CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025218	Salmonella enterica subsp. enterica serovar Tennessee strain ATCC 10722 chromosome, complete genome	0 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1150284 : 1248660

Cronobacter_phage(47.73%)

capsid,tail,terminase,head,transposase,tRNA,portal,holin,integrase

attL 1144838:1144854|attR 1210499:1210515

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1144838:1144854	attL	NA	NA	NA	NA
AVV18172.1\|1150284_1151445_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.0e-38	37.0
AVV18173.1\|1151557_1152064_-	HNH endonuclease	NA	NA	NA	NA
AVV18174.1\|1153824_1154310_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.0e-70	84.5
AVV18175.1\|1155476_1155692_+	late control protein B	Q53ZE7	Salmonella_virus	3.6e-22	70.8
AVV21535.1\|1156242_1157406_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AVV18176.1\|1157413_1159594_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
AVV18177.1\|1159590_1161000_-	type I secretion protein TolC	NA	NA	NA	NA
AVV18178.1\|1161064_1172539_-	Ig-like domain repeat protein	NA	NA	NA	NA
AVV21536.1\|1173158_1173641_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AVV18179.1\|1173790_1174267_+	ubiquinone-binding protein	NA	NA	NA	NA
AVV18180.1\|1174256_1174547_+	RnfH family protein	NA	NA	NA	NA
AVV18181.1\|1174712_1175051_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AVV18182.1\|1175199_1176861_-	DNA repair protein RecN	NA	NA	NA	NA
AVV21538.1\|1176946_1177825_-	NAD(+) kinase	NA	NA	NA	NA
AVV21537.1\|1177948_1178539_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AVV18183.1\|1178573_1179179_-	cytoplasmic protein	NA	NA	NA	NA
AVV18184.1\|1179299_1180541_-	magnesium/cobalt efflux protein	NA	NA	NA	NA
AVV18185.1\|1180605_1181397_-	inner membrane protein YpjD	NA	NA	NA	NA
AVV18186.1\|1181342_1181639_-	hypothetical protein	NA	NA	NA	NA
AVV18187.1\|1181562_1182924_+	signal recognition particle protein	NA	NA	NA	NA
AVV18188.1\|1183176_1183425_+	30S ribosomal protein S16	NA	NA	NA	NA
AVV21539.1\|1183443_1183992_+	ribosome maturation factor RimM	NA	NA	NA	NA
AVV18189.1\|1184036_1184804_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AVV18190.1\|1184844_1185192_+	50S ribosomal protein L19	NA	NA	NA	NA
AVV18191.1\|1185348_1186569_-	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
AVV18192.1\|1186561_1187080_-	DUF4154 domain-containing protein	NA	NA	NA	NA
AVV18193.1\|1187519_1188590_+	phospho-2-dehydro-3-deoxyheptonate aldolase Tyr-sensitive	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AVV18194.1\|1188599_1189721_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AVV18195.1\|1189778_1190687_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AVV18196.1\|1190647_1191808_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AVV21540.1\|1191907_1191955_-	hypothetical protein	NA	NA	NA	NA
AVV18197.1\|1192118_1193138_-\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	1.4e-108	58.2
AVV18198.1\|1193177_1193483_-	XRE family transcriptional regulator	A0A0M5M1I9	Salmonella_phage	1.6e-15	47.5
AVV18199.1\|1193580_1193919_+	hypothetical protein	NA	NA	NA	NA
AVV18200.1\|1193944_1194277_+	hypothetical protein	NA	NA	NA	NA
AVV18201.1\|1194286_1194856_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.5e-43	47.4
AVV18202.1\|1194858_1195077_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	2.8e-06	45.0
AVV18203.1\|1195116_1197771_+	bifunctional DNA primase/helicase	A0A077K8T2	Ralstonia_phage	8.1e-241	46.5
AVV18204.1\|1197908_1198868_+	hypothetical protein	NA	NA	NA	NA
AVV18205.1\|1198913_1199243_-	transcriptional regulator	F1BUM8	Cronobacter_phage	1.5e-27	57.1
AVV18206.1\|1199242_1200262_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.1e-134	68.2
AVV18207.1\|1200258_1202043_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.3e-247	69.5
AVV18208.1\|1202186_1203023_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	4.8e-46	49.2
AVV18209.1\|1203057_1204086_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.3e-133	71.6
AVV18210.1\|1204097_1204796_+\|terminase	terminase	F1BUM0	Cronobacter_phage	8.0e-63	52.6
AVV18211.1\|1204894_1205347_+\|head	head completion protein	F1BUL8	Cronobacter_phage	1.2e-48	64.7
AVV18212.1\|1205343_1205826_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	3.0e-37	48.7
AVV18213.1\|1205822_1206527_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.5e-69	59.1
AVV18214.1\|1206523_1207651_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.8e-173	82.7
AVV18215.1\|1207647_1208103_+	DUF2597 domain-containing protein	F1BUL4	Cronobacter_phage	1.7e-58	71.5
AVV18216.1\|1208115_1208412_+\|holin	holin	C7BGD7	Burkholderia_phage	2.4e-16	48.2
AVV18217.1\|1208408_1208750_+	hypothetical protein	F1BUL3	Cronobacter_phage	2.2e-50	91.1
AVV18218.1\|1208749_1209082_+	hypothetical protein	F1BUL2	Cronobacter_phage	7.4e-35	69.1
AVV18219.1\|1209008_1209242_+	hypothetical protein	F1BUL1	Cronobacter_phage	5.0e-30	81.8
AVV18220.1\|1209219_1209486_+	hypothetical protein	A5X9I7	Aeromonas_virus	2.4e-20	61.0
AVV18221.1\|1209673_1211641_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	5.0e-272	70.8
1210499:1210515	attR	NA	NA	NA	NA
AVV18222.1\|1211637_1211967_+	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	3.2e-38	71.4
AVV18223.1\|1211963_1213148_+	hypothetical protein	F1BUK6	Cronobacter_phage	7.4e-178	78.1
AVV18224.1\|1213134_1213728_+	hypothetical protein	F1BUK5	Cronobacter_phage	2.7e-88	81.0
AVV18225.1\|1213737_1215843_+\|tail	phage tail protein	S4TP62	Salmonella_phage	9.0e-219	76.0
AVV18226.1\|1215855_1216410_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.2e-98	97.8
AVV18227.1\|1216399_1217125_+	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
AVV18228.1\|1217096_1217642_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
AVV18229.1\|1217641_1219345_+	hypothetical protein	F1BUJ7	Cronobacter_phage	3.2e-222	81.1
AVV18230.1\|1219243_1219615_-	hypothetical protein	NA	NA	NA	NA
AVV18231.1\|1220462_1221935_+	hypothetical protein	NA	NA	NA	NA
AVV18232.1\|1222070_1222457_-	hypothetical protein	NA	NA	NA	NA
AVV18233.1\|1222614_1222953_-	ribosomal subunit interface protein	NA	NA	NA	NA
AVV18234.1\|1223224_1223962_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AVV18235.1\|1224093_1225074_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AVV18236.1\|1225070_1225802_+	laccase domain-containing protein	NA	NA	NA	NA
AVV18237.1\|1225931_1228505_+	chaperone protein ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
AVV18238.1\|1228700_1228901_-	hypothetical protein	NA	NA	NA	NA
AVV18239.1\|1234459_1234915_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	8.6e-34	49.3
AVV18240.1\|1235018_1236320_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.0e-43	30.1
AVV18241.1\|1236316_1236640_-	hypothetical protein	NA	NA	NA	NA
AVV18242.1\|1236684_1238040_-	phosphatidylserine synthase	NA	NA	NA	NA
AVV18243.1\|1238154_1240815_-	protein lysine acetyltransferase Pat	NA	NA	NA	NA
AVV18244.1\|1240868_1241549_-	DTW domain-containing protein	NA	NA	NA	NA
AVV18245.1\|1241621_1242041_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
AVV18246.1\|1242244_1243282_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AVV18247.1\|1243397_1244087_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AVV18248.1\|1244405_1244789_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AVV18249.1\|1244850_1245438_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
AVV18250.1\|1245540_1246440_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVV18251.1\|1246457_1247792_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AVV18252.1\|1247922_1248660_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1471977 : 1548025

106

Salmonella_phage(68.35%)

capsid,lysis,terminase,tail,head,tRNA,portal,integrase,protease

attL 1477512:1477528|attR 1554375:1554391

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV18446.1\|1471977_1472916_+\|protease	outer membrane protease PgtE	NA	NA	NA	NA
AVV18447.1\|1472937_1473168_-	hypothetical protein	C6ZR23	Salmonella_phage	5.7e-10	79.5
AVV18448.1\|1473177_1473381_-	hypothetical protein	C6ZR24	Salmonella_phage	1.2e-32	98.5
AVV18449.1\|1473538_1473811_-	hypothetical protein	A0A2H4FNB3	Salmonella_phage	5.0e-37	96.7
AVV21547.1\|1473810_1474068_-	hypothetical protein	A5LH60	Enterobacteria_phage	4.9e-42	96.0
AVV18450.1\|1474426_1474744_-	hypothetical protein	Q5G8V1	Enterobacteria_phage	1.2e-29	61.1
AVV18451.1\|1474754_1475510_-	hypothetical protein	H6WRY1	Salmonella_phage	4.2e-150	99.6
AVV18452.1\|1475509_1475935_-	hypothetical protein	A0A2H4FRZ0	Salmonella_phage	2.2e-39	53.9
AVV18453.1\|1475931_1476447_-	hypothetical protein	E7C9P6	Salmonella_phage	1.4e-19	47.3
AVV18454.1\|1476443_1476617_-	DUF2737 domain-containing protein	A0A2H4FUQ1	Salmonella_phage	5.6e-26	98.2
AVV18455.1\|1476627_1476921_-	RecBCD nuclease inhibitor	C6ZR34	Salmonella_phage	4.5e-44	88.7
AVV18456.1\|1476936_1477485_-	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	1.0e-105	99.5
AVV18457.1\|1477493_1478000_-	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	8.6e-91	98.8
1477512:1477528	attL	NA	NA	NA	NA
AVV18458.1\|1478000_1478708_-	recombinase	E7C9Q0	Salmonella_phage	1.0e-137	97.9
AVV18459.1\|1478716_1478905_-	hypothetical protein	C6ZR38	Salmonella_phage	1.3e-28	100.0
AVV18460.1\|1478901_1479015_-	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	7.8e-13	100.0
AVV18461.1\|1479007_1479169_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	E7C9Q3	Salmonella_phage	4.9e-24	100.0
AVV18462.1\|1479518_1479797_-	hypothetical protein	K7PHN6	Enterobacterial_phage	1.5e-44	98.9
AVV18463.1\|1479836_1480037_-	restriction endonuclease	A0A0K2FJE6	Enterobacteria_phage	7.1e-33	98.5
AVV21548.1\|1479968_1480175_+	hypothetical protein	NA	NA	NA	NA
AVV18464.1\|1480339_1480618_-	hypothetical protein	C6ZR42	Salmonella_phage	1.3e-45	100.0
AVV18465.1\|1480651_1481152_-	HNH endonuclease	A5H1L2	Xanthomonas_virus	1.4e-32	44.5
AVV18466.1\|1481229_1481592_-	antitermination protein	C6ZR44	Salmonella_phage	5.8e-57	93.3
AVV18467.1\|1481959_1482169_+	fumarate hydratase FumD	I6R0R9	Salmonella_phage	2.2e-29	95.7
AVV18468.1\|1482310_1483069_-	DUF1828 domain-containing protein	NA	NA	NA	NA
AVV18469.1\|1483065_1483602_-	hypothetical protein	NA	NA	NA	NA
AVV18470.1\|1483696_1484350_-	phage repressor	I6R0S2	Salmonella_phage	3.3e-127	99.1
AVV18471.1\|1484459_1484669_+	XRE family transcriptional regulator	I6S1U2	Salmonella_phage	2.1e-35	100.0
AVV18472.1\|1484799_1485090_+	hypothetical protein	I6RSP4	Salmonella_phage	1.3e-43	96.9
AVV18473.1\|1485251_1485950_+	replication protein	A0A0P0ZC04	Stx2-converting_phage	3.2e-56	57.7
AVV18474.1\|1486060_1486552_+	endodeoxyribonuclease	A0A2I7QYB0	Vibrio_phage	2.2e-27	45.2
AVV21549.1\|1486548_1488429_+	bifunctional DNA primase/helicase	Q5G8S8	Enterobacteria_phage	0.0e+00	98.6
AVV18475.1\|1488429_1488708_+	hypothetical protein	Q5G8S7	Enterobacteria_phage	2.1e-46	94.6
AVV18476.1\|1488779_1489052_+	DUF4752 domain-containing protein	A0A220NQX8	Salmonella_phage	1.0e-42	98.9
AVV18477.1\|1489061_1489271_+	hypothetical protein	A0A1R3Y5S8	Salmonella_virus	5.9e-30	95.7
AVV18478.1\|1489282_1489612_+	hypothetical protein	K7PHN9	Enterobacterial_phage	4.6e-37	67.7
AVV18479.1\|1489568_1490015_+	recombination protein NinB	I6R0N7	Salmonella_phage	7.8e-80	97.3
AVV18480.1\|1490190_1490592_+	hypothetical protein	G9L690	Escherichia_phage	7.1e-64	86.5
AVV18481.1\|1490584_1490761_+	protein ninF	K7P6R5	Enterobacteria_phage	1.4e-24	93.0
AVV18482.1\|1490753_1490990_+	hypothetical protein	C6ZR59	Salmonella_phage	4.3e-37	94.9
AVV18483.1\|1490970_1491441_+	hypothetical protein	C6ZR60	Salmonella_phage	2.2e-88	95.5
AVV18484.1\|1491428_1491611_+	hypothetical protein	C6ZR61	Salmonella_phage	7.2e-24	98.3
AVV18485.1\|1491607_1491850_+	hypothetical protein	A0A1V0E5R3	Salmonella_phage	5.8e-37	93.8
AVV18486.1\|1492007_1492787_+	antitermination protein	Q76H66	Enterobacteria_phage	1.2e-128	95.3
AVV18487.1\|1493208_1493412_+	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
AVV21550.1\|1493389_1493887_+	lysozyme	A0A1R3Y5W5	Salmonella_virus	7.9e-89	96.4
AVV18488.1\|1493883_1494342_+\|lysis	lysis protein	A0A2L1IV55	Escherichia_phage	4.3e-57	78.8
AVV18489.1\|1494551_1495049_+	DNA-binding protein	S4TSR0	Salmonella_phage	8.1e-94	100.0
AVV18490.1\|1495045_1495303_+	hypothetical protein	A0A1V0E5Q1	Salmonella_phage	3.8e-39	100.0
AVV18491.1\|1495447_1495993_-	hypothetical protein	S4TR57	Salmonella_phage	5.0e-97	100.0
AVV18492.1\|1496069_1496405_+	hypothetical protein	S4TTH3	Salmonella_phage	8.0e-61	100.0
AVV18493.1\|1496525_1497299_+	DUF1983 domain-containing protein	S4TNN5	Salmonella_phage	3.1e-124	97.7
AVV18494.1\|1497308_1498766_+	glycosyltransferase family 2 protein	S4TSQ9	Salmonella_phage	2.3e-290	99.6
AVV18495.1\|1498809_1499328_+	HNH endonuclease	K7PJS8	Enterobacterial_phage	1.3e-46	54.3
AVV18496.1\|1499308_1499902_+	hypothetical protein	S4TR53	Salmonella_phage	1.2e-112	96.9
AVV18497.1\|1499894_1500260_+	HNH endonuclease	S4TTG9	Salmonella_phage	4.3e-52	82.9
AVV18498.1\|1500261_1500477_+	hypothetical protein	NA	NA	NA	NA
AVV18499.1\|1500570_1501065_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
AVV18500.1\|1501061_1502723_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	99.6
AVV18501.1\|1502781_1504716_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	99.8
AVV18502.1\|1504920_1506276_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	2.6e-259	99.1
AVV18503.1\|1506272_1507316_+\|portal	phage portal protein	S4TNN1	Salmonella_phage	1.2e-115	91.1
AVV18504.1\|1507312_1507639_+\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	2.2e-55	100.0
AVV18505.1\|1507647_1507998_+\|head,tail	head-tail adaptor protein	S4TND9	Salmonella_phage	1.7e-58	100.0
AVV18506.1\|1507994_1508444_+	hypothetical protein	S4TR46	Salmonella_phage	1.5e-75	100.0
AVV18507.1\|1508440_1508788_+	DUF3168 domain-containing protein	S4TTG3	Salmonella_phage	1.7e-58	100.0
AVV18508.1\|1508843_1509548_+\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	6.7e-94	75.6
AVV18509.1\|1509575_1509965_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	7.3e-58	85.3
AVV18510.1\|1509973_1510252_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.7e-37	87.0
AVV18511.1\|1510308_1510644_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	5.7e-43	76.6
AVV18512.1\|1510690_1514002_+\|tail	phage tail tape measure protein	S4TTF9	Salmonella_phage	0.0e+00	81.9
AVV18513.1\|1514239_1514437_-	hypothetical protein	H6WRV6	Salmonella_phage	5.6e-30	100.0
AVV18514.1\|1514604_1515198_+	hypothetical protein	S4TSP7	Salmonella_phage	1.9e-105	93.9
AVV18515.1\|1515197_1515782_+	hypothetical protein	S4TND4	Salmonella_phage	3.2e-105	97.4
AVV18516.1\|1515788_1516187_+	hypothetical protein	S4TR39	Salmonella_phage	1.5e-69	93.9
AVV18517.1\|1516186_1518907_+\|tail	phage tail protein	S4TTF5	Salmonella_phage	0.0e+00	98.6
AVV18518.1\|1518915_1519875_+	hypothetical protein	H6WRW5	Salmonella_phage	9.6e-184	100.0
AVV18519.1\|1519885_1521184_+\|tail	phage tail protein	I6R0Q9	Salmonella_phage	1.2e-245	99.3
AVV18520.1\|1521255_1522425_-\|integrase	integrase	I6R0M2	Salmonella_phage	7.7e-228	99.0
AVV18521.1\|1522738_1523680_-	hypothetical protein	E7DYY8	Enterobacteria_phage	1.4e-147	88.2
AVV18522.1\|1523968_1524724_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AVV18523.1\|1524784_1526098_-	long-chain fatty acid transporter FadL	NA	NA	NA	NA
AVV21551.1\|1526126_1526360_+	hypothetical protein	NA	NA	NA	NA
AVV18524.1\|1526462_1526747_+	hypothetical protein	NA	NA	NA	NA
AVV18525.1\|1526924_1528235_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AVV18526.1\|1528234_1530382_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AVV18527.1\|1530590_1531076_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
AVV18528.1\|1531175_1531727_-	endonuclease SmrB	NA	NA	NA	NA
AVV18529.1\|1531892_1532825_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AVV18530.1\|1532860_1533946_+	chorismate synthase	A0A291AU41	Pandoravirus	1.6e-89	47.5
AVV18531.1\|1533949_1534774_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AVV18532.1\|1534773_1535583_+	hypothetical protein	NA	NA	NA	NA
AVV18533.1\|1535582_1536131_+	elongation factor P hydroxylase	NA	NA	NA	NA
AVV18534.1\|1536163_1536439_+	YfcL family protein	NA	NA	NA	NA
AVV18535.1\|1536490_1538551_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AVV18536.1\|1538650_1539865_+	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA
AVV18537.1\|1539962_1540619_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVV18538.1\|1540685_1541204_-	DUF3828 domain-containing protein	NA	NA	NA	NA
AVV18539.1\|1541203_1541572_-	hypothetical protein	H6SUH4	Campylobacter_virus	3.9e-08	37.9
AVV18540.1\|1541740_1541989_-	transcriptional regulator	A0A0M4UV99	Ralstonia_phage	3.1e-17	58.6
AVV18541.1\|1542161_1542536_+	hypothetical protein	NA	NA	NA	NA
AVV18542.1\|1542715_1543894_+	arabinose transporter	NA	NA	NA	NA
AVV18543.1\|1543890_1544892_-	flagella biosynthesis regulator	NA	NA	NA	NA
AVV18544.1\|1544995_1546132_+	erythronate-4-phosphate dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	3.8e-22	29.1
AVV18545.1\|1546199_1547213_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AVV18546.1\|1547212_1548025_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
1554375:1554391	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1761263 : 1770434

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV18739.1\|1761263_1762211_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AVV18740.1\|1762194_1762926_+	ABC transporter permease	NA	NA	NA	NA
AVV18741.1\|1762906_1763014_-	hypothetical protein	NA	NA	NA	NA
AVV18742.1\|1763073_1763805_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AVV18743.1\|1764027_1765713_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AVV18744.1\|1765709_1766429_+	DNA-binding response regulator	NA	NA	NA	NA
AVV18745.1\|1766475_1766943_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AVV18746.1\|1767701_1768160_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AVV18747.1\|1768400_1770434_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.4e-54	27.6

DBSCAN-SWA_4

1964413 : 1971640

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV18919.1\|1964413_1964833_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AVV18920.1\|1964835_1966104_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.7e-225	91.7
AVV18921.1\|1966549_1966762_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AVV21569.1\|1966772_1966961_+	cold-shock protein	NA	NA	NA	NA
AVV18922.1\|1967221_1968400_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	6.6e-110	57.2
AVV18923.1\|1969049_1969361_+	hypothetical protein	NA	NA	NA	NA
AVV18924.1\|1969440_1970136_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	28.2
AVV18925.1\|1970209_1971640_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

4360124 : 4407181

Burkholderia_phage(36.36%)

plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV21129.1\|4360124_4361123_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AVV21130.1\|4361210_4362521_-	conjugal transfer protein	NA	NA	NA	NA
AVV21131.1\|4362767_4363283_+	transcriptional regulator Zur	NA	NA	NA	NA
AVV21132.1\|4363382_4363592_-	CsbD family protein	NA	NA	NA	NA
AVV21666.1\|4363613_4363727_-	hypothetical protein	NA	NA	NA	NA
AVV21133.1\|4363723_4365049_-	MATE family efflux transporter	NA	NA	NA	NA
AVV21134.1\|4365227_4365836_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AVV21135.1\|4365944_4366313_-	diacylglycerol kinase	NA	NA	NA	NA
AVV21136.1\|4366483_4368904_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AVV21137.1\|4369002_4369875_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AVV21138.1\|4369888_4370386_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AVV21139.1\|4370566_4371484_-	maltose operon protein MalM	NA	NA	NA	NA
AVV21140.1\|4371647_4373006_-	maltoporin	NA	NA	NA	NA
AVV21141.1\|4373094_4374204_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AVV21142.1\|4374565_4375756_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
AVV21143.1\|4375887_4377432_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AVV21144.1\|4377446_4378337_+	maltose ABC transporter permease	NA	NA	NA	NA
AVV21145.1\|4378502_4378913_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AVV21146.1\|4379055_4381152_-	YjbH domain-containing protein	NA	NA	NA	NA
AVV21147.1\|4381151_4381889_-	hypothetical protein	NA	NA	NA	NA
AVV21148.1\|4381885_4382524_-	YjbF family lipoprotein	NA	NA	NA	NA
AVV21149.1\|4382587_4382830_-	outer membrane protein	NA	NA	NA	NA
AVV21150.1\|4383273_4384923_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AVV21151.1\|4385267_4386617_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AVV21152.1\|4386747_4387095_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AVV21153.1\|4387671_4387959_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
AVV21154.1\|4387961_4388567_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	2.7e-59	59.4
AVV21155.1\|4388579_4388894_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AVV21156.1\|4389053_4389509_+	hypothetical protein	NA	NA	NA	NA
AVV21157.1\|4389505_4389703_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AVV21158.1\|4389692_4391120_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	71.2
AVV21159.1\|4391119_4391644_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AVV21160.1\|4391695_4392013_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AVV21161.1\|4391972_4392101_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AVV21162.1\|4392197_4394552_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.8e-66	30.9
AVV21163.1\|4394551_4395505_+	chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AVV21667.1\|4395504_4395714_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AVV21164.1\|4395701_4396745_+	phage protein D	A4JWL3	Burkholderia_virus	1.5e-76	45.9
AVV21165.1\|4396754_4397477_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
AVV21166.1\|4397485_4397728_+	hypothetical protein	NA	NA	NA	NA
AVV21167.1\|4397803_4398166_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
AVV21168.1\|4398162_4399092_+	glycosyltransferase	S5FKN0	Shigella_phage	6.7e-150	83.8
AVV21169.1\|4399091_4400639_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AVV21170.1\|4400802_4401162_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AVV21171.1\|4401152_4402268_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	4.1e-101	51.7
AVV21172.1\|4402260_4402893_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
AVV21173.1\|4402895_4404653_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.2e-51	51.7
AVV21174.1\|4404657_4405263_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AVV21175.1\|4405259_4405715_+	hypothetical protein	NA	NA	NA	NA
AVV21176.1\|4406452_4407181_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage