CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025555	Salmonella enterica subsp. enterica serovar Typhimurium strain PIR00538 chromosome, complete genome	0 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,RT	0	0	10	0
CP025556	Salmonella enterica subsp. enterica serovar Typhimurium strain PIR00538 plasmid pPIR00538, complete sequence	0 crisprs	cas14j	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1216079 : 1292814

Salmonella_phage(37.93%)

portal,tail,lysis,integrase,protease,head,terminase,capsid,holin,transposase,tRNA

attL 1208160:1208176|attR 1298661:1298677

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1208160:1208176	attL	NA	NA	NA	NA
AVU97146.1\|1216079_1217117_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AVU97147.1\|1217232_1217922_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AVU97148.1\|1218240_1218624_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AVU97149.1\|1218685_1219273_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
AVV00616.1\|1219375_1220275_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVU97150.1\|1220292_1221627_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AVU97151.1\|1221757_1222495_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
AVU97152.1\|1222479_1224102_-	L-aspartate oxidase	NA	NA	NA	NA
AVU97153.1\|1224186_1224366_+	hypothetical protein	NA	NA	NA	NA
AVU97154.1\|1224526_1225102_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AVU97155.1\|1225133_1225784_+	anti-sigma-E factor RseA	NA	NA	NA	NA
AVU97156.1\|1225783_1226740_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AVU97157.1\|1226736_1227216_+	SoxR reducing system protein RseC	NA	NA	NA	NA
AVU97158.1\|1227245_1227362_+	transcriptional regulator	NA	NA	NA	NA
AVU97159.1\|1227713_1228943_+\|integrase	integrase	H6WRW7	Salmonella_phage	2.9e-233	94.4
AVU97160.1\|1228920_1229205_-	excisionase	H6WRW8	Salmonella_phage	3.1e-42	86.2
AVU97161.1\|1229245_1229485_-	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AVU97162.1\|1229527_1230685_-	enterohemolysin	S4TTE8	Salmonella_phage	3.9e-216	99.5
AVU97163.1\|1230647_1233575_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.3
AVU97164.1\|1233701_1234052_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
AVU97165.1\|1234073_1234232_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
AVU97166.1\|1234688_1235351_-	hypothetical protein	NA	NA	NA	NA
AVU97167.1\|1235350_1235737_-	hypothetical protein	NA	NA	NA	NA
AVU97168.1\|1235729_1236569_-	chromosome partitioning protein ParA	A0A1X9IGI7	Lactococcus_phage	1.5e-31	33.3
AVU97169.1\|1236627_1237023_-	transcriptional regulator	K7PM35	Enterobacteria_phage	1.9e-37	61.4
AVU97170.1\|1237122_1237365_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.1e-23	64.1
AVU97171.1\|1237324_1237699_+	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
AVU97172.1\|1237790_1238675_+	replication protein	K7PGT1	Enterobacteria_phage	1.3e-46	47.2
AVU97173.1\|1238671_1239367_+	phage replication protein	G8C7U6	Escherichia_phage	2.1e-55	45.4
AVU97174.1\|1239380_1240079_+	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
AVU97175.1\|1240186_1240819_+	hypothetical protein	NA	NA	NA	NA
AVU97176.1\|1241061_1241295_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
AVU97177.1\|1241411_1241660_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
AVU97178.1\|1241694_1242297_+	hypothetical protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
AVU97179.1\|1242296_1242503_+	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-34	97.1
AVU97180.1\|1242505_1243117_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
AVU97181.1\|1243113_1243254_+	hypothetical protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
AVU97182.1\|1243250_1243928_+	antiterminator	I6PDF8	Cronobacter_phage	7.7e-63	54.0
AVU97183.1\|1243924_1244110_+	hypothetical protein	NA	NA	NA	NA
AVU97184.1\|1244200_1244764_+	hypothetical protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
AVU97185.1\|1245270_1245459_+	hypothetical protein	NA	NA	NA	NA
AVU97186.1\|1245673_1246360_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
AVV00617.1\|1246635_1246965_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AVU97187.1\|1246948_1247401_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
AVV00618.1\|1247418_1247871_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
AVU97188.1\|1248106_1248508_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
AVU97189.1\|1248542_1248737_+	hypothetical protein	NA	NA	NA	NA
AVU97190.1\|1248794_1249340_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AVU97191.1\|1249311_1251243_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
AVU97192.1\|1251226_1251430_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
AVU97193.1\|1251426_1253007_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
AVU97194.1\|1252996_1254493_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
AVU97195.1\|1254505_1254853_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AVU97196.1\|1254907_1255936_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AVU97197.1\|1255993_1256353_+	DNA packaging protein	NA	NA	NA	NA
AVU97198.1\|1256363_1256747_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
AVU97199.1\|1256774_1257353_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
AVU97200.1\|1257401_1258652_-\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	7.8e-218	100.0
AVU97201.1\|1258640_1259042_+\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AVU97202.1\|1259049_1259796_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AVU97203.1\|1259846_1260242_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AVU97204.1\|1260238_1260577_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AVU97205.1\|1260548_1263644_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
AVU97206.1\|1263646_1263976_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
AVU97207.1\|1263985_1264684_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
AVU97208.1\|1264690_1265428_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
AVU97209.1\|1265325_1265973_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
AVU97210.1\|1266034_1269397_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
AVU97211.1\|1269435_1269678_+	hypothetical protein	NA	NA	NA	NA
AVU97212.1\|1269731_1272104_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
AVU97213.1\|1272100_1272925_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
AVU97214.1\|1272914_1273493_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
AVU97215.1\|1273589_1273817_-	phage virulence factor	NA	NA	NA	NA
AVU97216.1\|1273923_1274136_+	hypothetical protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
AVV00619.1\|1274198_1274264_+	hypothetical protein	NA	NA	NA	NA
AVU97217.1\|1274928_1275474_-\|transposase	transposase	NA	NA	NA	NA
AVU97218.1\|1275720_1275858_-	hypothetical protein	NA	NA	NA	NA
AVU97219.1\|1276336_1277830_-	type III secretion system protein	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
AVU97220.1\|1278234_1280034_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
AVU97221.1\|1280050_1281025_+	S26 family signal peptidase	NA	NA	NA	NA
AVU97222.1\|1281298_1281979_+	ribonuclease 3	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
AVU97223.1\|1281975_1282881_+	GTPase Era	NA	NA	NA	NA
AVU97224.1\|1282892_1283621_+	DNA repair protein RecO	NA	NA	NA	NA
AVU97225.1\|1283632_1284364_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AVU97226.1\|1284363_1284744_+	holo-ACP synthase	NA	NA	NA	NA
AVU97227.1\|1284855_1285116_-	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
AVU97228.1\|1285153_1286080_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
AVU97229.1\|1286195_1287392_+	MFS transporter	NA	NA	NA	NA
AVU97230.1\|1287413_1288331_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AVU97231.1\|1288369_1289218_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AVU97232.1\|1289333_1290227_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
AVU97233.1\|1290237_1291599_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AVU97234.1\|1291602_1292238_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
AVU97235.1\|1292262_1292814_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
1298661:1298677	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1663554 : 1675845

Salmonella_phage(45.45%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU97560.1\|1663554_1665921_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
AVV00633.1\|1666249_1667239_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.4e-190	97.3
AVU97561.1\|1667253_1667622_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
AVU97562.1\|1667650_1668982_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
AVU97563.1\|1669278_1669608_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
AVU97564.1\|1670200_1671442_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
AVU97565.1\|1671444_1671972_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
AVU97566.1\|1672349_1672793_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
AVU97567.1\|1672846_1674676_-	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
AVU97568.1\|1675023_1675314_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
AVU97569.1\|1675341_1675845_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_3

1747896 : 1757067

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU97639.1\|1747896_1748844_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AVU97640.1\|1748827_1749559_+	ABC transporter permease	NA	NA	NA	NA
AVU97641.1\|1749539_1749647_-	hypothetical protein	NA	NA	NA	NA
AVU97642.1\|1749706_1750438_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AVU97643.1\|1750660_1752346_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AVU97644.1\|1752342_1753062_+	DNA-binding response regulator	NA	NA	NA	NA
AVU97645.1\|1753108_1753576_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AVU97646.1\|1753632_1754163_-	hypothetical protein	NA	NA	NA	NA
AVU97647.1\|1754334_1754793_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AVU97648.1\|1755033_1757067_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1825375 : 1835881

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU97703.1\|1825375_1826779_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
AVU97704.1\|1826956_1827850_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AVU97705.1\|1828226_1829312_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AVU97706.1\|1829311_1830211_+	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
AVV00636.1\|1830258_1831137_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	9.3e-109	65.5
AVU97707.1\|1831137_1831689_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
AVU97708.1\|1831694_1832687_+	protein RfbI	NA	NA	NA	NA
AVU97709.1\|1832683_1833457_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AVU97710.1\|1833461_1834541_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
AVU97711.1\|1834567_1835881_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

1921875 : 1972625

Salmonella_phage(89.06%)

portal,tail,lysis,integrase,head,protease,capsid,holin,plate,terminase

attL 1916453:1916467|attR 1932929:1932943

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1916453:1916467	attL	NA	NA	NA	NA
AVU97795.1\|1921875_1922349_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
AVU97796.1\|1922996_1923287_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
AVU97797.1\|1923658_1924456_-	protein MtfA	NA	NA	NA	NA
AVU97798.1\|1924747_1925737_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AVU97799.1\|1925738_1925981_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
AVU97800.1\|1926005_1926575_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
AVU97801.1\|1926578_1927412_-	hypothetical protein	Q8HAA7	Salmonella_phage	4.7e-163	100.0
AVU97802.1\|1927408_1928026_-	hypothetical protein	Q8HAA6	Salmonella_phage	2.6e-113	100.0
AVU97803.1\|1928022_1928538_-	DUF262 domain-containing protein	Q8HAA5	Salmonella_phage	7.4e-98	100.0
AVU97804.1\|1928534_1928765_-	hypothetical protein	Q8HAA4	Salmonella_phage	2.0e-34	100.0
AVU97805.1\|1928835_1929375_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AVU97806.1\|1929511_1930339_-	DUF2303 domain-containing protein	Q8HAA2	Salmonella_phage	7.5e-153	100.0
AVU97807.1\|1930396_1930768_-	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
AVU97808.1\|1930865_1931051_+	hypothetical protein	NA	NA	NA	NA
AVU97809.1\|1931582_1932278_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
AVU97810.1\|1932251_1932437_+	amino acid permease	NA	NA	NA	NA
AVU97811.1\|1932375_1932600_+	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AVU97812.1\|1932628_1933183_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
1932929:1932943	attR	NA	NA	NA	NA
AVU97813.1\|1933179_1934337_+	peptidase	Q8HA97	Salmonella_phage	4.2e-218	100.0
AVU97814.1\|1934333_1934558_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AVU97815.1\|1934554_1935373_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
AVU97816.1\|1935332_1935857_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	2.4e-96	100.0
AVU97817.1\|1935856_1936750_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
AVU97818.1\|1936746_1937136_+	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
AVU97819.1\|1937152_1938013_+	DNA-binding protein	Q8HA92	Salmonella_phage	2.9e-163	100.0
AVV00641.1\|1938020_1939010_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	9.2e-190	97.6
AVU97820.1\|1939020_1939644_+	hypothetical protein	Q8HA89	Salmonella_phage	9.1e-119	100.0
AVV00642.1\|1939776_1940034_+	hypothetical protein	Q8HA88	Salmonella_phage	5.2e-44	100.0
AVU97821.1\|1939963_1940398_-	hypothetical protein	NA	NA	NA	NA
AVU97822.1\|1940559_1940904_+\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	5.3e-44	100.0
AVU97823.1\|1940906_1941521_+	endolysin	Q8HA86	Salmonella_phage	9.3e-116	100.0
AVU97824.1\|1941517_1942003_+\|lysis	lysis protein	Q8HA85	Salmonella_phage	5.9e-81	100.0
AVU97825.1\|1942215_1942635_+	hypothetical protein	Q8HA84	Salmonella_phage	4.8e-71	100.0
AVU97826.1\|1942854_1943157_+	hypothetical protein	Q8HA83	Salmonella_phage	3.6e-52	100.0
AVU97827.1\|1943217_1943568_+	HNH endonuclease	Q8HA82	Salmonella_phage	2.5e-65	100.0
AVU97828.1\|1943684_1944188_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	3.6e-89	100.0
AVU97829.1\|1944184_1945918_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	100.0
AVU97830.1\|1945929_1946112_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
AVU97831.1\|1946111_1947353_+\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.0e-242	99.8
AVU97832.1\|1947294_1947981_+\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	6.5e-126	100.0
AVU97833.1\|1947995_1949201_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.6e-223	100.0
AVU97834.1\|1949251_1949452_+	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
AVU97835.1\|1949454_1949778_+\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
AVU97836.1\|1949774_1950179_+\|head,tail	head-tail adaptor protein	Q8HAC9	Salmonella_phage	1.4e-72	100.0
AVU97837.1\|1950150_1950663_+	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
AVU97838.1\|1950659_1951220_+	hypothetical protein	Q8HAC7	Salmonella_phage	3.0e-105	100.0
AVU97839.1\|1951223_1951388_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
AVU97840.1\|1951377_1952874_+\|tail	phage tail protein	Q8HAC5	Salmonella_phage	2.7e-278	100.0
AVU97841.1\|1952873_1953230_+\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
AVU97842.1\|1953226_1953553_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
AVU97843.1\|1953637_1955566_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.8
AVU97844.1\|1955599_1956940_+	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.7e-251	99.6
AVU97845.1\|1956936_1957995_+\|plate	baseplate protein	Q8HAC0	Salmonella_phage	1.3e-202	100.0
AVU97846.1\|1957994_1958528_+\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	1.4e-96	100.0
AVU97847.1\|1958532_1958946_+	hypothetical protein	Q8HAB8	Salmonella_phage	1.1e-75	100.0
AVU97848.1\|1958917_1959463_+\|head	head assembly protein	Q8HAB7	Salmonella_phage	9.2e-99	100.0
AVU97849.1\|1959497_1960019_+\|tail	phage tail protein	Q8HAB6	Salmonella_phage	2.9e-94	100.0
AVU97850.1\|1960021_1960609_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
AVU97851.1\|1960595_1962158_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	2.6e-287	100.0
AVU97852.1\|1962157_1962727_+\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	7.3e-107	100.0
AVU97853.1\|1963011_1964019_-	non-LEE encoded effector protein NleB	Q8HAB2	Salmonella_phage	7.9e-197	100.0
AVU97854.1\|1964231_1964453_+	DNA-binding protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
AVU97855.1\|1964566_1964782_-	hypothetical protein	NA	NA	NA	NA
AVU97856.1\|1964863_1965106_+	hypothetical protein	NA	NA	NA	NA
AVU97857.1\|1965083_1965245_+	hypothetical protein	NA	NA	NA	NA
AVU97858.1\|1965371_1965791_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AVU97859.1\|1965793_1967062_+	protein UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
AVU97860.1\|1967516_1967729_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AVV00643.1\|1967739_1967928_+	cold-shock protein	NA	NA	NA	NA
AVU97861.1\|1968188_1969385_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
AVU97862.1\|1970034_1970334_+	hypothetical protein	NA	NA	NA	NA
AVU97863.1\|1970425_1971121_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AVU97864.1\|1971194_1972625_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

2079031 : 2106895

Escherichia_phage(20.0%)

integrase,tail,protease

attL 2080531:2080545|attR 2099018:2099032

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV00647.1\|2079031_2079886_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
AVV00649.1\|2079945_2080440_-	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
2080531:2080545	attL	NA	NA	NA	NA
AVU97978.1\|2080629_2080860_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
AVU97979.1\|2080913_2081447_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
AVU97980.1\|2081703_2081871_-	lytic enzyme	NA	NA	NA	NA
AVU97981.1\|2081935_2082124_-	hypothetical protein	NA	NA	NA	NA
AVU97982.1\|2082596_2083478_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
AVU97983.1\|2083574_2083775_-	phage virulence factor	NA	NA	NA	NA
AVU97984.1\|2083965_2084082_-\|tail	phage tail protein	NA	NA	NA	NA
AVU97985.1\|2084344_2084470_+	arsenic transporter	NA	NA	NA	NA
AVU97986.1\|2084598_2084865_+	hypothetical protein	NA	NA	NA	NA
AVU97987.1\|2085617_2086232_-	disulfide bond formation protein B	NA	NA	NA	NA
AVU97988.1\|2086241_2086400_-	hypothetical protein	NA	NA	NA	NA
AVU97989.1\|2086532_2087447_-	protein PagO	NA	NA	NA	NA
AVV00650.1\|2088064_2088265_+	hypothetical protein	NA	NA	NA	NA
AVU97990.1\|2088555_2088813_+	hypothetical protein	NA	NA	NA	NA
AVU97991.1\|2088750_2089119_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
AVU97992.1\|2090582_2090723_-	hypothetical protein	NA	NA	NA	NA
AVU97993.1\|2090888_2091158_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
AVU97994.1\|2091204_2091399_+	hypothetical protein	NA	NA	NA	NA
AVU97995.1\|2091527_2091947_+	N-acetyltransferase	NA	NA	NA	NA
AVU97996.1\|2092334_2092811_-	hypothetical protein	NA	NA	NA	NA
AVU97997.1\|2093140_2093536_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.2e-16	32.8
AVU97998.1\|2094219_2094942_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AVU97999.1\|2095226_2095391_+	hypothetical protein	NA	NA	NA	NA
AVU98000.1\|2095614_2096265_+	serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
AVU98001.1\|2096283_2096475_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AVU98002.1\|2096585_2096825_-	DUF1480 domain-containing protein	NA	NA	NA	NA
AVV00651.1\|2096939_2098379_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AVU98003.1\|2098456_2101096_-	MCE family protein	NA	NA	NA	NA
2099018:2099032	attR	NA	NA	NA	NA
AVU98004.1\|2101058_2102342_-	paraquat-inducible protein A	NA	NA	NA	NA
AVU98005.1\|2102383_2102968_+	GAF domain-containing protein	NA	NA	NA	NA
AVU98006.1\|2103065_2103752_+	RNA chaperone ProQ	NA	NA	NA	NA
AVU98007.1\|2103771_2105820_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AVU98008.1\|2106013_2106895_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_7

2690137 : 2777895

118

Enterobacteria_phage(31.58%)

portal,tail,lysis,integrase,capsid,terminase,tRNA,transposase,head

attL 2760199:2760213|attR 2774597:2774611

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU98570.1\|2690137_2690665_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AVU98571.1\|2690661_2690769_-	hypothetical protein	NA	NA	NA	NA
AVU98572.1\|2690974_2691421_+	DUF441 domain-containing protein	NA	NA	NA	NA
AVU98573.1\|2691400_2692195_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVU98574.1\|2692295_2693480_+	cyanate MFS transporter	NA	NA	NA	NA
AVU98575.1\|2693598_2693946_+	DUF488 domain-containing protein	NA	NA	NA	NA
AVU98576.1\|2693931_2694243_-	hypothetical protein	NA	NA	NA	NA
AVU98577.1\|2694311_2694563_-	DUF333 domain-containing protein	NA	NA	NA	NA
AVU98578.1\|2694758_2694857_+	hypothetical protein	NA	NA	NA	NA
AVU98579.1\|2694995_2695244_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AVU98580.1\|2695251_2695437_-	hypothetical protein	NA	NA	NA	NA
AVU98581.1\|2695558_2696200_-	hypothetical protein	NA	NA	NA	NA
AVU98582.1\|2696429_2696612_-	DUF1869 domain-containing protein	NA	NA	NA	NA
AVU98583.1\|2696614_2696977_-	DUF1971 domain-containing protein	NA	NA	NA	NA
AVV00679.1\|2696947_2697133_+	hypothetical protein	NA	NA	NA	NA
AVU98584.1\|2697149_2697788_-	leucine efflux protein	NA	NA	NA	NA
AVU98585.1\|2697984_2698530_-	chorismate mutase	NA	NA	NA	NA
AVU98586.1\|2698612_2698762_+	hypothetical protein	NA	NA	NA	NA
AVU98587.1\|2698840_2699089_+	histidine kinase	NA	NA	NA	NA
AVU98588.1\|2699343_2700192_-	transcriptional regulator	NA	NA	NA	NA
AVV00680.1\|2700260_2700854_-	LuxR family transcriptional regulator	NA	NA	NA	NA
AVU98589.1\|2700998_2701787_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
AVU98590.1\|2701895_2702546_-	metal-binding protein ZinT	NA	NA	NA	NA
AVU98591.1\|2702739_2703066_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
AVU98592.1\|2703259_2704393_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
AVU98593.1\|2704474_2705065_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
AVU98594.1\|2705058_2705856_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.8e-11	31.2
AVU98595.1\|2705849_2706662_-	ABC transporter permease	NA	NA	NA	NA
AVU98596.1\|2706651_2707626_-	ABC transporter permease	NA	NA	NA	NA
AVU98597.1\|2707625_2709260_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVU98598.1\|2709941_2710256_+	hypothetical protein	NA	NA	NA	NA
AVU98599.1\|2710404_2710935_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
AVU98600.1\|2711017_2712061_-	hypothetical protein	NA	NA	NA	NA
AVU98601.1\|2712399_2712870_-	heat-shock protein	NA	NA	NA	NA
AVU98602.1\|2713018_2713291_-	hypothetical protein	NA	NA	NA	NA
AVU98603.1\|2713490_2713616_-	hypothetical protein	NA	NA	NA	NA
AVU98604.1\|2713993_2714338_+	lysozyme inhibitor	NA	NA	NA	NA
AVU98605.1\|2715574_2716132_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
AVU98606.1\|2716943_2717207_+	virulence protein PagD	NA	NA	NA	NA
AVU98607.1\|2717338_2717551_+	cold-shock protein CspH	NA	NA	NA	NA
AVU98608.1\|2717965_2718487_+	lipoprotein	NA	NA	NA	NA
AVU98609.1\|2718677_2718917_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AVU98610.1\|2719405_2720194_+	lipoprotein EnvF	NA	NA	NA	NA
AVU98611.1\|2720515_2720719_+	hypothetical protein	NA	NA	NA	NA
AVU98612.1\|2720772_2721021_-	hypothetical protein	NA	NA	NA	NA
AVU98613.1\|2721175_2722300_-	DUF3626 domain-containing protein	NA	NA	NA	NA
AVU98614.1\|2722747_2722912_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-20	92.6
AVU98615.1\|2723213_2723885_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	59.9
AVU98616.1\|2724009_2724195_+	hypothetical protein	NA	NA	NA	NA
AVU98617.1\|2724204_2726307_-	type III secretion system effector E3 ubiquitin transferase SspH1	Q9MBL9	Phage_Gifsy-2	1.0e-28	48.5
AVU98618.1\|2727836_2727962_-	arsenic transporter	NA	NA	NA	NA
AVU98619.1\|2728224_2728341_+\|tail	phage tail protein	NA	NA	NA	NA
AVU98620.1\|2728531_2728732_+	phage virulence factor	NA	NA	NA	NA
AVU98621.1\|2728829_2729414_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-87	84.8
AVU98622.1\|2729413_2731855_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	2.5e-87	62.0
AVU98623.1\|2731908_2732151_-	hypothetical protein	NA	NA	NA	NA
AVU98624.1\|2732189_2735552_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.9
AVU98625.1\|2735613_2736261_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
AVU98626.1\|2736158_2736896_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
AVU98627.1\|2736902_2737601_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
AVU98628.1\|2737610_2737940_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
AVU98629.1\|2737942_2741038_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
AVU98630.1\|2741009_2741348_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AVU98631.1\|2741344_2741740_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AVU98632.1\|2741790_2742537_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AVU98633.1\|2742544_2742946_-\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AVU98634.1\|2742934_2744185_+\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	1.6e-215	99.2
AVU98635.1\|2744233_2744812_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.7e-82	80.7
AVU98636.1\|2744839_2745223_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
AVU98637.1\|2745233_2745599_-	DNA packaging protein	NA	NA	NA	NA
AVU98638.1\|2745656_2746685_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AVU98639.1\|2746739_2747087_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AVU98640.1\|2747099_2748596_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	4.3e-98	52.7
AVU98641.1\|2748585_2750166_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	5.6e-189	62.8
AVU98642.1\|2750162_2750366_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
AVU98643.1\|2750349_2752281_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.3e-259	65.9
AVU98644.1\|2752252_2752798_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AVU98645.1\|2752842_2753049_-	hypothetical protein	NA	NA	NA	NA
AVU98646.1\|2753083_2753485_+	inhibitor of g-type lysozyme	NA	NA	NA	NA
AVV00681.1\|2753711_2754167_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	8.0e-56	78.8
AVU98647.1\|2754484_2755024_-	lysozyme	S5MQK2	Escherichia_phage	5.7e-77	74.1
AVV00682.1\|2755001_2755304_-	alpha/beta hydrolase	NA	NA	NA	NA
AVV00683.1\|2755553_2756021_+	DUF2441 domain-containing protein	NA	NA	NA	NA
AVU98648.1\|2756032_2756251_-	hypothetical protein	NA	NA	NA	NA
AVU98649.1\|2756404_2756593_-	hypothetical protein	NA	NA	NA	NA
AVU98650.1\|2756727_2756916_+	hypothetical protein	NA	NA	NA	NA
AVU98651.1\|2756835_2757396_-	hypothetical protein	A0A2R2Z302	Escherichia_phage	1.1e-41	71.1
AVU98652.1\|2757477_2757666_-	hypothetical protein	NA	NA	NA	NA
AVU98653.1\|2757662_2758217_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	3.4e-64	65.3
AVU98654.1\|2758213_2758510_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	3.9e-35	79.1
AVU98655.1\|2758491_2758686_-	hypothetical protein	S4TNP0	Salmonella_phage	1.4e-12	61.5
AVU98656.1\|2758682_2759282_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	1.7e-93	81.0
AVU98657.1\|2759316_2759565_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
AVU98658.1\|2759681_2759915_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
AVU98659.1\|2760173_2760365_-	hypothetical protein	G8C7S2	Escherichia_phage	1.1e-17	68.9
2760199:2760213	attL	NA	NA	NA	NA
AVU98660.1\|2760476_2760758_-	ASCH domain-containing protein	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	3.2e-47	95.7
AVU98661.1\|2760750_2761404_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	6.3e-62	52.0
AVU98662.1\|2761406_2761877_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.1e-68	80.1
AVU98663.1\|2761878_2762544_-	hypothetical protein	A0A1V0E5L5	Salmonella_phage	2.8e-25	44.9
AVU98664.1\|2762558_2763251_-	phage replication protein	G8C7U6	Escherichia_phage	1.8e-78	60.2
AVU98665.1\|2763247_2764153_-	Replication protein O	A0A0M5M7Y1	Salmonella_phage	4.4e-170	96.3
AVU98666.1\|2764244_2764619_-	hypothetical protein	S4TTD7	Salmonella_phage	2.8e-62	97.6
AVU98667.1\|2764584_2764812_-	Rha family transcriptional regulator	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
AVU98668.1\|2764825_2765293_+	transcriptional regulator	K7PHG0	Enterobacteria_phage	3.2e-68	86.9
AVU98669.1\|2765444_2766530_+	ParA family protein	H2BD62	Pseudomonas_phage	1.5e-60	38.0
AVU98670.1\|2766637_2766844_-	hypothetical protein	K7P7I0	Enterobacteria_phage	7.4e-17	67.6
AVU98671.1\|2767554_2770266_+	exonuclease VIII	H6WRX1	Salmonella_phage	1.2e-125	39.6
AVU98672.1\|2770258_2771089_+	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	1.3e-104	72.0
AVU98673.1\|2771124_2771445_+	hypothetical protein	A0A222YY67	Escherichia_phage	1.8e-33	59.2
AVU98674.1\|2771437_2771770_+	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
AVU98675.1\|2771766_2772318_+	Eaa protein	A0A192Y7X3	Salmonella_phage	2.8e-10	34.5
AVU98676.1\|2772367_2772604_+	excisionase	NA	NA	NA	NA
AVU98677.1\|2772593_2773736_+\|integrase	integrase	O21929	Phage_21	8.2e-174	80.3
AVU98678.1\|2773848_2775099_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
2774597:2774611	attR	NA	NA	NA	NA
AVU98679.1\|2775270_2775936_+	23S rRNA pseudouridine synthase E	NA	NA	NA	NA
AVU98680.1\|2775932_2776262_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AVU98681.1\|2776273_2776735_+	NUDIX hydrolase	NA	NA	NA	NA
AVU98682.1\|2776788_2777895_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_8

2923785 : 3008521

Salmonella_phage(45.45%)

portal,tail,lysis,protease,tRNA,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU98832.1\|2923785_2924466_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
AVU98833.1\|2924811_2925021_-	hypothetical protein	NA	NA	NA	NA
AVU98834.1\|2925086_2925746_+	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
AVU98835.1\|2925832_2926162_+	sulfurtransferase TusE	NA	NA	NA	NA
AVU98836.1\|2926158_2926440_-	acylphosphatase	NA	NA	NA	NA
AVU98837.1\|2926488_2927268_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVU98838.1\|2927293_2927842_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AVU98839.1\|2928056_2929268_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AVU98840.1\|2929325_2929643_+	heat-shock protein HspQ	NA	NA	NA	NA
AVU98841.1\|2929687_2930104_-	CoA-binding protein	NA	NA	NA	NA
AVU98842.1\|2930274_2930937_+	DUF2057 domain-containing protein	NA	NA	NA	NA
AVU98843.1\|2931031_2931490_+	methylglyoxal synthase	NA	NA	NA	NA
AVU98844.1\|2931525_2933580_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AVU98845.1\|2933703_2934150_+	YccF domain-containing protein	NA	NA	NA	NA
AVU98846.1\|2934168_2936322_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AVU98847.1\|2936308_2936914_-	DNA transformation protein	NA	NA	NA	NA
AVU98848.1\|2937130_2937640_+	cell division inhibitor SulA	NA	NA	NA	NA
AVU98849.1\|2937996_2939049_+	outer membrane protein A	NA	NA	NA	NA
AVU98850.1\|2939120_2939573_-	macrodomain Ter protein	NA	NA	NA	NA
AVU98851.1\|2939758_2941519_+\|protease	Lon protease family protein	NA	NA	NA	NA
AVU98852.1\|2941587_2942106_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AVU98853.1\|2942205_2942373_-	ribosome modulation factor	NA	NA	NA	NA
AVU98854.1\|2942628_2943192_-	hypothetical protein	NA	NA	NA	NA
AVU98855.1\|2943188_2944829_-	paraquat-inducible protein B	NA	NA	NA	NA
AVU98856.1\|2944833_2946087_-	paraquat-inducible protein A	NA	NA	NA	NA
AVU98857.1\|2946101_2948009_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AVU98858.1\|2948021_2950130_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AVU98859.1\|2950228_2951338_+	MOSC domain-containing protein	NA	NA	NA	NA
AVU98860.1\|2951334_2951877_-	cell division protein ZapC	NA	NA	NA	NA
AVU98861.1\|2952042_2953053_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AVU98862.1\|2953260_2955873_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
AVU98863.1\|2956299_2956491_+	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AVU98864.1\|2956761_2957448_+	virulence protein	NA	NA	NA	NA
AVU98865.1\|2957432_2957732_+	hypothetical protein	NA	NA	NA	NA
AVU98866.1\|2957800_2958427_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AVU98867.1\|2959074_2960043_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.1e-195	100.0
AVU98868.1\|2960518_2961100_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AVU98869.1\|2961099_2963538_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
AVU98870.1\|2963591_2963834_-	hypothetical protein	NA	NA	NA	NA
AVU98871.1\|2963872_2967223_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
AVU98872.1\|2967294_2967999_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
AVU98873.1\|2967896_2968634_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
AVU98874.1\|2968643_2969339_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
AVU98875.1\|2969428_2969962_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AVU98876.1\|2970078_2970576_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
AVU98877.1\|2970674_2971007_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
AVV00691.1\|2971003_2973991_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
AVU98878.1\|2974070_2974400_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
AVU98879.1\|2974396_2974795_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
AVU98880.1\|2974840_2975590_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
AVU98881.1\|2975601_2976003_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
AVU98882.1\|2975999_2976566_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
AVU98883.1\|2976546_2976846_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
AVU98884.1\|2976838_2977162_-	recombinase RecA	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
AVV00693.1\|2977252_2979334_-	peptidase S14	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
AVV00692.1\|2979257_2980775_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
AVU98885.1\|2980801_2981008_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
AVU98886.1\|2981004_2983143_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
AVU98887.1\|2983099_2983633_-	DNA breaking-rejoining protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
AVV00695.1\|2983840_2984320_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
AVU98888.1\|2984337_2984790_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AVV00694.1\|2984773_2985103_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AVU98889.1\|2985378_2986065_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
AVU98890.1\|2986425_2986875_+	hypothetical protein	NA	NA	NA	NA
AVU98891.1\|2987010_2987136_-	hypothetical protein	NA	NA	NA	NA
AVU98892.1\|2987309_2987627_-	hypothetical protein	NA	NA	NA	NA
AVU98893.1\|2987693_2988491_-	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
AVU98894.1\|2988480_2988627_-	hypothetical protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
AVU98895.1\|2988623_2989235_-	protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
AVU98896.1\|2989237_2989444_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AVU98897.1\|2989443_2990046_-	hypothetical protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
AVU98898.1\|2990128_2990350_-	hypothetical protein	NA	NA	NA	NA
AVU98899.1\|2990461_2990695_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
AVU98900.1\|2990986_2991277_-	hypothetical protein	NA	NA	NA	NA
AVU98901.1\|2991354_2991666_-	hypothetical protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
AVU98902.1\|2991662_2992010_-	DNA-binding protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
AVU98903.1\|2992020_2992770_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	1.1e-137	99.2
AVU98904.1\|2992772_2993756_-	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
AVU98905.1\|2993840_2994215_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AVU98906.1\|2994180_2994420_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
AVU98907.1\|2994539_2994950_+	transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
AVU98908.1\|2994999_2995260_+	hypothetical protein	NA	NA	NA	NA
AVU98909.1\|2995252_2995411_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
AVU98910.1\|2995432_2995732_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
AVU98911.1\|2995858_2998744_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	97.3
AVU98912.1\|2998706_2999864_+	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AVU98913.1\|2999906_3000146_+	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AVU98914.1\|3000186_3000435_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AVU98915.1\|3000479_3001772_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	2.9e-252	99.5
AVU98916.1\|3001966_3003169_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AVU98917.1\|3003246_3004683_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AVU98918.1\|3004927_3006142_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA
AVU98919.1\|3006228_3006462_+	hypothetical protein	NA	NA	NA	NA
AVU98920.1\|3006458_3006920_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AVU98921.1\|3007120_3008521_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1

DBSCAN-SWA_9

3072687 : 3081419

Enterobacteria_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU98970.1\|3072687_3073942_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
AVU98971.1\|3074405_3074864_-\|transposase	IS200/IS605 family transposase IS200F	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
AVU98972.1\|3074820_3075003_-	hypothetical protein	NA	NA	NA	NA
AVU98973.1\|3075055_3077332_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AVU98974.1\|3077362_3077683_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AVU98975.1\|3078006_3078228_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AVU98976.1\|3078182_3078377_-	hypothetical protein	NA	NA	NA	NA
AVU98977.1\|3078357_3080304_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
AVU98978.1\|3080300_3081419_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_10

4450125 : 4497169

Burkholderia_phage(40.91%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV00190.1\|4450125_4451124_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AVV00191.1\|4451211_4452522_-	conjugal transfer protein	NA	NA	NA	NA
AVV00192.1\|4452768_4453284_+	transcriptional regulator Zur	NA	NA	NA	NA
AVV00193.1\|4453382_4453592_-	CsbD family protein	NA	NA	NA	NA
AVV00759.1\|4453613_4453727_-	hypothetical protein	NA	NA	NA	NA
AVV00194.1\|4453723_4455049_-	MATE family efflux transporter	NA	NA	NA	NA
AVV00195.1\|4455227_4455836_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AVV00196.1\|4455944_4456313_-	diacylglycerol kinase	NA	NA	NA	NA
AVV00197.1\|4456483_4458904_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
AVV00198.1\|4459002_4459875_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AVV00199.1\|4459888_4460386_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AVV00200.1\|4460566_4461484_-	maltose operon protein MalM	NA	NA	NA	NA
AVV00201.1\|4461647_4463006_-	maltoporin	NA	NA	NA	NA
AVV00202.1\|4463094_4464204_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AVV00203.1\|4464565_4465756_+	maltose-binding periplasmic protein	NA	NA	NA	NA
AVV00204.1\|4465887_4467432_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AVV00205.1\|4467446_4468337_+	maltose ABC transporter permease	NA	NA	NA	NA
AVV00206.1\|4468502_4468913_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AVV00207.1\|4469055_4471152_-	YjbH domain-containing protein	NA	NA	NA	NA
AVV00208.1\|4471151_4471889_-	hypothetical protein	NA	NA	NA	NA
AVV00209.1\|4471885_4472524_-	YjbF family lipoprotein	NA	NA	NA	NA
AVV00210.1\|4472587_4472830_-	outer membrane protein	NA	NA	NA	NA
AVV00211.1\|4473273_4474923_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AVV00212.1\|4475267_4476617_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AVV00213.1\|4476749_4477097_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AVV00214.1\|4477672_4477960_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
AVV00215.1\|4477962_4478568_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.2e-59	59.4
AVV00216.1\|4478580_4478895_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AVV00217.1\|4479054_4479510_+	hypothetical protein	NA	NA	NA	NA
AVV00218.1\|4479506_4479704_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AVV00219.1\|4479693_4481121_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AVV00220.1\|4481120_4481645_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AVV00221.1\|4481696_4482014_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AVV00222.1\|4481973_4482102_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AVV00223.1\|4482198_4484553_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	6.9e-66	30.6
AVV00224.1\|4484552_4485506_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AVV00225.1\|4485505_4485715_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AVV00226.1\|4485702_4486746_+	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AVV00227.1\|4486755_4487478_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
AVV00228.1\|4487805_4488168_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AVV00229.1\|4488164_4489094_+	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
AVV00230.1\|4489093_4490641_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AVV00231.1\|4490804_4491164_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AVV00232.1\|4491154_4492270_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
AVV00233.1\|4492262_4492895_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
AVV00234.1\|4492897_4494643_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
AVV00235.1\|4494647_4495253_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AVV00236.1\|4495249_4495705_+	hypothetical protein	NA	NA	NA	NA
AVV00237.1\|4495953_4496244_+	hypothetical protein	NA	NA	NA	NA
AVV00238.1\|4496440_4497169_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP025556

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

82082 : 91378

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV00881.1\|82082_82499_+	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9
AVV00863.1\|82682_83018_+	hypothetical protein	NA	NA	NA	NA
AVV00864.1\|83074_83641_+	DUF2913 domain-containing protein	NA	NA	NA	NA
AVV00865.1\|83672_84614_-\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
AVV00866.1\|85028_86234_+	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
AVV00867.1\|86230_87208_+	chromosome partitioning protein ParB	A0A1B0V750	Salmonella_phage	5.2e-84	53.2
AVV00868.1\|87289_88564_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.0e-156	64.5
AVV00869.1\|88563_88986_-	protein SamA	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
AVV00870.1\|89496_89967_+	hypothetical protein	NA	NA	NA	NA
AVV00871.1\|89959_90316_+	hypothetical protein	NA	NA	NA	NA
AVV00872.1\|90364_90553_+	hypothetical protein	NA	NA	NA	NA
AVV00873.1\|90697_91378_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025555

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP025556

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection