CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025566	Listeria monocytogenes strain ATCC 51779 plasmid pPIR00541, complete sequence	0 crisprs	NA	0	0	0	0
CP025567	Listeria monocytogenes strain ATCC 51779 chromosome, complete genome	2 crisprs	DinG,cas3,WYL,casR,DEDDh,csa3	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025567_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025567_2

542787-543075

Orphan

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRT

4 spacers

The CRISPR arrays of CP025567_2

>merge|CP025567|2|542787-543075|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTGTGAAATGTAAATCGATAAAAAAGATATTAGTAATTTATTTGCAATTTAGTTTTAGTTACTTATTGTGAAATGTAAATTGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGCGTTTTAGTTACTTATTGTGAAATGTAAATGCGATTTTTGTCAAAGGGACAGCGATGGGTTACAAGTTTTAGTTACTTATTGTGAAATGTAAATTTACCACCAAAGTCCCTACACTCAATACCACCAAAGCGTTTTAGTTACTTATTGTGAAATATAAAT

>CP025567|2|1|542787-543075|PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC
GTTTTAGTTACTTATTGTGAAATATAAAT

>CP025567|2|2|542787-543075|CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAAT	CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC
GTTTTAGTTACTTATTGTGAAATATAAAT

>CP025567|2|1|542787-543075|CRT
GTTTTAGTTACTTATTGTGAAATGTAAAT	CGATAAAAAAGATATTAGTAATTTATTTGCAATTTA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC
GTTTTAGTTACTTATTGTGAAATATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP025567.1\|AVU83016.1\|545931_547749_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
CP025567.1\|AVU83015.1\|545091_545550_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
CP025567.1\|AVU83003.1\|534598_536659_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
CP025567.1\|AVU85401.1\|547849_548281_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
CP025567.1\|AVU83006.1\|537776_538175_+\|hypothetical-protein	unknown	unknown	unknown
CP025567.1\|AVU83014.1\|544725_545085_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
CP025567.1\|AVU83009.1\|539894_540188_+\|PTS-galactitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
CP025567.1\|AVU83011.1\|541613_542549_+\|ribose-phosphate-pyrophosphokinase-2	unknown	unknown	gnl\|CDD\|234929
CP025567.1\|AVU83010.1\|540202_541474_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
CP025567.1\|AVU83007.1\|538185_538836_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
CP025567.1\|AVU83020.1\|551489_552905_+\|lincomycin-resistance-protein-LmrB	unknown	unknown	gnl\|CDD\|129794
CP025567.1\|AVU83018.1\|549878_550694_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP025567.1\|AVU83012.1\|543334_543913_+\|hypothetical-protein	unknown	unknown	unknown
CP025567.1\|AVU83008.1\|538832_539879_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
CP025567.1\|AVU83019.1\|550974_551343_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
CP025567.1\|AVU83017.1\|548327_549758_-\|capsule-biosynthesis-protein-CapA	unknown	unknown	gnl\|CDD\|225399
CP025567.1\|AVU83004.1\|536662_537265_+\|phosphosugar-isomerase	unknown	unknown	gnl\|CDD\|223865
CP025567.1\|AVU83005.1\|537292_537760_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
CP025567.1\|AVU83002.1\|533839_534490_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
CP025567.1\|AVU83013.1\|544020_544701_+\|GMP-synthase	unknown	unknown	gnl\|CDD\|153212

Protein	Function_ID	Function_description	E-value
CP025567.1\|AVU83016.1\|545931_547749_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.81836e-118
CP025567.1\|AVU83003.1\|534598_536659_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.36772e-80
CP025567.1\|AVU85401.1\|547849_548281_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
CP025567.1\|AVU83005.1\|537292_537760_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
CP025567.1\|AVU83009.1\|539894_540188_+\|PTS-galactitol-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
CP025567.1\|AVU83011.1\|541613_542549_+\|ribose-phosphate-pyrophosphokinase-2	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.26262e-153
CP025567.1\|AVU83010.1\|540202_541474_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
CP025567.1\|AVU83007.1\|538185_538836_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
CP025567.1\|AVU83020.1\|551489_552905_+\|lincomycin-resistance-protein-LmrB	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.18163e-80
CP025567.1\|AVU83018.1\|549878_550694_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
CP025567.1\|AVU83015.1\|545091_545550_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
CP025567.1\|AVU83008.1\|538832_539879_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
CP025567.1\|AVU83019.1\|550974_551343_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.33548e-41
CP025567.1\|AVU83017.1\|548327_549758_-\|capsule-biosynthesis-protein-CapA	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.95496e-100
CP025567.1\|AVU83004.1\|536662_537265_+\|phosphosugar-isomerase	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
CP025567.1\|AVU83014.1\|544725_545085_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
CP025567.1\|AVU83002.1\|533839_534490_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	5.85703e-62
CP025567.1\|AVU83013.1\|544020_544701_+\|GMP-synthase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	9.06055e-60

>CP025567.1|AVU83011.1|541613_542549_+|ribose-phosphate-pyrophosphokinase-2
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>CP025567.1|AVU83010.1|540202_541474_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>CP025567.1|AVU83009.1|539894_540188_+|PTS-galactitol-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>CP025567.1|AVU83008.1|538832_539879_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPNELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>CP025567.1|AVU83007.1|538185_538836_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>CP025567.1|AVU83006.1|537776_538175_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>CP025567.1|AVU83005.1|537292_537760_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>CP025567.1|AVU83004.1|536662_537265_+|phosphosugar-isomerase
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>CP025567.1|AVU83003.1|534598_536659_+|PTS-sugar-transporter-subunit-IIA
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANIATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>CP025567.1|AVU83002.1|533839_534490_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEITQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>CP025567.1|AVU83012.1|543334_543913_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>CP025567.1|AVU83013.1|544020_544701_+|GMP-synthase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPKSLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>CP025567.1|AVU83014.1|544725_545085_-|hypothetical-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>CP025567.1|AVU83015.1|545091_545550_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>CP025567.1|AVU83016.1|545931_547749_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>CP025567.1|AVU85401.1|547849_548281_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>CP025567.1|AVU83017.1|548327_549758_-|capsule-biosynthesis-protein-CapA
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>CP025567.1|AVU83018.1|549878_550694_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>CP025567.1|AVU83019.1|550974_551343_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVAVLLV
>CP025567.1|AVU83020.1|551489_552905_+|lincomycin-resistance-protein-LmrB
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGIALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK

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Crispr_ID: CP025567_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025567_3

2813884-2813994

Orphan

Consensus_repeat	Method
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025567_3

>merge|CP025567|3|2813884-2813994|CRISPRCasFinder
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAATGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCAAAGCGATGATTTAATCCTTCCCAGAACTTTCAAAA

>CP025567|3|3|2813884-2813994|CRISPRCasFinder
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	TGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCAA
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP025567.1\|AVU85224.1\|2806820_2807417_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
CP025567.1\|AVU85226.1\|2807900_2808752_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP025567.1\|AVU85230.1\|2810978_2811575_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
CP025567.1\|AVU85239.1\|2818991_2820506_-\|gluconate-kinase	unknown	unknown	gnl\|CDD\|212659
CP025567.1\|AVU85236.1\|2815119_2816484_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
CP025567.1\|AVU85234.1\|2814578_2814761_-\|DUF3188-domain-containing-protein	unknown	unknown	gnl\|CDD\|371501
CP025567.1\|AVU85228.1\|2809830_2810673_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223729
CP025567.1\|AVU85225.1\|2807420_2807795_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|184702
CP025567.1\|AVU85229.1\|2810718_2810964_-\|DUF2508-domain-containing-protein	unknown	unknown	gnl\|CDD\|378478
CP025567.1\|AVU85233.1\|2814096_2814561_-\|DUF3284-domain-containing-protein	unknown	unknown	gnl\|CDD\|378692
CP025567.1\|AVU85232.1\|2812030_2813770_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
CP025567.1\|AVU85227.1\|2808870_2809710_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
CP025567.1\|AVU85235.1\|2814763_2814985_-\|hypothetical-protein	unknown	unknown	unknown
CP025567.1\|AVU85223.1\|2805809_2806799_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
CP025567.1\|AVU85240.1\|2820621_2821560_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226309
CP025567.1\|AVU85231.1\|2811683_2812001_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
CP025567.1\|AVU85237.1\|2816925_2817081_+\|hypothetical-protein	unknown	unknown	unknown
CP025567.1\|AVU85238.1\|2817652_2818294_-\|hypothetical-protein	unknown	unknown	unknown
CP025567.1\|AVU85242.1\|2822690_2824430_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
CP025567.1\|AVU85241.1\|2821602_2822550_-\|cell-surface-protein	unknown	unknown	gnl\|CDD\|273478

Protein	Function_ID	Function_description	E-value
CP025567.1\|AVU85224.1\|2806820_2807417_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	3.29756e-82
CP025567.1\|AVU85226.1\|2807900_2808752_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	6.1079e-63
CP025567.1\|AVU85230.1\|2810978_2811575_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.77001e-132
CP025567.1\|AVU85239.1\|2818991_2820506_-\|gluconate-kinase	gnl\|CDD\|212659	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain.	0
CP025567.1\|AVU85236.1\|2815119_2816484_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	3.47828e-162
CP025567.1\|AVU85234.1\|2814578_2814761_-\|DUF3188-domain-containing-protein	gnl\|CDD\|371501	pfam11384, DUF3188, Protein of unknown function (DUF3188). This bacterial family of proteins has no known function.	1.21027e-11
CP025567.1\|AVU85228.1\|2809830_2810673_+\|aldo/keto-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	6.97706e-130
CP025567.1\|AVU85225.1\|2807420_2807795_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	1.1917e-48
CP025567.1\|AVU85229.1\|2810718_2810964_-\|DUF2508-domain-containing-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	2.68189e-15
CP025567.1\|AVU85233.1\|2814096_2814561_-\|DUF3284-domain-containing-protein	gnl\|CDD\|378692	pfam11687, DUF3284, Domain of unknown function (DUF3284). This family of proteins with unknown function appears to be restricted to Firmicutes.	5.35099e-31
CP025567.1\|AVU85232.1\|2812030_2813770_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
CP025567.1\|AVU85227.1\|2808870_2809710_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.49073e-86
CP025567.1\|AVU85223.1\|2805809_2806799_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
CP025567.1\|AVU85240.1\|2820621_2821560_-\|hypothetical-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.04876e-98
CP025567.1\|AVU85231.1\|2811683_2812001_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.53269e-41
CP025567.1\|AVU85242.1\|2822690_2824430_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
CP025567.1\|AVU85241.1\|2821602_2822550_-\|cell-surface-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.13667e-05

>CP025567.1|AVU85232.1|2812030_2813770_-|DNA-polymerase-III-subunit-gamma/tau
MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAASGSDVSDLKRQMEQMHQEIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQLIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETITSSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDADAEDGANPEAKKPAEDPFVAEAAKLVGEDLLEIKD
>CP025567.1|AVU85231.1|2811683_2812001_-|YbaB/EbfC-family-nucleoid-associated-protein
MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNIPGM
>CP025567.1|AVU85230.1|2810978_2811575_-|recombination-protein-RecR
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV
>CP025567.1|AVU85229.1|2810718_2810964_-|DUF2508-domain-containing-protein
MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQENWHKQKVLMRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK
>CP025567.1|AVU85228.1|2809830_2810673_+|aldo/keto-reductase
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI
>CP025567.1|AVU85227.1|2808870_2809710_+|Cof-type-HAD-IIB-family-hydrolase
MTTQAIILDIDGTLLNDDKQISPETKKALITAQENGVKLILASGRPTTGMHVYAEQLEMEKHHGLLVSYNGAKVVDCATNEELFNQALTVEEGKAVLEHMKQFEVKVMIDKEDYMYTNDVYDCYVPYRGEEINIIQYESRGGNFKLCEKDDLAAFLDYRLSKILTAGDPAYMQKNYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMGIHAENVIAFGDGHNDITMVEYAGTGIAMQNAVPELKAAASSVTLSNNEDGIAHVLNSLIPS
>CP025567.1|AVU85226.1|2807900_2808752_+|MurR/RpiR-family-transcriptional-regulator
MNILIKIRELTNLTNSEKELANYILANPKKTLQFKPKELATAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETSEEKDLNYDYPILESDTPYQIMTNLHQIYKGTIDETLNNADPEELVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
>CP025567.1|AVU85225.1|2807420_2807795_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MAKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRIGTSFDAVNEAIENNEANKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK
>CP025567.1|AVU85224.1|2806820_2807417_+|dihydroxyacetone-kinase-subunit-L
MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMARGLGELKKAFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDADTIDAVGLTKVIEAGLEGIEKRGKSHAGEKTMIDVWEPVVHALHQEDLTDDVVDAALQKTKDLKATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS
>CP025567.1|AVU85223.1|2805809_2806799_+|dihydroxyacetone-kinase-subunit-DhaK
MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLDELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSASLAKQLYERISNESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW
>CP025567.1|AVU85233.1|2814096_2814561_-|DUF3284-domain-containing-protein
MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKYQRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIETEKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ
>CP025567.1|AVU85234.1|2814578_2814761_-|DUF3188-domain-containing-protein
MKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIGCVFIVLKIRKDKKEKN
>CP025567.1|AVU85235.1|2814763_2814985_-|hypothetical-protein
MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNIEDEEKAAKIAKETIKATEIGSVLYFQVSVG
>CP025567.1|AVU85236.1|2815119_2816484_-|PTS-sugar-transporter-subunit-IIC
MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSIAVLLNAFFRDFPTDWGWTGFVEAMQPLIGINGYVYNGTLAIVSIIFAFSLGYNLSKAYEVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDVATLPKEFAGIYGFFSLSQVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVLAPVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSKRADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEEEMKA
>CP025567.1|AVU85237.1|2816925_2817081_+|hypothetical-protein
MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPATVEEKKKQDAEKKTDDN
>CP025567.1|AVU85238.1|2817652_2818294_-|hypothetical-protein
MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEVAYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPSTNKYYSGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYTYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDEDKEMVIFSIK
>CP025567.1|AVU85239.1|2818991_2820506_-|gluconate-kinase
MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETGKAEESPTEIFDAVLTSIQAVMKNINTEELAGISFSSAMHSLIMVGSNGELLTECITWADGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIKSYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDFLPKVVPETYQLAGVKKEYAELMGIPENLPFIIGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTDQFQIDSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVPPGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEAVSAPDDIIYVTGGISAHDAWCKLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKDLNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS
>CP025567.1|AVU85240.1|2820621_2821560_-|hypothetical-protein
MKKLLSGLIVVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVNQSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGWIDSRAFTNIGKPTIADAVPALWNSKKAIITTKPKSTTATTYFFQKNSAGNWYEVRHFTSHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDKAYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGCVAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN
>CP025567.1|AVU85241.1|2821602_2822550_-|cell-surface-protein
MKKFHGLILTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKTEPAEPTKDTTVTPPQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK
>CP025567.1|AVU85242.1|2822690_2824430_-|thiol-reductant-ABC-exporter-subunit-CydC
MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFAALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTLIAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPALPTFEEETKEIERINTENVVLKAENLTFAYNEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNDVEVEKLRPQIPELTSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAKKVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPRYKRLYQLDRPIEL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025567_2	2.3\|542946\|35\|CP025567\|PILER-CR,CRISPRCasFinder,CRT	542946-542980	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10173	1	0.971
CP025567_2	2.3\|542946\|35\|CP025567\|PILER-CR,CRISPRCasFinder,CRT	542946-542980	35	NC_009813	Listeria phage B054, complete genome	10139-10173	2	0.943

1. spacer 2.3|542946|35|CP025567|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaa	Protospacer
*****************.*****************

2. spacer 2.3|542946|35|CP025567|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaa	Protospacer
*****************.**.**************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

120335 : 126860

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU82625.1\|120335_120788_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
AVU82626.1\|120793_121129_-	XRE family transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
AVU82627.1\|121345_121774_+	hypothetical protein	NA	NA	NA	NA
AVU82628.1\|121785_122202_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	39.3
AVU82629.1\|122479_122869_+	DUF5072 domain-containing protein	NA	NA	NA	NA
AVU82630.1\|122881_123394_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
AVU82631.1\|123441_123744_+	segregation and condensation protein B	NA	NA	NA	NA
AVU82632.1\|123785_124190_+	phenylalanine racemase	NA	NA	NA	NA
AVU82633.1\|124176_126045_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
AVU82634.1\|126041_126860_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

DBSCAN-SWA_2

1122443 : 1129866

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU83585.1\|1122443_1122827_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
AVU83586.1\|1122848_1123832_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
AVU83587.1\|1123846_1124860_+	glycosyl transferase	A0A1V0SAH6	Catovirus	7.9e-11	32.0
AVU83588.1\|1125068_1126559_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
AVU83589.1\|1126570_1127395_+	NAD(+) synthetase	G3MA24	Bacillus_virus	7.4e-68	52.6
AVU83590.1\|1127407_1127716_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AVU83591.1\|1127776_1128181_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
AVU83592.1\|1128309_1129866_+	GMP synthase (glutamine-hydrolyzing)	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_3

1243924 : 1321273

Listeria_phage(82.76%)

portal,capsid,holin,tail,head,integrase,protease,tRNA,terminase

attL 1243808:1243824|attR 1286738:1286754

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1243808:1243824	attL	NA	NA	NA	NA
AVU83718.1\|1243924_1245079_-\|integrase	site-specific integrase	A8ATC7	Listeria_phage	3.4e-204	92.4
AVU83719.1\|1245213_1245648_-	hypothetical protein	Q8W5Y2	Listeria_phage	6.5e-55	81.2
AVU83720.1\|1245663_1246233_-	DUF4352 domain-containing protein	R4IBV3	Listeria_phage	9.8e-11	92.3
AVU83721.1\|1246283_1246736_-	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	1.1e-78	90.7
AVU83722.1\|1246752_1247076_-	XRE family transcriptional regulator	A0A059T6G1	Listeria_phage	4.7e-34	69.2
AVU83723.1\|1247705_1247909_-	hypothetical protein	NA	NA	NA	NA
AVU83724.1\|1247975_1248167_+	XRE family transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
AVU83725.1\|1248188_1248431_+	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
AVU83726.1\|1248433_1248619_+	hypothetical protein	A8ATD3	Listeria_phage	3.7e-28	98.4
AVU83727.1\|1249142_1249433_+	hypothetical protein	A0A059T7V3	Listeria_phage	1.8e-40	89.4
AVU83728.1\|1249429_1249633_+	hypothetical protein	NA	NA	NA	NA
AVU83729.1\|1249826_1250102_+	hypothetical protein	R4ICD2	Listeria_phage	3.4e-41	94.3
AVU83730.1\|1250098_1250542_+	hypothetical protein	NA	NA	NA	NA
AVU83731.1\|1250558_1250867_+	hypothetical protein	NA	NA	NA	NA
AVU83732.1\|1250863_1251427_+	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	1.6e-58	61.5
AVU83733.1\|1251485_1251998_+	pentapeptide repeat-containing protein	M4H0V1	Listeria_phage	1.0e-30	86.9
AVU83734.1\|1251998_1252628_+	hypothetical protein	A0A191KBJ8	Streptococcus_virus	2.4e-66	57.9
AVU83735.1\|1252646_1252814_+	hypothetical protein	NA	NA	NA	NA
AVU83736.1\|1252917_1253094_+	hypothetical protein	A0A076G7F4	Listeria_phage	5.5e-21	86.2
AVU83737.1\|1253090_1253492_+	hypothetical protein	A8ATD9	Listeria_phage	7.8e-71	95.5
AVU83738.1\|1253488_1253695_+	hypothetical protein	A0A059T6C7	Listeria_phage	1.7e-29	92.6
AVU83739.1\|1253694_1253892_+	hypothetical protein	A0A059T654	Listeria_phage	5.7e-27	91.8
AVU83740.1\|1253888_1254323_+	hypothetical protein	A8ATS7	Listeria_phage	2.5e-38	52.8
AVU83741.1\|1254525_1254909_+	hypothetical protein	A8ATE8	Listeria_phage	2.5e-66	100.0
AVU83742.1\|1254910_1255390_+	hypothetical protein	R4IBM0	Listeria_phage	1.9e-76	97.5
AVU83743.1\|1255402_1256092_+	DNA-binding protein	R4IDY8	Listeria_phage	6.8e-123	91.7
AVU83744.1\|1256170_1257412_+	ATP-dependent helicase	A8ATF1	Listeria_phage	1.5e-213	95.8
AVU83745.1\|1257434_1257917_+	DUF669 domain-containing protein	A8ATF2	Listeria_phage	9.3e-87	98.8
AVU83746.1\|1257939_1260228_+	DNA primase	A8ATF3	Listeria_phage	0.0e+00	93.9
AVU83747.1\|1260561_1260879_+	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	9.2e-51	95.1
AVU83748.1\|1260880_1261093_+	hypothetical protein	NA	NA	NA	NA
AVU85414.1\|1261682_1262222_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	1.2e-71	74.9
AVU83749.1\|1262218_1262497_+	hypothetical protein	NA	NA	NA	NA
AVU83750.1\|1262732_1262960_+	hypothetical protein	NA	NA	NA	NA
AVU83751.1\|1262972_1263398_+	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
AVU83752.1\|1263495_1264239_+	DUF559 domain-containing protein	NA	NA	NA	NA
AVU83753.1\|1264479_1264794_+	HNH endonuclease	A8ATF8	Listeria_phage	3.2e-56	98.1
AVU83754.1\|1264842_1265199_+	hypothetical protein	A8AT94	Listeria_phage	2.6e-46	98.0
AVU83755.1\|1265195_1266839_+\|terminase	terminase	A8AT95	Listeria_phage	0.0e+00	98.5
AVU83756.1\|1266850_1267981_+\|portal	phage portal protein	A8AT96	Listeria_phage	1.7e-203	93.1
AVU83757.1\|1267977_1268784_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	3.8e-133	93.3
AVU83758.1\|1268810_1269962_+\|capsid	phage major capsid protein	A8AT98	Listeria_phage	2.7e-201	93.2
AVU83759.1\|1270148_1270448_+	hypothetical protein	A8ATA0	Listeria_phage	5.3e-48	100.0
AVU83760.1\|1270431_1270797_+\|head,tail	phage head-tail adapter protein	A8ATA1	Listeria_phage	1.3e-64	100.0
AVU83761.1\|1270793_1271195_+	hypothetical protein	A8ATA2	Listeria_phage	2.1e-68	100.0
AVU83762.1\|1271191_1271575_+	DUF3168 domain-containing protein	A8ATA3	Listeria_phage	3.8e-67	100.0
AVU83763.1\|1271596_1272184_+\|tail	phage tail protein	A8ATA4	Listeria_phage	5.8e-107	99.5
AVU83764.1\|1272254_1272587_+	hypothetical protein	A8ATA5	Listeria_phage	1.8e-52	99.1
AVU83765.1\|1272802_1277614_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	70.3
AVU83766.1\|1277601_1279251_+\|tail	phage tail protein	A0A059T682	Listeria_phage	0.0e+00	99.5
AVU83767.1\|1279263_1281558_+	hypothetical protein	A0A059T7Y6	Listeria_phage	0.0e+00	94.0
AVU83768.1\|1281547_1282642_+	carbohydrate-binding protein CenC	A0A059T7R4	Listeria_phage	2.2e-184	87.9
AVU83769.1\|1282689_1282992_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.7e-38	93.0
AVU83770.1\|1282991_1283249_+\|holin	phage holin	A8ATB7	Listeria_phage	3.2e-25	69.0
AVU83771.1\|1283248_1284091_+	peptidase M15	A0A059T7Y8	Listeria_phage	9.5e-127	81.6
AVU83772.1\|1284194_1285193_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	3.9e-71	44.8
AVU83773.1\|1285407_1285614_-	hypothetical protein	A0A059T7Z0	Listeria_phage	1.3e-16	82.8
AVU83774.1\|1286204_1286438_+	hypothetical protein	R4IDW6	Listeria_phage	2.8e-28	78.9
AVU83775.1\|1286434_1286626_+	hypothetical protein	R4IBI5	Listeria_phage	8.9e-25	88.9
AVU83776.1\|1287119_1288478_+	DUF1254 domain-containing protein	NA	NA	NA	NA
1286738:1286754	attR	NA	NA	NA	NA
AVU83777.1\|1288519_1289113_-	hypothetical protein	NA	NA	NA	NA
AVU83778.1\|1289266_1289674_-	VOC family protein	NA	NA	NA	NA
AVU83779.1\|1289838_1290438_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	5.8e-30	41.0
AVU83780.1\|1290469_1290730_-	hypothetical protein	NA	NA	NA	NA
AVU83781.1\|1290853_1292266_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.3e-51	31.8
AVU83782.1\|1292290_1292554_+	DUF3116 domain-containing protein	NA	NA	NA	NA
AVU83783.1\|1292721_1293198_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
AVU83784.1\|1293235_1293481_-	hypothetical protein	NA	NA	NA	NA
AVU83785.1\|1293477_1294683_-	MFS transporter	NA	NA	NA	NA
AVU83786.1\|1294679_1294889_-	hypothetical protein	NA	NA	NA	NA
AVU83787.1\|1294887_1295547_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
AVU83788.1\|1295588_1295783_-	hypothetical protein	NA	NA	NA	NA
AVU83789.1\|1295849_1296698_-	YitT family protein	NA	NA	NA	NA
AVU83790.1\|1297316_1298030_+	trehalose operon repressor	NA	NA	NA	NA
AVU83791.1\|1298060_1299707_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
AVU83792.1\|1299725_1301210_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
AVU83793.1\|1301325_1301778_+	NUDIX domain-containing protein	NA	NA	NA	NA
AVU83794.1\|1301824_1302289_-	hypothetical protein	NA	NA	NA	NA
AVU83795.1\|1302477_1303398_+	alpha/beta hydrolase	NA	NA	NA	NA
AVU83796.1\|1303417_1304665_-	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.2e-106	51.8
AVU83797.1\|1304648_1305479_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.3e-47	42.4
AVU83798.1\|1305614_1306754_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
AVU83799.1\|1306834_1307230_-	XRE family transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
AVU83800.1\|1307380_1307596_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVU83801.1\|1307714_1308248_+	hypothetical protein	NA	NA	NA	NA
AVU83802.1\|1308265_1308931_+	hypothetical protein	NA	NA	NA	NA
AVU83803.1\|1309192_1310131_+	hypothetical protein	NA	NA	NA	NA
AVU83804.1\|1310245_1311529_+	trigger factor	NA	NA	NA	NA
AVU83805.1\|1311714_1312974_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
AVU83806.1\|1313092_1313659_+	signal peptidase I	NA	NA	NA	NA
AVU83807.1\|1313693_1314263_+	signal peptidase I	NA	NA	NA	NA
AVU83808.1\|1314364_1314907_+	signal peptidase I	NA	NA	NA	NA
AVU83809.1\|1314916_1315780_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
AVU83810.1\|1315776_1316562_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
AVU83811.1\|1316695_1317556_+	DNA-protecting protein DprA	NA	NA	NA	NA
AVU83812.1\|1317827_1319906_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-107	37.7
AVU83813.1\|1319968_1321273_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA

DBSCAN-SWA_4

1863173 : 1871459

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU84302.1\|1863173_1863740_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
AVU84303.1\|1863736_1864786_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
AVU84304.1\|1864804_1866232_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	8.1e-54	31.9
AVU84305.1\|1866216_1868436_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.0e-160	41.2
AVU84306.1\|1868428_1869112_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AVU84307.1\|1869115_1869361_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AVU84308.1\|1869372_1870086_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.3e-41	38.3
AVU84309.1\|1870166_1871459_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

DBSCAN-SWA_5

2386263 : 2424364

Listeria_phage(95.92%)

tail,capsid,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU84794.1\|2386263_2386695_+	XRE family transcriptional regulator	A8ATJ2	Listeria_phage	2.4e-25	81.7
AVU84795.1\|2386691_2387192_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	3.2e-66	72.4
AVU84796.1\|2387397_2388396_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	2.3e-71	44.8
AVU84797.1\|2388498_2389344_-	peptidase M15	A0A059T7Y8	Listeria_phage	7.2e-135	86.9
AVU84798.1\|2389343_2389610_-\|holin	phage holin	A0A059T684	Listeria_phage	9.8e-38	93.1
AVU84799.1\|2389609_2389912_-	hypothetical protein	A0A059T5E6	Listeria_phage	2.2e-38	92.0
AVU84800.1\|2389962_2392128_-	hypothetical protein	A8ATW1	Listeria_phage	0.0e+00	94.5
AVU84801.1\|2392140_2393709_-\|tail	phage tail protein	A8ATW0	Listeria_phage	5.8e-303	99.0
AVU84802.1\|2393705_2398505_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	89.6
AVU84803.1\|2398509_2398821_-	hypothetical protein	A0A0B5D116	Listeria_phage	1.0e-41	95.6
AVU84804.1\|2398817_2399249_-	hypothetical protein	A0A0B5D0B8	Listeria_phage	1.1e-73	98.6
AVU84805.1\|2399304_2399991_-	hypothetical protein	A0A0B5CYK8	Listeria_phage	5.2e-115	98.2
AVU84806.1\|2399995_2400367_-	hypothetical protein	A0A0B5CTY4	Listeria_phage	1.1e-63	100.0
AVU84807.1\|2400363_2400681_-	hypothetical protein	A8ATV4	Listeria_phage	3.5e-50	94.3
AVU84808.1\|2400670_2401036_-	hypothetical protein	A0A0B5D114	Listeria_phage	1.7e-64	99.2
AVU84809.1\|2401035_2401389_-	hypothetical protein	A8ATV2	Listeria_phage	1.4e-60	99.1
AVU84810.1\|2401558_2402431_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	4.5e-164	99.7
AVU84811.1\|2402453_2403008_-	hypothetical protein	A8ATU9	Listeria_phage	1.1e-88	99.5
AVU84812.1\|2403103_2404147_-\|capsid	minor capsid protein	A0A0B5D111	Listeria_phage	5.3e-196	97.7
AVU84813.1\|2404151_2405711_-	hypothetical protein	A0A0B5D0A6	Listeria_phage	3.5e-292	96.7
AVU84814.1\|2405725_2407045_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	5.4e-254	95.4
AVU84815.1\|2407037_2407763_-	TerS	A0A0B5CTX0	Listeria_phage	2.2e-84	72.4
AVU84816.1\|2407806_2408034_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	6.2e-33	96.0
AVU84817.1\|2408285_2408858_-	RNA polymerase subunit sigma-70	A0A0B5CTZ3	Listeria_phage	2.7e-85	82.6
AVU84818.1\|2408947_2409103_-	DUF3954 domain-containing protein	A0A0B5D186	Listeria_phage	7.5e-22	96.1
AVU84819.1\|2409530_2409935_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	7.6e-58	84.3
AVU84820.1\|2409879_2410062_-	hypothetical protein	A8ASP6	Listeria_phage	2.2e-17	81.0
AVU84821.1\|2410080_2410563_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	8.5e-56	73.1
AVU84822.1\|2410563_2410818_-	hypothetical protein	A0A059T5G2	Listeria_phage	3.4e-40	92.8
AVU84823.1\|2410817_2411024_-	hypothetical protein	NA	NA	NA	NA
AVU84824.1\|2411020_2411293_-	hypothetical protein	A8ATE2	Listeria_phage	2.0e-46	100.0
AVU84825.1\|2411289_2411619_-	hypothetical protein	A8ATE1	Listeria_phage	1.1e-57	100.0
AVU84826.1\|2411619_2411829_-	hypothetical protein	A8ATE0	Listeria_phage	1.7e-32	100.0
AVU84827.1\|2411825_2412227_-	hypothetical protein	A8ATD9	Listeria_phage	2.6e-74	100.0
AVU84828.1\|2412285_2412846_-	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	9.4e-107	100.0
AVU84829.1\|2412850_2413306_-	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	1.5e-81	92.1
AVU84830.1\|2413302_2414226_-	DnaD domain protein	A0A0B5D175	Listeria_phage	1.9e-120	79.8
AVU84831.1\|2414239_2414878_-	single-stranded DNA-binding protein	A8ASN3	Listeria_phage	3.0e-77	74.3
AVU84832.1\|2414882_2415359_-	hypothetical protein	A8ASN2	Listeria_phage	2.0e-57	94.9
AVU84833.1\|2415355_2415550_-	hypothetical protein	A0A059T6E8	Listeria_phage	1.8e-28	95.3
AVU84834.1\|2415851_2416040_-	hypothetical protein	A8ATY3	Listeria_phage	2.5e-27	95.2
AVU84835.1\|2416147_2416363_-	hypothetical protein	Q9T176	Listeria_phage	6.1e-22	73.2
AVU84836.1\|2416359_2416893_-	hypothetical protein	A0A059T5F0	Listeria_phage	1.1e-75	84.4
AVU84837.1\|2417013_2417787_-	phage repressor protein/antirepressor Ant	A8ATY0	Listeria_phage	2.4e-140	99.6
AVU84838.1\|2417850_2418054_+	KTSC domain-containing protein	A0A1S5S8T9	Streptococcus_phage	2.0e-14	56.7
AVU84839.1\|2418218_2418455_-	hypothetical protein	A0A059T5E9	Listeria_phage	1.8e-35	94.9
AVU84840.1\|2418466_2418661_-	hypothetical protein	A0A059T6E5	Listeria_phage	6.3e-26	96.9
AVU84841.1\|2419309_2419567_+	hypothetical protein	NA	NA	NA	NA
AVU84842.1\|2419563_2419785_-	hypothetical protein	NA	NA	NA	NA
AVU84843.1\|2419788_2420022_-	XRE family transcriptional regulator	NA	NA	NA	NA
AVU84844.1\|2420177_2420600_+	XRE family transcriptional regulator	A0A0B5CYL9	Listeria_phage	4.8e-47	69.1
AVU84845.1\|2420615_2421041_+	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	2.1e-66	84.4
AVU84846.1\|2421056_2421662_+	hypothetical protein	NA	NA	NA	NA
AVU84847.1\|2421674_2422097_+	hypothetical protein	NA	NA	NA	NA
AVU84848.1\|2422135_2423083_+	hypothetical protein	NA	NA	NA	NA
AVU84849.1\|2423476_2424364_+	hypothetical protein	A0A0B5CYL8	Listeria_phage	5.6e-162	100.0

DBSCAN-SWA_6

2569960 : 2577804

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVU84986.1\|2569960_2570932_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
AVU84987.1\|2570939_2571908_-	gluconeogenesis factor	A1IMD5	Streptococcus_phage	6.7e-68	43.3
AVU84988.1\|2571909_2572785_-	RNase adaptor protein RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-08	29.7
AVU84989.1\|2572892_2574623_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.3e-175	54.0
AVU84990.1\|2574664_2575726_-	galactose mutarotase	NA	NA	NA	NA
AVU84991.1\|2575742_2576726_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.6e-51	37.2
AVU84992.1\|2576844_2577804_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025567

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection