CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025222	Listeria monocytogenes strain ATCC 51775 chromosome, complete genome	2 crisprs	DinG,cas3,WYL,casR,DEDDh,csa3,csn2,cas2,cas1,cas9	2	10	6	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP025222_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025222_3

2568005-2568166

Orphan

Consensus_repeat	Method
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of CP025222_3

>merge|CP025222|3|2568005-2568166|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGGGATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACTTTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

>CP025222|3|2|2568005-2568166|CRISPRCasFinder
TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	GATTGGTTGAATTTAATAATTTGTGCTTCCCTTTTCGGGTTGTTCGTCCACT
TTTTTTAATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP025222.1\|AVV07856.1\|2567131_2567878_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
CP025222.1\|AVV07865.1\|2576759_2577806_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
CP025222.1\|AVV07861.1\|2572055_2573588_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP025222.1\|AVV08335.1\|2570351_2570525_-\|hypothetical-protein	unknown	unknown	unknown
CP025222.1\|AVV07859.1\|2569499_2570219_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP025222.1\|AVV07863.1\|2574390_2575581_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP025222.1\|AVV07854.1\|2564236_2564701_-\|SsrA-binding-protein	unknown	unknown	gnl\|CDD\|376590
CP025222.1\|AVV07853.1\|2563272_2564181_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP025222.1\|AVV07852.1\|2559615_2562891_-\|glycosyl-hydrolase-family-31	unknown	unknown	gnl\|CDD\|224418
CP025222.1\|AVV07864.1\|2575715_2576726_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
CP025222.1\|AVV07849.1\|2553295_2553715_-\|hypothetical-protein	unknown	unknown	unknown
CP025222.1\|AVV07860.1\|2570627_2571920_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP025222.1\|AVV07850.1\|2554664_2558597_-\|glycosyl-hydrolase-family-31	unknown	unknown	gnl\|CDD\|224418
CP025222.1\|AVV07862.1\|2573589_2574345_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP025222.1\|AVV07857.1\|2568240_2568474_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
CP025222.1\|AVV07847.1\|2551609_2552506_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP025222.1\|AVV07855.1\|2564716_2567098_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
CP025222.1\|AVV07848.1\|2552550_2553120_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
CP025222.1\|AVV07851.1\|2558611_2559556_-\|lmo2445-family-class-3-internalin	unknown	unknown	gnl\|CDD\|275380
CP025222.1\|AVV07858.1\|2568573_2569317_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561

Protein	Function_ID	Function_description	E-value
CP025222.1\|AVV07856.1\|2567131_2567878_-\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	3.8639e-136
CP025222.1\|AVV07861.1\|2572055_2573588_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP025222.1\|AVV07859.1\|2569499_2570219_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.44979e-18
CP025222.1\|AVV07863.1\|2574390_2575581_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP025222.1\|AVV07854.1\|2564236_2564701_-\|SsrA-binding-protein	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	2.29197e-92
CP025222.1\|AVV07853.1\|2563272_2564181_+\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.61922e-08
CP025222.1\|AVV07852.1\|2559615_2562891_-\|glycosyl-hydrolase-family-31	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
CP025222.1\|AVV07864.1\|2575715_2576726_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP025222.1\|AVV07851.1\|2558611_2559556_-\|lmo2445-family-class-3-internalin	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.15574e-06
CP025222.1\|AVV07865.1\|2576759_2577806_-\|transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	4.30628e-92
CP025222.1\|AVV07850.1\|2554664_2558597_-\|glycosyl-hydrolase-family-31	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
CP025222.1\|AVV07862.1\|2573589_2574345_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.345e-145
CP025222.1\|AVV07857.1\|2568240_2568474_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.04836e-13
CP025222.1\|AVV07847.1\|2551609_2552506_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.43734e-71
CP025222.1\|AVV07855.1\|2564716_2567098_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
CP025222.1\|AVV07848.1\|2552550_2553120_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.8348e-39
CP025222.1\|AVV07860.1\|2570627_2571920_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP025222.1\|AVV07858.1\|2568573_2569317_-\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.94931e-122

>CP025222.1|AVV07856.1|2567131_2567878_-|carboxylesterase
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
>CP025222.1|AVV07855.1|2564716_2567098_-|ribonuclease-R
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPIDKTRNFKSSSKNNRNKRRTGKSEDVKPKTERKDDEWYTKPKKKKKKKPFYQGVAKESPKKKKRR
>CP025222.1|AVV07854.1|2564236_2564701_-|SsrA-binding-protein
MPKGDGKLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKDGYAKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKERQQ
>CP025222.1|AVV07853.1|2563272_2564181_+|transcriptional-regulator
MQNIGDTLKFIRKSKNLTQQETCTNALSRSNYQKIENNKIMPSMDRFIQILLNFNMTLEEFEFVKRDFTPSPKENILYLYSKIITSSETDILLDVISKCDDYLANQNDIFISDIKASLEGILLAEKEHNFELAREKVAYIWDRLSEADELFWNDILILRNIFFIFENETAQHIVNRLISQLKKYRYLYPTLSIEISLHVNRATYLILDEEYELALHYIELSIKIAKHNHYYLQFCMAVAKKGIVLYKLDQKQQGKHFMQRALRVAKVLEEERILNGIKNEIDYFLHDELQDLSLNEFTKIDI
>CP025222.1|AVV07852.1|2559615_2562891_-|glycosyl-hydrolase-family-31
MKRRTRKCSLVFILGILIFSCLSGFGTNVFAMDGEYHSPYGDDDLYTVQPTERSPRDPKAGEDVILNITTWPIENGQDVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNMTATAGDFSPKLYLSFEDLDTLRMELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRMEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFMTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGMYVNSDFHSQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGMVDSVHDAGMNIVLWQVPVLKDDGTVYEQRDNDEEYMISRGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEMVWGRDTTFSNGEKGQEMRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDMAGFTGDYPTAELYKRATAMAAFAPIMQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNLLPYIYTAAKDTADNGKSMMRQMAMDYPEDVNARDLDEQYMFGDDLLVAPIVQEGQTEKEVYLPEGEWVDIWNGGVHPGGETISYYADVDTLPVFAKAGAIIPMNMTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADETTMQVFSTEPTSVTIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFGHLTNVTTASDHAGYTGTGFVAGFDAEKEAVEFDIDAVDGASDYTMEVRYSAGVEDATRTVYINGKKQQITLPKTANWDTWNTVEVPVTLQAGNNQVVFDFEADDTAGINFDHVVIKK
>CP025222.1|AVV07851.1|2558611_2559556_-|lmo2445-family-class-3-internalin
MKKIIGLTFVAICCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTAIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNNIGELPDLSEALPALENIEANGANITVFPDANYPNLTNVDLSQNNFGFNIPKFVGMEGLVSINMENAGLSGYIAEDIWMNMPNLDSLILNENHLISIPEDIFLSQQLGTHSFANQTATYPPTTIKQGENLKVFVPFIYQALDFIAPSNHDLIIIKDNGRTLYEPPYPTYDGSYMYTIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE
>CP025222.1|AVV07850.1|2554664_2558597_-|glycosyl-hydrolase-family-31
MKKGMKQVCVSLAVVPLVWLNLGITQPLQVEVKAEETKKKETQKKANTETAKQLSKEEYAKLSAEEGLGNVLEATVTDNVITLKIDNGDEAEDDYLEISPLANNLLKVNLRPRNIENSPSTPMIDPNATFTAIGATIDLESDPMIISTDECTLEIDKEPARMTFKDKNGKTLLSESADGGIFDGGVRFKRGASDHVYGAYGISFSDGDLGMERDDTAADSNKTAQAGQQGNAGGPFMWSTAGYGLLVDSDGGYPYSVSDEEKLEFYYGDTIVEGRRYVKENVEMYLMSGEPEEIMSSYADVTGHTPMMPKWSLGFSNFEWGTNEAEFRENINTYRAKGIPIDSFAFDYDWKFYGDPTYGGDYGEFAWNTENFPSAKDTTLKSDMDALGVKMIGITKPRVVTNLEDGTATQQGKDADANGYWYPGQSAYEDYAFPVTVRSIDPYNADERNWWWSHSEDALDKGIVGWWNDETDKVSSNGADYWFGNFTTGFTSEAMYEGQRDYTNERVWQTGRTFYPGAQRYSTSTWSGDIGVQWKKGEVIDWANGMQEQPSTMLSTINLGQTKWGMDTGGFNANSGQVLNPDPELYSRWMEFSSLVPVFRTHGNQNQQRQPWFYGGTAEEVAKSSMTWRYSMIPYMYAYERQAYDSGVGLVQPLTFDNPTDENVVNLTDEWMFGDGLLAAPVLEEGAGSRDIYLPAGTWIDYNRGDVYEGNQTINYEVNDDDWTDVPMFVKQGAIMPMQQPQNYVGESAVKTIYLDTFASDKETSFTHYDDDGKSFDYEKDTYLKQKMTTSKTADTSTFTIGAKEGSYKADTENYIVKLHGNAAESVQVNGADSKVYDDLSALENADGSGYAVGSDVYGAVTYVKVPAQADADTVITTSGSASIVQTGTYEMETGSNFADTVADKPVAEKTYVDGYDKDGAGTTIYANVKDSGDYNVDLTYKNASSDNQALSIFVNGEYVKQTTLKPNTDWSVQSEALPLSAGKNSISYKVVTDTGDKADQVSLDKVNIGFTPTVAKVEAEEADLAGTLKVANDHWFYSGEGFVGGFGAAGDEIKFEVDVPADGEYVLNTRTANGTGMPQTLDLYTNGDYNSRVTFPSKGENWNIWSDTEKAVNLKAGTNKITFLRDGETTGNVNIDRILVSAEPINSPVQSEVNLLDNGGFERDAAATTNWVESHPDGQDKAYGVDSGSGVNPPESPAFGKQSAYFYLPGAYKQTLAQQIAVPVNNANYDVEAWVKVSKDDAAKAQMTVNNYDSSDGKTIDLVADDVWHYVTMKDVKVTTGNINTSFQMDSPGGTSIHIDNVRVMPSAE
>CP025222.1|AVV07849.1|2553295_2553715_-|hypothetical-protein
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFGFDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKSENL
>CP025222.1|AVV07848.1|2552550_2553120_-|YdcF-family-protein
MRSLRKIVIILIIIGFMYLLIVAAFMFSGSRTKPSENADTVLILGAKVKGNPAVPSLVLQERLDAAVAYLNEYPKAKVIVSGGQGADESATEASVMEEYLVNEGIARKRIETETKSKRTEENIKYSNAKFNLGKTVIVTSDYHMYRALMLAKRQGIDASGLPATSQTFAKYKGMMREVLSITYAWVFDH
>CP025222.1|AVV07847.1|2551609_2552506_-|YafY-family-transcriptional-regulator
MKLERILAILVMILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFTMLDTYKLATFTFSEAEKQILLEALEARSEFMLNDSQEILREKITLLQTEKPTSKHIFFDSATQHRQQIEAEVKRKIAYIQKAFTTNKQLEITYIAMSGAETTREISPQKLNLMDGSWYLEAYCHKRAAIRHFKLTRITSLKEIDKAIMEVEETEYQPAEMKRIVLEFPKNQLGKLLDYFLQEEMETGDDYVRVSFFYDLERNIIPFLLMFGSAVKILEPASLQKDYKSEVEKLYFNLNC
>CP025222.1|AVV07857.1|2568240_2568474_-|preprotein-translocase-subunit-SecG
MSTVLTVLLIIVSVLLITVIILQPGKSAGLSGAISGGAEQLFGKQKARGLELILHRTTIVLSVVFFAILIALAYFVQ
>CP025222.1|AVV07858.1|2568573_2569317_-|carboxylesterase
MSADRSFTLKAGNRAVLLLHGFAGTTEDVRELGEILAENGYTVHAPNFRGHGDEPAIFLKTTPEMWYEDAVAGYRQLEKDGYDEIAIVGVAMGGVFALKMAESFSPKAIVPLCANVNRKMRYIPIENYLTKQLKKQGIVEQEADQMLKNYLPEIDVMTEARATFYKNVARDIEKIHVPTMIGQGCQDEEIDADNANYIFKHIHTNDKQLCFYAGSGHDIVNDCEKDILEEDLIYFLDDLVWLEEKVV
>CP025222.1|AVV07859.1|2569499_2570219_-|alpha/beta-hydrolase
MIAEINGINLFYQIIGKGEPILLIHGNGQNHRSLKRMIDDLSTNHQVIAVDSRAHGKSEAGNTPLDFEVMALDMLSLLDYLKIDKYKVIGYSDGGIVALVMGKMQPNRQIASVVIGTNYHVNQIRFLPDLFCRVAYGAAFLLAPFSRFFERMKRQLALTIYHPHMSEADLQKISAPLLAVVGEYDLISSKDTKKMVHSVQHGEMVIVRNGLHYLPRQKPKQLLQLIHSFFSNLSAEIHK
>CP025222.1|AVV08335.1|2570351_2570525_-|hypothetical-protein
MLMKVKNSQASKVLETPKIKDAVVHEKSHPLAEKHSVQKKIINADMPQQQFHRRLMK
>CP025222.1|AVV07860.1|2570627_2571920_-|enolase
MSIITEVYAREVLDSRGNPTVEVEVYTEAGAFGRALVPSGASTGEYEAVELRDGDKARYLGKGVLKAVENVNDIIADKIIGFDVTDQIGIDKAMIELDGTPNKGKLGANAILGVSLAAARAAADELGVHLYEYLGGVNGKVLPVPMMNILNGGEHADNNVDVQEFMVMPVGAPNFKEALRMGAEILHALKAVLKGKGLNTGVGDEGGFAPNLKSNEEALETIMQAIKDAGYKPGEEVKLAMDAASSEFYNRETGKYELKGEGVTRTSEEMVTWYEEMITKYPIISIEDGLDENDWDGFKLLTERIGDRVQLVGDDLFVTNTTKLKEGIEKGIANSILIKVNQIGTLTETLDAIEMAKRAGYTAVISHRSGETEDSTIADIAVATNAGQIKTGAPTRTDRVAKYNQLLRIEDNLADLAEYHGNDTFYNLKK
>CP025222.1|AVV07861.1|2572055_2573588_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGELKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLEKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVSAEGEKFEDPIELVKASYANDKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGADHPKNIKFVTMTLYNPSVDAEVAFEPIEMKNVIGEVLSNEGLAQLRIAETEKYPHVTFFMNGGRNEEFPGESRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETMSTPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLIQK
>CP025222.1|AVV07862.1|2573589_2574345_-|triose-phosphate-isomerase
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
>CP025222.1|AVV07863.1|2574390_2575581_-|phosphoglycerate-kinase
MAKKVVTDLDLKDKKVLVRVDFNVPMKDGKITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLESAAGFLMEKEIKFIGGVVDNPARPLVAILGGAKVSDKIGVIENLLTKADKVLVGGGMTFTFMAAQGQEIGKSLLEADKVELAKGLLEKAGDKLVLPVDAVVSKEFSNDAPFHTVSADSIPADEMGLDIGQATIDLFTKELQGAKTVVWNGPMGVFELSNFAKGTIGVCEAIANLTDATTIIGGGDSAAAAMDLGFADKFTHISTGGGASLEYLEGKELPGVASISDK
>CP025222.1|AVV07864.1|2575715_2576726_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFDGEVEVHDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTAQDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMAKVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIGEVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSDQVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKIAK
>CP025222.1|AVV07865.1|2576759_2577806_-|transcriptional-regulator
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLEKIIHRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP025222_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025222_4

2729435-2730461

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

15 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of CP025222_4

>merge|CP025222|4|2729435-2730461|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAACTTCGTCCAATGTACCTCGCCTTTTTTGTCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACCGAAGTAGGTTAGGGTATCGCCGATTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGAGACACCCATTTCAAGCACACCCCTTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCGACACATCGAGTCGTCCGGTTTTACTTACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGAAAATCCGCAATCAATCCAAGCAGAAATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGAATGTGTAAGCTTCTGAGTAACCTAGCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAACCTTTAAAATTAAATTGAAGGTGCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACAATTGACCGGGAATTCATCAATAATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCATATATTATGAATATCGAGATAGTGTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTTTTCTATTTTGGTGACTTTAGTACTTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATGGGAATGCCATAGTTATTACCAATATTGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTCGATCTATCGGACGTGTCGACATTATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTGACTCGGAAATGAAAACAAAAGGTCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACATCGCTACCAATCAATCCGCTATTAAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTTTGTGGAAGGAGTTTGGAATGAAAAAATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP025222|4|3|2729435-2730461|CRISPRCasFinder
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	TTCGTCCAATGTACCTCGCCTTTTTTGTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAGTAGGTTAGGGTATCGCCGATTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAGACACCCATTTCAAGCACACCCCTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGACACATCGAGTCGTCCGGTTTTACTTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGAAAATCCGCAATCAATCCAAGCAGAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGAATGTGTAAGCTTCTGAGTAACCTAGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACCTTTAAAATTAAATTGAAGGTGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACAATTGACCGGGAATTCATCAATAATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATATATTATGAATATCGAGATAGTGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTCTATTTTGGTGACTTTAGTACTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGGGAATGCCATAGTTATTACCAATATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTCGATCTATCGGACGTGTCGACATTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGACTCGGAAATGAAAACAAAAGGTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACATCGCTACCAATCAATCCGCTATTAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTGTGGAAGGAGTTTGGAATGAAAAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP025222|4|2|2729435-2730461|CRT
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	TTCGTCCAATGTACCTCGCCTTTTTTGTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAGTAGGTTAGGGTATCGCCGATTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAGACACCCATTTCAAGCACACCCCTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGACACATCGAGTCGTCCGGTTTTACTTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGAAAATCCGCAATCAATCCAAGCAGAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGAATGTGTAAGCTTCTGAGTAACCTAGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACCTTTAAAATTAAATTGAAGGTGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACAATTGACCGGGAATTCATCAATAATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATATATTATGAATATCGAGATAGTGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTCTATTTTGGTGACTTTAGTACTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGGGAATGCCATAGTTATTACCAATATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTCGATCTATCGGACGTGTCGACATTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGACTCGGAAATGAAAACAAAAGGTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACATCGCTACCAATCAATCCGCTATTAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTGTGGAAGGAGTTTGGAATGAAAAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP025222|4|1|2729501-2730461|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAGTAGGTTAGGGTATCGCCGATTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAGACACCCATTTCAAGCACACCCCTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGACACATCGAGTCGTCCGGTTTTACTTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGAAAATCCGCAATCAATCCAAGCAGAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGAATGTGTAAGCTTCTGAGTAACCTAGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACCTTTAAAATTAAATTGAAGGTGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACAATTGACCGGGAATTCATCAATAATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATATATTATGAATATCGAGATAGTGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTCTATTTTGGTGACTTTAGTACTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGGGAATGCCATAGTTATTACCAATATTGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTCGATCTATCGGACGTGTCGACATTATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTGACTCGGAAATGAAAACAAAAGGTCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACATCGCTACCAATCAATCCGCTATTAAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTTTGTGGAAGGAGTTTGGAATGAAAAAAT
	TATTCGATCTATCGGACGTGTCGACATTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGACTCGGAAATGAAAACAAAAGGTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACATCGCTACCAATCAATCCGCTATTAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTGTGGAAGGAGTTTGGAATGAAAAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>CP025222|4|2|2730162-2730461|PILER-CR
	ACCGAAGTAGGTTAGGGTATCGCCGATTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAGACACCCATTTCAAGCACACCCCTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGACACATCGAGTCGTCCGGTTTTACTTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGAAAATCCGCAATCAATCCAAGCAGAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGAATGTGTAAGCTTCTGAGTAACCTAGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAACCTTTAAAATTAAATTGAAGGTGCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACAATTGACCGGGAATTCATCAATAATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATATATTATGAATATCGAGATAGTGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTCTATTTTGGTGACTTTAGTACTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATGGGAATGCCATAGTTATTACCAATATTGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTCGATCTATCGGACGTGTCGACATTATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATTGACTCGGAAATGAAAACAAAAGGTCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACATCGCTACCAATCAATCCGCTATTAAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTTTGTGGAAGGAGTTTGGAATGAAAAAAT
	TATTCGATCTATCGGACGTGTCGACATTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATTGACTCGGAAATGAAAACAAAAGGTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACATCGCTACCAATCAATCCGCTATTAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTGTGGAAGGAGTTTGGAATGAAAAAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025222.1\|AVV07993.1\|2714451_2715933_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP025222.1\|AVV07996.1\|2717682_2718204_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239796
CP025222.1\|AVV07995.1\|2717019_2717667_-\|hypothetical-protein	unknown	unknown	unknown
CP025222.1\|AVV08003.1\|2731580_2732447_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP025222.1\|AVV07999.1\|2728001_2728424_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
CP025222.1\|AVV08008.1\|2739565_2740003_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP025222.1\|AVV08009.1\|2740197_2740944_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
CP025222.1\|AVV08001.1\|2730590_2731253_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
CP025222.1\|AVV08010.1\|2740949_2741747_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
CP025222.1\|AVV07998.1\|2725560_2727087_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224619
CP025222.1\|AVV07994.1\|2716033_2716921_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP025222.1\|AVV07997.1\|2724263_2725292_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
CP025222.1\|AVV08004.1\|2732447_2736452_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
CP025222.1\|AVV08005.1\|2736976_2737465_-\|hypothetical-protein	unknown	unknown	unknown
CP025222.1\|AVV07991.1\|2710076_2713064_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|225918
CP025222.1\|AVV07992.1\|2713561_2714404_+\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|224824
CP025222.1\|AVV08006.1\|2737474_2738860_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368093
CP025222.1\|AVV08000.1\|2728546_2728909_-\|hypothetical-protein	unknown	unknown	unknown
CP025222.1\|AVV08007.1\|2739151_2739544_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP025222.1\|AVV08002.1\|2731242_2731584_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
CP025222.1\|AVV07993.1\|2714451_2715933_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.77224e-108
CP025222.1\|AVV08002.1\|2731242_2731584_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.15214e-45
CP025222.1\|AVV08003.1\|2731580_2732447_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.96005e-130
CP025222.1\|AVV07999.1\|2728001_2728424_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	6.8812e-42
CP025222.1\|AVV08009.1\|2740197_2740944_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.82266e-128
CP025222.1\|AVV08001.1\|2730590_2731253_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.59906e-114
CP025222.1\|AVV08010.1\|2740949_2741747_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	5.34175e-53
CP025222.1\|AVV07998.1\|2725560_2727087_+\|hypothetical-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	3.41835e-69
CP025222.1\|AVV07994.1\|2716033_2716921_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.88589e-15
CP025222.1\|AVV07997.1\|2724263_2725292_-\|ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	3.84035e-115
CP025222.1\|AVV08004.1\|2732447_2736452_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
CP025222.1\|AVV08008.1\|2739565_2740003_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
CP025222.1\|AVV07991.1\|2710076_2713064_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|225918	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only].	0
CP025222.1\|AVV07992.1\|2713561_2714404_+\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|224824	COG1912, COG1912, Uncharacterized conserved protein [Function unknown].	3.5648e-127
CP025222.1\|AVV08006.1\|2737474_2738860_-\|hypothetical-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	5.37469e-18
CP025222.1\|AVV08007.1\|2739151_2739544_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	4.44953e-85
CP025222.1\|AVV07996.1\|2717682_2718204_-\|hypothetical-protein	gnl\|CDD\|239796	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.	3.48501e-09

>CP025222.1|AVV08000.1|2728546_2728909_-|hypothetical-protein
MKKTSIIFIFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFQIQETSPAQIDPKYVQKIILLNK
>CP025222.1|AVV07999.1|2728001_2728424_-|MerR-family-transcriptional-regulator
MNIKQAADLFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
>CP025222.1|AVV07998.1|2725560_2727087_+|hypothetical-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTENANKIETLENYSGRNLEISWEAKTEKGLWYFIRENNKDIGWVNSNALKISYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALQVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYNNEKLEIVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDSQNSLGWIKAIDINS
>CP025222.1|AVV07997.1|2724263_2725292_-|ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPYLS
>CP025222.1|AVV07996.1|2717682_2718204_-|hypothetical-protein
MLKIFMFTVLFTILLIPSNVNAYTKLGYSLSKPTAKNFKFYINGSAISYKNIIINGAKSWNASPYINTVSMGRDVNPHFTISSSAKDRGATVAICETWTYKGTKVVAKNEVTTFKAFRSLSAGDKTETIAHEFGHGLGLGHVKTKNAIMLDVGFTKKIKPQTDDLNGIKSIYR
>CP025222.1|AVV07995.1|2717019_2717667_-|hypothetical-protein
MKKKIVFFMGLVSIVAMIGCSNDKNSTGKSIERIEIEKVETRNRVVSYRGKYLELAENIDELDESSPIIVTVIKESEAKSVTKESNGSDIPTEFYTMSEVKVKNIKKDETGALKENKKIKILEDSVENVSVDGEEYDLTIDGYKNMKEGEEYTLFIRKSTSGDNYVFTNAVLSKYPVEKVSDRDLFLEGEESVEETVDMKATYKEIYQEVLSEYN
>CP025222.1|AVV07994.1|2716033_2716921_-|TetR/AcrR-family-transcriptional-regulator
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYSVLHQRLEYTMAQDGAKKDNFTECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRLKNMEWVKYQLLEVYGEETKPYINDITMLLSGMAAMYVFASGSKNVNTGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLREALEELNVGIENADIADSDKWQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL
>CP025222.1|AVV07993.1|2714451_2715933_-|MFS-transporter
MNSTAVERPVDVNGKSYSRSLLVVTMIIGAFVAILNQTLLATALPMIMDDLHITAATGQWLTTAFLLTNGIMIPITALLIEKISSKTLFITAMTVFTIGTIIASVAGSFPILLTGRIVQAAGAGIMMPLLQTIFLLIFPREKRGAAMGLMGLVIAFAPAIGPTLSGWIVDSYDWRVLFLILIPIAVIDIILAFFGMKKVVKLTDTKIDFLSIVMSSIGFGALLYGFSSAGNDGWGDTTVITMLIVGVVVIALFVWRQLVIDNPMLELHVFKYPVFSLSVILGSIVTMAMIGAEIVLPLYIQTIRGESALQSGLLLLPGAIIMGIMSPITGIIFDKIGAKWLTITGVTILTIGTIPFMFLTMDTPLWYIVVFYAVRFFGISMAMMPVSTAGMNALPNHLINHGSAVNNTIRQIAGSIGTAVLITVLTNVTKDNMPGKALMATDPASFAQKAQDASLDGMRAAFMVAAIFAAIGMILSLFLKTKKQEPIVKEYTK
>CP025222.1|AVV07992.1|2713561_2714404_+|DNA-directed-RNA-polymerase-subunit-delta
MTKQLLVLQSDFGISDGAVSAMYGVINSVSVDLQIYDLTHQIPQFNIWEASYRLLQTVTYWPENTIFVSIVDPGVGSKRRSVAVLTEDGHYIITPDNGTLTHIAHYGTIKEVRLIDEEKNRLPKSGASHTFHGRDIFAYTAARLAAGVINFEDIGPAAAPESIVSLSLSDSYLEGEQAFGTIDIIDRPFGNLWTNIRRTDFLELGANYGDSIEVLIKHHDRIVYKNFVTYSRSFADLRIGEPLIYVNSLDNLGLGINQGSFVDAYSVGTGTSWKVTLKKA
>CP025222.1|AVV07991.1|2710076_2713064_-|formate-dehydrogenase-subunit-alpha
MGAKVSVQINGVARDVVEGTRMLDYLNAEGIQHPHICYSEQIGPIQSCDTCMCEVDGELMRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFMTGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEVWTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVSASWEDAIHLVATKLREIQAKYGNDSLGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQAPASDGLTRTVGIGADSGTVEDIETAGLVIIVGASPADGHPVLASRIKRAQKTRGQKLIVSDLRKHEMAERSDLFIHPKQGTDFVWLTAVAKYMIDQGWHDEVFMENRISNVRDYLAFLEPFTLDYAEKETGLSAETLKLVAQMVHEADGTAVCWGMGVTQNIAGSHTSSAIANLLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGVSISPEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILASLDFFVVQDVFLSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVARACGRTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLLWPVSADGKDMPLLYEERFNFPDGKAQFSTLPYIAPITFPEEYNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVEVSHELAKERDIESGSLVRLSSPYGRIKLRAVVTERMKGYEVYVPMHSVSSETAVNLLTSSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVARKWSREDYQPISKVNCACGGNCGCGGKGRNH
>CP025222.1|AVV08001.1|2730590_2731253_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDEPITIEDSTIFVIEDVRVFANVAKLFYQYDETEELKVFNTKQHPLKSSELMLVTDILGHDINSAATLKLIYTDLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDPDYFLHVENSV
>CP025222.1|AVV08002.1|2731242_2731584_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSVGNSDARLIFLGDAIDEF
>CP025222.1|AVV08003.1|2731580_2732447_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQHEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLSKQLGWDSELKSEVWTEIISQKILNQSTFLSMLNYDEKADSLIKLHETLEIFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHSNQFNDFNFASDIMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFNKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>CP025222.1|AVV08004.1|2732447_2736452_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKISGDSEKKQIKKNFWGVRLFEKGETAAKRRMSRTARRRIERRRNRISYLQEIFAIQMNEVDDNFFNRLKESFYAESDKKYNRHPFFGTVEEEVAYYKDFPTIYHLRKELIDSQKKADLRLVYLALAHIIKYRGHFLIEGALDTKNTSIDEMFKQFLQIYNQVFANDIEEASLKKTEKNQEVAQILAEKFTRKDKLDKILSLYPGEKTTGVFAQFVNIIVGSTGKFKKHFNLHEKKDINCAEDTYDTDLESLLAIIGDEFAEVFVAAKNAYNAVVLSNIITVTDSTTRAKLSASLIERFENHKEDLKKMKRFVRTYLPEKYDEIFDDTEKHGYAGYISGKTKQADFYKYMKATLEKIEGADYFIAKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREDYEKIKSLVTFRIPYFVGPLAKGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKVRYIDDQGKTNYFSGQEKQQIFNDLFKQKRKVKKKDLELFLRNINQIESPTIEGLEDSFNASYATYHDLLKVGMKQEILDNPLNTEMLEDIVKILTVFEDKRMIKEQLQQFSDVLDGTVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVAELAGSPAIKKGILQSLKIVDELVSVMGYPPQTIVVEMARENQTTNKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSVDNLVLTSSAGNREKGDNVPPLEIVQKRKIFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNYKTDGNKDTMETVRIVTLKSALVSQFRKQFQFYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFGWFKANKATAKKQFYTNIMLFFAQKDRIIDENGEILWDKRYLETVKKVLGYRQMNIVKKTEIQKGEFSNVTPNPKGKSNKLIPRKKDWDPIKYGGFDGSKMAYAIIIEYEKQKRKVRIEKKLIQINIMEREAFEKDEKTFLEEKGYHQPKVLIKVPKYTLYECKNGRRRMLGSANEAHKGNQMLLPNHLMALLYHAEKYEAIDGESLAYIEVHRALFDELLAYISEFARKYTLSNDRLDEINMLYERNKDGDVKSIAESFVSLKKFNAFGVHQDFSFFGTKIERKRDRKLNELLNSTIIYQSITGLYESRKRLDN
>CP025222.1|AVV08005.1|2736976_2737465_-|hypothetical-protein
MKEDILAVYKKFEINNLNMFFDDLIEYVNKYYTVFSKYISLDYLDAITRLDSTSLILGHSDDNFEIAIPFYTNKVIEGLNEEELSNQVSSLIWDLSAYMTEELCPSCNDSNLRLTTMVSREDTLVKFCDECLYTGIRNERVEIEEDLVPAPKKKVEEYLRGK
>CP025222.1|AVV08006.1|2737474_2738860_-|hypothetical-protein
MSRIDIAELNEFLHNLKSSNDEARRMLGKMQEVTNAYATDTSLKGKAIETSQAYFDQTYSVICKSLIEALDESEERLERYIREFGEQVDSSYNARIDAEMLQEAIFRLAEIKRKQEDLLQRMSASTGTLHEGEQQRLRTQFTDALEQEKILERYIAFEQSHGRFFDSFSELVYCAGKAVRELAANVTFNSQTGTYDIGKLDTNKFHALQKFLPKKKKYNFNEYEIRWNGAAHILLRGDVVDAEATAAYNDAVAKGELPKVSNQATESAEEINAVVNALKKGQDPITGQEISKAQSFGIAIGLVYMYVGGKYKGRKIKLPKNALENLEKQQAFKDKEVGGADIPNPNVGIVQSRVNLAENPTRFSPSKNAGMKHVRNRHYNPSKNAGQFTIPESDLKNILQSKQVVNTPVKQIESGDFERVIDIGKNMGTVKPSLGGQTTTWIKVITDKAGNIITTYPVPKP
>CP025222.1|AVV08007.1|2739151_2739544_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>CP025222.1|AVV08008.1|2739565_2740003_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>CP025222.1|AVV08009.1|2740197_2740944_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>CP025222.1|AVV08010.1|2740949_2741747_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFVYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTFLLISLAVLSGLLFWLRS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP025222_2	2.3\|518214\|39\|CP025222\|CRT	518214-518252	39	CP025222.1	516009-516047	0	1.0
CP025222_2	2.6\|518448\|39\|CP025222\|CRT	518448-518486	39	CP025222.1	516243-516281	2	0.949

1. spacer 2.3|518214|39|CP025222|CRT matches to position: 516009-516047, mismatch: 0, identity: 1.0

tatgccatgtttgaagattgtactagtcttgaagagctg	CRISPR spacer
tatgccatgtttgaagattgtactagtcttgaagagctg	Protospacer
***************************************

2. spacer 2.6|518448|39|CP025222|CRT matches to position: 516243-516281, mismatch: 2, identity: 0.949

cgtgccatgtttgctggttgtactagtcttgaagtgtta	CRISPR spacer
cgtgccatgtttgctggctgtactagtcttgaagcgtta	Protospacer
*****************.****************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025222_4	4.6\|2729801\|31\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729801-2729831	31	KJ094022	Listeria phage LP-030-3, complete genome	16313-16343	0	1.0
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	KJ094023	Listeria phage LP-101, complete genome	19426-19455	0	1.0
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NC_003216	Listeria phage A118, complete genome	6554-6583	0	1.0
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	AJ242593	Bacteriophage A118 complete genome	6554-6583	0	1.0
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	KJ094022	Listeria phage LP-030-3, complete genome	14945-14974	0	1.0
CP025222_4	4.6\|2729801\|31\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729801-2729831	31	KP399678	Listeria phage vB_LmoS_293, complete genome	7920-7950	1	0.968
CP025222_4	4.2\|2729537\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729537-2729566	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	18565-18594	2	0.933
CP025222_4	4.2\|2729537\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729537-2729566	30	DQ003641	Listeria phage P35, complete genome	34695-34724	2	0.933
CP025222_4	4.6\|2729801\|31\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729801-2729831	31	MH341452	Listeria phage PSU-VKH-LP040, complete genome	7933-7963	2	0.935
CP025222_4	4.6\|2729801\|31\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729801-2729831	31	DQ003637	Listeria phage A500, complete genome	7899-7929	2	0.935
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NC_003216	Listeria phage A118, complete genome	20408-20437	2	0.933
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	AJ242593	Bacteriophage A118 complete genome	20408-20437	2	0.933
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	X85008	Bacteriophage A118 hol118 and ply118 genes	656-685	2	0.933
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	MH341451	Listeria phage PSU-VKH-LP019, complete genome	34285-34314	2	0.933
CP025222_4	4.6\|2729801\|31\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729801-2729831	31	NC_003216	Listeria phage A118, complete genome	7919-7949	4	0.871
CP025222_4	4.6\|2729801\|31\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729801-2729831	31	AJ242593	Bacteriophage A118 complete genome	7919-7949	4	0.871
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	MN693541	Marine virus AFVG_25M436, complete genome	24008-24037	5	0.833
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	818605-818634	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	787053-787082	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	904548-904577	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	884825-884854	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	501019-501048	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	388973-389002	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1571574-1571603	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1165238-1165267	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	827058-827087	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	104968-104997	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	818608-818637	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349303	Cyanophage S-RIM14 isolate Sn_11_0110, complete genome	131357-131386	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349304	Cyanophage S-RIM14 isolate Sn_18_0910, complete genome	130573-130602	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349306	Cyanophage S-RIM14 isolate W1_23_0910, complete genome	130577-130606	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349298	Cyanophage S-RIM14 isolate LIS_02_1110, complete genome	130574-130603	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349299	Cyanophage S-RIM14 isolate LIS_22_0610, complete genome	130574-130603	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349305	Cyanophage S-RIM14 isolate Sn_23_0910, complete genome	130575-130604	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	JF974292	Cyanophage S-SSM2 genomic sequence	114856-114885	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349300	Cyanophage S-RIM14 isolate Np_11_1211, complete genome	130581-130610	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	NC_015281	Synechococcus phage S-ShM2, complete genome	130579-130608	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349301	Cyanophage S-RIM14 isolate Np_45_0711, complete genome	130574-130603	6	0.8
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	KX349302	Cyanophage S-RIM14 isolate RW_03_0110, complete genome	130574-130603	6	0.8
CP025222_4	4.1\|2729471\|30\|CP025222\|CRISPRCasFinder,CRT	2729471-2729500	30	MK813941	Aeromonas phage 4_L372XY, complete genome	93420-93449	7	0.767
CP025222_4	4.9\|2730000\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730000-2730029	30	NC_041887	Rhodococcus phage Weasels2, complete genome	68085-68114	7	0.767
CP025222_4	4.10\|2730066\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730066-2730095	30	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	13562-13591	7	0.767
CP025222_4	4.12\|2730198\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730198-2730227	30	NZ_CP053711	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence	17299-17328	7	0.767
CP025222_4	4.12\|2730198\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730198-2730227	30	NZ_CP053711	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence	69337-69366	7	0.767
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	5535-5564	7	0.767
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	MF370964	Pseudoalteromonas phage SL20, complete genome	4318-4347	7	0.767
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NZ_CP043436	Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence	2890-2919	8	0.733
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NZ_CP016721	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence	23276-23305	8	0.733
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NZ_CP016727	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence	23275-23304	8	0.733
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NZ_CP008809	Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence	8547-8576	8	0.733
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NZ_CP008812	Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence	17700-17729	8	0.733
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NZ_CP018792	Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence	21826-21855	8	0.733
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	55457-55486	8	0.733
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	NZ_CP018794	Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence	22093-22122	8	0.733
CP025222_4	4.7\|2729868\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2729868-2729897	30	KC699836	Bacillus phage SIOphi, partial genome	2244-2273	8	0.733
CP025222_4	4.10\|2730066\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730066-2730095	30	NZ_CP015799	Borrelia mayonii strain MN14-1539 plasmid cp32-13, complete sequence	7241-7270	8	0.733
CP025222_4	4.12\|2730198\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730198-2730227	30	NC_014120	Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence	170278-170307	8	0.733
CP025222_4	4.13\|2730264\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730264-2730293	30	NC_015427	Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence	20826-20855	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_CP022274	Citrobacter freundii strain 18-1 plasmid pA18-1, complete sequence	53211-53240	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_CP010360	Enterobacter roggenkampii strain 35734 plasmid p35734-141.404kb, complete sequence	111873-111902	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_CP041048	Citrobacter sp. CF971 plasmid pBM527-2, complete sequence	49887-49916	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	MN783744	Klebsiella oxytoca plasmid pFDL-VIM, complete sequence	53506-53535	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NC_012885	Aeromonas hydrophila plasmid pRA1, complete sequence	6505-6534	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_CP042536	Citrobacter freundii strain E51 plasmid pE51_002, complete sequence	5535-5564	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_CP034714	Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence	5534-5563	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_CP012168	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence	228661-228690	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	MN783743	Escherichia coli plasmid pGA_VIM, complete sequence	64763-64792	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_CP034084	Klebsiella pneumoniae subsp. pneumoniae strain R210-2 plasmid pR210-2-VIM, complete sequence	5538-5567	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_MH220284	Aeromonas sp. pRIVM0001_VIM-1 plasmid pRIVM0001_VIM-1_171012_B12, complete sequence	5494-5523	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_MG228427	Kluyvera cryocrescens strain BO64W plasmid pKC-BO-N1-VIM, complete sequence	5538-5567	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_MG550958	Escherichia coli strain G3216 plasmid pG3216.2, complete sequence	38131-38160	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_MH325469	Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence	5811-5840	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_MH325468	Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence	5811-5840	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_MH594478	Citrobacter freundii strain AA593 plasmid pIBAC_Incx3_A/C, complete sequence	30452-30481	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_MH594477	Citrobacter freundii strain AA535 plasmid pIBAC_IncA/C, complete sequence	31209-31238	8	0.733
CP025222_4	4.14\|2730330\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730330-2730359	30	NZ_MG053108	Citrobacter freundii strain 33587 plasmid pCf587, complete sequence	6505-6534	8	0.733
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	LT615366	Enterococcus phage VPE25 genome assembly, chromosome: VPE25	22229-22258	8	0.733
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	LT546029	Enterococcus phage VFW genome assembly, chromosome: VFW	22161-22190	8	0.733
CP025222_4	4.15\|2730396\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730396-2730425	30	LT546030	Enterococcus phage VPE25 genome assembly, chromosome: I	22229-22258	8	0.733
CP025222_4	4.10\|2730066\|30\|CP025222\|CRISPRCasFinder,CRT,PILER-CR	2730066-2730095	30	JQ680352	Unidentified phage clone 1013_scaffold1713 genomic sequence	5412-5441	9	0.7

1. spacer 4.6|2729801|31|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcgaatgtgtaagcttctgagtaacctagca	Protospacer
*******************************

2. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
taacctttaaaattaaattgaaggtgcgga	Protospacer
******************************

3. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
tacatcgctaccaatcaatccgctattaag	Protospacer
******************************

4. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
tacatcgctaccaatcaatccgctattaag	Protospacer
******************************

5. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
tacatcgctaccaatcaatccgctattaag	Protospacer
******************************

6. spacer 4.6|2729801|31|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 1, identity: 0.968

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcgaatgtgtaagcttctgagtaacctagta	Protospacer
*****************************.*

7. spacer 4.2|2729537|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 2, identity: 0.933

accgaagtaggttagggtatcgccgatttt	CRISPR spacer
tccgaaataggttagggtatcgccgatttt	Protospacer
 *****.***********************

8. spacer 4.2|2729537|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 2, identity: 0.933

accgaagtaggttagggtatcgccgatttt	CRISPR spacer
tccgaaataggttagggtatcgccgatttt	Protospacer
 *****.***********************

9. spacer 4.6|2729801|31|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.935

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcaaacgtgtaagcttctgagtaacctagca	Protospacer
**.**.*************************

10. spacer 4.6|2729801|31|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.935

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcaaacgtgtaagcttctgagtaacctagca	Protospacer
**.**.*************************

11. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.933

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

12. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.933

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

13. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.933

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tagcctttataattaaattgaaggtgcgga	Protospacer
**.****** ********************

14. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 2, identity: 0.933

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
gtttgtggaaggagtttggaatgaaaagag	Protospacer
***************************.*

15. spacer 4.6|2729801|31|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 4, identity: 0.871

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcgaatgtgtaagcttccgaataacctaaaa	Protospacer
*****************.**.*******. *

16. spacer 4.6|2729801|31|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 4, identity: 0.871

tcgaatgtgtaagcttctgagtaacctagca	CRISPR spacer
tcgaatgtgtaagcttccgaataacctaaaa	Protospacer
*****************.**.*******. *

17. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to MN693541 (Marine virus AFVG_25M436, complete genome) position: , mismatch: 5, identity: 0.833

-tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ataca-ggttaccaatcaaaccgctattaac	Protospacer
 ****  *.********** **********

18. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

19. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

20. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

21. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

22. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

23. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

24. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

25. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

26. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

27. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

28. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atttcatgatggaatttggaatgaaaaaat	Protospacer
.***   ** ***.****************

29. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349303 (Cyanophage S-RIM14 isolate Sn_11_0110, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

30. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349304 (Cyanophage S-RIM14 isolate Sn_18_0910, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

31. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349306 (Cyanophage S-RIM14 isolate W1_23_0910, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

32. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349298 (Cyanophage S-RIM14 isolate LIS_02_1110, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

33. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349299 (Cyanophage S-RIM14 isolate LIS_22_0610, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

34. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349305 (Cyanophage S-RIM14 isolate Sn_23_0910, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

35. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to JF974292 (Cyanophage S-SSM2 genomic sequence) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

36. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349300 (Cyanophage S-RIM14 isolate Np_11_1211, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

37. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_015281 (Synechococcus phage S-ShM2, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

38. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349301 (Cyanophage S-RIM14 isolate Np_45_0711, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

39. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KX349302 (Cyanophage S-RIM14 isolate RW_03_0110, complete genome) position: , mismatch: 6, identity: 0.8

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
atctggtgaagcagtttgaaatgaaaaaat	Protospacer
.*.**  **** ******.***********

40. spacer 4.1|2729471|30|CP025222|CRISPRCasFinder,CRT matches to MK813941 (Aeromonas phage 4_L372XY, complete genome) position: , mismatch: 7, identity: 0.767

ttcgtccaatgtacctcgccttttttgtct	CRISPR spacer
taatttcaatgtacctcgccaattttgtcg	Protospacer
*   *.**************  *******

41. spacer 4.9|2730000|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_041887 (Rhodococcus phage Weasels2, complete genome) position: , mismatch: 7, identity: 0.767

tcatatattatgaatatcgagatagtgttc	CRISPR spacer
ttctatattatgaagatcgaaatagttatg	Protospacer
*. *********** *****.*****  *

42. spacer 4.10|2730066|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 7, identity: 0.767

gttttctattttggtgactttagtactttt	CRISPR spacer
gccttctattttagtgactttagtagtgaa	Protospacer
*..*********.************ *

43. spacer 4.12|2730198|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053711 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

tattcgatctatcggacgtgtcgacattat	CRISPR spacer
gattcgatctagcggacgtgacgacacctc	Protospacer
 ********** ******** *****.. .

44. spacer 4.12|2730198|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053711 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

tattcgatctatcggacgtgtcgacattat	CRISPR spacer
gattcgatctagcggacgtgacgacacctc	Protospacer
 ********** ******** *****.. .

45. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 7, identity: 0.767

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcaca	Protospacer
 .**.*********** *********.* .

46. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to MF370964 (Pseudoalteromonas phage SL20, complete genome) position: , mismatch: 7, identity: 0.767

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
tgttgtggaaggagtttgggatgcgataag	Protospacer
  *****************.*** .* **

47. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043436 (Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

48. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
aagaatttaaaattaaatagaaggtgataa	Protospacer
 *.  ************* *******  .*

49. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
aagaatttaaaattaaatagaaggtgataa	Protospacer
 *.  ************* *******  .*

50. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008809 (Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

51. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008812 (Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

52. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018792 (Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

53. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
aagaatttaaaattaaatagaaggtgacaa	Protospacer
 *.  ************* *******  .*

54. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018794 (Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
caacctttaaaattaaatttaaagaaatta	Protospacer
.****************** **.* .   *

55. spacer 4.7|2729868|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to KC699836 (Bacillus phage SIOphi, partial genome) position: , mismatch: 8, identity: 0.733

taacctttaaaattaaattgaaggtgcgga	CRISPR spacer
tccaacttaaatttaaattgaaagtgcggg	Protospacer
*    .***** **********.******.

56. spacer 4.10|2730066|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015799 (Borrelia mayonii strain MN14-1539 plasmid cp32-13, complete sequence) position: , mismatch: 8, identity: 0.733

gttttctattttggtgactttagtactttt	CRISPR spacer
gaaaataatgttggtgactttattactttt	Protospacer
*    . ** ************ *******

57. spacer 4.12|2730198|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_014120 (Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence) position: , mismatch: 8, identity: 0.733

tattcgatctatcggacgtgtcgacattat	CRISPR spacer
ttttcgatctatcggacgtggcgctgggaa	Protospacer
* ****************** ** ..  *

58. spacer 4.13|2730264|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_015427 (Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence) position: , mismatch: 8, identity: 0.733

tattgactcggaaatgaaaacaaaaggtca	CRISPR spacer
taaatcttcggaaataaaaacaaaaggttg	Protospacer
**    .********.************..

59. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022274 (Citrobacter freundii strain 18-1 plasmid pA18-1, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

60. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010360 (Enterobacter roggenkampii strain 35734 plasmid p35734-141.404kb, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

61. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041048 (Citrobacter sp. CF971 plasmid pBM527-2, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

62. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to MN783744 (Klebsiella oxytoca plasmid pFDL-VIM, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

63. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NC_012885 (Aeromonas hydrophila plasmid pRA1, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

64. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042536 (Citrobacter freundii strain E51 plasmid pE51_002, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

65. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034714 (Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

66. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012168 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

67. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to MN783743 (Escherichia coli plasmid pGA_VIM, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

68. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034084 (Klebsiella pneumoniae subsp. pneumoniae strain R210-2 plasmid pR210-2-VIM, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

69. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH220284 (Aeromonas sp. pRIVM0001_VIM-1 plasmid pRIVM0001_VIM-1_171012_B12, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

70. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG228427 (Kluyvera cryocrescens strain BO64W plasmid pKC-BO-N1-VIM, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

71. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG550958 (Escherichia coli strain G3216 plasmid pG3216.2, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

72. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH325469 (Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

73. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH325468 (Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

74. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH594478 (Citrobacter freundii strain AA593 plasmid pIBAC_Incx3_A/C, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

75. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH594477 (Citrobacter freundii strain AA535 plasmid pIBAC_IncA/C, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

76. spacer 4.14|2730330|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG053108 (Citrobacter freundii strain 33587 plasmid pCf587, complete sequence) position: , mismatch: 8, identity: 0.733

tacatcgctaccaatcaatccgctattaag	CRISPR spacer
ggcaccgctaccaatccatccgctatcgca	Protospacer
 .**.*********** *********.. .

77. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to LT615366 (Enterococcus phage VPE25 genome assembly, chromosome: VPE25) position: , mismatch: 8, identity: 0.733

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
tatgagagaaagagtttggaatgaaaaaaa	Protospacer
  * . .***.******************

78. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to LT546029 (Enterococcus phage VFW genome assembly, chromosome: VFW) position: , mismatch: 8, identity: 0.733

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
tatgagagaaagagtttggaatgaaaaaaa	Protospacer
  * . .***.******************

79. spacer 4.15|2730396|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to LT546030 (Enterococcus phage VPE25 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.733

gtttgtggaaggagtttggaatgaaaaaat	CRISPR spacer
tatgagagaaagagtttggaatgaaaaaaa	Protospacer
  * . .***.******************

80. spacer 4.10|2730066|30|CP025222|CRISPRCasFinder,CRT,PILER-CR matches to JQ680352 (Unidentified phage clone 1013_scaffold1713 genomic sequence) position: , mismatch: 9, identity: 0.7

gttttctattttggtgactttagtactttt	CRISPR spacer
cctttctattttggtgagtttagtgaccca	Protospacer
 .*************** ******. ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

122447 : 128972

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV05510.1\|122447_122900_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
AVV05511.1\|122905_123241_-	XRE family transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
AVV05512.1\|123457_123886_+	hypothetical protein	NA	NA	NA	NA
AVV05513.1\|123897_124314_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	39.3
AVV05514.1\|124591_124981_+	DUF5072 domain-containing protein	NA	NA	NA	NA
AVV05515.1\|124993_125506_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
AVV05516.1\|125553_125856_+	segregation and condensation protein B	NA	NA	NA	NA
AVV05517.1\|125897_126302_+	phenylalanine racemase	NA	NA	NA	NA
AVV05518.1\|126288_128157_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
AVV05519.1\|128153_128972_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	4.2e-39	35.0

DBSCAN-SWA_2

1140278 : 1147701

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV06476.1\|1140278_1140662_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
AVV06477.1\|1140683_1141667_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
AVV06478.1\|1141681_1142695_+	glycosyl transferase	A0A1V0SAH6	Catovirus	7.9e-11	32.0
AVV06479.1\|1142903_1144394_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
AVV06480.1\|1144405_1145230_+	NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
AVV06481.1\|1145242_1145551_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AVV06482.1\|1145611_1146016_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
AVV06483.1\|1146144_1147701_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_3

1875097 : 1883383

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV07176.1\|1875097_1875664_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.1e-25	35.9
AVV07177.1\|1875660_1876710_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.6e-62	43.5
AVV07178.1\|1876728_1878156_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
AVV07179.1\|1878140_1880360_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-160	41.4
AVV07180.1\|1880352_1881036_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AVV07181.1\|1881039_1881285_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AVV07182.1\|1881296_1882010_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.7e-42	38.7
AVV07183.1\|1882090_1883383_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

DBSCAN-SWA_4

2207761 : 2237326

Listeria_phage(52.0%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV07506.1\|2207761_2209891_-	DNA polymerase I	A0A2H4J6W7	uncultured_Caudovirales_phage	1.1e-115	38.5
AVV07507.1\|2209902_2210238_-	hypothetical protein	NA	NA	NA	NA
AVV07508.1\|2210234_2210621_-	hypothetical protein	NA	NA	NA	NA
AVV07509.1\|2210621_2211374_-	hypothetical protein	A0A2H4IZK6	uncultured_Caudovirales_phage	3.3e-30	37.6
AVV07510.1\|2211505_2212033_-	hypothetical protein	NA	NA	NA	NA
AVV07511.1\|2212093_2212990_-	hypothetical protein	A0A142F1Q1	Bacillus_phage	3.9e-54	40.3
AVV07512.1\|2213007_2213253_-	hypothetical protein	NA	NA	NA	NA
AVV07513.1\|2213324_2214668_-	DNA helicase	A0A2H4IZL9	uncultured_Caudovirales_phage	5.8e-94	44.1
AVV07514.1\|2214657_2215095_-	hypothetical protein	NA	NA	NA	NA
AVV07515.1\|2215337_2215604_-	hypothetical protein	Q8W5W6	Listeria_phage	9.8e-22	61.2
AVV07516.1\|2215616_2216087_-	hypothetical protein	D9J0I6	Brochothrix_phage	2.1e-14	30.9
AVV07517.1\|2216083_2216380_-	hypothetical protein	NA	NA	NA	NA
AVV07518.1\|2216379_2216517_-	hypothetical protein	Q8W5X0	Listeria_phage	6.6e-06	76.7
AVV07519.1\|2216648_2217278_-	hypothetical protein	A0A191KBJ8	Streptococcus_virus	4.8e-67	58.4
AVV07520.1\|2217278_2217701_-	hypothetical protein	A8ATE4	Listeria_phage	3.0e-33	71.2
AVV07521.1\|2217779_2217995_-	hypothetical protein	NA	NA	NA	NA
AVV07522.1\|2218178_2218634_-	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	1.5e-81	90.7
AVV08322.1\|2218630_2218858_-	hypothetical protein	NA	NA	NA	NA
AVV07523.1\|2219003_2219318_-	hypothetical protein	NA	NA	NA	NA
AVV08323.1\|2219319_2219964_-	DNA replication protein	A0A2H4J7I5	uncultured_Caudovirales_phage	3.8e-51	49.1
AVV07524.1\|2220011_2220383_-	hypothetical protein	A0A142F1P2	Bacillus_phage	6.2e-22	36.1
AVV07525.1\|2220360_2220621_-	hypothetical protein	NA	NA	NA	NA
AVV07526.1\|2220610_2220889_-	hypothetical protein	NA	NA	NA	NA
AVV07527.1\|2220958_2221192_-	hypothetical protein	NA	NA	NA	NA
AVV07528.1\|2221184_2221382_-	hypothetical protein	NA	NA	NA	NA
AVV07529.1\|2221541_2221826_-	hypothetical protein	NA	NA	NA	NA
AVV07530.1\|2222075_2222405_+	XRE family transcriptional regulator	R4IH08	Staphylococcus_phage	9.4e-14	47.9
AVV07531.1\|2222484_2222964_+	hypothetical protein	NA	NA	NA	NA
AVV07532.1\|2222975_2223284_+	XRE family transcriptional regulator	A0A1X9IGD3	Lactococcus_phage	2.0e-10	50.8
AVV07533.1\|2223317_2224130_+	hypothetical protein	NA	NA	NA	NA
AVV07534.1\|2224152_2224335_-	hypothetical protein	R4IBI5	Listeria_phage	1.0e-09	62.3
AVV07535.1\|2224331_2224565_-	hypothetical protein	R4IDW6	Listeria_phage	2.8e-28	78.9
AVV07536.1\|2224860_2225262_+	hypothetical protein	NA	NA	NA	NA
AVV07537.1\|2225262_2225694_+	transcriptional regulator	A8ATJ2	Listeria_phage	1.8e-25	81.7
AVV07538.1\|2225690_2226191_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.0e-64	73.0
AVV07539.1\|2226256_2226646_-	hypothetical protein	NA	NA	NA	NA
AVV07540.1\|2226642_2226996_-	hypothetical protein	NA	NA	NA	NA
AVV07541.1\|2226992_2227619_-	hypothetical protein	NA	NA	NA	NA
AVV07542.1\|2227953_2228796_-	peptidase M15	A0A059T7Y8	Listeria_phage	3.2e-127	82.0
AVV07543.1\|2228795_2229056_-\|holin	phage holin	A8ATB7	Listeria_phage	2.9e-26	69.1
AVV07544.1\|2229061_2229388_-	hypothetical protein	A0A059TA22	Listeria_phage	2.6e-16	82.7
AVV07545.1\|2229447_2230578_-	hypothetical protein	Q8W5Z4	Listeria_phage	4.1e-69	55.3
AVV07546.1\|2230584_2232768_-	hypothetical protein	R4IDV9	Listeria_phage	2.0e-91	33.5
AVV07547.1\|2232764_2233508_-	hypothetical protein	A0A0A8WHP7	Clostridium_phage	4.7e-29	32.8
AVV07548.1\|2233522_2237326_-\|tail	phage tail tape measure protein	A0A1Q1PW35	Staphylococcus_phage	2.4e-84	41.6

DBSCAN-SWA_5

2590937 : 2598781

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV07877.1\|2590937_2591909_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
AVV07878.1\|2591916_2592885_-	gluconeogenesis factor	A1IMD5	Streptococcus_phage	6.7e-68	43.3
AVV07879.1\|2592886_2593762_-	RNase adaptor protein RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
AVV07880.1\|2593869_2595600_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.3e-175	54.0
AVV07881.1\|2595641_2596703_-	galactose mutarotase	NA	NA	NA	NA
AVV07882.1\|2596719_2597703_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.2e-50	36.9
AVV07883.1\|2597821_2598781_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.9e-87	53.4

DBSCAN-SWA_6

2888118 : 2898149

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV08167.1\|2888118_2890272_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	6.7e-44	34.1
AVV08168.1\|2890295_2892068_-	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	6.3e-80	37.1
AVV08169.1\|2892228_2893695_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.0e-97	40.0
AVV08343.1\|2893717_2893852_+	restriction endonuclease	NA	NA	NA	NA
AVV08170.1\|2893981_2894512_-	ADP-ribose-binding protein	A0A0K1L687	Scale_drop_disease_virus	5.2e-30	50.0
AVV08171.1\|2894569_2896180_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-46	29.7
AVV08172.1\|2896358_2896667_+	hypothetical protein	NA	NA	NA	NA
AVV08173.1\|2896694_2898149_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	1.9e-50	30.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025222

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection