	0.972
CP028183_3	3.29\|558507\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558507-558542	36	AJ242593	Bacteriophage A118 complete genome	6982-7017	1	0.972
CP028183_3	3.29\|558507\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558507-558542	36	MH341452	Listeria phage PSU-VKH-LP040, complete genome	6993-7028	1	0.972
CP028183_3	3.31\|558635\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558635-558670	36	NC_021539	Listeria phage LP-030-2, complete genome	14044-14079	1	0.972
CP028183_3	3.31\|558635\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558635-558670	36	AJ312240	Bacteriophage PSA complete genome	14022-14057	1	0.972
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	KY705255	Streptococcus phage P0095, complete genome	33666-33702	1	0.973
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	KY705251	Streptococcus phage P0091, complete genome	32778-32814	1	0.973
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	KX879643	Streptococcus phage CHPC1151, complete genome	31697-31733	1	0.973
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	MK202161	Streptococcus phage CHPC1282, complete genome	32484-32520	1	0.973
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	KY705252	Streptococcus phage P0092, complete genome	31845-31881	1	0.973
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	MH937506	Streptococcus phage CHPC1148, complete genome	35552-35588	1	0.973
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	KY705253	Streptococcus phage P0093, complete genome	32631-32667	1	0.973
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	KY705254	Streptococcus phage P0094, complete genome	31034-31070	1	0.973
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	209277-209306	1	0.967
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	NC_009812	Listeria phage B025, complete genome	196-225	1	0.967
CP028183_4	4.12\|2783039\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783039-2783068	30	DQ003642	Listeria phage A006, complete genome	15360-15389	1	0.967
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	4442-4471	1	0.967
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	2486-2515	1	0.967
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	HI504184	Sequence 26 from Patent EP2147092	2486-2515	1	0.967
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	AJ417489	bacteriophage U153 int gene for U153 integrase	2486-2515	1	0.967
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	229925-229954	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	NC_025440	Listeria phage WIL-1, complete genome	106789-106818	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	NC_047872	Listeria phage LMTA-94, complete genome	72338-72367	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	KJ591605	Listeria phage LMTA-57, complete genome	83087-83116	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	KJ668715	Listeria phage LMTA-34, partial genome	59201-59230	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	MN172529	Listeria phage LP-039, complete genome	59048-59077	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	MT178766	Listeria virus P100plus, complete genome	26020-26049	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	MT178767	Listeria virus P200, complete genome	26020-26049	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	DQ004855	Listeria bacteriophage P100, complete genome	26019-26048	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	KJ094033	Listeria phage LP-048, complete genome	61505-61534	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	MN128594	Listeria phage LP-066, complete genome	60544-60573	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	KJ094030	Listeria phage LP-083-2, complete genome	65710-65739	1	0.967
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	KJ094031	Listeria phage LP-124, complete genome	27825-27854	1	0.967
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NC_021539	Listeria phage LP-030-2, complete genome	18331-18360	1	0.967
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	209280-209306	1	0.963
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	NC_009812	Listeria phage B025, complete genome	199-225	1	0.963
CP028183_2	2.2\|541213\|34\|CP028183\|PILER-CR,CRT	541213-541246	34	MH341451	Listeria phage PSU-VKH-LP019, complete genome	5984-6017	2	0.941
CP028183_2	2.2\|541213\|34\|CP028183\|PILER-CR,CRT	541213-541246	34	KP399677	Listeria phage vB_LmoS_188, complete genome	5993-6026	2	0.941
CP028183_2	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	NC_003216	Listeria phage A118, complete genome	20794-20828	2	0.943
CP028183_2	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	AJ242593	Bacteriophage A118 complete genome	20794-20828	2	0.943
CP028183_2	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	X85008	Bacteriophage A118 hol118 and ply118 genes	1042-1076	2	0.943
CP028183_2	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	KJ094023	Listeria phage LP-101, complete genome	19818-19852	2	0.943
CP028183_2	2.7\|541212\|35\|CP028183\|CRISPRCasFinder	541212-541246	35	MH341451	Listeria phage PSU-VKH-LP019, complete genome	5984-6018	2	0.943
CP028183_2	2.7\|541212\|35\|CP028183\|CRISPRCasFinder	541212-541246	35	KP399677	Listeria phage vB_LmoS_188, complete genome	5993-6027	2	0.943
CP028183_2	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	NC_003216	Listeria phage A118, complete genome	20793-20828	2	0.944
CP028183_2	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	AJ242593	Bacteriophage A118 complete genome	20793-20828	2	0.944
CP028183_2	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	X85008	Bacteriophage A118 hol118 and ply118 genes	1041-1076	2	0.944
CP028183_2	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	KJ094023	Listeria phage LP-101, complete genome	19817-19852	2	0.944
CP028183_3	3.6\|557016\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557016-557051	36	KJ094023	Listeria phage LP-101, complete genome	27001-27036	2	0.944
CP028183_3	3.11\|557341\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557341-557376	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	26132-26167	2	0.944
CP028183_3	3.17\|557726\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557726-557761	36	KJ094022	Listeria phage LP-030-3, complete genome	38302-38337	2	0.944
CP028183_3	3.19\|557856\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557856-557891	36	KP399678	Listeria phage vB_LmoS_293, complete genome	1049-1084	2	0.944
CP028183_3	3.29\|558507\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558507-558542	36	DQ003637	Listeria phage A500, complete genome	6959-6994	2	0.944
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	MN689509	Lactococcus phage CHPC1175, complete genome	29544-29580	2	0.946
CP028183_3	3.32\|558700\|37\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558700-558736	37	MK448735	Streptococcus phage Javan349, complete genome	11483-11519	2	0.946
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	NC_021539	Listeria phage LP-030-2, complete genome	18372-18401	2	0.933
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	KJ094022	Listeria phage LP-030-3, complete genome	30338-30367	2	0.933
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	MT500540	Listeria phage LP-HM00113468, complete genome	24311-24340	2	0.933
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	KP399678	Listeria phage vB_LmoS_293, complete genome	21903-21932	2	0.933
CP028183_4	4.16\|2783303\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783303-2783332	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213868-213897	2	0.933
CP028183_4	4.16\|2783303\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783303-2783332	30	KJ094023	Listeria phage LP-101, complete genome	4341-4370	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	80589-80618	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	KJ535721	Listeria phage List-36, complete genome	69453-69482	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	MT438761	Listeria virus P61, complete genome	70795-70824	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	60394-60423	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	DQ003638	Listeria phage A511, complete genome	59585-59614	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	KJ591604	Listeria phage LMTA-148, complete genome	66986-67015	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	NC_041862	Listeria phage LP-064, complete genome	69005-69034	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	JX126918	Listeria phage LP-125, complete genome	69007-69036	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	58894-58923	2	0.933
CP028183_4	4.19\|2783501\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783501-2783530	30	FJ147490	Listeria phage 20422-1 unknown genes	607-636	2	0.933
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	KJ094023	Listeria phage LP-101, complete genome	191-217	2	0.926
CP028183_3	3.1\|556691\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	556691-556726	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	228347-228382	3	0.917
CP028183_3	3.18\|557791\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557791-557826	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	KJ094023	Listeria phage LP-101, complete genome	188-217	3	0.9
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	AJ312240	Bacteriophage PSA complete genome	18565-18594	3	0.9
CP028183_4	4.22\|2783699\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783699-2783728	30	MT500540	Listeria phage LP-HM00113468, complete genome	29150-29179	3	0.9
CP028183_4	4.16\|2783303\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783303-2783332	30	MT500540	Listeria phage LP-HM00113468, complete genome	284-313	4	0.867
CP028183_3	3.18\|557791\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557791-557826	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
CP028183_4	4.9\|2782841\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782841-2782870	30	NC_003216	Listeria phage A118, complete genome	19234-19263	5	0.833
CP028183_4	4.9\|2782841\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782841-2782870	30	AJ242593	Bacteriophage A118 complete genome	19234-19263	5	0.833
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	NC_003216	Listeria phage A118, complete genome	21913-21942	5	0.833
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	AJ242593	Bacteriophage A118 complete genome	21913-21942	5	0.833
CP028183_4	4.17\|2783369\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783369-2783398	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	14832-14861	5	0.833
CP028183_4	4.17\|2783369\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783369-2783398	30	DQ003641	Listeria phage P35, complete genome	30954-30983	5	0.833
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NZ_CP026684	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence	95843-95872	5	0.833
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	MH823906	Citrobacter phage Maroon, complete genome	170660-170686	5	0.815
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	LC589952	Enterobacter phage vB_EkoM5VN DNA, complete genome	40509-40535	5	0.815
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	KX431560	Cronobacter phage vB_CsaM_leN, complete genome	171113-171139	5	0.815
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	KT381880	Citrobacter phage Margaery, complete genome	169993-170019	5	0.815
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	NC_048645	Cronobacter phage vB_CsaM_leB, complete genome	169504-169530	5	0.815
CP028183_3	3.15\|557600\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557600-557633	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
CP028183_3	3.29\|558507\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558507-558542	36	KJ094022	Listeria phage LP-030-3, complete genome	15373-15408	6	0.833
CP028183_3	3.33\|558766\|35\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558766-558800	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	MH823906	Citrobacter phage Maroon, complete genome	170657-170686	6	0.8
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	LC589952	Enterobacter phage vB_EkoM5VN DNA, complete genome	40506-40535	6	0.8
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	KX431560	Cronobacter phage vB_CsaM_leN, complete genome	171110-171139	6	0.8
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	KT381880	Citrobacter phage Margaery, complete genome	169990-170019	6	0.8
CP028183_4	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	NC_048645	Cronobacter phage vB_CsaM_leB, complete genome	169501-169530	6	0.8
CP028183_4	4.10\|2782907\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782907-2782936	30	CP021182	Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence	192736-192765	6	0.8
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	X85009	Bacteriophage A500 hol500 and ply500 genes	2291-2320	6	0.8
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	DQ003637	Listeria phage A500, complete genome	21938-21967	6	0.8
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	KT207918	Bacillus phage Eyuki, complete genome	116456-116485	6	0.8
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NC_031054	Bacillus phage DirtyBetty, complete genome	116445-116474	6	0.8
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	MH538193	Bacillus phage Saddex, complete genome	117316-117345	6	0.8
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	MF288919	Bacillus phage AaronPhadgers, complete genome	115968-115997	6	0.8
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	MG763894	Bacillus phage HonestAbe, complete genome	116215-116244	6	0.8
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NC_031116	Bacillus phage Zuko, complete genome	117017-117046	6	0.8
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	44141-44170	6	0.8
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	NZ_CP029570	Acinetobacter baumannii strain DA33098 plasmid pDA33098-108, complete sequence	60796-60825	7	0.767
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	NZ_CP027122	Acinetobacter baumannii strain AR_0056 plasmid unnamed1, complete sequence	50797-50826	7	0.767
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	NZ_CP027608	Acinetobacter baumannii strain AR_0102 plasmid unnamed1, complete sequence	44202-44231	7	0.767
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	NZ_CP026705	Acinetobacter baumannii strain AR_0056 plasmid tig00000058_pilon, complete sequence	30996-31025	7	0.767
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	NZ_CP035046	Acinetobacter baumannii strain ABUH793 plasmid p107.0Kbp, complete sequence	45158-45187	7	0.767
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	NZ_CP031445	Acinetobacter baumannii strain MDR-UNC plasmid unnamed1, complete sequence	66833-66862	7	0.767
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	NZ_CP040426	Acinetobacter baumannii strain PB364 plasmid pPB364_1, complete sequence	15361-15390	7	0.767
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	MK504446	Lactobacillus phage SAC12B, complete genome	116668-116697	7	0.767
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NC_021559	Prochlorococcus phage P-SSM3 genomic sequence	94742-94771	7	0.767
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NC_021559	Prochlorococcus phage P-SSM3 genomic sequence	94742-94771	7	0.767
CP028183_4	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	NZ_CP012385	Enterococcus durans strain KLDS 6.0930 plasmid unnamed 1, complete sequence	30800-30830	7	0.774
CP028183_4	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	NZ_CP012367	Enterococcus durans strain KLDS 6.0933 plasmid unnamed 1, complete sequence	67648-67678	7	0.774
CP028183_4	4.9\|2782841\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782841-2782870	30	NC_019274	Psychrobacter sp. DAB_AL62B plasmid pP62BP1, complete sequence	30251-30280	7	0.767
CP028183_4	4.9\|2782841\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782841-2782870	30	NZ_AP018257	Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome	212124-212153	7	0.767
CP028183_4	4.9\|2782841\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782841-2782870	30	MT254578	Bacillus phage Izhevsk, complete genome	9172-9201	7	0.767
CP028183_4	4.17\|2783369\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783369-2783398	30	NZ_MH113855	Vibrio alginolyticus strain Vb1796 plasmid pVb1796, complete sequence	138833-138862	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	KX961629	Bacillus phage BJ4, complete genome	115259-115288	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NC_031070	Bacillus phage Nemo, complete genome	116990-117019	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	MF288920	Bacillus phage Zainny, complete genome	116438-116467	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	KJ489399	Bacillus phage Hakuna, complete genome	114490-114519	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NC_031027	Bacillus phage SageFayge, complete genome	115953-115982	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	KX349902	Bacillus phage Kida, complete genome	116180-116209	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	KX156152	Bacillus phage Smudge, complete genome	116059-116088	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	KJ489401	Bacillus phage Megatron, complete genome	115838-115867	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	MN038179	Bacillus phage ALPS, complete genome	116242-116271	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	MH638311	Bacillus phage OmnioDeoPrimus, complete genome	115905-115934	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	MF288918	Bacillus phage Bubs, complete genome	117020-117049	7	0.767
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	KX961632	Bacillus phage SBP8a, complete genome	115649-115678	7	0.767
CP028183_4	4.22\|2783699\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783699-2783728	30	MG592459	Vibrio phage 1.084.O._10N.261.49.F5, partial genome	30611-30640	7	0.767
CP028183_4	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	MN694268	Marine virus AFVG_250M110, complete genome	12975-13001	7	0.741
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	795158-795187	8	0.733
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NC_015156	Vibrio nigripulchritudo plasmid VIBNI_pA, complete genome	135244-135273	8	0.733
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NC_015156	Vibrio nigripulchritudo plasmid VIBNI_pA, complete genome	135244-135273	8	0.733
CP028183_4	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	155373-155403	8	0.742
CP028183_4	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	AP013449	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S35-C82	13642-13672	8	0.742
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NZ_CP023393	Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence	30092-30121	8	0.733
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NZ_CP016726	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence	53675-53704	8	0.733
CP028183_2	2.7\|541212\|35\|CP028183\|CRISPRCasFinder	541212-541246	35	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	1102881-1102915	9	0.743
CP028183_3	3.15\|557600\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557600-557633	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
CP028183_3	3.20\|557921\|35\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557921-557955	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
CP028183_3	3.33\|558766\|35\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558766-558800	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
CP028183_3	3.33\|558766\|35\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558766-558800	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
CP028183_3	3.33\|558766\|35\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558766-558800	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
CP028183_3	3.33\|558766\|35\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558766-558800	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
CP028183_3	3.33\|558766\|35\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558766-558800	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
CP028183_3	3.33\|558766\|35\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558766-558800	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
CP028183_4	4.4\|2782510\|30\|CP028183\|CRISPRCasFinder,CRT	2782510-2782539	30	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	281290-281319	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_KX426232	Acinetobacter lwoffii strain VS15 plasmid pALWVS1.1, complete sequence	22389-22418	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_AP019742	Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA2, complete sequence	70745-70774	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_CP021429	Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence	74538-74567	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_CP026416	Acinetobacter sp. ACNIH2 plasmid pACI-3569, complete sequence	109524-109553	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_CP030755	Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence	72832-72861	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_CP026426	Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence	105891-105920	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_CP032102	Acinetobacter lwoffii strain EK30A plasmid pALWEK1.1, complete sequence	23402-23431	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_CP015616	Acinetobacter schindleri strain ACE plasmid p1AsACE, complete sequence	85394-85423	9	0.7
CP028183_4	4.5\|2782576\|30\|CP028183\|CRISPRCasFinder,CRT	2782576-2782605	30	NZ_CP051209	Acinetobacter sp. NEB149 plasmid pMsp179, complete sequence	83988-84017	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_KX426232	Acinetobacter lwoffii strain VS15 plasmid pALWVS1.1, complete sequence	22389-22418	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_AP019742	Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA2, complete sequence	70745-70774	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_CP021429	Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence	74538-74567	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_CP026416	Acinetobacter sp. ACNIH2 plasmid pACI-3569, complete sequence	109524-109553	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_CP030755	Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence	72832-72861	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_CP026426	Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence	105891-105920	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_CP032102	Acinetobacter lwoffii strain EK30A plasmid pALWEK1.1, complete sequence	23402-23431	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_CP015616	Acinetobacter schindleri strain ACE plasmid p1AsACE, complete sequence	85394-85423	9	0.7
CP028183_4	4.6\|2782642\|30\|CP028183\|CRISPRCasFinder,CRT	2782642-2782671	30	NZ_CP051209	Acinetobacter sp. NEB149 plasmid pMsp179, complete sequence	83988-84017	9	0.7
CP028183_4	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	129665-129695	9	0.71
CP028183_4	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	HM144387	Bacillus phage W.Ph., complete genome	65600-65630	9	0.71
CP028183_4	4.14\|2783171\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783171-2783200	30	NZ_CP034542	Brevibacillus sp. SCSIO 07484 plasmid unnamed, complete sequence	14311-14340	9	0.7
CP028183_4	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	JF270478	Psychrobacter phage Psymv2, complete genome	10914-10943	9	0.7
CP028183_4	4.20\|2783567\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783567-2783596	30	NZ_CP034167	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-3, complete sequence	117743-117772	9	0.7
CP028183_2	2.2\|541213\|34\|CP028183\|PILER-CR,CRT	541213-541246	34	MK044828	Streptococcus phage 33888, complete genome	5436-5469	10	0.706
CP028183_3	3.30\|558572\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	558572-558605	34	NZ_CP034816	Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence	26153-26186	11	0.676

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

3. spacer 3.12|557406|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

4. spacer 3.12|557406|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

5. spacer 3.16|557663|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

6. spacer 3.16|557663|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 3.29|558507|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaaccacctcgatttc	Protospacer
************************************

8. spacer 4.10|2782907|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 0, identity: 1.0

caaccatttgaatccaacgactaatatagc	CRISPR spacer
caaccatttgaatccaacgactaatatagc	Protospacer
******************************

9. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatacaggttaggaagtaaactccttgta	Protospacer
******************************

10. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatacaggttaggaagtaaactccttgta	Protospacer
******************************

11. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

12. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

13. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

14. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

15. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

16. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 0, identity: 1.0

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cttaaagttgtcaacttctattttttatat	Protospacer
******************************

17. spacer 4.22|2783699|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttatcttctcccaaataaaatca	Protospacer
******************************

18. spacer 4.22|2783699|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttatcttctcccaaataaaatca	Protospacer
******************************

19. spacer 2.2|541213|34|CP028183|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ctgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
***************************.******

20. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

21. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

22. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

23. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcggggatggggaaaacg	Protospacer
**********************************

24. spacer 2.7|541212|35|CP028183|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tctgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
****************************.******

25. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

26. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

27. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

28. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcggggatggggaaaacg	Protospacer
***********************************

29. spacer 3.6|557016|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

30. spacer 3.6|557016|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgatttttcgtagcccaattgctaaa	Protospacer
************.***********************

31. spacer 3.29|558507|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

32. spacer 3.29|558507|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctcgatttc	Protospacer
***********************.************

33. spacer 3.29|558507|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.972

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcattaaaccacctcgatttc	Protospacer
*******************.****************

34. spacer 3.31|558635|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

35. spacer 3.31|558635|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

acgtttgcggtagttttaccgggcacggtcaaatat	CRISPR spacer
acgttcgcggtagttttaccgggcacggtcaaatat	Protospacer
*****.******************************

36. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

37. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

38. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

39. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

40. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

41. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

42. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

43. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

44. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.967

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagtgacaacaacagcaccatccatt	Protospacer
***********************.******

45. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.967

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagtgacaacaacagcaccatccatt	Protospacer
***********************.******

46. spacer 4.12|2783039|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.967

gatgccgcagcatatatatttaattgagct	CRISPR spacer
gatgccgcagcgtatatatttaattgagct	Protospacer
***********.******************

47. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacttcaacgttagggctttttttatgcaa	Protospacer
***.**************************

48. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacttcaacgttagggctttttttatgcaa	Protospacer
***.**************************

49. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacttcaacgttagggctttttttatgcaa	Protospacer
***.**************************

50. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacttcaacgttagggctttttttatgcaa	Protospacer
***.**************************

51. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.967

aacctcaacgttagggctttttttatgcaa-	CRISPR spacer
aacctcaacgttagggc-ttttttatgcaaa	Protospacer
***************** ************

52. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

53. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

54. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

55. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

56. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

57. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

58. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

59. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

60. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

61. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

62. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

63. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 1, identity: 0.967

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtatataggttaggaagtaaactccttgta	Protospacer
*****.************************

64. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.967

cttaaagttgtcaacttctattttttatat-	CRISPR spacer
cttaaagttgtcaacttcta-tttttatata	Protospacer
******************** *********

65. spacer 4.23|2782378|27|CP028183|PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.963

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagtgacaacaacagcaccatcc	Protospacer
***********************.***

66. spacer 4.23|2782378|27|CP028183|PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.963

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagtgacaacaacagcaccatcc	Protospacer
***********************.***

67. spacer 2.2|541213|34|CP028183|PILER-CR,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.941

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
*.*************************.******

68. spacer 2.2|541213|34|CP028183|PILER-CR,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.941

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
ccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
*.*************************.******

69. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

70. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

71. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaacg	Protospacer
*******************.**************

72. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.943

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgattgcggggatggggaaaacg	Protospacer
***************** ****************

73. spacer 2.7|541212|35|CP028183|CRISPRCasFinder matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.943

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
**.*************************.******

74. spacer 2.7|541212|35|CP028183|CRISPRCasFinder matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.943

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatagaaacgatcttc	Protospacer
**.*************************.******

75. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

76. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

77. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

78. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgattgcggggatggggaaaacg	Protospacer
****************** ****************

79. spacer 3.6|557016|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

cgcttcacgttggtttttcgtagcccaattgctaaa	CRISPR spacer
cgcttcacgttgattttttgtagcccaattgctaaa	Protospacer
************.*****.*****************

80. spacer 3.11|557341|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

81. spacer 3.17|557726|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ttgttcgacggcttagacaaccatcacgcttcttta	CRISPR spacer
cttttcgacggcttagacaaccatcacgcttcttta	Protospacer
.* *********************************

82. spacer 3.19|557856|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ctcataaggatttcgaggcgggttaaacgacatgta	CRISPR spacer
ctcataaggattgcgaggcgggttaaatgacatgta	Protospacer
************ **************.********

83. spacer 3.29|558507|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.944

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
cacgtactttaatcggcatcaaatcacctctatttc	Protospacer
***********************.****** *****

84. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

85. spacer 3.32|558700|37|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

86. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 2, identity: 0.933

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcactgttagggctttttttatgcaa	Protospacer
******* .*********************

87. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.933

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcgccgttagggctttttttatgcaa	Protospacer
******. **********************

88. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 2, identity: 0.933

-aacctcaacgttagggctttttttatgcaa	CRISPR spacer
taaccac-acgttagggctttttttatgcaa	Protospacer
 **** * ***********************

89. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.933

aacctcaacgttagggctttttttatgcaa-	CRISPR spacer
aacctcaccgttagggc-ttttttatgcaaa	Protospacer
******* ********* ************

90. spacer 4.16|2783303|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.933

acacagcaagcccactagtttcggatttta	CRISPR spacer
atacagcaaggccactagtttcggatttta	Protospacer
*.******** *******************

91. spacer 4.16|2783303|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.933

acacagcaagcccactagtttcggatttta	CRISPR spacer
atacagcaagaccactagtttcggatttta	Protospacer
*.******** *******************

92. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

93. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

94. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

95. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

96. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

97. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

98. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

99. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

100. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

101. spacer 4.19|2783501|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to FJ147490 (Listeria phage 20422-1 unknown genes) position: , mismatch: 2, identity: 0.933

gtatacaggttaggaagtaaactccttgta	CRISPR spacer
gtgtataggttaggaagtaaactccttgta	Protospacer
**.**.************************

102. spacer 4.23|2782378|27|CP028183|PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.926

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcggtgacaacaacagcaccatcc	Protospacer
*****.*****************.***

103. spacer 3.1|556691|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.917

aaagaccttcgatttcattctcactttccagttaat	CRISPR spacer
gaaaaccttcgatttcattcttactttccagttaat	Protospacer
.**.*****************.**************

104. spacer 3.18|557791|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

105. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 3, identity: 0.9

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcggtgacaacaacagcaccatccact	Protospacer
*****.*****************.****.*

106. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 3, identity: 0.9

aacctcaacgttagggc-tttttttatgcaa	CRISPR spacer
aacctcgccgttagggcttttttttatgca-	Protospacer
******. ********* ************

107. spacer 4.22|2783699|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 3, identity: 0.9

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattgtttattttctcccagataaaatcg	Protospacer
***********.********.********.

108. spacer 4.16|2783303|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 4, identity: 0.867

acacagcaagcccactagtttcggatttta	CRISPR spacer
atacagcaagaccactagtttctgatttca	Protospacer
*.******** *********** *****.*

109. spacer 3.18|557791|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

110. spacer 4.9|2782841|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 5, identity: 0.833

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttacgtgaatttagtgatgaataatcga	Protospacer
*****.******************... **

111. spacer 4.9|2782841|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 5, identity: 0.833

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttacgtgaatttagtgatgaataatcga	Protospacer
*****.******************... **

112. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 5, identity: 0.833

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
taacccaccgttagggctttttttatgaaa	Protospacer
 * *.** ******************* **

113. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 5, identity: 0.833

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
taacccaccgttagggctttttttatgaaa	Protospacer
 * *.** ******************* **

114. spacer 4.17|2783369|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 5, identity: 0.833

atgaaagagcattcagactttggaaaaacg	CRISPR spacer
accatcgagcgttcagactttggaaaaacg	Protospacer
*. *  ****.*******************

115. spacer 4.17|2783369|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 5, identity: 0.833

atgaaagagcattcagactttggaaaaacg	CRISPR spacer
accatcgagcgttcagactttggaaaaacg	Protospacer
*. *  ****.*******************

116. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026684 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence) position: , mismatch: 5, identity: 0.833

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaaattttcaacttctattttttctct	Protospacer
 *****.** **************** * *

117. spacer 4.23|2782378|27|CP028183|PILER-CR matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 5, identity: 0.815

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagttacaacagcagcaccgaaa	Protospacer
******** ******.********

118. spacer 4.23|2782378|27|CP028183|PILER-CR matches to LC589952 (Enterobacter phage vB_EkoM5VN DNA, complete genome) position: , mismatch: 5, identity: 0.815

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagttacaacagcagcaccgaaa	Protospacer
******** ******.********

119. spacer 4.23|2782378|27|CP028183|PILER-CR matches to KX431560 (Cronobacter phage vB_CsaM_leN, complete genome) position: , mismatch: 5, identity: 0.815

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagttacaacagcagcaccgaaa	Protospacer
******** ******.********

120. spacer 4.23|2782378|27|CP028183|PILER-CR matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 5, identity: 0.815

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagttacaacagcagcaccgaaa	Protospacer
******** ******.********

121. spacer 4.23|2782378|27|CP028183|PILER-CR matches to NC_048645 (Cronobacter phage vB_CsaM_leB, complete genome) position: , mismatch: 5, identity: 0.815

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagttacaacagcagcaccgaaa	Protospacer
******** ******.********

122. spacer 3.15|557600|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

123. spacer 3.29|558507|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 6, identity: 0.833

cacgtactttaatcggcatcaaaccacctcgatttc	CRISPR spacer
tattaactttaatcggcatcaaaccacctctatctc	Protospacer
.*.  ************************* **.**

124. spacer 3.33|558766|35|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

125. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

126. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to LC589952 (Enterobacter phage vB_EkoM5VN DNA, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

127. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to KX431560 (Cronobacter phage vB_CsaM_leN, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

128. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

129. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to NC_048645 (Cronobacter phage vB_CsaM_leB, complete genome) position: , mismatch: 6, identity: 0.8

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagttacaacagcagcaccgaaactt	Protospacer
******** ******.********    **

130. spacer 4.10|2782907|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP021182 (Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence) position: , mismatch: 6, identity: 0.8

caaccatttgaatccaacgactaatatagc	CRISPR spacer
caatcatttcaatccaacgactattgtgac	Protospacer
***.***** ************* *.*..*

131. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to X85009 (Bacteriophage A500 hol500 and ply500 genes) position: , mismatch: 6, identity: 0.8

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
tttataaacattagggctttttttatgcaa	Protospacer
  . * ***.********************

132. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 6, identity: 0.8

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
tttataaacattagggctttttttatgcaa	Protospacer
  . * ***.********************

133. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KT207918 (Bacillus phage Eyuki, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactattttttaagg	Protospacer
 ***** ********* ********** .

134. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_031054 (Bacillus phage DirtyBetty, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactattttttaagg	Protospacer
 ***** ********* ********** .

135. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MH538193 (Bacillus phage Saddex, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

136. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MF288919 (Bacillus phage AaronPhadgers, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

137. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MG763894 (Bacillus phage HonestAbe, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

138. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_031116 (Bacillus phage Zuko, complete genome) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaaggt	Protospacer
 ***** ********* ******** * .*

139. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 6, identity: 0.8

cttaaagttgtcaacttctattttttatat	CRISPR spacer
cctcattatgtcaatttctattttttatat	Protospacer
*.* *   ******.***************

140. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP029570 (Acinetobacter baumannii strain DA33098 plasmid pDA33098-108, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

141. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP027122 (Acinetobacter baumannii strain AR_0056 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

142. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP027608 (Acinetobacter baumannii strain AR_0102 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

143. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP026705 (Acinetobacter baumannii strain AR_0056 plasmid tig00000058_pilon, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

144. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP035046 (Acinetobacter baumannii strain ABUH793 plasmid p107.0Kbp, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

145. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP031445 (Acinetobacter baumannii strain MDR-UNC plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

146. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP040426 (Acinetobacter baumannii strain PB364 plasmid pPB364_1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

147. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 7, identity: 0.767

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
cagcacagggaacgtatcttcattgtcgga	Protospacer
**. .. ******* ****** ********

148. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 7, identity: 0.767

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
gaactttttctttgtgtaggtgattttggc	Protospacer
*  .******** *************.*..

149. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 7, identity: 0.767

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
gaactttttctttgtgtaggtgattttggc	Protospacer
*  .******** *************.*..

150. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012385 (Enterococcus durans strain KLDS 6.0930 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
gtgcttctgccatctttcatcatcctttatt	Protospacer
 **.*  **.***.****************

151. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012367 (Enterococcus durans strain KLDS 6.0933 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
gtgcttctgccatctttcatcatcctttatt	Protospacer
 **.*  **.***.****************

152. spacer 4.9|2782841|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_019274 (Psychrobacter sp. DAB_AL62B plasmid pP62BP1, complete sequence) position: , mismatch: 7, identity: 0.767

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttatgtaaatttagtgatgaagattatg	Protospacer
********.************** . .* .

153. spacer 4.9|2782841|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018257 (Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome) position: , mismatch: 7, identity: 0.767

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttatctgaatttattgatgaaatatagt	Protospacer
****** ******** *******  ..**

154. spacer 4.9|2782841|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MT254578 (Bacillus phage Izhevsk, complete genome) position: , mismatch: 7, identity: 0.767

atttatgtgaatttagtgatgaatggcaga	CRISPR spacer
atttaggtgaatttagagatgaaagtttca	Protospacer
***** ********** ****** * .  *

155. spacer 4.17|2783369|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH113855 (Vibrio alginolyticus strain Vb1796 plasmid pVb1796, complete sequence) position: , mismatch: 7, identity: 0.767

atgaaagagcattcagactttggaaaaacg	CRISPR spacer
aagcaagagcattcagactttgaaagagtt	Protospacer
* * ******************.**.*..

156. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KX961629 (Bacillus phage BJ4, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

157. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_031070 (Bacillus phage Nemo, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

158. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MF288920 (Bacillus phage Zainny, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

159. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ489399 (Bacillus phage Hakuna, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

160. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NC_031027 (Bacillus phage SageFayge, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

161. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KX349902 (Bacillus phage Kida, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

162. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KX156152 (Bacillus phage Smudge, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

163. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KJ489401 (Bacillus phage Megatron, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

164. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MN038179 (Bacillus phage ALPS, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

165. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MH638311 (Bacillus phage OmnioDeoPrimus, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

166. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MF288918 (Bacillus phage Bubs, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

167. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to KX961632 (Bacillus phage SBP8a, complete genome) position: , mismatch: 7, identity: 0.767

cttaaagttgtcaacttctattttttatat	CRISPR spacer
attaaatttgtcaactactatttttaagga	Protospacer
 ***** ********* ******** * .

168. spacer 4.22|2783699|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 7, identity: 0.767

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tattcatttatctcctcctaaataaaatcc	Protospacer
*  *..*******.****.**********

169. spacer 4.23|2782378|27|CP028183|PILER-CR matches to MN694268 (Marine virus AFVG_250M110, complete genome) position: , mismatch: 7, identity: 0.741

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
gcaacagtgacaacaacagcaccaaca	Protospacer
 .  *******************. *

170. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.733

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ggtaatcgggaaccgatcttccttggcgat	Protospacer
 . *.******** *********** **.

171. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NC_015156 (Vibrio nigripulchritudo plasmid VIBNI_pA, complete genome) position: , mismatch: 8, identity: 0.733

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
acggcaattcttggtgcaggtgattttgat	Protospacer
.*  .  *********.*********.***

172. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NC_015156 (Vibrio nigripulchritudo plasmid VIBNI_pA, complete genome) position: , mismatch: 8, identity: 0.733

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
acggcaattcttggtgcaggtgattttgat	Protospacer
.*  .  *********.*********.***

173. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 8, identity: 0.742

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
tctctaatttcatttttcatcatccttgtaa	Protospacer
*. .**** ******************   .

174. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to AP013449 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S35-C82) position: , mismatch: 8, identity: 0.742

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ttattaatgtcttttttcatcatgccgctcg	Protospacer
**.******** *********** *. . .*

175. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023393 (Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence) position: , mismatch: 8, identity: 0.733

cttaaagttgtcaacttctattttttatat	CRISPR spacer
tatcttgttctcaccttctattttttataa	Protospacer
. *   *** *** ***************

176. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016726 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence) position: , mismatch: 8, identity: 0.733

cttaaagttgtcaacttctattttttatat	CRISPR spacer
tatcttgttctcaccttctattttttataa	Protospacer
. *   *** *** ***************

177. spacer 2.7|541212|35|CP028183|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.743

tctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tccgtaaaatcaaaagtatcatcgattttatgata	Protospacer
**.******************* **  . **  *

178. spacer 3.15|557600|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *

179. spacer 3.20|557921|35|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

180. spacer 3.33|558766|35|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

181. spacer 3.33|558766|35|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

182. spacer 3.33|558766|35|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

183. spacer 3.33|558766|35|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

184. spacer 3.33|558766|35|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

185. spacer 3.33|558766|35|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

186. spacer 4.4|2782510|30|CP028183|CRISPRCasFinder,CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 9, identity: 0.7

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ggtgatcgggaaccgatcttccttggcgat	Protospacer
 . ..******** *********** **.

187. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_KX426232 (Acinetobacter lwoffii strain VS15 plasmid pALWVS1.1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

188. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_AP019742 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA2, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

189. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP021429 (Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

190. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP026416 (Acinetobacter sp. ACNIH2 plasmid pACI-3569, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

191. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP030755 (Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

192. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP026426 (Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

193. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP032102 (Acinetobacter lwoffii strain EK30A plasmid pALWEK1.1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

194. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP015616 (Acinetobacter schindleri strain ACE plasmid p1AsACE, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

195. spacer 4.5|2782576|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP051209 (Acinetobacter sp. NEB149 plasmid pMsp179, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

196. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_KX426232 (Acinetobacter lwoffii strain VS15 plasmid pALWVS1.1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

197. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_AP019742 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA2, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

198. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP021429 (Acinetobacter pittii strain HUMV-6483 plasmid p11, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

199. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP026416 (Acinetobacter sp. ACNIH2 plasmid pACI-3569, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

200. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP030755 (Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

201. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP026426 (Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

202. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP032102 (Acinetobacter lwoffii strain EK30A plasmid pALWEK1.1, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

203. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP015616 (Acinetobacter schindleri strain ACE plasmid p1AsACE, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

204. spacer 4.6|2782642|30|CP028183|CRISPRCasFinder,CRT matches to NZ_CP051209 (Acinetobacter sp. NEB149 plasmid pMsp179, complete sequence) position: , mismatch: 9, identity: 0.7

gctttttttcttggtgtaggtgatttcgat	CRISPR spacer
aattattttcttggtgttggtgattcatgg	Protospacer
. ** ************ *******.  .

205. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 9, identity: 0.71

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ctgttaatgtcctttttcatcgtctgcttct	Protospacer
.********** *********.**. .* .

206. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to HM144387 (Bacillus phage W.Ph., complete genome) position: , mismatch: 9, identity: 0.71

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
cttgacttgccattattcatcatcctttatc	Protospacer
.*     **.**** ***************

207. spacer 4.14|2783171|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034542 (Brevibacillus sp. SCSIO 07484 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

aatggtgaatgcgttgaagaaggaggaact	CRISPR spacer
ggccgtgaatgcgttgatgaaggaggcggc	Protospacer
... ************* ******** . .

208. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to JF270478 (Psychrobacter phage Psymv2, complete genome) position: , mismatch: 9, identity: 0.7

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
ttatctaacgatagggctttttttatgcct	Protospacer
   ...**** *****************

209. spacer 4.20|2783567|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034167 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-3, complete sequence) position: , mismatch: 9, identity: 0.7

cttaaagttgtcaacttctattttttatat	CRISPR spacer
agaggagttgtcaaattctatttttttatt	Protospacer
   ..********* ***********   *

210. spacer 2.2|541213|34|CP028183|PILER-CR,CRT matches to MK044828 (Streptococcus phage 33888, complete genome) position: , mismatch: 10, identity: 0.706

ctgtaaaatcaaaagtatcatagaaacaatcttc	CRISPR spacer
tgggaaaatcaaaagtatcaaagtaacagatgta	Protospacer
. * **************** ** ****. . *

211. spacer 3.30|558572|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034816 (Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.676

caagatatgctagaaatggcgcaaatagcgcgcg	CRISPR spacer
gtccggctgcttgaaatggcgcagatagcgcgtc	Protospacer
    .  **** ***********.********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

130149 : 136674

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS30183.1\|130149_130602_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
AVS30184.1\|130607_130943_-	XRE family transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
AVS30185.1\|131159_131588_+	hypothetical protein	NA	NA	NA	NA
AVS30186.1\|131599_132016_+	hypothetical protein	A8ASQ1	Listeria_phage	3.8e-20	38.6
AVS30187.1\|132293_132683_+	DUF5072 domain-containing protein	NA	NA	NA	NA
AVS30188.1\|132695_133208_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
AVS30189.1\|133255_133558_+	segregation and condensation protein B	NA	NA	NA	NA
AVS30190.1\|133599_134004_+	phenylalanine racemase	NA	NA	NA	NA
AVS30191.1\|133990_135859_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
AVS30192.1\|135855_136674_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	9.4e-39	35.0

DBSCAN-SWA_2

684038 : 741009

Listeria_phage(55.88%)

portal,holin,terminase,capsid,tail,head,integrase,protease,transposase

attL 717047:717070|attR 719845:719868

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS30684.1\|684038_685190_-\|integrase	site-specific integrase	A8ATX2	Listeria_phage	4.5e-87	46.3
AVS30685.1\|685211_685925_-	hypothetical protein	NA	NA	NA	NA
AVS30686.1\|685979_686480_-	hypothetical protein	A0A1S7FYX8	Listeria_phage	7.1e-13	31.1
AVS30687.1\|686480_686831_-	helix-turn-helix domain-containing protein	A0A059T669	Listeria_phage	7.9e-19	47.6
AVS30688.1\|686984_687182_+	XRE family transcriptional regulator	A0A059T7X5	Listeria_phage	7.5e-11	52.3
AVS30689.1\|687204_687531_+	DUF771 domain-containing protein	A0A2H4J474	uncultured_Caudovirales_phage	3.2e-14	40.6
AVS30690.1\|688743_689100_+	MerR family transcriptional regulator	NA	NA	NA	NA
AVS30691.1\|689096_689513_+	hypothetical protein	NA	NA	NA	NA
AVS30692.1\|689699_690224_+	sugar-phosphate nucleotidyltransferase	A0A059T5F9	Listeria_phage	5.9e-95	95.4
AVS30693.1\|690232_690697_+	class I SAM-dependent methyltransferase	A0A059T693	Listeria_phage	1.4e-87	97.4
AVS30694.1\|690693_691254_+	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	3.8e-100	95.7
AVS30695.1\|691312_691714_+	hypothetical protein	A8ATD9	Listeria_phage	2.6e-74	100.0
AVS30696.1\|691710_691920_+	hypothetical protein	A8ATE0	Listeria_phage	1.6e-30	94.2
AVS30697.1\|692023_692203_+	hypothetical protein	A0A076G7F4	Listeria_phage	1.4e-19	85.5
AVS30698.1\|692199_692679_+	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	2.5e-68	83.8
AVS30699.1\|692699_692939_+	hypothetical protein	NA	NA	NA	NA
AVS30700.1\|692929_693115_+	hypothetical protein	NA	NA	NA	NA
AVS30701.1\|693185_693704_+	RNA polymerase subunit sigma	NA	NA	NA	NA
AVS30702.1\|693700_694243_+\|integrase	site-specific integrase	H0USV4	Bacillus_phage	2.5e-48	53.3
AVS30703.1\|694258_694597_+	hypothetical protein	NA	NA	NA	NA
AVS30704.1\|694861_695188_+	hypothetical protein	NA	NA	NA	NA
AVS30705.1\|695184_695547_+	HNH endonuclease	A0A075M5R4	Enterococcus_phage	1.2e-14	45.2
AVS30706.1\|695641_696169_+\|terminase	phage terminase small subunit P27 family	J7KC46	Streptococcus_phage	2.3e-30	46.1
AVS30707.1\|696137_697889_+\|terminase	terminase large subunit	A0A2H4JCI4	uncultured_Caudovirales_phage	5.3e-156	50.5
AVS30708.1\|697895_698096_+	DUF1056 domain-containing protein	NA	NA	NA	NA
AVS30709.1\|698098_699334_+\|portal	phage portal protein	A0A2H4JAR2	uncultured_Caudovirales_phage	3.6e-82	42.1
AVS30710.1\|699330_699897_+\|head,protease	HK97 family phage prohead protease	A0A1D6Z2A7	Staphylococcus_phage	1.0e-44	52.2
AVS30711.1\|699954_701130_+\|capsid	phage major capsid protein	A0A060AI54	Enterococcus_phage	2.2e-44	38.1
AVS30712.1\|701178_701517_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JB77	uncultured_Caudovirales_phage	8.1e-13	37.8
AVS30713.1\|701486_701807_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AVS30714.1\|701800_702166_+	hypothetical protein	NA	NA	NA	NA
AVS30715.1\|702168_702567_+	hypothetical protein	NA	NA	NA	NA
AVS30716.1\|702587_703163_+\|tail	phage tail protein	M1PRQ7	Streptococcus_phage	1.2e-32	42.4
AVS30717.1\|703252_703600_+	hypothetical protein	NA	NA	NA	NA
AVS30718.1\|703796_707996_+\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	1.2e-124	43.7
AVS30719.1\|707988_710232_+\|tail	phage tail protein	A0A059T682	Listeria_phage	1.2e-56	29.4
AVS30720.1\|710237_712529_+	hypothetical protein	A0A059T7Y6	Listeria_phage	5.7e-134	37.9
AVS30721.1\|712521_713583_+	hypothetical protein	A0A059T7R4	Listeria_phage	2.7e-94	50.7
AVS30722.1\|713621_713987_+	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
AVS30723.1\|713999_714281_+\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
AVS30724.1\|714280_715126_+	peptidase M15	A0A059T7Y8	Listeria_phage	1.8e-138	95.1
AVS30725.1\|715199_715649_-	XRE family transcriptional regulator	Q9T196	Listeria_phage	9.3e-73	95.3
AVS30726.1\|715653_716025_-	hypothetical protein	A0A059T5F6	Listeria_phage	1.6e-57	92.6
717047:717070	attL	NA	NA	NA	NA
AVS30727.1\|717517_717799_-\|integrase	integrase	NA	NA	NA	NA
AVS30728.1\|718200_719064_+	peptidase	NA	NA	NA	NA
AVS30729.1\|719063_719423_+	DUF3221 domain-containing protein	NA	NA	NA	NA
AVS30730.1\|719954_720488_+	DUF3267 domain-containing protein	NA	NA	NA	NA
719845:719868	attR	NA	NA	NA	NA
AVS30731.1\|720551_721469_+	aldo/keto reductase	NA	NA	NA	NA
AVS30732.1\|721734_723615_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-106	38.2
AVS30733.1\|723710_724439_+	hypothetical protein	NA	NA	NA	NA
AVS30734.1\|724579_725230_+	transaldolase	A0A0E3HJ81	Synechococcus_phage	3.4e-15	27.6
AVS30735.1\|725269_727090_-	LTA synthase family protein	W6LM83	Streptococcus_phage	2.2e-48	28.4
AVS30736.1\|727324_728716_+	amino acid transporter	NA	NA	NA	NA
AVS30737.1\|728805_729645_+	glyoxalase	NA	NA	NA	NA
AVS30738.1\|729727_730012_-	hypothetical protein	NA	NA	NA	NA
AVS30739.1\|730109_731060_+	magnesium transporter CorA family protein	NA	NA	NA	NA
AVS30740.1\|731083_731725_+	GntR family transcriptional regulator	NA	NA	NA	NA
AVS30741.1\|731767_734458_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA
AVS30742.1\|734503_735151_+	GntR family transcriptional regulator	NA	NA	NA	NA
AVS30743.1\|735159_735696_-	N-acetyltransferase	NA	NA	NA	NA
AVS33049.1\|735682_736603_-	DUF975 domain-containing protein	NA	NA	NA	NA
AVS30744.1\|736793_737003_+	hypothetical protein	NA	NA	NA	NA
AVS30745.1\|737070_737778_+	serine/threonine protein phosphatase	A0A249Y183	Enterococcus_phage	2.5e-19	27.8
AVS30746.1\|737821_738385_-	DUF420 domain-containing protein	NA	NA	NA	NA
AVS30747.1\|738504_738921_+	hypothetical protein	NA	NA	NA	NA
AVS30748.1\|738972_739608_+	endonuclease III domain-containing protein	NA	NA	NA	NA
AVS30749.1\|739597_740494_-	Rgg family transcriptional regulator	NA	NA	NA	NA
AVS30750.1\|740724_741009_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1164822 : 1172245

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS31177.1\|1164822_1165206_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
AVS31178.1\|1165227_1166211_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
AVS31179.1\|1166225_1167239_+	glycosyl transferase	A0A1V0SAH6	Catovirus	6.0e-11	32.0
AVS31180.1\|1167447_1168938_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
AVS31181.1\|1168949_1169774_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	3.3e-68	52.9
AVS31182.1\|1169786_1170095_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AVS31183.1\|1170155_1170560_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
AVS31184.1\|1170688_1172245_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_4

1261387 : 1364340

110

Listeria_phage(71.67%)

portal,holin,terminase,tRNA,capsid,tail,head,integrase,protease

attL 1287072:1287093|attR 1326654:1326675

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS31292.1\|1261387_1262440_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.3e-29	34.9
AVS31293.1\|1262439_1264848_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AVS31294.1\|1265008_1265710_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-33	35.4
AVS31295.1\|1265723_1269134_+	ABC transporter permease	NA	NA	NA	NA
AVS31296.1\|1269231_1269684_+	MarR family transcriptional regulator	NA	NA	NA	NA
AVS31297.1\|1269699_1272900_+	MMPL family transporter	NA	NA	NA	NA
AVS31298.1\|1273006_1273681_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	3.7e-49	47.3
AVS31299.1\|1273717_1274644_-	ribonuclease HIII	NA	NA	NA	NA
AVS31300.1\|1274797_1275061_+	cell division protein ZapA	NA	NA	NA	NA
AVS31301.1\|1275060_1275603_+	CvpA family protein	NA	NA	NA	NA
AVS31302.1\|1275695_1277408_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.1e-17	24.8
AVS31303.1\|1277430_1279788_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
AVS31304.1\|1279868_1280180_+	thiol reductase thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
AVS31305.1\|1280255_1282067_+	UvrABC system protein C	NA	NA	NA	NA
AVS31306.1\|1282255_1283470_+	aspartate kinase	NA	NA	NA	NA
AVS31307.1\|1283525_1284020_-	DUF2507 domain-containing protein	NA	NA	NA	NA
AVS31308.1\|1284167_1284968_+	glutamate racemase	NA	NA	NA	NA
AVS31309.1\|1284980_1285727_+	ribonuclease PH	NA	NA	NA	NA
AVS31310.1\|1285730_1286342_+	XTP/dITP diphosphatase	NA	NA	NA	NA
AVS31311.1\|1286378_1286903_+	metallophosphoesterase	NA	NA	NA	NA
1287072:1287093	attL	NA	NA	NA	NA
AVS31312.1\|1287188_1288343_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	1.1e-207	94.8
AVS31313.1\|1288474_1289089_-	hypothetical protein	A0A059T7Z1	Listeria_phage	7.7e-78	77.0
AVS31314.1\|1289139_1289592_-	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	4.8e-77	90.0
AVS31315.1\|1289608_1289932_-	XRE family transcriptional regulator	A0A059T6G1	Listeria_phage	7.2e-35	71.0
AVS31316.1\|1290330_1290534_-	hypothetical protein	NA	NA	NA	NA
AVS31317.1\|1290600_1290792_+	XRE family transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
AVS31318.1\|1290813_1291056_+	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
AVS31319.1\|1291058_1291244_+	hypothetical protein	A8ATD3	Listeria_phage	3.7e-28	98.4
AVS31320.1\|1291981_1292224_+	hypothetical protein	NA	NA	NA	NA
AVS31321.1\|1292509_1292725_+	hypothetical protein	NA	NA	NA	NA
AVS31322.1\|1292721_1293366_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	9.4e-34	42.6
AVS31323.1\|1293424_1293940_+	hypothetical protein	C9E2P0	Enterococcus_phage	1.8e-32	45.5
AVS33059.1\|1294118_1294589_+	DUF1642 domain-containing protein	R4IBV9	Listeria_phage	2.5e-28	69.2
AVS31324.1\|1294589_1295012_+	hypothetical protein	Q8W5W4	Listeria_phage	1.5e-69	95.0
AVS31325.1\|1295178_1295556_+	hypothetical protein	Q8W5W2	Listeria_phage	5.1e-40	66.9
AVS31326.1\|1295559_1296039_+	hypothetical protein	R4IBM0	Listeria_phage	7.6e-57	76.7
AVS31327.1\|1296058_1296748_+	DNA-binding protein	R4IDY8	Listeria_phage	1.1e-128	96.9
AVS31328.1\|1296811_1298068_+	ATP-dependent helicase	Q8W5V9	Listeria_phage	2.7e-234	96.2
AVS31329.1\|1298092_1298578_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	2.9e-88	100.0
AVS31330.1\|1298600_1300874_+	DNA primase	A0A059T6A4	Listeria_phage	0.0e+00	99.9
AVS31331.1\|1301160_1301475_+	VRR-NUC domain-containing protein	Q8W5V6	Listeria_phage	1.7e-52	98.1
AVS31332.1\|1301587_1302121_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	8.2e-76	78.3
AVS31333.1\|1302338_1302566_+	hypothetical protein	NA	NA	NA	NA
AVS31334.1\|1302578_1303004_+	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
AVS31335.1\|1303101_1303845_+	DUF559 domain-containing protein	NA	NA	NA	NA
AVS31336.1\|1304304_1304631_+	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
AVS31337.1\|1304630_1304945_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
AVS31338.1\|1304993_1305350_+	hypothetical protein	A8AT94	Listeria_phage	2.0e-46	99.0
AVS31339.1\|1305346_1306990_+\|terminase	terminase large subunit	A8AT95	Listeria_phage	0.0e+00	98.7
AVS31340.1\|1307001_1308132_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	4.0e-213	98.4
AVS31341.1\|1308128_1308926_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	4.3e-137	95.5
AVS31342.1\|1308952_1310104_+\|capsid	phage major capsid protein	A8AT98	Listeria_phage	2.7e-201	93.0
AVS31343.1\|1310290_1310590_+	hypothetical protein	A8ATA0	Listeria_phage	5.3e-48	100.0
AVS31344.1\|1310573_1310939_+\|head,tail	phage head-tail adapter protein	A8ATA1	Listeria_phage	2.3e-61	94.2
AVS31345.1\|1310935_1311337_+	hypothetical protein	A8ATA2	Listeria_phage	2.0e-66	97.0
AVS31346.1\|1311333_1311717_+	DUF3168 domain-containing protein	A8ATA3	Listeria_phage	4.4e-63	95.3
AVS31347.1\|1311738_1312326_+\|tail	phage tail protein	A8ATA4	Listeria_phage	4.0e-108	100.0
AVS31348.1\|1312397_1312730_+	hypothetical protein	A8ATA5	Listeria_phage	1.8e-52	99.1
AVS31349.1\|1312945_1317871_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	94.5
AVS31350.1\|1317863_1319513_+\|tail	phage tail protein	A0A059T682	Listeria_phage	0.0e+00	99.6
AVS31351.1\|1319525_1321820_+	hypothetical protein	A0A059T7Y6	Listeria_phage	0.0e+00	98.3
AVS31352.1\|1321809_1322901_+	carbohydrate-binding protein CenC	A0A059T7R4	Listeria_phage	5.8e-201	98.9
AVS31353.1\|1322939_1323305_+	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
AVS31354.1\|1323317_1323599_+\|holin	holin	A8ASL4	Listeria_phage	1.0e-40	93.5
AVS31355.1\|1323598_1324444_+	peptidase M15	A0A059T7Y8	Listeria_phage	2.7e-137	94.7
AVS33060.1\|1324484_1325258_-	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
AVS31356.1\|1325531_1325714_-	hypothetical protein	A0A059T7Z0	Listeria_phage	2.3e-22	96.6
AVS31357.1\|1326154_1326388_+	hypothetical protein	A8ATC5	Listeria_phage	1.6e-36	98.7
AVS31358.1\|1326384_1326576_+	hypothetical protein	A8ATC6	Listeria_phage	8.9e-25	87.3
AVS31359.1\|1327034_1328393_+	DUF1254 domain-containing protein	NA	NA	NA	NA
1326654:1326675	attR	NA	NA	NA	NA
AVS31360.1\|1328434_1329028_-	hypothetical protein	NA	NA	NA	NA
AVS31361.1\|1329164_1329572_-	VOC family protein	NA	NA	NA	NA
AVS31362.1\|1329736_1330336_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	2.9e-29	40.5
AVS31363.1\|1330368_1330629_-	hypothetical protein	NA	NA	NA	NA
AVS31364.1\|1330752_1332165_+	RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-50	32.1
AVS31365.1\|1332189_1332453_+	DUF3116 domain-containing protein	NA	NA	NA	NA
AVS31366.1\|1332620_1333097_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
AVS31367.1\|1333134_1333380_-	hypothetical protein	NA	NA	NA	NA
AVS31368.1\|1333376_1334582_-	MFS transporter	NA	NA	NA	NA
AVS31369.1\|1334578_1334788_-	hypothetical protein	NA	NA	NA	NA
AVS31370.1\|1334786_1335446_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
AVS31371.1\|1335487_1335682_-	hypothetical protein	NA	NA	NA	NA
AVS31372.1\|1335748_1336597_-	YitT family protein	NA	NA	NA	NA
AVS31373.1\|1337216_1337930_+	trehalose operon repressor	NA	NA	NA	NA
AVS31374.1\|1337949_1339608_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
AVS31375.1\|1339626_1341111_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
AVS31376.1\|1341226_1341679_+	NUDIX domain-containing protein	NA	NA	NA	NA
AVS31377.1\|1341725_1342190_-	hypothetical protein	NA	NA	NA	NA
AVS31378.1\|1342378_1343299_+	alpha/beta hydrolase	NA	NA	NA	NA
AVS31379.1\|1343318_1344566_-	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.2e-106	51.8
AVS31380.1\|1344549_1345380_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.3e-47	42.4
AVS31381.1\|1345515_1346655_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
AVS31382.1\|1346735_1347131_-	XRE family transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
AVS31383.1\|1347281_1347497_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVS31384.1\|1347614_1348148_+	hypothetical protein	NA	NA	NA	NA
AVS31385.1\|1348165_1348831_+	hypothetical protein	NA	NA	NA	NA
AVS31386.1\|1349092_1350031_+	hypothetical protein	NA	NA	NA	NA
AVS31387.1\|1350145_1351429_+	trigger factor	NA	NA	NA	NA
AVS31388.1\|1351614_1352874_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
AVS31389.1\|1352992_1353559_+	signal peptidase I	NA	NA	NA	NA
AVS31390.1\|1353593_1354163_+	signal peptidase I	NA	NA	NA	NA
AVS31391.1\|1354264_1354807_+	signal peptidase I	NA	NA	NA	NA
AVS31392.1\|1354816_1355680_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
AVS31393.1\|1355676_1356462_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
AVS31394.1\|1356595_1357456_+	DNA-protecting protein DprA	NA	NA	NA	NA
AVS31395.1\|1357726_1359805_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
AVS31396.1\|1359867_1361172_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
AVS31397.1\|1361454_1362357_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
AVS31398.1\|1362377_1362917_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA
AVS31399.1\|1362930_1364340_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	3.7e-43	28.7

DBSCAN-SWA_5

1899319 : 1907605

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS31884.1\|1899319_1899886_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
AVS31885.1\|1899882_1900932_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.6e-62	43.5
AVS31886.1\|1900950_1902378_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
AVS31887.1\|1902362_1904582_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-160	41.4
AVS31888.1\|1904574_1905258_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AVS31889.1\|1905261_1905507_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AVS31890.1\|1905518_1906232_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	8.8e-41	37.8
AVS31891.1\|1906312_1907605_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

DBSCAN-SWA_6

2422687 : 2459908

Listeria_phage(97.87%)

capsid,holin,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS32381.1\|2422687_2422894_+	hypothetical protein	A0A059T7Z0	Listeria_phage	1.3e-16	82.8
AVS32382.1\|2423109_2424108_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	3.9e-71	44.8
AVS32383.1\|2424211_2425060_-	peptidase M15	A0A059T7Y8	Listeria_phage	2.0e-129	82.7
AVS32384.1\|2425059_2425341_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
AVS32385.1\|2425353_2425719_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
AVS32386.1\|2425757_2427923_-	hypothetical protein	A8ATW1	Listeria_phage	0.0e+00	94.3
AVS32387.1\|2427935_2429504_-\|tail	phage tail protein	A8ATW0	Listeria_phage	9.8e-303	98.9
AVS32388.1\|2429500_2434300_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	85.9
AVS32389.1\|2434304_2434616_-	hypothetical protein	A0A0B5D116	Listeria_phage	2.2e-41	95.6
AVS32390.1\|2434612_2435044_-	hypothetical protein	A8ATV7	Listeria_phage	2.4e-70	95.8
AVS32391.1\|2435099_2435789_-	hypothetical protein	A0A0B5CYK8	Listeria_phage	4.9e-97	84.3
AVS32392.1\|2435793_2436165_-	hypothetical protein	A0A0B5CTY4	Listeria_phage	1.1e-63	100.0
AVS32393.1\|2436161_2436479_-	hypothetical protein	A8ATV4	Listeria_phage	1.9e-51	98.1
AVS32394.1\|2436468_2436834_-	hypothetical protein	A8ATV3	Listeria_phage	3.3e-60	90.1
AVS32395.1\|2436833_2437187_-	hypothetical protein	A8ATV2	Listeria_phage	1.1e-60	98.3
AVS32396.1\|2437356_2438229_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
AVS32397.1\|2438251_2438806_-	hypothetical protein	A8ATU9	Listeria_phage	5.1e-89	99.5
AVS32398.1\|2438901_2439942_-\|capsid	minor capsid protein	A8ATU8	Listeria_phage	1.6e-200	100.0
AVS32399.1\|2439946_2441503_-	hypothetical protein	A8ATU7	Listeria_phage	5.3e-301	99.8
AVS32400.1\|2441517_2442837_-\|terminase	PBSX family phage terminase large subunit	A8ATU6	Listeria_phage	1.5e-264	99.8
AVS32401.1\|2442829_2443570_-	TerS	A8ATU5	Listeria_phage	3.1e-134	99.2
AVS32402.1\|2443609_2443837_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	1.8e-32	94.7
AVS32403.1\|2444097_2444670_-	RNA polymerase subunit sigma-70	A0A0B5D145	Listeria_phage	3.3e-99	96.8
AVS32404.1\|2444757_2444913_-	DUF3954 domain-containing protein	A0A0B5D0E9	Listeria_phage	1.1e-22	98.0
AVS32405.1\|2445057_2445462_-	hypothetical protein	A8AU00	Listeria_phage	3.5e-71	97.8
AVS32406.1\|2445564_2445870_-	response regulator	A8ATZ8	Listeria_phage	2.5e-37	82.2
AVS32407.1\|2445901_2446384_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	2.0e-57	71.2
AVS32408.1\|2446937_2447339_-	hypothetical protein	R4ICD6	Listeria_phage	1.8e-30	52.9
AVS32409.1\|2447335_2447890_-	pentapeptide repeat-containing protein	A8ATE4	Listeria_phage	1.5e-43	92.3
AVS32410.1\|2447886_2448096_-	hypothetical protein	A8ASN7	Listeria_phage	1.6e-14	64.2
AVS32411.1\|2448270_2449233_-	DnaD domain protein	A8ASN4	Listeria_phage	3.7e-151	86.1
AVS32412.1\|2449249_2449909_-	single-stranded DNA-binding protein	A8ASN3	Listeria_phage	2.7e-92	93.2
AVS32413.1\|2449914_2450391_-	hypothetical protein	A8ASN2	Listeria_phage	7.6e-57	94.9
AVS32414.1\|2450387_2450582_-	hypothetical protein	A8ASN1	Listeria_phage	7.1e-30	100.0
AVS32415.1\|2450886_2451075_-	hypothetical protein	Q9T175	Listeria_phage	9.1e-22	80.6
AVS32416.1\|2451180_2451396_-	hypothetical protein	Q9T176	Listeria_phage	2.4e-26	88.7
AVS32417.1\|2451392_2451926_-	hypothetical protein	A8ATY1	Listeria_phage	1.3e-78	87.9
AVS32418.1\|2452050_2452830_-	phage antirepressor Ant	A8ASM6	Listeria_phage	1.8e-140	96.9
AVS32419.1\|2452971_2453436_+	hypothetical protein	A8ATX9	Listeria_phage	1.4e-79	99.4
AVS32420.1\|2453413_2453767_-	hypothetical protein	A8ATX8	Listeria_phage	9.9e-54	100.0
AVS32421.1\|2453763_2454000_-	hypothetical protein	A8ATX7	Listeria_phage	1.1e-37	100.0
AVS32422.1\|2454064_2454268_+	hypothetical protein	A0A0B5D131	Listeria_phage	9.8e-30	100.0
AVS32423.1\|2454326_2454539_-	transcriptional regulator	A0A0B5D0D3	Listeria_phage	1.1e-31	97.1
AVS32424.1\|2454704_2455127_+	helix-turn-helix domain-containing protein	A0A0B5CYL9	Listeria_phage	3.4e-69	97.1
AVS32425.1\|2455142_2455568_+	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	3.8e-76	99.3
AVS32426.1\|2455582_2456188_+	hypothetical protein	NA	NA	NA	NA
AVS32427.1\|2456243_2456774_+	hypothetical protein	A0A0B5D0D1	Listeria_phage	9.8e-05	24.7
AVS32428.1\|2456974_2458489_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
AVS32429.1\|2458549_2459908_+	recombinase family protein	Q9T193	Listeria_phage	4.9e-250	96.2

DBSCAN-SWA_7

2596442 : 2657140

Listeria_phage(87.14%)

portal,holin,terminase,capsid,tail,plate,integrase,protease

attL 2596832:2596847|attR 2637762:2637777

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS32556.1\|2596442_2596778_+	hypothetical protein	S5MNN8	Brevibacillus_phage	6.0e-16	76.6
2596832:2596847	attL	NA	NA	NA	NA
AVS32557.1\|2597029_2597233_-	hypothetical protein	A8ATX1	Listeria_phage	2.7e-32	100.0
AVS32558.1\|2597229_2597463_-	hypothetical protein	A8ATX0	Listeria_phage	3.3e-37	100.0
AVS32559.1\|2597762_2597996_+	hypothetical protein	A8ATW9	Listeria_phage	9.2e-08	48.1
AVS32560.1\|2598024_2598396_+	hypothetical protein	A0A059T5F6	Listeria_phage	5.3e-58	92.7
AVS32561.1\|2598401_2598851_+	hypothetical protein	A8ATW7	Listeria_phage	6.9e-76	99.3
AVS32562.1\|2598875_2599373_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.8e-88	97.6
AVS32563.1\|2599449_2600001_-	hypothetical protein	A8ASL6	Listeria_phage	7.4e-96	95.6
AVS32564.1\|2600494_2601340_-	peptidase M15	A0A059T7Y8	Listeria_phage	2.6e-140	95.8
AVS32565.1\|2601339_2601621_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
AVS32566.1\|2601633_2601999_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
AVS32567.1\|2602026_2602185_-	hypothetical protein	Q9T1A1	Listeria_phage	6.0e-19	100.0
AVS32568.1\|2602189_2602507_-	hypothetical protein	Q9T1A2	Listeria_phage	6.2e-55	100.0
AVS32569.1\|2602518_2603592_-\|plate	phage baseplate upper protein	Q9T1A3	Listeria_phage	4.5e-198	100.0
AVS32570.1\|2603591_2604620_-	hypothetical protein	Q9T1A4	Listeria_phage	4.6e-192	100.0
AVS32571.1\|2604620_2605646_-	hypothetical protein	Q9T1A5	Listeria_phage	8.1e-197	97.9
AVS32572.1\|2605654_2606473_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	6.8e-146	91.9
AVS32573.1\|2606474_2611859_-\|tail	tail tape measure protein	Q9T1A7	Listeria_phage	0.0e+00	89.7
AVS32574.1\|2611869_2612469_-	hypothetical protein	A0A0B5CTW0	Listeria_phage	1.9e-76	72.0
AVS32575.1\|2612474_2612897_-	hypothetical protein	Q9T1A9	Listeria_phage	2.2e-68	97.1
AVS32576.1\|2612952_2613285_-	Ig-like virion protein	Q9T1B0	Listeria_phage	7.7e-48	97.2
AVS32577.1\|2613214_2613652_-\|tail	phage tail protein	A0A0B5CYN3	Listeria_phage	7.2e-78	98.6
AVS32578.1\|2613654_2614062_-\|capsid	minor capsid protein	Q9T1B2	Listeria_phage	9.0e-67	98.5
AVS32579.1\|2614061_2614400_-\|capsid	minor capsid protein	Q9T1B3	Listeria_phage	2.9e-58	99.1
AVS32580.1\|2614399_2614762_-\|capsid	minor capsid protein	A0A059T658	Listeria_phage	6.0e-62	95.8
AVS32581.1\|2614761_2615157_-	hypothetical protein	A0A0B5D0F6	Listeria_phage	1.5e-63	96.2
AVS32582.1\|2615158_2615317_-	hypothetical protein	A8ASJ7	Listeria_phage	5.1e-18	98.1
AVS32583.1\|2615316_2616216_-\|capsid	phage major capsid protein	A0A0B5CU19	Listeria_phage	2.0e-167	99.7
AVS32584.1\|2616239_2616809_-	scaffolding protein	A0A0B5CTV7	Listeria_phage	3.1e-81	98.4
AVS32585.1\|2616887_2618027_-\|capsid	minor capsid protein	A0A0B5D147	Listeria_phage	3.2e-202	95.8
AVS32586.1\|2618032_2619523_-\|portal	phage portal protein	Q9T1C0	Listeria_phage	7.2e-279	98.2
AVS32587.1\|2619535_2620867_-\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	1.6e-250	94.1
AVS32588.1\|2620835_2621378_-\|terminase	terminase small subunit	A0A0B5CU16	Listeria_phage	3.1e-78	89.8
AVS32589.1\|2621421_2621859_-	hypothetical protein	A8ASQ1	Listeria_phage	3.3e-14	39.4
AVS32590.1\|2621947_2622505_-	hypothetical protein	A8ASQ2	Listeria_phage	1.6e-82	87.1
AVS32591.1\|2622765_2623200_-	hypothetical protein	A8ASQ1	Listeria_phage	3.0e-68	88.9
AVS32592.1\|2623363_2623747_-	DUF2481 domain-containing protein	A8ASP8	Listeria_phage	2.3e-35	56.7
AVS32593.1\|2623750_2624155_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	2.2e-57	83.6
AVS32594.1\|2624099_2624282_-	hypothetical protein	A8ASP6	Listeria_phage	2.2e-17	81.0
AVS32595.1\|2624300_2624783_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	2.0e-57	71.2
AVS32596.1\|2625336_2625738_-	hypothetical protein	R4ICD6	Listeria_phage	1.8e-30	52.9
AVS32597.1\|2625734_2626289_-	pentapeptide repeat-containing protein	A8ATE4	Listeria_phage	1.5e-43	92.3
AVS32598.1\|2626285_2626495_-	hypothetical protein	A8ASN7	Listeria_phage	1.6e-14	64.2
AVS32599.1\|2626669_2627593_-	DnaD domain protein	A8ATY7	Listeria_phage	2.3e-150	90.6
AVS32600.1\|2627612_2628428_-	recombinase RecT	Q9T172	Listeria_phage	1.7e-144	94.8
AVS32601.1\|2628430_2629390_-	hypothetical protein	Q9T173	Listeria_phage	2.8e-151	83.1
AVS32602.1\|2629621_2629810_-	hypothetical protein	Q9T175	Listeria_phage	1.2e-21	80.6
AVS32603.1\|2629914_2630151_-	DUF771 domain-containing protein	A8ATY2	Listeria_phage	1.9e-37	88.5
AVS32604.1\|2630156_2630681_-	hypothetical protein	A8ASM7	Listeria_phage	8.3e-81	90.8
AVS32605.1\|2630802_2631582_-	phage antirepressor Ant	A0A059T6E7	Listeria_phage	7.6e-139	96.5
AVS32606.1\|2631645_2631843_+	adenylate kinase	Q9T179	Listeria_phage	6.2e-21	100.0
AVS32607.1\|2631844_2632126_-	hypothetical protein	A0A0B5CTX3	Listeria_phage	1.0e-40	100.0
AVS32608.1\|2632122_2632359_-	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
AVS32609.1\|2632370_2632565_-	hypothetical protein	A0A059T6E5	Listeria_phage	6.3e-26	96.9
AVS32610.1\|2632630_2632861_+	hypothetical protein	Q9T185	Listeria_phage	2.3e-35	98.7
AVS32611.1\|2632789_2633056_-	hypothetical protein	A0A059T7Q1	Listeria_phage	2.5e-41	100.0
AVS32612.1\|2633073_2633385_+	hypothetical protein	NA	NA	NA	NA
AVS32613.1\|2633344_2633530_-	hypothetical protein	NA	NA	NA	NA
AVS32614.1\|2633550_2633784_-	XRE family transcriptional regulator	A8ASM3	Listeria_phage	1.6e-31	95.9
AVS32615.1\|2633946_2634423_+	XRE family transcriptional regulator	A8ASM2	Listeria_phage	4.5e-57	80.3
AVS32616.1\|2634578_2634746_+	hypothetical protein	NA	NA	NA	NA
AVS32617.1\|2634801_2635020_+	zinc ribbon domain-containing protein	A0A059T6E3	Listeria_phage	2.4e-26	81.9
AVS32618.1\|2635035_2635758_+	hypothetical protein	A0A059T7P9	Listeria_phage	8.7e-105	99.6
AVS32619.1\|2635778_2636486_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	3.1e-91	74.0
AVS32620.1\|2636549_2637680_+\|integrase	site-specific integrase	A8ATX2	Listeria_phage	2.3e-200	93.4
AVS32621.1\|2637955_2639392_-	chitin-binding protein	A0A2D1GD28	Mycobacterium_phage	4.4e-07	29.1
2637762:2637777	attR	NA	NA	NA	NA
AVS32622.1\|2639548_2640145_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.6e-58	57.4
AVS32623.1\|2640190_2641582_-	amino acid permease	NA	NA	NA	NA
AVS32624.1\|2641799_2642966_+	cell surface protein	NA	NA	NA	NA
AVS32625.1\|2643018_2644035_-	NADPH dehydrogenase NamA	NA	NA	NA	NA
AVS32626.1\|2644061_2645033_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
AVS32627.1\|2645040_2646009_-	gluconeogenesis factor	A1IMD5	Streptococcus_phage	6.7e-68	43.3
AVS32628.1\|2646010_2646886_-	RNase adaptor protein RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
AVS32629.1\|2646993_2648724_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.9e-175	53.8
AVS32630.1\|2648765_2649827_-	galactose mutarotase	NA	NA	NA	NA
AVS32631.1\|2649843_2650827_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.6e-51	37.2
AVS32632.1\|2650945_2651905_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7
AVS32633.1\|2651983_2653459_-	hypothetical protein	NA	NA	NA	NA
AVS32634.1\|2653544_2654042_-	acyltransferase	NA	NA	NA	NA
AVS32635.1\|2654045_2654699_-	pyrophosphatase PpaX	NA	NA	NA	NA
AVS32636.1\|2654742_2655576_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
AVS32637.1\|2655661_2656600_-	HPr kinase/phosphorylase	NA	NA	NA	NA
AVS32638.1\|2656786_2657140_-\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: CP028183.1|AVS31371.1|1335487_1335682_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP028183.1|AVS32421.1|2453763_2454000_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP028183.1|AVS32422.1|2454064_2454268_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP028183.1|AVS32616.1|2634578_2634746_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP028183.1|AVS32617.1|2634801_2635020_+|zinc-ribbon-domain-containing-protein

Click the colored protein region to show detailed information

Acr_ID: CP028183.1|AVS32612.1|2633073_2633385_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP028183.1|AVS32613.1|2633344_2633530_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP028183.1|AVS31371.1|1335487_1335682_-|hypothetical-protein

1335487_1335682_-

64 aa aa

WHTH_GntR

Identity	Hit_domain_coverage
0.4	0.9090909090909091

1261387-1364340

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP028183_2	Unclear	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	1323830-1323797	2
CP028183_2	Unclear	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	1323831-1323797	2
CP028183_4	TypeII	4.2\|2782378\|30\|CP028183\|CRISPRCasFinder,CRT	2782378-2782407	30	1305214-1305185	1
CP028183_4	TypeII	4.22\|2783699\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783699-2783728	30	1320802-1320773	2
CP028183_4	TypeII	4.23\|2782378\|27\|CP028183\|PILER-CR	2782378-2782404	27	1305214-1305188	1

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to CP028183 position: 1323830-1323797, mismatch: 2

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
***.************************ *****

2. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to CP028183 position: 1323831-1323797, mismatch: 2

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgtcatgacgaaatctagcgcttgtccaactaa	Protospacer
****.************************ *****

3. spacer 4.2|2782378|30|CP028183|CRISPRCasFinder,CRT matches to CP028183 position: 1305214-1305185, mismatch: 1

ttttcagtgacaacaacagcaccgtccatt	CRISPR spacer
ttttcagtgacaacaacagcaccatccatt	Protospacer
***********************.******

4. spacer 4.22|2783699|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 1320802-1320773, mismatch: 2

tcattgtttatcttctcccaaataaaatca	CRISPR spacer
tcattatttattttctcccaaataaaatca	Protospacer
*****.*****.******************

5. spacer 4.23|2782378|27|CP028183|PILER-CR matches to CP028183 position: 1305214-1305188, mismatch: 1

ttttcagtgacaacaacagcaccgtcc	CRISPR spacer
ttttcagtgacaacaacagcaccatcc	Protospacer
***********************.***

CP028183.1|AVS32421.1|2453763_2454000_-|hypothetical-protein

2453763_2454000_-

78 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.43103448275862066	1.0

2422687-2459908

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP028183_2	Unclear	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	2424829-2424862	0
CP028183_2	Unclear	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	2424828-2424862	0
CP028183_4	TypeII	4.12\|2783039\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783039-2783068	30	2428219-2428248	1
CP028183_4	TypeII	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	2422952-2422923	0

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to CP028183 position: 2424829-2424862, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to CP028183 position: 2424828-2424862, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

3. spacer 4.12|2783039|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 2428219-2428248, mismatch: 1

gatgccgcagcatatatatttaattgagct	CRISPR spacer
gatgccgcagcgtatatatttaattgagct	Protospacer
***********.******************

4. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 2422952-2422923, mismatch: 0

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcaacgttagggctttttttatgcaa	Protospacer
******************************

CP028183.1|AVS32422.1|2454064_2454268_+|hypothetical-protein

2454064_2454268_+

67 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.43103448275862066	1.0

2422687-2459908

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP028183_2	Unclear	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	2424829-2424862	0
CP028183_2	Unclear	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	2424828-2424862	0
CP028183_4	TypeII	4.12\|2783039\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783039-2783068	30	2428219-2428248	1
CP028183_4	TypeII	4.15\|2783237\|30\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2783237-2783266	30	2422952-2422923	0

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to CP028183 position: 2424829-2424862, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to CP028183 position: 2424828-2424862, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

3. spacer 4.12|2783039|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 2428219-2428248, mismatch: 1

gatgccgcagcatatatatttaattgagct	CRISPR spacer
gatgccgcagcgtatatatttaattgagct	Protospacer
***********.******************

4. spacer 4.15|2783237|30|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 2422952-2422923, mismatch: 0

aacctcaacgttagggctttttttatgcaa	CRISPR spacer
aacctcaacgttagggctttttttatgcaa	Protospacer
******************************

CP028183.1|AVS32616.1|2634578_2634746_+|hypothetical-protein

2634578_2634746_+

55 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.41818181818181815	0.9482758620689655

2596442-2657140

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP028183_2	Unclear	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	2601109-2601142	0
CP028183_2	Unclear	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	2600607-2600573	1
CP028183_2	Unclear	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	2601108-2601142	0
CP028183_2	Unclear	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	2600608-2600573	1
CP028183_3	Unclear	3.12\|557406\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557406-557441	36	2602838-2602803	0
CP028183_3	Unclear	3.16\|557663\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557663-557696	34	2602229-2602196	0
CP028183_4	TypeII	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	2598037-2598007	0

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to CP028183 position: 2601109-2601142, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to CP028183 position: 2600607-2600573, mismatch: 1

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to CP028183 position: 2601108-2601142, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to CP028183 position: 2600608-2600573, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 3.12|557406|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to CP028183 position: 2602838-2602803, mismatch: 0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 3.16|557663|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to CP028183 position: 2602229-2602196, mismatch: 0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 2598037-2598007, mismatch: 0

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ttgttaatgtcatttttcatcatcctttatg	Protospacer
*******************************

CP028183.1|AVS32617.1|2634801_2635020_+|zinc-ribbon-domain-containing-protein

2634801_2635020_+

72 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.41818181818181815	0.9482758620689655

2596442-2657140

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP028183_2	Unclear	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	2601109-2601142	0
CP028183_2	Unclear	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	2600607-2600573	1
CP028183_2	Unclear	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	2601108-2601142	0
CP028183_2	Unclear	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	2600608-2600573	1
CP028183_3	Unclear	3.12\|557406\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557406-557441	36	2602838-2602803	0
CP028183_3	Unclear	3.16\|557663\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557663-557696	34	2602229-2602196	0
CP028183_4	TypeII	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	2598037-2598007	0

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to CP028183 position: 2601109-2601142, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to CP028183 position: 2600607-2600573, mismatch: 1

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to CP028183 position: 2601108-2601142, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to CP028183 position: 2600608-2600573, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 3.12|557406|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to CP028183 position: 2602838-2602803, mismatch: 0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 3.16|557663|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to CP028183 position: 2602229-2602196, mismatch: 0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 2598037-2598007, mismatch: 0

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ttgttaatgtcatttttcatcatcctttatg	Protospacer
*******************************

CP028183.1|AVS32612.1|2633073_2633385_+|hypothetical-protein

2633073_2633385_+

103 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.5172413793103449	1.0

2596442-2657140

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP028183_2	Unclear	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	2601109-2601142	0
CP028183_2	Unclear	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	2600607-2600573	1
CP028183_2	Unclear	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	2601108-2601142	0
CP028183_2	Unclear	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	2600608-2600573	1
CP028183_3	Unclear	3.12\|557406\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557406-557441	36	2602838-2602803	0
CP028183_3	Unclear	3.16\|557663\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557663-557696	34	2602229-2602196	0
CP028183_4	TypeII	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	2598037-2598007	0

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to CP028183 position: 2601109-2601142, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to CP028183 position: 2600607-2600573, mismatch: 1

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to CP028183 position: 2601108-2601142, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to CP028183 position: 2600608-2600573, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 3.12|557406|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to CP028183 position: 2602838-2602803, mismatch: 0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 3.16|557663|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to CP028183 position: 2602229-2602196, mismatch: 0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 2598037-2598007, mismatch: 0

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ttgttaatgtcatttttcatcatcctttatg	Protospacer
*******************************

CP028183.1|AVS32613.1|2633344_2633530_-|hypothetical-protein

2633344_2633530_-

61 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.5172413793103449	1.0

2596442-2657140

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP028183_2	Unclear	2.3\|541277\|34\|CP028183\|PILER-CR,CRT	541277-541310	34	2601109-2601142	0
CP028183_2	Unclear	2.4\|541341\|35\|CP028183\|PILER-CR,CRT	541341-541375	35	2600607-2600573	1
CP028183_2	Unclear	2.8\|541276\|35\|CP028183\|CRISPRCasFinder	541276-541310	35	2601108-2601142	0
CP028183_2	Unclear	2.9\|541340\|36\|CP028183\|CRISPRCasFinder	541340-541375	36	2600608-2600573	1
CP028183_3	Unclear	3.12\|557406\|36\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557406-557441	36	2602838-2602803	0
CP028183_3	Unclear	3.16\|557663\|34\|CP028183\|PILER-CR,CRISPRCasFinder,CRT	557663-557696	34	2602229-2602196	0
CP028183_4	TypeII	4.7\|2782708\|31\|CP028183\|CRISPRCasFinder,CRT,PILER-CR	2782708-2782738	31	2598037-2598007	0

1. spacer 2.3|541277|34|CP028183|PILER-CR,CRT matches to CP028183 position: 2601109-2601142, mismatch: 0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 2.4|541341|35|CP028183|PILER-CR,CRT matches to CP028183 position: 2600607-2600573, mismatch: 1

gcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
gcacagtcttcacgatttcagggatggggaaaact	Protospacer
*******************.***************

3. spacer 2.8|541276|35|CP028183|CRISPRCasFinder matches to CP028183 position: 2601108-2601142, mismatch: 0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

4. spacer 2.9|541340|36|CP028183|CRISPRCasFinder matches to CP028183 position: 2600608-2600573, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

5. spacer 3.12|557406|36|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to CP028183 position: 2602838-2602803, mismatch: 0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 3.16|557663|34|CP028183|PILER-CR,CRISPRCasFinder,CRT matches to CP028183 position: 2602229-2602196, mismatch: 0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 4.7|2782708|31|CP028183|CRISPRCasFinder,CRT,PILER-CR matches to CP028183 position: 2598037-2598007, mismatch: 0

ttgttaatgtcatttttcatcatcctttatg	CRISPR spacer
ttgttaatgtcatttttcatcatcctttatg	Protospacer
*******************************

2. CP028184

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11746

Streptococcus_phage(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS33100.1\|1481_1673_+	hypothetical protein	NA	NA	NA	NA
AVS33101.1\|1679_2066_+	hypothetical protein	NA	NA	NA	NA
AVS33102.1\|2081_3341_+	type II/IV secretion system protein	NA	NA	NA	NA
AVS33103.1\|3312_4125_+	hypothetical protein	NA	NA	NA	NA
AVS33104.1\|4124_4898_+	hypothetical protein	NA	NA	NA	NA
AVS33105.1\|4898_5255_+	hypothetical protein	NA	NA	NA	NA
AVS33106.1\|5650_5893_+	hypothetical protein	NA	NA	NA	NA
AVS33107.1\|5925_6150_+	hypothetical protein	NA	NA	NA	NA
AVS33108.1\|6166_6805_+	hypothetical protein	NA	NA	NA	NA
AVS33109.1\|6816_7320_+	DUF669 domain-containing protein	NA	NA	NA	NA
AVS33110.1\|7417_7603_+	hypothetical protein	NA	NA	NA	NA
AVS33111.1\|7626_7914_+	hypothetical protein	NA	NA	NA	NA
AVS33112.1\|7999_8701_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVS33113.1\|8721_9294_+	hypothetical protein	NA	NA	NA	NA
AVS33114.1\|9304_9589_+	hypothetical protein	NA	NA	NA	NA
AVS33115.1\|9601_11746_+	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	8.1e-82	35.7

DBSCAN-SWA_2

20883 : 21924

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS33122.1\|20883_21924_+	cell wall hydrolase	A0A1S5SEZ8	Streptococcus_phage	1.9e-28	49.6

DBSCAN-SWA_3

26273 : 53441

Enterococcus_phage(15.38%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS33128.1\|26273_27038_+	Fic family protein	A0A0G3Y4Q5	Ostreid_herpesvirus	8.3e-05	27.5
AVS33129.1\|27157_27688_+	hypothetical protein	NA	NA	NA	NA
AVS33130.1\|27791_28929_+\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	4.1e-48	69.1
AVS33131.1\|28993_29329_-	XRE family transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	2.8e-05	35.0
AVS33132.1\|29502_29901_+	hypothetical protein	NA	NA	NA	NA
AVS33133.1\|29904_35955_+	helicase SNF2	A0A248SL14	Klebsiella_phage	5.5e-269	35.3
AVS33155.1\|36124_36376_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVS33134.1\|36379_37351_+	hypothetical protein	NA	NA	NA	NA
AVS33135.1\|37573_37915_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
AVS33136.1\|37908_38151_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AVS33137.1\|38211_38463_-	hypothetical protein	NA	NA	NA	NA
AVS33138.1\|38593_38920_+	hypothetical protein	A0A2K9V3N4	Faecalibacterium_phage	3.2e-06	40.8
AVS33139.1\|38919_39582_+	DUF2786 domain-containing protein	NA	NA	NA	NA
AVS33140.1\|39594_39978_+	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.2e-14	53.4
AVS33141.1\|40136_40625_+	hypothetical protein	NA	NA	NA	NA
AVS33156.1\|41227_43405_+	hypothetical protein	A0A1B1IUG5	uncultured_Mediterranean_phage	2.0e-19	25.0
AVS33142.1\|43618_44227_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.0e-21	42.9
AVS33143.1\|44216_44444_+	hypothetical protein	NA	NA	NA	NA
AVS33144.1\|44563_44842_-	hypothetical protein	NA	NA	NA	NA
AVS33145.1\|44804_45041_+	XRE family transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	6.7e-14	53.4
AVS33146.1\|45468_47583_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.4e-117	39.1
AVS33147.1\|47858_49199_+\|transposase	IS3 family transposase	A0A0C5AC89	Paenibacillus_phage	1.1e-31	38.6
AVS33157.1\|49373_50108_+	ParA family protein	NA	NA	NA	NA
AVS33148.1\|50312_50657_+	hypothetical protein	NA	NA	NA	NA
AVS33149.1\|50644_51925_+	excinuclease ABC subunit A	O64031	Bacillus_phage	4.0e-92	45.1
AVS33150.1\|52297_52630_-	hypothetical protein	NA	NA	NA	NA
AVS33158.1\|52622_53441_-	ParA family protein	F0PIG8	Enterococcus_phage	5.7e-52	42.2

DBSCAN-SWA_4

56748 : 60861

Salmonella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS33152.1\|56748_59664_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.2e-174	36.7
AVS33153.1\|59667_60222_-	resolvase	A0A0F7LA37	Escherichia_phage	7.0e-38	53.4
AVS33154.1\|60501_60861_+	cadmium resistance transcriptional regulator CadC	E4ZFI8	Streptococcus_phage	3.1e-26	50.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028183

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

2. CP028184

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection