CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	1 crisprs	csa3	0	3	0
CP028349	Pantoea vagans strain PV989 chromosome, complete genome	4 crisprs	cas3,DEDDh,DinG,csa3,WYL	1	3	6
CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	0 crisprs	NA	0	0	0
CP028352	Pantoea vagans strain PV989 plasmid pPV989-94, complete sequence	0 crisprs	NA	0	0	10

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP028350_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028350_1

51138-51396

Orphan

Consensus_repeat	Method
TTACTGATTACAGTGAACG	PILER-CR

3 spacers

The CRISPR arrays of CP028350_1

>merge|CP028350|1|51138-51396|PILER-CR
TTGCTGATTATAGTGAACGTCCTGATTCAGGCAGGACAGCGTCTCTTTCTGCTGATTCCCGTTGAGCACTTTACTGATTACAGTGAATGACTGCATTCACGTTCAACACGGCCGGCGTGCGTACTGTATTGAGGCGCTTTAACTTATCAGTATTGCCAGCGTGACACTGTTACTGATTACAGTGAATGTTTGCCGACTGGCATCGTCAGAGCTCCGGCGTACTGCGGATTCCCCTGTCGGTTACTGATTACAGTGAACG

>CP028350|1|1|51138-51396|PILER-CR
TTGCTGATTATAGTGAACG	TCCTGATTCAGGCAGGACAGCGTCTCTTTCTGCTGATTCCCGTTGAGCACT
TTACTGATTACAGTGAATG	ACTGCATTCACGTTCAACACGGCCGGCGTGCGTACTGTATTGAGGCGCTTTAACTTATCAGTATTGCCAGCGTGACACTG
TTACTGATTACAGTGAATG	TTTGCCGACTGGCATCGTCAGAGCTCCGGCGTACTGCGGATTCCCCTGTCGG
TTACTGATTACAGTGAACG

Protein	Signature genes	Signature genes Name	Protein_function
CP028350.1\|AVV39398.1\|55313_55598_-\|hypothetical-protein	unknown	unknown	unknown
CP028350.1\|AVV39399.1\|55697_56708_-\|transketolase	unknown	unknown	gnl\|CDD\|226467
CP028350.1\|AVV39789.1\|52425_53625_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|376033
CP028350.1\|AVV39391.1\|44591_45140_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP028350.1\|AVV39389.1\|43491_43815_-\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377512
CP028350.1\|AVV39400.1\|56709_57552_-\|transketolase	unknown	unknown	gnl\|CDD\|238970
CP028350.1\|AVV39393.1\|45601_46831_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223597
CP028350.1\|AVV39396.1\|49941_50871_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	unknown
CP028350.1\|AVV39387.1\|41730_42696_+\|acyltransferase	unknown	unknown	gnl\|CDD\|225813
CP028350.1\|AVV39388.1\|42645_43374_-\|thiamine-biosynthesis-protein-ThiJ	unknown	unknown	gnl\|CDD\|153233
CP028350.1\|AVV39402.1\|58917_59667_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187594
CP028350.1\|AVV39397.1\|53632_54604_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|370113
CP028350.1\|AVV39392.1\|45140_45479_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119344
CP028350.1\|AVV39395.1\|48106_49477_-\|succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|184426
CP028350.1\|AVV39404.1\|60966_62418_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
CP028350.1\|AVV39405.1\|62500_62722_-\|hypothetical-protein	unknown	unknown	unknown
CP028350.1\|AVV39390.1\|43811_44480_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
CP028350.1\|AVV39401.1\|57564_58863_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP028350.1\|AVV39403.1\|59864_60767_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP028350.1\|AVV39394.1\|46924_48103_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737

Protein	Function_ID	Function_description	E-value
CP028350.1\|AVV39399.1\|55697_56708_-\|transketolase	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	8.87233e-138
CP028350.1\|AVV39789.1\|52425_53625_+\|ParA-family-protein	gnl\|CDD\|376033	pfam18607, HTH_54, ParA helix turn helix domain. The accurate segregation of DNA is essential for the faithful inheritance of genetic information. Segregation of the prototypical P1 plasmid par system requires two proteins, ParA and ParB, and a centromere. When bound to ATP, ParA mediates segregation by interacting with centromere-bound ParB, but when bound to ADP, ParA fulfills a different function: DNA-binding transcription autoregulation. ParA consists of an elongated N-terminal alpha-helix which mediates dimerization, a winged-HTH and a Walker-box containing C-domain. This entry describes the N-terminal alpha helix domain combined with the winged HTH region.	1.19638e-54
CP028350.1\|AVV39391.1\|44591_45140_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.79028e-11
CP028350.1\|AVV39389.1\|43491_43815_-\|AzlD-domain-containing-protein	gnl\|CDD\|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	5.95183e-07
CP028350.1\|AVV39400.1\|56709_57552_-\|transketolase	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	4.72987e-124
CP028350.1\|AVV39393.1\|45601_46831_+\|hypothetical-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.24289e-117
CP028350.1\|AVV39387.1\|41730_42696_+\|acyltransferase	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	3.77997e-16
CP028350.1\|AVV39388.1\|42645_43374_-\|thiamine-biosynthesis-protein-ThiJ	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	3.38193e-92
CP028350.1\|AVV39402.1\|58917_59667_-\|short-chain-dehydrogenase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	7.69848e-87
CP028350.1\|AVV39397.1\|53632_54604_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|370113	pfam08775, ParB, ParB family. ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognizes A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site.	5.21075e-50
CP028350.1\|AVV39394.1\|46924_48103_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.33276e-36
CP028350.1\|AVV39395.1\|48106_49477_-\|succinate-semialdehyde-dehydrogenase	gnl\|CDD\|184426	PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase; Provisional.	0
CP028350.1\|AVV39404.1\|60966_62418_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.10119e-124
CP028350.1\|AVV39390.1\|43811_44480_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	7.72536e-39
CP028350.1\|AVV39401.1\|57564_58863_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.19155e-101
CP028350.1\|AVV39403.1\|59864_60767_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.47016e-63
CP028350.1\|AVV39392.1\|45140_45479_-\|hypothetical-protein	gnl\|CDD\|119344	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	1.76767e-06

>CP028350.1|AVV39396.1|49941_50871_+|RepB-family-plasmid-replication-initiator-protein
MADKDNENKALLEPFLSVTKNSGEVIQLHPNKNNTVQPVALMRLGLFVPTLKSTARGKSGAMASTDATKELKNLTLVKAEGYEKITITGARLDMDNDFKTWAGIIQSFSRYPTKGDTVTLPFIDFVKMCGIPSANSSAALRKRLDASLRRIATNTLSFEGNGKAYHTHLVQSAYYDREKDIVRIQADPKLFELYNFDHKVLLQLRAISRLKRKESAQALYTFLESLPTNPAPISLARLRMRLNLGSKTTTQNHVVRRAMEQLKEIGYLDYSEVKRGRSVFFIIHSRTPKLDGIGNLESIDSLDEIEFED
>CP028350.1|AVV39395.1|48106_49477_-|succinate-semialdehyde-dehydrogenase
MTEHAVSRNPATGEILARYPLQNSTELEKTLAESASAFTAWQRSSMSDRVRVLRQLGEQIRLREQDLSRMITLEMGKPITQARAEVLKCANLCDWYAEHGPAMLADQPTQIADAWQRFRPVGVILAVMPWNFPLWQVLRGAVSMLLAGNTYLLKHAPNVMGSATLMAELFTATDLPAGGFNLINVDNDGVSVAIKDDRIAAVAVTGSVRAGAAIAAQAGAALKKTVLELGGSDPFIVLADADLDEAVKSAVIGRFQNTGQVCMAAKRFIVEAPIAEEFEKRFTAAVQALKMGDPLDENTFLGPMARADLRDELDGQVKATLSEGARLVLGGEKVAGQGNYYAPTILADVTSTMTAFKQELFGPVAAIAVARDPQHALEIANESEFGLSATVWSGNEETADRLALQLEVGAVFINGNGASDPRVTIGGVKKSGYGRELSHFGVHEFCNVQTVWKNRR
>CP028350.1|AVV39394.1|46924_48103_+|FAD-dependent-oxidoreductase
MPQRIAVIGAGVLGLAVAQSLSRRGAQVTVFDKSLPGSGTSQISYAWVNANGKEPGHYHELNAQAINEHKRWQASHRAWPRWLLETGSLEWAADESSLRQLTQRAAKLATLDYPVEKRCRAALLGALPGLRLDPRIQHAWFFPSECLLYPSLFIASLLADLRASGGQLVCNNEVTTLTESGRDVHLTLASGDEWHGDQLVLATGRWAPELISQCGLELAMTDANRADPVACSFLAQTQPLPIPLNCNLITPELNVRPDGGGRLMLQALDLDQHADPSRPASPDGLTGKEMLRRLRRLFNNAEGARIERIETGQRSRPADGLPALGYISDSARVYLMVSHSGMTLAPLLGRLVAEEMLSGTPSPMLSRFTPHRLLRPLSEVVKTAPAYLPAAQ
>CP028350.1|AVV39393.1|45601_46831_+|hypothetical-protein
MTLSSLISGDPRLPVAVLSGFLGAGKTTLLNHILNNREGRRIAVIVNDMSEINIDAALVRNGDAQLSRTDEKLVEMSNGCICCTLREDLLLEVKRLAQAGRFDHLVIESTGISEPLPVAETFTFEDETGESLSAYARLDSMITVVDGFNFLRDYRSVDDLQSRGESLGEQDERSVVDLLVDQIEFCDLLVLNKTDLLSPAELHQLQGMLRALNPHARMVNSEFGQVPLDFLLNTGRFDFDRAAQAPGWLQTLRGEHQPESEEYGIRSVVYRARRPFHPQRFWEVVNHQLDGVIRSKGYFWLATRPEFAAMWSQAGAVARQGYAGRWWVSVPRDNWPQDADSLNFIAEQWQEGTGDARQELVFIGIDMDEQHIIAALDHALLTPYEMAAGPEHWVTLDDPVPAWFDEMTA
>CP028350.1|AVV39392.1|45140_45479_-|hypothetical-protein
MQQLTLVPRLMPVVRRGEKTSTIRWQEGDIVTGPLRLVNQQDEADTVIVWVTRIDTLRLNEVAAKLGKEHEWPDAVLLEGMREHYPAIRLSSEVQLITHLTPAETRQKLAER
>CP028350.1|AVV39391.1|44591_45140_+|XRE-family-transcriptional-regulator
MNTPISIIANALVRERQRSGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRLLEPDARRLQVIRRGEGLTVTADLADYQAVLLASCPPGVRRDIYLLEVQPGSERISQPHIPNTIEHIIIAKGRALVGPVDSAVELDVGDYITYPGDELHIFRALEADTLALLVIEHS
>CP028350.1|AVV39390.1|43811_44480_-|branched-chain-amino-acid-ABC-transporter-permease
MLFPQMQSLDKGVIKAIFLVCLADGIVGLSYGSLASADGFPLWVPLALSTLVLAGASEFLFIGIVAGGGSPFTAAAAGLLVNARHLPFGIAVKDLVGKGPQGWFGCHIMNDESVVFGISQPQLAQRRSAYWLCGIGIGLIWPVSVMVGAAIGQFIPDVSVIGLDAVFPAILIALIFPALRQRRTRIPATVGALLSLLATPLVPAGMPVLFSLLGLLTWRSRK
>CP028350.1|AVV39389.1|43491_43815_-|AzlD-domain-containing-protein
MTHQGLIIAGIAMLAAGTYLMRFAGVRLGNRLPISERTQQMLSDAATVLLLAVAATTTLFEGQHFAGVARVAGVGFALLLAWRRAPLIVIILGAAAMTALLRFLGVA
>CP028350.1|AVV39388.1|42645_43374_-|thiamine-biosynthesis-protein-ThiJ
MNRPLQIGLLLFPDVTQLDLTGPWEVFARMPGVECHLIWKDRQPVRSDRGLSILPTAIFDDCPLLDVICVPGGPGQIALMSDEETLDFLRRQAEQAQWVTSVCTGSLVLGAAGLLKGYRATSHWSSIDQLALLGAEPVNQRVVRDRNRISGAGVTSGIDFALTLVAEIAGDAVARAVQLQMEYDPEPPFSCGSPQTAPPEEVAQARAKIAEFIATRRAATEHAARRLQADQLTDAGDAQQQQ
>CP028350.1|AVV39387.1|41730_42696_+|acyltransferase
MNKTGLAMLKTLACITAVSFFTLYQSYDSYHYDVNLTLNVLSFISTIATPLYFLLSGYLDAGELHTPAWQLGKIRRILLIFIFWFSFFWFAGMHHKGYLIQPWFVIALIVIYVSHPLIDWLIQRPGVMAAGILLLLVLAFTYDLLASLYPDQRAFSLLPQYRIWTWVLYYLTGRLMAAPRVMQLLTSPRVIKVSLLLLPAVYLFTWLYERYYFIARFLATHNDVVLTGSQVYLLVVLIVISINAIRLPEKAQWLTTFLTTLGKTMTGVYILHYLIFGVLAAAIRIQTLGDKLLVIALTLILSMALSLLLLRIPGVRKLISL
>CP028350.1|AVV39789.1|52425_53625_+|ParA-family-protein
MANDDKQVMKVAQRSERMLLSLTDQIQAQKQELHENTYYQVYAKAALAKLPKLTRASVDYAVNEMEESGYQFDKRAAGSSVKYAMSIQNIIDIYHHRGVPKYRDRHSEAYTIFVGNLKGGVSKTVSTVSLAHALRAHPHLLFEDLRILVIDLDPQSSATMFLNHERSVGLVEATAAQAMLQNVTRDELLNEFIVPSIIPGVDVLPASIDDAFIASSWDQLCAEHLPQQNVHAVLYDNVIAKLKKDYDFIFIDSGPHLDAFLKNAIAASDLLMTPVPPAQVDFHSTLKYLTRLPELIAIIEDSGATCRLQGNIGFMSKLSNKADHKLCHSLAKEIFGGDMLDAALPRLDGFERCGESFDTVISANPSTYVGSSEALKNARSAAEDFAKAVFDRIEFIRLN
>CP028350.1|AVV39397.1|53632_54604_+|ParB/RepB/Spo0J-family-partition-protein
MSAKRITIGRTFSQTPLENDTPDSQHNQTFVLATGKRALFRFERIAASDVENKTFVTMETNGRDQAGLTPDSLRDIIRTIKLQQFFPAIGVMRDDRIEILDGSRRRAAALYCKTGLDVLVTDAAISADEARRLAQDIQTAREHNLREVGMRLLALKEGGLSQKEIAENQGLSQAKVTRALQAASVPSDLISLFPNHAELTYPDYKALLQAADKLSESGQSVEALINSISREIDVVCAREGLAEDELKNHILRLIRQGSQTLMKEPEKDKTQATALWSFADKDRFARKKVRGRMFSYEFNRQSKELQEELDKVIAETLKKYLNR
>CP028350.1|AVV39398.1|55313_55598_-|hypothetical-protein
MTIAVLNAGYASTDSDEPASRLSVLLNLFSSAFTVNSFTVSHVPFLSSRFSFSAVEHILSSALLNTVNLTEVADFRSLALFLSNPAHAVRINRK
>CP028350.1|AVV39399.1|55697_56708_-|transketolase
MSSQPQKKRLTTSAMIASIAAEGQPTVSAPFGQALVSLAEQRSDVVGMTADLSKYTDLHLFADAFPQRFYQMGMAEQLLMSAAAGMAREGFMPFVTTYAVFASRRAYDFICMAIAEENLNVKIACALPGLTTGYGPSHQATDDLAIFRGMPNLTIIDPCDALEISQVIPAIAEHQGPVYLRLLRGKVPLVLDKYDYRYQHGKAQRLRTGKDAVIISSGLMTMRALEAADVLEKQGIEIGVVHSPVIKPLDEETILREAGEALHHNQLVITAENHSITGGLGEAIAGLLMRNHVTPRFKQIALPDAFLAAGALPTLHDRYGISADAMVRQITAWLEA
>CP028350.1|AVV39400.1|56709_57552_-|transketolase
MTDPRHSSHTLSLPQRARNIRRHALLMGQIQGQGYIGQALGAADLLAVSYFHAMNYRPDEPEWEERDRFYLSIGHYAIALYAALLEAGVIPEEERETYGTDESRLPMSGMAAYTPGMEITGGSLGHGLGIAVGACLGLKQKGSQARIYNLLSDGELNEGSTWEAAMSASHWQLDNLIAIIDVNNQQADGHSSEILAFEPIVERWQAFGWYTQRVDGNDIAALQHAFDAARSWPEPQPRVIICDTRMGKGVPFLESREKTHFIRVDADEWDTALTALEQGV
>CP028350.1|AVV39401.1|57564_58863_-|MFS-transporter
MTTLNLSAASVARDITYRKIAWRLMPWLMLCYLCAYLDRVNVGFAKLQMMDDLSLSETVYGLGAGIFFLGYFFFEVPSNLILHRVGARRWIARIMITWGVISALFAFVETAWQFYLLRFLLGVAEAGLAPGLLLYLTYWFPSHRRARMTVLWFVAIPLSGMIGGPLSGWIMATFAGFHGWAGWQWMFMLEAIPTLVMGFVVLLVLKDRVEQAEWLDDDEKRRVRADLDEDNQQKACHGTVKAFVADRRLWLLALIYFCVVMGQYALTFWLPTLVRNSGVSEPLHIGLLTSLPYLCAIIFMLLAGRSGDRHRERRWHLIVPMLIGLSGLTLATLLSHNVSLSLFSLCIAAAGILSASSLFWMLPTNLLGGVSAAAGIAAVNCIANLAGFFSPWLIGSITTATGSPASGMYFIAAVLLGGALSVLRIRAADVNR
>CP028350.1|AVV39402.1|58917_59667_-|short-chain-dehydrogenase
MLLENKVVIITGAASQRGIGRATAACFAQHGARVVVLDLDLQAAQASALSCGDGHLGLATDVTDPLSVHRAIDQVLEHYGRIDVLVNNAGITQPVKTLEIGIEDYNRILDVNLRGTLLMSQAVIPTMQRQKSGSIVCLSSVSAQRGGGIFGGPHYSAAKAGVLGLTKAMAREFGPDQIRINALTPGLIQTDITGGLLQDERRHAILDGIPLGRLGTASDVANAALFLASDLSGYLTGITLDVNGGMLIH
>CP028350.1|AVV39403.1|59864_60767_+|LysR-family-transcriptional-regulator
MEKQSEHLPSIKSLRVFEQVAHFGNVARAAEELSITPSAASHQLAKLERELGCILFNRSAKGVTLTLSGEHYLREIGPILLCLAQATARISNEKARSNLRIHCAPSFGLLWLLPRIHKFRDSYPEFQLTLSCSYENLSFSRDNIDIAIRHGFPDWNAFEIKTIRHEKMSVLASPDYLKQHPVSQAADLIHHALILSESPLIQWPQWFAAQQLPQPDKEWLFRFDRSYMSLEAAMLGHGLIFESELLAEDYLRSGKLVRVLTEQHSLPVSAHHLVFPRGFAQYPRVAHFLSWIQEELRTLI
>CP028350.1|AVV39404.1|60966_62418_+|sugar-porter-family-MFS-transporter
MSTNTPDAGEAGDHAPADTVRQRIFLVVLVATMGALAFGYDTGIISGALPYMTSPPDQGGLGLNSFTEGLVASSLVFGAAIGSFLSGFFSDRFGRRITLRTLAVIFVLGSLGTALAPSVNVMVAMRFLLGIAVGGGSSTVPVFIAEIAGPRLRAPLVSRNELMIVTGQLIAYVASTLLSYLLHDEHLWRYMLAIAMVPGFLLFIGTFFVPASPHWLVAEGRLKEAKKILKYLRETPREVRHEMAQMKKQARAAERGPDAKTLIREKWVIRLMIIGVGLGFVAQFTGVNGFMYYTPIILKQTGLGTSASIAATIGNGVVSVLATFVGIWAISRFPRRTMLITGLCLVITAQILLGSVMTFMSSGLMQSYLALGCILLFLFCMQMCISPVYWLMMSELFPMQLRGVLTGGAVSLQWIFNAVVAFGFPPIMAYAGSTTFFIFAAINVGSLIFVMTMVPETRGKSLEEIESHMKEKFGEKPKEAEAC
>CP028350.1|AVV39405.1|62500_62722_-|hypothetical-protein
MVHPGQHAEQMKSEYSAEPAPIFVSGHASLKRRFQPSAAYEGYAGFWRFQPEIARHGRKPSRKIELITVNETA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028350_1	1.1\|51157\|51\|CP028350\|PILER-CR	51157-51207	51	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	51157-51207	0	1.0
CP028350_1	1.3\|51326\|52\|CP028350\|PILER-CR	51326-51377	52	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	51326-51377	0	1.0
CP028350_1	1.3\|51326\|52\|CP028350\|PILER-CR	51326-51377	52	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	525005-525056	0	1.0
CP028350_1	1.1\|51157\|51\|CP028350\|PILER-CR	51157-51207	51	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	528067-528117	1	0.98
CP028350_1	1.1\|51157\|51\|CP028350\|PILER-CR	51157-51207	51	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	524836-524886	3	0.941
CP028350_1	1.2\|51227\|80\|CP028350\|PILER-CR	51227-51306	80	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	51227-51306	20	0.75
CP028350_1	1.2\|51227\|80\|CP028350\|PILER-CR	51227-51306	80	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	524906-524985	22	0.725

1. spacer 1.1|51157|51|CP028350|PILER-CR matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 0, identity: 1.0

tcctgattcaggcaggacagcgtctctttctgctgattcccgttgagcact	CRISPR spacer
tcctgattcaggcaggacagcgtctctttctgctgattcccgttgagcact	Protospacer
***************************************************

2. spacer 1.3|51326|52|CP028350|PILER-CR matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 0, identity: 1.0

tttgccgactggcatcgtcagagctccggcgtactgcggattcccctgtcgg	CRISPR spacer
tttgccgactggcatcgtcagagctccggcgtactgcggattcccctgtcgg	Protospacer
****************************************************

3. spacer 1.3|51326|52|CP028350|PILER-CR matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttgccgactggcatcgtcagagctccggcgtactgcggattcccctgtcgg	CRISPR spacer
tttgccgactggcatcgtcagagctccggcgtactgcggattcccctgtcgg	Protospacer
****************************************************

4. spacer 1.1|51157|51|CP028350|PILER-CR matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 1, identity: 0.98

tcctgattcaggcaggacagcgtctctttctgctgattcccgttgagcact	CRISPR spacer
tcctgattcaggcaggacagcgtctctttctgctgattaccgttgagcact	Protospacer
************************************** ************

5. spacer 1.1|51157|51|CP028350|PILER-CR matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.941

tcctgattcaggcaggacagcgtctctttctgctgattcccgttgagcact	CRISPR spacer
ttctgattcaggcaggacagcgcctttttctgctgattcccgttgagcact	Protospacer
*.********************.**.*************************

6. spacer 1.2|51227|80|CP028350|PILER-CR matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 20, identity: 0.75

actgcattcacgttcaacacggccggcgtgcgtactgtattgaggcgctttaacttatca	CRISPR spacer
actgcattcacgttcaacacggccggcgtgcgtactgtattgaggcgctttaacttatca	Protospacer
************************************************************

7. spacer 1.2|51227|80|CP028350|PILER-CR matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 22, identity: 0.725

actgcattcacgttcaacacggccggcgtgcgtactgtattgaggcgctttaacttatca	CRISPR spacer
actgccttcacgttcaacacggccggcgtgcgtcctgtattgaggcgctttaacttatca	Protospacer
***** *************************** **************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP028349_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028349_1

194884-195031

Orphan

Consensus_repeat	Method
TAGTACGTGAGGATGGCGAGCACTGCCCAACCGGAGCCTGGCAAGTAAGCCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028349_1

>merge|CP028349|1|194884-195031|CRISPRCasFinder
TAGTACGTGAGGATGGCGAGCACTGCCCAACCGGAGCCTGGCAAGTAAGCCAGGCCCATGCACACCAAAGTGCACAGCCACCGGAGCGTACTCCTAGTACGTGAGGATGGCGAGCACTGCCCAACCGGAACCTGGCAAGTAAGCCAGG

>CP028349|1|1|194884-195031|CRISPRCasFinder
TAGTACGTGAGGATGGCGAGCACTGCCCAACCGGAGCCTGGCAAGTAAGCCAGG	CCCATGCACACCAAAGTGCACAGCCACCGGAGCGTACTCC
TAGTACGTGAGGATGGCGAGCACTGCCCAACCGGAACCTGGCAAGTAAGCCAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP028349.1\|AVV35872.1\|190367_191441_-\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
CP028349.1\|AVV35878.1\|195756_196524_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183080
CP028349.1\|AVV35874.1\|192284_193172_-\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	unknown	unknown	gnl\|CDD\|182550
CP028349.1\|AVV35883.1\|200813_201671_-\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
CP028349.1\|AVV35882.1\|200357_200753_+\|aspartate-1-decarboxylase-autocleavage-activator-PanM	unknown	unknown	gnl\|CDD\|380212
CP028349.1\|AVV35885.1\|202889_203558_-\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|182829
CP028349.1\|AVV35879.1\|196520_197792_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
CP028349.1\|AVV35875.1\|193225_194542_-\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
CP028349.1\|AVV35868.1\|186572_187067_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182263
CP028349.1\|AVV35867.1\|185529_186225_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
CP028349.1\|AVV35871.1\|189627_190371_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236524
CP028349.1\|AVV35870.1\|189343_189631_+\|DUF2756-domain-containing-protein	unknown	unknown	gnl\|CDD\|372724
CP028349.1\|AVV35873.1\|191442_192288_-\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	unknown	unknown	gnl\|CDD\|182875
CP028349.1\|AVV35877.1\|195041_195755_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	unknown	unknown	gnl\|CDD\|183231
CP028349.1\|AVV39181.1\|203563_205258_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
CP028349.1\|AVV35881.1\|198849_199962_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|237959
CP028349.1\|AVV35869.1\|187383_189135_-\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|181992
CP028349.1\|AVV35866.1\|184431_185427_-\|HTH-type-transcriptional-regulator-GntR	unknown	unknown	gnl\|CDD\|184949
CP028349.1\|AVV35884.1\|201910_202900_-\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|182910
CP028349.1\|AVV35880.1\|197788_198715_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689

Protein	Function_ID	Function_description	E-value
CP028349.1\|AVV35872.1\|190367_191441_-\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
CP028349.1\|AVV35878.1\|195756_196524_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	0
CP028349.1\|AVV35874.1\|192284_193172_-\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	gnl\|CDD\|182550	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA.	9.01636e-174
CP028349.1\|AVV35883.1\|200813_201671_-\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
CP028349.1\|AVV35882.1\|200357_200753_+\|aspartate-1-decarboxylase-autocleavage-activator-PanM	gnl\|CDD\|380212	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM. Members of this family, called PanM (or PanZ), although related to the GNAT family N-acetyltransferases, have a different function. Then enzyme PanD, aspartate 1-decarboxylase, has an active site modified Ser residue, created by cleavage of a precursor form. PanM promotes the maturation of the CoA biosynthesis enzyme PanD, but also inhibits its activity in the presence of CoA. Figure 6 in PMID:26276430 identifies residues considered critical to interaction with PanD; seed alignment sequences and cutoff scores were chosen to separate proposed PanM from functionally distinct relatives.	1.61605e-72
CP028349.1\|AVV35885.1\|202889_203558_-\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|182829	PRK10908, PRK10908, cell division ATP-binding protein FtsE.	4.91731e-165
CP028349.1\|AVV35879.1\|196520_197792_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	0
CP028349.1\|AVV35875.1\|193225_194542_-\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
CP028349.1\|AVV35868.1\|186572_187067_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182263	PRK10140, PRK10140, N-acetyltransferase.	1.30479e-69
CP028349.1\|AVV35867.1\|185529_186225_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.96524e-79
CP028349.1\|AVV35871.1\|189627_190371_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236524	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional.	1.34411e-162
CP028349.1\|AVV35870.1\|189343_189631_+\|DUF2756-domain-containing-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	0.000215696
CP028349.1\|AVV35873.1\|191442_192288_-\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	gnl\|CDD\|182875	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE.	0
CP028349.1\|AVV35877.1\|195041_195755_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	gnl\|CDD\|183231	PRK11614, livF, high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF.	4.21714e-164
CP028349.1\|AVV39181.1\|203563_205258_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
CP028349.1\|AVV35881.1\|198849_199962_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
CP028349.1\|AVV35869.1\|187383_189135_-\|gamma-glutamyltransferase	gnl\|CDD\|181992	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.	0
CP028349.1\|AVV35866.1\|184431_185427_-\|HTH-type-transcriptional-regulator-GntR	gnl\|CDD\|184949	PRK14987, PRK14987, HTH-type transcriptional regulator GntR.	0
CP028349.1\|AVV35884.1\|201910_202900_-\|cell-division-protein-FtsX	gnl\|CDD\|182910	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional.	0
CP028349.1\|AVV35880.1\|197788_198715_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	0

>CP028349.1|AVV35875.1|193225_194542_-|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MSVVTFRRSLMSVLLGLTLSSHAMAATEIPFWHSMEGELGKEVDSLAQRFNETHPDYKIVPTYKGNYEQSLAAGIAAVRSGKAPAVLQVYEVGTATMMASKAIVPVHQVFKDAGIPFDEKQFVPTVAGYYSDSKGQLISQPFNSSTPVLYYNKDAFKKAGLNPDQPPKTWQELATDAAALRKAGMSCGYASGWQGWIQIENFSAWHALPVATENNGFDGLDAVLEFNKPVQVRHIDLLEAMNKKGDFTYFGRKDESTAKFYNGDCGITTASSGSLADIRHYAKFNFGVGMMPYDDTVPNAPQNALIGGASLWVMKGKDAATYKGVAEFMQFLAKPEIAAEWHQKTGYLPITTAAYELTKQQGFYDKNPGADIATRQMMNKPPLPFTKGMRLGNMPQIRTVIDEELESVWTGKQSPQSALDNAVKRGNELLRRFQQQMK
>CP028349.1|AVV35874.1|192284_193172_-|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA
MSSSRPVFRTSLLPYLLVLPQLLITAIFFLWPAGEALWYSLQSLDPFGISSSFVGLENFRRLFADPYYLDSFWTTIKFSGMVTVFGMVFSLLLAALVDYVVRLRRLYQTLLLLPYAVAPVVAAVLWMFLFNPGLGLFSYLLNHIGYNWNYAQNSGQAMFLIVLASIWQQMSYNFLFFFAALQSIPKSLVEAAAIDGAGPVRRFFNLSLPLITPVSFFLLVVNLIYAFFDTFPVIDAATGGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMLLVIGLTVLQFRFVERKVQYQ
>CP028349.1|AVV35873.1|191442_192288_-|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE
MIENRRGLDLFSHIVLVLGVLTILFPLYVAFVAATLDNEAVYQVPMTLVPGTHLWENISRIWTHGVNGSGPAFGLMLLNSMIMALGITFGKITVSMLSAFALVWFRFPLRTLFFWLIFITLMLPVEVRIFPTVQVIADLNLLDSYSGLTLPLMASATATFLFRQFFMSLPDELVEAARIDGAGAMRFFIDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIVNDASLGTAVAGIKSMISSSGSPTQWNEVMAAMLLTLIPPLAVVLVMQRAFVRGLVESEK
>CP028349.1|AVV35872.1|190367_191441_-|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC
MAGVTLQAVTKSYDGKNQIIQPLNVTINDGEFMVMVGPSGCGKSTLLRMVAGLERVTSGDIYIDNRRVTQEEPKDRGIAMVFQNYALYPHMSVEENMAYGLKIRGMGKEQIRQRVLDAARSLELDHLLMRRPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDARLRVQMRLELQQLHRRLQTTSLYVTHDQVEAMTLAQRVMVMNKGVVEQIGTPVDVYERPASQFVASFIGAPAMNLLKGQISSDGSRFNLDASHALPLSDSKPKWANQPVVLGIRPEHIRQSSREQGGVPLRVDTLEMLGADNLAHGRIGDTPLVVRLAHSERPQPGSTLWLHLPSDALHFFDSTHGKRLE
>CP028349.1|AVV35871.1|189627_190371_-|glycerophosphodiester-phosphodiesterase
MSTQHWPYPRIVAHRGGGKLAPENTLAAIDVGAKYGHQMIEFDAKLSMDAQIFLLHDDTLDRTSNGWGVAGQLPWEKLSQLDAGSWFGNAFTGEKLARLDEVAARCRQHQMMANIEIKPTTGSDAETGRAVAQAAAILWQDQAAPLLSSFSFEALEAAMQVEPQLPRGLLSHSWDPEWQEKTSALACVSIHLNHKVLTAERVTELKAGGLKILVYTVNSPDRARELLKWGVDAICTDSIDIIGPDFH
>CP028349.1|AVV35870.1|189343_189631_+|DUF2756-domain-containing-protein
MKKWMIVLAALLPFASQANTLNSTNDPNKPGYNPSQQRMQSQMQSQQQQQQLKLRQDQQRQTQDMQRKMQEQRNSAQQRVITTQPGQQNQNPNQN
>CP028349.1|AVV35869.1|187383_189135_-|gamma-glutamyltransferase
MKMQQTVRQLSWSLVMSFTVVAGANAAPTQVPPVSYGVDSDTFHPVKAQHGMVASVDALATQVGVEILRQGGNAVDAAVAVGFALAVTHPQAGNLGGGGFMLLRTASGRATAIDFREMAPGHASRDMFLDKQGNADSKLSLTSHLASGTPGTVAGLALAAQKYGTLPLSTLLAPAIRLARDGIPVNDALADDLKTYGKEVLITHPNSKAIFYKPDGTPWQKGDRLVQKNLAHSLQLIARQGPDAFYKGEIADEIAGEMAQHGGLISKADLAAYRAVERQPISGTYRGYEVFSMPPPSSGGIHIVQILNILENFDLAKMGFGSADAMQVMAEAEKYAYADRSEYLGDPDFVKVPWQALTSKAYAKTLAQQIDVAKARPSSEIKPGKLEPYESNQTTHFSVVDKQGNAVAVTYTLNTYFGSGIVAGKSGILMNNEMDDFSAKPGTPNVYGLVGGEANAVQPAKRPLSSMSPTIVAKGGKTWLVTGSPGGSRIITTVLQMVVNSIDFGMNVAEATNAPRFHHQWLPDQLRVEKGFSPDTLRLLEAKGQHVKVLPSMGSTQSIMIGPDGMLYGASDPRSIDDLSAGY
>CP028349.1|AVV35868.1|186572_187067_+|GNAT-family-N-acetyltransferase
MSEIVVRHVMPEDAAALHRIYSQPDTQASTLHLPYSSLQMWQSRLATPQPHSHLLVACIDEEVVGQCALDAVARPRRRHVASLGMGVDERYRQRGVGTALMREMVSLCDNWLQVSRMELTVFVDNGPAIALYQRFGFEIEGTAKGFAIRHGELIDAHYMARVKA
>CP028349.1|AVV35867.1|185529_186225_-|pirin-family-protein
MIYVRKAEERGHANHGWLDSWHTFSFASYHDANFMGFSALRVINEDVIDGGQGFGTHPHKDMEILTYVLSGTVEHQDSMGNKEQIPAGEFQIMSAGTGVRHSEYNASESEPLHLYQIWIIPERTGIEPRYDQRRFPDVQGRQLVLSPDAREGSLKVYQDMTLSRWVLAAGEQDNVAIDAGRRIWIQVVKGDVTVNGNAVTTSDALAIWDESALTIEASSAAEVLLFDLPPV
>CP028349.1|AVV35866.1|184431_185427_-|HTH-type-transcriptional-regulator-GntR
MKKKRPVLQDVADRVGITKMTVSRYLRNPEQVSVALRDKIAVALDELGYIPNRAPDMLSNATSRAIGVLLPSLTNQVFADVLRGIEAVTDEANYQTLVAHFGYNPQKEELQLRSLLGWNIDGVILTERTHTPGTLRMLEVAGIPVIEVMDSVTPCLDMAVGFDNVEAARQMTQAILSKGHRHTVYLGARLDERTLQKQRGYEIAMREAGLTPHSVMMEDASSFSAGGDLLREAQRLYPETDSLFCTNDDLAVGAMFECQRQGLQVPTQMAIAGFHGHDISQVVTPQLATVLTPRDRMGREAAAMLLARIAGESSDDPLRDIGFEISEGGSI
>CP028349.1|AVV35877.1|195041_195755_-|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF
MANAMLTIENVSAHYGKIQALHNVSLYINQGEIVTLIGANGAGKTTLLGTLCGEPRATQGTITFDGKAITDWQTARIMREAIAIVPEGRRVFSRMTVEENLAMGGFFASRPEYLTRIKRVYELFPRLEERKIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRSEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDSGAALLSNEAVRSAYLGA
>CP028349.1|AVV35878.1|195756_196524_-|ABC-transporter-ATP-binding-protein
MIQPLLAVEGLMMRFGGLLAVNNVALELRPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIKLREQHLEGLPGQKIARMGIVRTFQHVRLFREMTVIENLLVAQHQHLKSGVFSGLLKTPAFRRSESEALDRAATWLERVGLLDLANRQAGNLAYGQQRRLEIARCMVTRPEILMLDEPAAGLNPKETHELDALIAELRGEHKVSVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPDVIRAYLGEA
>CP028349.1|AVV35879.1|196520_197792_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MKTSFINALISSLMLLVLATFFMGLRLNLDGTNLVVQNAGSVRWDWIAAGCAVVFLFQLLRPIWQSGLKKISGPALVLPGLDGSTPKQKLVMAVLIIAAVAWPFLVSRGTVDIATMTLIYVMLGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWQCLPLSGMVAALFGLLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTALTGGPNGISQIPKPTLFGLEFGRTPREGGWDTFHNFFGLKYDPSDRIIFLYLVALLLVVLTLFVINRLLRMPLGRAWEALREDEIACRSLGLSPTRIKLTAFTISAAFAGFAGSLFAARQGFVSPESFTFVESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDLNEYSMLVLGGLMVLMMIWRPQGLLPMKRPHLKLRAAKKGEQA
>CP028349.1|AVV35880.1|197788_198715_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH
MSEQFLYFIQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFIVIAALMMMGIDTTWLMIAAGFVMAVIISSAYGWSIERVAYRPVRSSKRLIALISAIGMSIFLQNYVSLTQGSRDLALPSLITGQWTVGESNGFAATISTMQIVIWVVTFLAMLALTTFIRYSRMGRACRACAEDLKMASLLGINTDRVISLTFVIGAAMAAVAGVLLGQFYGSINPFIGFMAGMKAFTAAVLGGIGSIPGAMIGGLVLGIAEALTSAYLSTEYKDVVSFALLIVVLLVMPTGILGRPEVEKV
>CP028349.1|AVV35881.1|198849_199962_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MKMKGRALLAGCVALAMSHAALAEDIKVAIVGAMSGPVAQYGDMQFAGATQAIEDINAKGGVNGNKLVAVKYDDACDPKQAVAVANKVINDGIRYVIGHLCSSSTQPASDIYEDEGVLMITPAATAPDLTSRGYKLIMRTTGLDSDQGPTAAKYVMTELKPQRIAVVHDKQQYGEGLARSVQESLKKQGANIVMFEGITAGDKDFSTLVARFKKENVDFVYFGGYYPEMGQIVRQARAAGLKTQFMGPEGVGNASLSNIAGAASEGMLVTLPKRYDQVETNKPIVDALKAKKLDPTGPFVWTTYAALQSLATGMERSKSAEPDAIVKNLKEGAAVPTVMGNLNWDEKGDLKGFEFGVFKWHADGTSTAVK
>CP028349.1|AVV35882.1|200357_200753_+|aspartate-1-decarboxylase-autocleavage-activator-PanM
MKLTIQRLTALTPQDRIDLGKVWPDLEMEKLEQGLSESHRLYAARFNDRLLAGLQLEISGIHGKVHRLAVRDVTRRRGVGQYLLEETIRQNGSIADWWIADDGSDDQQVRAAFMQACGFRAQSDGWIRAAD
>CP028349.1|AVV35883.1|200813_201671_-|RNA-polymerase-sigma-factor-RpoH
MTKEMQTLAIAPLGNLESYVRAANTWPMLSAEEEKALAERLHYQGDLEAAKTLILSHLRFVVHIARNYSGYGLPQADLVQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVSSKDVREMESRMAAQDMTFDMSADDESSEGRSMAPVLYLQDKTSDFADGIEEDNWDAHAADKLSYAMEGLDERSQHIIRARWLDEDNKTTLQELADQYGVSAERVRQLEKNAMKKLRMAIEA
>CP028349.1|AVV35884.1|201910_202900_-|cell-division-protein-FtsX
MVNKRIKRPAAPKAKQPSKSKSKALKGGWQEQWRYALRGTLSDMWRQPLATLLTVMVIAISLTLPSVCYMVWKNVSQAATQWYPAPQLTVYLSKTLDDTAAENVVAQLKQVEGVDNVNYLTREEALNEFRNWSGFGGAMDMLEQNPLPAVAIITPKLNFQNSDTMQSLRDRVSKVQGVDEVRMDDSWFARLAALTGLVGQIASMIGVLMIVAVFLVIGNSVRLSIFARRDTINVQKLIGATDGFILRPFLYGGALLGFSGAVLSLLLSEVLVLRLQSVVASVATVFGTTFSLEGFSWDEALLLLLIAAIIGWVAAWLATVQHLRRFTPQ
>CP028349.1|AVV35885.1|202889_203558_-|cell-division-ATP-binding-protein-FtsE
MIRFEEVSKAYLGGRQALQGVDFHLRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDISRLRNSEVPFLRRQIGMIFQDHHLLMDRSVYDNVAIPLIISGASGEDIRRRVSAALDKVGLLDKAKSYPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEDILRLFEEFNRVGVTVLMATHDSGLIARRNYRMMTLNQGRLHGGHDGQ
>CP028349.1|AVV39181.1|203563_205258_-|signal-recognition-particle-docking-protein-FtsY
MAKEKKRGFFSWLGFGKEEEKQPAAEEQTPEIAQPEQQQTEQEAPALSQAEAQAEETVAITETVAGQQREAEVTAAAPHESAPAVLDEVEPIEADPEALLEVAAPEHDATPVIDADDVVTPIADAEPADAPLSEEELTALALGDAEIVDIPHSETEAPLSEEELTALALGDAEIVEPPHSEAPLNNEVLTPQVLDDAAVADTQDSEADAPLTEEELTALALGDADVTDQEPTESLSDTVSDLPLAAAPLIVQEQERPSKEGFFSRLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTTRRIITNLTQQANRKQLRDAEALYGLLKAEMASILAKVDAPLDVSGKTPFVILMVGVNGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTGQNAVSQARLFNEAVGLTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDFIEALFARED

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028349_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028349_3

2935887-2935999

Orphan

Consensus_repeat	Method
GTTCGCTGCGCGAACGGGCTCTGAGAGGGGTTTCGTTCGCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028349_3

>merge|CP028349|3|2935887-2935999|CRISPRCasFinder
GTTCGCTGCGCGAACGGGCTCTGAGAGGGGTTTCGTTCGCCTGGCAGATGCATGCGCTAAAGTTGGGGGTGTTCGCTGCGCGAACGGGCGCTGAGAGGGGTTTCGTTCGCCTG

>CP028349|3|2|2935887-2935999|CRISPRCasFinder
GTTCGCTGCGCGAACGGGCTCTGAGAGGGGTTTCGTTCGCCTG	GCAGATGCATGCGCTAAAGTTGGGGGT
GTTCGCTGCGCGAACGGGCGCTGAGAGGGGTTTCGTTCGCCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP028349.1\|AVV38225.1\|2925116_2925920_-\|phosphate-starvation-inducible-protein-PhoH	unknown	unknown	gnl\|CDD\|182529
CP028349.1\|AVV38236.1\|2941983_2942487_-\|flagella-biosynthesis-regulatory-protein-FliZ	unknown	unknown	gnl\|CDD\|183213
CP028349.1\|AVV38233.1\|2939211_2939880_-\|cystine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185055
CP028349.1\|AVV38224.1\|2924022_2924556_+\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|376578
CP028349.1\|AVV38234.1\|2939879_2940680_-\|cystine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|183061
CP028349.1\|AVV38226.1\|2926475_2927753_-\|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl\|CDD\|273606
CP028349.1\|AVV38231.1\|2936922_2937999_-\|acyltransferase	unknown	unknown	gnl\|CDD\|227104
CP028349.1\|AVV38223.1\|2922027_2923086_+\|two-component-system-sensor-histidine-kinase-BasS	unknown	unknown	gnl\|CDD\|236751
CP028349.1\|AVV38237.1\|2942537_2943260_-\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
CP028349.1\|AVV38232.1\|2938462_2939215_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	unknown	unknown	gnl\|CDD\|183063
CP028349.1\|AVV38228.1\|2928923_2929748_-\|FTR1-family-protein	unknown	unknown	gnl\|CDD\|272930
CP028349.1\|AVV38240.1\|2945315_2946602_-\|flagellin-FliC	unknown	unknown	gnl\|CDD\|235867
CP028349.1\|AVV38235.1\|2940793_2941780_-\|D-cysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|179673
CP028349.1\|AVV38239.1\|2944642_2944909_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133474
CP028349.1\|AVV38227.1\|2927755_2928868_-\|iron-uptake-system-protein-EfeO	unknown	unknown	gnl\|CDD\|236677
CP028349.1\|AVV38222.1\|2921350_2922031_+\|two-component-system-response-regulator-BasR	unknown	unknown	gnl\|CDD\|182612
CP028349.1\|AVV38230.1\|2931876_2935824_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
CP028349.1\|AVV38229.1\|2929940_2931425_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|185317
CP028349.1\|AVV39307.1\|2923408_2923963_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
CP028349.1\|AVV38238.1\|2943402_2944371_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379157

Protein	Function_ID	Function_description	E-value
CP028349.1\|AVV38225.1\|2925116_2925920_-\|phosphate-starvation-inducible-protein-PhoH	gnl\|CDD\|182529	PRK10536, PRK10536, phosphate starvation-inducible protein PhoH.	0
CP028349.1\|AVV38236.1\|2941983_2942487_-\|flagella-biosynthesis-regulatory-protein-FliZ	gnl\|CDD\|183213	PRK11582, PRK11582, flagella biosynthesis regulatory protein FliZ.	7.51903e-119
CP028349.1\|AVV38233.1\|2939211_2939880_-\|cystine-ABC-transporter-permease	gnl\|CDD\|185055	PRK15100, PRK15100, cystine ABC transporter permease.	9.72685e-149
CP028349.1\|AVV38224.1\|2924022_2924556_+\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	1.04504e-86
CP028349.1\|AVV38234.1\|2939879_2940680_-\|cystine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|183061	PRK11260, PRK11260, cystine ABC transporter substrate-binding protein.	0
CP028349.1\|AVV38226.1\|2926475_2927753_-\|deferrochelatase/peroxidase-EfeB	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	0
CP028349.1\|AVV38231.1\|2936922_2937999_-\|acyltransferase	gnl\|CDD\|227104	COG4763, COG4763, Predicted membrane protein [Function unknown].	2.94008e-23
CP028349.1\|AVV38223.1\|2922027_2923086_+\|two-component-system-sensor-histidine-kinase-BasS	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
CP028349.1\|AVV38237.1\|2942537_2943260_-\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	5.38e-131
CP028349.1\|AVV38232.1\|2938462_2939215_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	gnl\|CDD\|183063	PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional.	2.08934e-169
CP028349.1\|AVV38228.1\|2928923_2929748_-\|FTR1-family-protein	gnl\|CDD\|272930	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species. [Unknown function, General].	2.43552e-85
CP028349.1\|AVV38240.1\|2945315_2946602_-\|flagellin-FliC	gnl\|CDD\|235867	PRK06819, PRK06819, FliC/FljB family flagellin.	2.81076e-135
CP028349.1\|AVV38235.1\|2940793_2941780_-\|D-cysteine-desulfhydrase	gnl\|CDD\|179673	PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.	0
CP028349.1\|AVV38239.1\|2944642_2944909_-\|hypothetical-protein	gnl\|CDD\|133474	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.	0.00155285
CP028349.1\|AVV38227.1\|2927755_2928868_-\|iron-uptake-system-protein-EfeO	gnl\|CDD\|236677	PRK10378, PRK10378, inactive ferrous ion transporter periplasmic protein EfeO; Provisional.	0
CP028349.1\|AVV38222.1\|2921350_2922031_+\|two-component-system-response-regulator-BasR	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	4.41897e-133
CP028349.1\|AVV38230.1\|2931876_2935824_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
CP028349.1\|AVV38229.1\|2929940_2931425_-\|sodium/proline-symporter-PutP	gnl\|CDD\|185317	PRK15419, PRK15419, sodium/proline symporter PutP.	0
CP028349.1\|AVV39307.1\|2923408_2923963_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	6.17057e-27
CP028349.1\|AVV38238.1\|2943402_2944371_-\|HNH-endonuclease	gnl\|CDD\|379157	pfam13391, HNH_2, HNH endonuclease.	1.78652e-06

>CP028349.1|AVV38230.1|2931876_2935824_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MATTTMGVKLDDATRERIKLAAQRIDRTPHWLIKQAIFNYLGQLDSGDAVPEIPLSAQVAAESEDTQPEETHQPFLDFAEQILPQSVTRSAVTAAWRRPETDAVPMMLEQARLPAALAEKTHQLAYQLADKLRHQKGATGRAGMVQSLLQEFSLSSHEGVALMCLAEALLRIPDKPTRDALIRDKISNGNWQSHLGRSPSLFVNAATWGLLFTGRLVSTHNEANLSSSLNRIIGKGGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAGDAKAYLLSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYERVMEELYPILKSLTLLARSYDIGINIDAEEADRLELSLDMLEKLCFEPELEGWNGIGFVIQAYMKRCPFVIDELIDLAQRSRRRLMIRLVKGAYWDSEIKRAQMEGLEGYPVYTRKVYTDISYLACARKLLSVPSLIYPQFATHNAHTLAAIYQLAGNNYYPGQYEFQCLHGMGEPLYEQVVGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPIDELVADPVTAVEKLGISEGAIGLPHPKIPLPRELYGENRVNSAGLDMANEHRLASLSSALLSSAAQPCLAEPMIDGEAGAGELRDILNPAAPNDRVGQVREATEQEVSVALDAAVNSGPIWFATPPQERAAILERAAQIMEGQMQQLLGILVREAGKTYNNAIAEVREAVDFLYYYAGMVRDDFDNETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVQILLDAGVPPGVLQLLPGQGETVGAQLTGDNRVRGVMFTGSTAVATLLQRNLAGRLDQHGRPVPLIAETGGMNAMIVDSSALTEQVVIDIVASAFDSAGQRCSALRLLCIQEDVADHTLKMLRGAMAECRMGNPERFSTDIGPVIDAEAKANIDRHIQAMRNKGFTVYQAVQDNPQDSKEWTSGTFVKPTLIELNQVSDLDKEIFGPVLHVVRFTRNNLPKLVEQINASGYGLTLGVHTRIDETIAQVTANARVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLASRPDGALRLTFDRQDAERPADSTLRQSLLAPHQALSNWAKDKPELAQLCQHYGELAQAGVVRLLPGPTGERNTFSLLPRDLVLCLADNEQDALIQLAAVTSVGSKALWQDDELHRALRASLPDAVKARITLARDPLAAEFDAVIYHGDADQLRTLCEQIAARDGAIVSVQGFARGETNLLLERLLIERSLSVNTAAAGGNASLMTIG
>CP028349.1|AVV38229.1|2929940_2931425_-|sodium/proline-symporter-PutP
MSVSTPMLVTFVVYILGMVLIGFAAYRSTKNFDDYILGGRSLGSVVTALSAGASDMSGWLLMGLPGAIFISGISESWIAIGLTIGAWLNWKIVAGRLRVQTEHHNNALTLPDFFTSRFEDHSKILRVISAIVILVFFTIYCASGVVAGARLFESTFGMDYQTALWAGAAATILYTLVGGFLAVSWTDTVQASLMIFALILTPVFVIIAVGGWSDSLTVIEAKSLENLDMLKGLNFVAVISLLGWGLGYFGQPHILARFMAADSHRSIRTARRIGMAWMVLCLAGAVAVGFFGIAYFQNNPTLATGVNDNAERVFIELARILFNPWIAGILLSAILAAVMSTLSCQLLVCSSALTEDLYKGFLRKNASQKELVWVGRLMVLLVALIAIALASNPENRVLGLVSYAWAGFGAAFGPVVLFGVCWKRMNRNGALAGMIIGALTVLVWKQYGWLGLYEIIPGFIFASIAIVVFSLMGREPSAEAQQRFAAAEAEFQTK
>CP028349.1|AVV38228.1|2928923_2929748_-|FTR1-family-protein
MFVPFLIMLREGLEAALIVSLIASYLKRTQRTQWFPAMWAGVFIAAALCLGLGLFINATTGEFPQKEQELFEGIVAVIAVVILTSMVFWMRKVARNIRVELEQAVDQALQRSGRGGLALVLMVFLAVAREGLESVFFLLAAFTQDVGYAPPIGAVLGLATAVVLGMLLYWGGIRLNMAHFFRWTSVFILFVAAGLAAGAIRAFHEAGLWNRFQDVAFDLSNTLSTHSLFGTLLEGILGYQETPSVSEVTIYFVYLIPALILFFMPARPAASATV
>CP028349.1|AVV38227.1|2927755_2928868_-|iron-uptake-system-protein-EfeO
MTMRFRRKALLLPLLAISASATAAVPQVTVSVNDRQCEPMSLTVKAGKTQFLIKNNSQKALEWEILKGVLVVEERENIAPGFSQKLTANLEAGEYEMTCGLLSNPKGKLIVKGEGAATNSTSARMQLEGPITEYKAYVTEQVNQLVSSTQAFTDAVKAGDVEKAKALFAPTRQYYERIEPIAELFSDLDGSIDAREDDYEKKSADPKFTGFHRLEKALFADNSTKDMADYADKLNKDVKDLQVRISELAFPPAKVVGGAAGLIEEVASSKISGEEDRYSRTDLWDFQANIDGAQKIVELLRPLVSKANPQLLAKVDANFKKVDAILSKYRTQTGFESYEKLTSADRNALKGPITALAEDLSLLRGTLGLD
>CP028349.1|AVV38226.1|2926475_2927753_-|deferrochelatase/peroxidase-EfeB
MSRKEDDAQPARRRLLKGLGLLGGAAAIGGGCPFHTAAADSFSPGTVTPQARQQTQPFYGQHQAGITTPQQASMMLVAFDLLSNDKAELKRLFQLLTQRIAFLTAGGPAPAVTNPQLPPMDSGILGATIAPDNLTITVSVGHSLFDERFDLAPHKPKKLQPMTRFPNDSLDASQCHGDLLLQLCANTQDTVIHALRDIIKHTPDLLGVRWRREGFISDHAARSQGQETPINLLGFKDGTANPDTRNSALMNQLLWVTADQEEPVWARNGSYQAVRLIRFHVEMWDRTPLGEQQTIFGREKLSGAPLGMKHERDVPDYARDPDGDVIALDAHIRLANPRTPETASSLMLRRGYSYSAGISASGQLEMGLLFVCYQHDLERGFLTVQQRLNGEALEEYIRPFGGGYFFALPGVPDASHYLAQPLLES
>CP028349.1|AVV38225.1|2925116_2925920_-|phosphate-starvation-inducible-protein-PhoH
MKGATMGRQKAVIKARREARRVLRNDSRSHRQREEESVTSLVHMSGLDAIGMARDTRDRLPIEARNEAQAHYLNAIGTKQLIFATGEAGCGKTWISAAKAAEALINKDIDRIIVTRPVLQADEDLGFLPGDISEKFAPYFRPVYDILVKRLGASFMQYCLRPEIAKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPAGVPSGLADALARFEEDEMVGIVRFGKEDCVRSALCQRTLHAYS
>CP028349.1|AVV38224.1|2924022_2924556_+|peptide-methionine-(S)-S-oxide-reductase
MAIEYAVIAGGCFWCTEAVFKDVIGVESVESGYTGGARPNPTYEQVCSGATGHAEAIRIGFDPEQVTYGDLLDISFVTHDPTQLNRQGNDIGTQYRSAIFPANAEQEAEARAAIERAQTDHDVPVVTTIEPLKEWYPAEAYHQDYWEGAGQRNGYCMAVIPPKLQKLRKSFANRVKS
>CP028349.1|AVV39307.1|2923408_2923963_+|flavin-reductase-family-protein
MHKYAFPVSKARKYLEPGPVLLLSSQYQDQHDIMTLGWHTVLEFSPSLVGCMIAGMNHSHELIRNSGQCVLNIPSASLINEVVAVGNSHGDSIDKFEAFGLTPEPAQVVGAPMIAECFASFECQLYDDAMVARYNLFIFEIVKAHVAEQPEYPPTLHYTGEGRFSVMSDKMLDKSGDFKPEMLI
>CP028349.1|AVV38223.1|2922027_2923086_+|two-component-system-sensor-histidine-kinase-BasS
MIKRFDHRSMRFRLILTIGLILLVFQVISVVWLWHESKEQIQFLVEAQLQKRNMDSHVKREVHEAVASLAVPSLVMITLTLLLCYQAVKWITRPLYQLQRELESRSEENLDPVACHSQVHEIDAVTQAINQLVARLNSSLERERLFTADVAHELRTPLAGLRLHLELIERNSDVKVQPLVQRLDQMTHSVSQLLNLARAGQSFTSGTYQNVGLIEDVILPMEAELSIMLEAHQQTLVLDLPQEQFVRGDATLLKMLLRNLVENAHRYSPDNSTISVQLLSVPQPMMVVEDEGPGIDESKSGELSKAFIRMDSRYGGIGLGLSIVSRIVQLHRFQFFLENRRDRSGCRAIIKF
>CP028349.1|AVV38222.1|2921350_2922031_+|two-component-system-response-regulator-BasR
MKILIVEDDALLLQGLMLALEGEGYVCDGVTRVRDAEAHFASGLYSLVVLDLGLPDEDGLHFLIRLRRQKKMTPVLILTARDTISERIAGLDAGADDYLIKPFSLDELLARIRALIRRHVNQGDSHVRVGALALDMTHRQIMLNDVLLDLTPKEFAILSRLMLKAGNPVHREILYQDIYNWETEPSTNTLEVHIHNLRDKIGKSAIRTVRGFGYALVTQGGVREAI
>CP028349.1|AVV38231.1|2936922_2937999_-|acyltransferase
MSQTKSDQILWVDTLKGTCILLVVLYHTVLPGFEGTMKYLTAGWIPAEIWIQFNTVLSPLRMPAFFFVSGLLATNGILNRPWKQVFTSRITNLFYLYILWGFIQWWSIIGISTEITGQRISQNLNAAYAGSLFEFLKLTFMAMSTSWYLYGLGLYFLCAKIFRQYKLALVAVAILLNYLAVEKVIPFWGPQSLAQYFLFFLLGAFWSQTMLRLSEWRRENLMPWALLAAVAGIHVIFGLDKSLFLCVLAVLFSIAACRWLNQHFSMRYLNWVGRNTLQIYVIHRIFIEFFGMSVILFAQRHHLFEQAWFSFLWACFYPVAIVGLCSLCSVAIWSLTNRGVGQSLFVFPTLMKRVPGGG
>CP028349.1|AVV38232.1|2938462_2939215_-|L-cystine-ABC-transporter-ATP-binding-protein-YecC
MSAIEVRKLVKSFNGQKVLHDIDLNVAAGEVVAIIGPSGSGKTTLLRSINLLEVPDSGTIRVGEITVDAALAQSKQKEQVRRLRQQVGFVFQNFNLFPHRSVMENIIEGPVIVKGEAKADAVARARTLLEKVGLHGKEESYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLSTIRALAEEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGEAKALFSHPQQPRTRQFLDKFLSQ
>CP028349.1|AVV38233.1|2939211_2939880_-|cystine-ABC-transporter-permease
MQESLQLVLDSAPFLLKGALFTLQLSIGGMFFGLLLGFILALMRLSRFWPVRWLARIYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYASESLRGAIASIERGQWEAAASIGMTRWQTLRRVILPQAARTALPPLGNSFISLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNRLEQHVNRQDSESK
>CP028349.1|AVV38234.1|2939879_2940680_-|cystine-ABC-transporter-substrate-binding-protein
MSFSRAGRQMVMGVMAVALIAGVNVKTFAAENLLNKIKERGTLLVGLEGTYPPFSFQDEKGKLTGFEVEFAEQLAQHMGVKASLKPTKWDGMLASLDAKRIDVVINQVTISDERKKKYDFSTPYTVSGIQALTMKANAGTITKPADLAGKKVGVGLGTNYEQWLRENVKGVDIRTYDDDPTKYQDLRSGRLNAILVDRLAALDLVKKTGDTMAVAGDAFSRQESGVAVRKGNDDLLKAIDQAIADMQKDGSLSKLSQKWFGADVTK
>CP028349.1|AVV38235.1|2940793_2941780_-|D-cysteine-desulfhydrase
MSLHLLHQFPRLELLGAPTPLEHLPRLSDYLGRDIFIKRDDFTPVAMGGNKLRKLEFLAADALREGADVLLTAGAIQSNHVRQTAAVAARLGLKCVALLENPIGTHAENYLSNGNRLLLDLMNAEVIMVDALHNPTEQLAEEATRLEAQGFRPYIVPVGGSNALGALGYVECAQEIAHQSEGVVDFAAVVVASGSAGTHAGLAVGLEHLLPETELVGVTVSRQVEAQLPLVERLRQSLAETLEVQATAPLTLWDDYFAPRYGEPNDEGMAAVKLLAQLEGILLDPVYTGKAMAGLLDGISQNRFRREGPLLFIHTGGAPALFAYHPSV
>CP028349.1|AVV38236.1|2941983_2942487_-|flagella-biosynthesis-regulatory-protein-FliZ
MGAKTKARPLSRYLKDYKHSQSNCSHCGKVLDRMALVFRGQIINKEAIARMDQMIDEQLWLKLQPELTALCRFCSDIFCNTHPNYFDIMAFKQYLFEQTEMSPSTIREYVVRLRRLDEMLKAKNFPAEKLKGNSWHQCLESDLPDAGNNNYRIALRKYDQFLGWQQA
>CP028349.1|AVV38237.1|2942537_2943260_-|RNA-polymerase-sigma-factor-FliA
MNDFYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAGAMHRVEQSLGRSASEQEVAQQLNVSMEEYRQILLDTNNSQLFSYDEYREEHGDSAELVTEGHEEANPLHQLLEGSLRERVIEAIEALPDREKMVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRARLAGAR
>CP028349.1|AVV38238.1|2943402_2944371_-|HNH-endonuclease
MRFNYDLLPGEQLTFDEIARRYALQYPDDKELTARALLSPSTGLRTLKIRAVFAREESNSPLEDLLFISHDNERKNYLRRFEHYLKQNLSFLYFRRSDNEKRDNLWKVMGSSQVFAMIDPQSATAQNLLNSRGYKLVLMHQDDEDIYWQLFNPQADPCFPQSQRIQFIVVLSTPQHKVPAAVMPGTEVGRRVKARVLQRASQAEFSAGVKARYGACVMTGTELTERHNWPWVEACHIDTQEGDDGVLADNSIDNGLFLRSDLQRLFINRLISIDAESGTIQVHPGEEARQHIAPWYQELEGRVCSLWAAVPPATRQRLRARR
>CP028349.1|AVV38239.1|2944642_2944909_-|hypothetical-protein
MNIFIINLASSTGRRATTAHAYVINLEAATRLLKLLYPVWMVADKGGLFEEYGAIKPLAVHPVPVLLHNLAQQTSIQHFNNITQPHQR
>CP028349.1|AVV38240.1|2945315_2946602_-|flagellin-FliC
MAQVINTNSLSLITQNNINKNQSALSTSMERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISAAQTTEGALSEINNNLQRVRELTVQSQNGTNSDSDLTSIQDEIKSRLDEIDRVSGQTQFNGVNVLAQNGTMKIQVGANDGETISIDLKKIDSSTLGLSGFGVDKNTLKTSDAITQVGASGSLKDVDLSSVATALKVDASTLSLKNVQTSAGAATSTYVVSSGSDNYAVSVDDASGKVTLNTTDISYSDSDNGVTAGSMTGKYIKVGADSTGAAVGYVTVQGKDYKTAAGALTNTNDTTGSQNVASAIGDIASSTNTNVFTGSATADPLALLDKAIASVDTFRSSLGAVQNRLNSAVTNLNNTTTNLSSAQSRIQDADYATEVSNMSKAQIVQQAGNSVLSKANQVPQQVLSLLQG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028349_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028349_4

3673332-3673449

Orphan

Consensus_repeat	Method
GTTGGCCCGGTAACGGGCGCACCTCACGGATGAGGTGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028349_4

>merge|CP028349|4|3673332-3673449|CRISPRCasFinder
GTTGGCCCGGTAACGGGCGCACCTCACGGATGAGGTGCGTACTAAAAACGCCGGGAGCGTTTTTGAACAACGCAACGTGTTGGCCCGGTAACGGGCGCACCTCACGGATGAGGTGCGT

>CP028349|4|3|3673332-3673449|CRISPRCasFinder
GTTGGCCCGGTAACGGGCGCACCTCACGGATGAGGTGCGT	ACTAAAAACGCCGGGAGCGTTTTTGAACAACGCAACGT
GTTGGCCCGGTAACGGGCGCACCTCACGGATGAGGTGCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP028349.1\|AVV38838.1\|3681388_3684046_+\|protein-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
CP028349.1\|AVV38831.1\|3669699_3670113_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179603
CP028349.1\|AVV38830.1\|3669452_3669695_+\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|131249
CP028349.1\|AVV38840.1\|3685850_3687140_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|182433
CP028349.1\|AVV38837.1\|3680571_3681249_+\|DTW-domain-containing-protein	unknown	unknown	gnl\|CDD\|225690
CP028349.1\|AVV38839.1\|3684163_3685519_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|236510
CP028349.1\|AVV38835.1\|3678726_3679911_-\|tRNA/rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|236779
CP028349.1\|AVV38833.1\|3675155_3675686_+\|transcriptional-repressor-MprA	unknown	unknown	gnl\|CDD\|182795
CP028349.1\|AVV38836.1\|3680070_3680490_+\|thioredoxin-TrxC	unknown	unknown	gnl\|CDD\|182889
CP028349.1\|AVV39344.1\|3675836_3677009_+\|multidrug-export-protein-EmrA	unknown	unknown	gnl\|CDD\|185090
CP028349.1\|AVV39342.1\|3672229_3673189_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
CP028349.1\|AVV38828.1\|3668347_3668683_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182545
CP028349.1\|AVV38825.1\|3665371_3665791_-\|hypothetical-protein	unknown	unknown	unknown
CP028349.1\|AVV38826.1\|3665876_3666812_-\|homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|181899
CP028349.1\|AVV38834.1\|3677025_3678561_+\|multidrug-efflux-MFS-transporter-subunit-EmrB	unknown	unknown	gnl\|CDD\|129794
CP028349.1\|AVV38832.1\|3670082_3672221_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236179
CP028349.1\|AVV39343.1\|3673664_3674852_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
CP028349.1\|AVV38829.1\|3668837_3669155_+\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|182259
CP028349.1\|AVV38824.1\|3664825_3665371_+\|spermidine-N1-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
CP028349.1\|AVV38827.1\|3666801_3668211_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236904

Protein	Function_ID	Function_description	E-value
CP028349.1\|AVV38838.1\|3681388_3684046_+\|protein-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	0
CP028349.1\|AVV38831.1\|3669699_3670113_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	5.34462e-85
CP028349.1\|AVV38830.1\|3669452_3669695_+\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	3.9695e-35
CP028349.1\|AVV38840.1\|3685850_3687140_-\|MFS-transporter	gnl\|CDD\|182433	PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.	0
CP028349.1\|AVV38837.1\|3680571_3681249_+\|DTW-domain-containing-protein	gnl\|CDD\|225690	COG3148, COG3148, Uncharacterized conserved protein [Function unknown].	3.23501e-115
CP028349.1\|AVV38839.1\|3684163_3685519_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|236510	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase.	0
CP028349.1\|AVV38835.1\|3678726_3679911_-\|tRNA/rRNA-methyltransferase	gnl\|CDD\|236779	PRK10864, PRK10864, putative methyltransferase; Provisional.	0
CP028349.1\|AVV38833.1\|3675155_3675686_+\|transcriptional-repressor-MprA	gnl\|CDD\|182795	PRK10870, PRK10870, transcriptional repressor MprA; Provisional.	7.43324e-115
CP028349.1\|AVV38836.1\|3680070_3680490_+\|thioredoxin-TrxC	gnl\|CDD\|182889	PRK10996, PRK10996, thioredoxin 2; Provisional.	1.22302e-102
CP028349.1\|AVV39344.1\|3675836_3677009_+\|multidrug-export-protein-EmrA	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	0
CP028349.1\|AVV39342.1\|3672229_3673189_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
CP028349.1\|AVV38828.1\|3668347_3668683_-\|hypothetical-protein	gnl\|CDD\|182545	PRK10556, PRK10556, hypothetical protein; Provisional.	1.28147e-77
CP028349.1\|AVV38827.1\|3666801_3668211_-\|amino-acid-permease	gnl\|CDD\|236904	PRK11387, PRK11387, S-methylmethionine permease.	0
CP028349.1\|AVV38826.1\|3665876_3666812_-\|homocysteine-S-methyltransferase	gnl\|CDD\|181899	PRK09485, mmuM, homocysteine methyltransferase; Provisional.	0
CP028349.1\|AVV38832.1\|3670082_3672221_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
CP028349.1\|AVV38834.1\|3677025_3678561_+\|multidrug-efflux-MFS-transporter-subunit-EmrB	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	0
CP028349.1\|AVV38829.1\|3668837_3669155_+\|DUF883-domain-containing-protein	gnl\|CDD\|182259	PRK10132, PRK10132, hypothetical protein; Provisional.	1.73914e-36
CP028349.1\|AVV38824.1\|3664825_3665371_+\|spermidine-N1-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	6.86832e-132
CP028349.1\|AVV39343.1\|3673664_3674852_+\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.24713e-71

>CP028349.1|AVV39342.1|3672229_3673189_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MKLKQIQAINWNRIQDDKDLEVWNRLTSNFWLPEKVPLSNDLPGWQTLDKQQQQLTIRVFTGLTLLDTIQNVIGAPGLMEDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSEENAPLQNKARIILEHYRADDPLKKKIASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALASADDLRREELQQFAYDLLLALYENEVAYTEALYGDVGWVEEVKTFLHYNANKALMNLGYEALFPAELTDVNPAILSALSPNADENHDFFSGSGSSYVMGKAVETEDEDWNF
>CP028349.1|AVV38832.1|3670082_3672221_+|ribonucleotide-diphosphate-reductase-subunit-alpha
MATTDTLNGVTLDYHALNAMLNLYDADGRIQFDKDREATRQFYLQHVQPNTVSFASNAERLRYLVAESYYEADVLNQYDFDFLLALHEVAENWGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVALTLAQGDETLARALLEEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVWLNAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENKPMALFSPYDVERIYGQAFGDISISEKYDEMLADDRIRKTYIQPRDFFQTLAEIQFESGYPYIMYEDSVNRSNPIAGRINMSNLCSEILQVNSASEYNDDLSYRRVGKDISCNLGSLNIAHAMDSRDLARTVDVAVRALTSVSMMSEIGSVPSIAEGNRRSHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYCITYYALRTSNQLAQEHQQTFDGFADSDYASGVYFDKYLQRAWLPRTERVAQLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPIVSPIEIRKEGKTGRVYYPAPFMTNENLHLYQDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYIRLRQMALQGTEVQGCVSCSL
>CP028349.1|AVV38831.1|3669699_3670113_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MFPLVYFSSQSENTHRFVTRLSLPARRIPLDAREALHIDQPYILVVPSYGGGSSRGAVPRQVIQFLNDEANRRGIRGVIAAGNRNFGAGYCLAGSIIAKKCQVPCLYRFELMGTPDDIAKVKAGVTQFWQQQIPSTA
>CP028349.1|AVV38830.1|3669452_3669695_+|glutaredoxin-like-protein-NrdH
MRIIIYTKDNCVQCTATKNAMDRQGLAYQLINLDSQPDAIDNLKTLGYRQVPVVMADNDHWSGFRPDKIATLRQLAAVGG
>CP028349.1|AVV38829.1|3668837_3669155_+|DUF883-domain-containing-protein
MFNRTVKNDDIDINQDVNELADSLEALLKSYGSDAKDEVDSARSQAEKLLKQTRSKLNGGGNRVSQVARDAGAQVDTYVHDKPWHGVGVGAAFGIVVGILLASRR
>CP028349.1|AVV38828.1|3668347_3668683_-|hypothetical-protein
MYLRPDEVARVLEKAGFEVDEITPRAYGYRRGENYVYVNREARMGRMALVIHPTLKEKSQPFAEPASEMKTCDHYTQFPLYLAGDSQEHYGIPHGFSSRMALERYIQSVFG
>CP028349.1|AVV38827.1|3666801_3668211_-|amino-acid-permease
MSEQPTPSQEKFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVWLVMVCLGELSVAMPETGAFHVYAARYLSPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQIPVWIWCLVFCCAIYLLNVISTRFFAEGEFWFSLIKVVTIVAFIVLGGAAMFGFIPMKDGTPAPGLSNLTAHGWLPNGVLPILMTMVAVNFAFSGTELIGIAAGETQEPEKVLPLAIRTTVARLIIFFIGTVFVLAALIPMDQAGIVKSPFVLVFEKIGIPYAADIINFVILTAILSAANSGLYASGRMLWSLANENTLPRAFASVNKRGVPLLAITVSMIGGLLALVSSVVAPDTVFVALSAISGFAVVAVWLSICASHFVFRRRHLQQGKSLAELGYRAPLYPLTPVLGFLLCLLACLGLAFDPTQRIALWCGIPFVLFCYAAYHLTHKSSPKPEEAKDVA
>CP028349.1|AVV38826.1|3665876_3666812_-|homocysteine-S-methyltransferase
MSHNPVAQALTESPLLILDGALATELEARGCHLADALWSAKVLMENPELIYQVHYDYFVAGARCAITASYQATPQGFATRGLDEAQSLALIAQSVALARRARHDYLAVRPDAKTLLVAGSVGPYGAFLADGSEYRGDYALPEAEMMAFHRPRVQALLAAGADLLACETLPSFAEAQALVKLLAEFPESRAWFTFTLRDAGHISDGTPLSEVVSWLNQQPQVVAIGINCVALESVTPALHQLQRLTDKPLVVYPNSGEQYDADSKTWHSAPSGCTLHDKLDEWQQAGAKLIGGCCRTSPNDIAAIARACQPQ
>CP028349.1|AVV38825.1|3665371_3665791_-|hypothetical-protein
MKQRILALAAALLLSGCATIVGTETQMVRIDSLPQGARFTVQDERGYAVAQGFTPQTVELAKSTGRYFGKKHYLLMLESPGYVPVTVPIEARANLWYLLGNIPLGGFPGWLLVDPFYGGMYDLKPEHPRPFMNPVGARG
>CP028349.1|AVV38824.1|3664825_3665371_+|spermidine-N1-acetyltransferase
MTVKLRPLEREDLHFVHQLDNNASVMRYWFEEPYEAFVELSDLYNKHIHDQTERRFVVEHSGQKAGLVELVEINHVHRRAEFQIIIDPAHQGKGLATQAAKLAMDYGFSVLNLYKLYLIVDQENEKAIHIYTKLGFEIEGVLKHEFFINGEYRNTIRMCIFQHQYLERHKTPGGMVKPTAQ
>CP028349.1|AVV39343.1|3673664_3674852_+|MFS-transporter
MNATRQGLTPALVMLMSVATGLCVASNYYVQPLLNTIAQQFDLSVSLAGFIVTTAQLGYACGLLLLVPLGDRFERRSLIVTMILLAATGMVIIALSHTFLFLLLGTVMTGLFSVAAQILVPLAATLAEPERRGKIVGTVMSGLLLGILLARTVAGGLAQLGGWRTVYWTASLLMVIMALALWRSLPRVKQSVPMSYPQLLASIFRLYAGNRVIRTRAWTGCLSFANFSLLWTSMAFLLSGAPYHFSEGKIGLLGLVGAAGALAARQAGSLADKGKAKLTTRLGLLLMLLSWAAIAWGAEQLVPLIVGILLLDLAVQAVHITNQSVIYAQMPEARNRLNAGYMTSYFIGGAAGSLLSATAYHLAGWYGVCIAGALLTLVNLLIWAGGSRFEPEKIN
>CP028349.1|AVV38833.1|3675155_3675686_+|transcriptional-repressor-MprA
MESSFTPIEQMLNIRANRHKDFPLQEIILTRLCMHMQGKLLDNRNKMLKAQGINETLFMALITLDAQENHSIQPSELSSALGSSRTNATRIADELEKRGWIERRESDHDRRCLHLHLTDKGMEFLRQLLPPQHQSLQYLWSSLSVDEKSQLEGITRKLLNRLDKMDEDQLIASLSR
>CP028349.1|AVV39344.1|3675836_3677009_+|multidrug-export-protein-EmrA
MSATAEAQSPQPSASKKKKRKSVLIVLALIFVLIGIAWGVYWFLVLRHFQETDDAYVAGNQVQVMAQVSGSVNKVWFEDTDFVKKGDVLVSLDKTDAEQAFEKAQTALATSVRQTHQLMINGKQYQASITLQQTALAQAEADLKRREPLGAANLIGREELQHARDAVATAKAQLDVAIQQYNANQAMILNTSLENQPAVQQSAAELRDAWLALQRTEIRSPMDGFVSRRSVQVGSQISTSTPLLAVVPATNLWVDANFKETQLAGVRIGQPATVVADIYGDEVVYQGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELNQDDIARHPLRIGLSTLVKIDTTSKEGSALATSARQQAAYSSNALAIDLAPVNQMITDIVRANAG
>CP028349.1|AVV38834.1|3677025_3678561_+|multidrug-efflux-MFS-transporter-subunit-EmrB
MAQKPLEGMPLVLMTIALSLATFMQVLDSTIANVAIPTIAGNLGASNSQGTWVITSFGVANAISIPLTGWLAKRIGEVKLFTWSTILFAIASWACGMSDSLEMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSVALSLWAMTVIVAPICGPILGGWISDNYHWGWIFFINVPIGVAVVILTLQTLRGRETKTEIRPIDMVGLVLLVVGIGCLQVMLDRGKELDWFNSSEIIVLGVVAVIALSVLLVWELTDDHPIIDLSLFKSRNFTIGCLSISLAYMLYFGSIVLLPQLLQEVYGYTATWAGLASAPVGILPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPPERMAAASSLSNFMRTFAGSVGTSITTTMWTNRESMHHSYLTESITPYNVNSQQMYSQLESMGMTQQQASAYIAQQITNQGLIISANEIFWASAGVFLILLVLIWFARPPFGAGGGGGGAH
>CP028349.1|AVV38835.1|3678726_3679911_-|tRNA/rRNA-methyltransferase
MNDEYKGKSGKVKVMYVRGEDDKSARAPNPRTGKGGHSAARQDDNRRSSGPRTERTQEGGRSAGRRGDDTGRSSSPRRDEGGRGAPRRSDDGAGRRNDRGDDSRGAYGSSDSPWRTVSRAPSADRASSPESDKPDHGGISGKSFVDPEQIRRQRNEETRVYGENACQALFQSRPEAIVRAWFVQEVTPRFREALRWLAANRKAYHVVEDAEITKASGTEHHGGVCFLIKKRMGMAVSEWLSQANTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGLLVNDASLLESGAAVRTAEGGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAQLPEKMVLVLGQEREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQNA
>CP028349.1|AVV38836.1|3680070_3680490_+|thioredoxin-TrxC
MNTVCASCQATNRVPDERLADVAKCGRCGNELFDGEVVNATSANFDKYLQDDLPVVIDFWAPWCGPCVNFAPVFKDVASERSGKVRFIKVNTEAEPALSARFNIRSIPTIMLFKNGERVDMLNGAMPKAPFDEWLDESL
>CP028349.1|AVV38837.1|3680571_3681249_+|DTW-domain-containing-protein
MSDNAVLRLRTQRLARATRPFLARGNRVIRCQGCLLPEANCLCSQIVPQSARSRFCLVMFDTEPMKPSNTGRLIADILPDTQAFGWSRTEPDPLLLAAVRNSDYQPLVVFPASYADPGREVLTTPPTSGKPPLFIMLDGTWTEARKMFRKSPWLDALPVMSLDVSTPSRYTLREAHGEGQHCTAEVAAALLAQAGDRRAAEALSHHFDRFRTAYLAGKPHHAGQA
>CP028349.1|AVV38838.1|3681388_3684046_+|protein-acetyltransferase
MSQRGLEALLRPKSIAVIGASVTPGRAGYFMMRNLLAGGFSGPVLPVTPKYKAVSGVLAWPTIDSLPFAPDLAVICTHSKRNLELLQQLGEKGCKACIILSAPASQSAELKACASQWQIRLLGPNSLGLLAPWQGLNASFSPVPIEKGRIAFISQSAAVSNTILDWAQQRNLGFSWFIALGDSLDTDVDDLLDFLARDGKTSAILLYLEHLSDARRFVSASRSASRNKPILVIKSGRSREAQALLGTHSGLDAAWDAAIQRAGLLRVQDTHELFSAVESLSHMRPLRGDRLMIISNGAAPAALALDELYARNGKLAQLSDETRRQLEAILPAGAGRGNPLDLKDDATAERYAACVEILLDSHELDALMIIHAPSAVAPATETAAHLIDTVARHPRGKLVTLLTNWSGEFSSQAARRAFTQAGIPTWRTPEGTVTAFMHQVEYRRNQKQLRETPALPATLNQDSAHAHQLLSKALARGITSLDTHEVQPVLQAYGLTTLPTWIASDSAAAVAIADQIGYPVALKLRSPDIAHKSEVQGVMLYLRNASEVEHAAEAIFDRVKQTLPQARIEGLLVQSMASRAGAQELRVVVEQDALFGPIIMLGEGGVEWQADKQAAVALPPLNMTLARYLVIQAIKSGKIRSRSALNPLDIPGLSQLLVQVSDLVVDCPEIQRLDIHPLLAAGNDFTLLDVTLTLAPFHGDNETRLAIRPYPQHLEEQVELKDGQFCLFRPILPEDEPLLRDFISQVTKEDLYYRYFSEINEFTHDDLANMTQIDYDREMAIVAVRQHQGRPEIIGVTRAISDADNIDAEFSVLVRSDLKGLGMGRRLLEKMIRYTRHHGLQQLNGITMPHNRGMITLARKLNFHVDIQLDDGIVSLKLSLQNEIS
>CP028349.1|AVV38839.1|3684163_3685519_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MLSKFKRNKHQQHLAELPKLSQSVADMSTLYSPAEFRQTLLEKIAAAQTRICIVALYLENDDAGRAVMDALYHAKQARPELDISILVDWHRAQRGRIGAARGVTNADWYCEMATRYADIAIPVYGIPVNTREALGVLHLKGFIIDDTLLYSGASINDVYLHQHDKYRYDRYQVIRNSQLTDTMYNWITLNLKPAEAVNRLDFAERPSSPEIKNETRQFRQDLRGFNYQFEGNAGNDELAVTPLVGLGKHSLLNKTIFHLMPCAEQKLIICTPYFNLPALLVRNIINLLRQGKQVEIIVGDKTANDFYIAPDQPFKIIGALPYLYEINLRRFLSRLHYYVTTGQLVVRLWKDGENSYHLKGMWVDDEWQLITGNNLNPRAWRLDLENAVLIHDPHQQLAAQREKELTLIRQHTTVVTHFRELESIADYPAKVRKLIRRLRRIRIDRLISRIL
>CP028349.1|AVV38840.1|3685850_3687140_-|MFS-transporter
MTTTNNKIQPDDTRKRIWAIVGASSGNLVEWFDFYVYSFFSLYFAHIFFPQGDTTTQLLQTAGVFAAGFLMRPIGGWLFGYIGDKHGRKNSMLVSVCMMCFGSLVIACLPGYATIGVAAPVILLLARMFQGLSVGGEYGTSATYMSEVALEGRKGFYASFQYVTLIGGQLAAVLTVVLLQFLLTDAELRNWGWRIPFFLGALLAVVALWLRRSLEETSDKTSREHRDAGSVIGLLRNHTRPFLMVLGFTAGGSLSFYTFTTYMQKYLVNTSGMDPKTASGLMTGALLVFMLIQPIIGALSDKIGRRTSMMIFGAGAAICTVPVLTLLQNVQSPGVAFLLIMLALLITSFYTAISGILKAEMFPPQVRALGVGLSYAVANAIFGGSAEYVALLMKKQGIETTFFWYVSAMGAVAFLVSLLLHKRGKGIKL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028349_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028349_5

3841467-3841587

Orphan

Consensus_repeat	Method
GCGTTGGCACGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028349_5

>merge|CP028349|5|3841467-3841587|CRISPRCasFinder
GCGTTGGCACGTTCACGGGCGCACCTCAGGGATGAGGTGCGTACTAAAAACGCCGGGAGCGTTTTTGAACAGCGCAACGCGTTGGCCCGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA

>CP028349|5|4|3841467-3841587|CRISPRCasFinder
GCGTTGGCACGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA	CTAAAAACGCCGGGAGCGTTTTTGAACAGCGCAAC
GCGTTGGCCCGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA

Protein	Signature genes	Signature genes Name	Protein_function
CP028349.1\|AVV38963.1\|3837953_3839276_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
CP028349.1\|AVV38966.1\|3841740_3842979_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
CP028349.1\|AVV38961.1\|3835562_3836765_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
CP028349.1\|AVV38972.1\|3846974_3847850_-\|mechanosensitive-ion-channel-protein-MscS	unknown	unknown	gnl\|CDD\|182386
CP028349.1\|AVV38974.1\|3849225_3850389_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP028349.1\|AVV38975.1\|3850440_3851460_-\|erythrose-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|184122
CP028349.1\|AVV38957.1\|3829858_3830602_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
CP028349.1\|AVV38971.1\|3846217_3846841_-\|arginine-exporter-ArgO	unknown	unknown	gnl\|CDD\|236463
CP028349.1\|AVV38958.1\|3830668_3833542_-\|glycine-dehydrogenase-(aminomethyl-transferring)	unknown	unknown	gnl\|CDD\|235432
CP028349.1\|AVV38973.1\|3848040_3849120_-\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236406
CP028349.1\|AVV38964.1\|3839322_3839901_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
CP028349.1\|AVV38962.1\|3836778_3837957_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
CP028349.1\|AVV39351.1\|3840717_3841311_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
CP028349.1\|AVV38968.1\|3844100_3845006_+\|transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
CP028349.1\|AVV38965.1\|3840071_3840401_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
CP028349.1\|AVV38970.1\|3845350_3846073_-\|oxidative-stress-defense-protein	unknown	unknown	gnl\|CDD\|236840
CP028349.1\|AVV38960.1\|3834032_3835130_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
CP028349.1\|AVV38969.1\|3844989_3845247_+\|hypothetical-protein	unknown	unknown	unknown
CP028349.1\|AVV38959.1\|3833622_3834009_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
CP028349.1\|AVV38967.1\|3843258_3843918_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816

Protein	Function_ID	Function_description	E-value
CP028349.1\|AVV38963.1\|3837953_3839276_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
CP028349.1\|AVV38966.1\|3841740_3842979_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
CP028349.1\|AVV38961.1\|3835562_3836765_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
CP028349.1\|AVV38972.1\|3846974_3847850_-\|mechanosensitive-ion-channel-protein-MscS	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	3.87389e-158
CP028349.1\|AVV38974.1\|3849225_3850389_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP028349.1\|AVV38975.1\|3850440_3851460_-\|erythrose-4-phosphate-dehydrogenase	gnl\|CDD\|184122	PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional.	0
CP028349.1\|AVV38957.1\|3829858_3830602_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	2.16459e-142
CP028349.1\|AVV38971.1\|3846217_3846841_-\|arginine-exporter-ArgO	gnl\|CDD\|236463	PRK09304, PRK09304, arginine exporter ArgO.	4.9423e-114
CP028349.1\|AVV38958.1\|3830668_3833542_-\|glycine-dehydrogenase-(aminomethyl-transferring)	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
CP028349.1\|AVV38964.1\|3839322_3839901_-\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	5.14046e-115
CP028349.1\|AVV38962.1\|3836778_3837957_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
CP028349.1\|AVV39351.1\|3840717_3841311_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	2.75742e-84
CP028349.1\|AVV38968.1\|3844100_3845006_+\|transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	2.70609e-160
CP028349.1\|AVV38965.1\|3840071_3840401_+\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	1.91531e-65
CP028349.1\|AVV38970.1\|3845350_3846073_-\|oxidative-stress-defense-protein	gnl\|CDD\|236840	PRK11087, PRK11087, oxidative stress defense protein; Provisional.	1.02335e-133
CP028349.1\|AVV38960.1\|3834032_3835130_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
CP028349.1\|AVV38973.1\|3848040_3849120_-\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
CP028349.1\|AVV38959.1\|3833622_3834009_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	5.81204e-73
CP028349.1\|AVV38967.1\|3843258_3843918_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	2.28785e-136

>CP028349.1|AVV39351.1|3840717_3841311_+|5-formyltetrahydrofolate-cyclo-ligase
MSSPSMLQRQEIRQQVRHLRRAMTDEQQAQAAEQLAELALNYAPLSAARHIALFLSVDGELNTRPLIARLWHLKKAVYLPVLHPFSPGNLLFQRYSPDTPLIPNKLRIPEPLLDIRQLITLDQLDLMLVPLVAFDQHGQRLGMGGGFYDRTLQNWRQHGFLPVGLAHDCQQVDSLPVAEWDVPLPAVMTPSKLWQWE
>CP028349.1|AVV38965.1|3840071_3840401_+|cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQQDALNSAAEDLNQRLQDLKVRTRVTNTEQLVFIAALNVCHELAQEKVKTRDYAANMEQRIRMLQQTIEQALVEQGRISEREGAKFE
>CP028349.1|AVV38964.1|3839322_3839901_-|YecA-family-protein
MSLQNATPDYNALAAVLSQQGVGMTPAEMHGLLSGILCGGNQDTSWKTLVHDLANEGMAFSHTLAVPLAALHEHTATTLEDDGFLFQLMLPADDDITVFDRADALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRTIAQLGYEEDEDQEELEQSLEEVIEYVRVAALLCHDTFTRPQPTAPEVQKPTLH
>CP028349.1|AVV38963.1|3837953_3839276_-|Xaa-Pro-aminopeptidase
MISLERYQQRRQALLAKMAPGSAALIFAAPEVTRSNDTEYPFRQSSDFSYFTGFNEPQALLVLIKSDENHNHSVLFNRVRDPAAEVWSGRRLGQEAAPEKLGVDRALPWNDIGEQLHLLLNGLDVIYHAQGEYAHADTLVFSALDKLRRGFRQNLSAPATVTDWRPWVHEMRLFKDAEEIALLRRAGEISALAHTRAMRICQPGMFEYQLEGEIHHEFTRHGARYPSYNTIVGAGENGCILHYTENESEMRDGDLVLIDAGCEFYGYAGDITRTFPVNGKFSPAQRAIYDIVLASLNRSLEMFRPGVSIREVNDEVVRIMITGLVELGILEGDVDTLIAEESHRQFYMHGLGHWLGLDVHDVGHYGTPSRDRILEPGMVLTVEPGLYIGPDADVPAQYRGIGIRIEDDIVITEEGIENLTDSVVKEADEIEALMAAAKQA
>CP028349.1|AVV38962.1|3836778_3837957_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MTILIAGGGMTGATLALAISHLTQGTLPVTLIESSEPGSRAHPGFDGRAIALSAGTCQQLADINLWHRIASCATPITDIHVSDRGHAGFVSLAAADYAIPALGQVVELFDVGQRLFAELKKAPGVTLRCPARVTHAQRSEQQVEVTLDSGEQLSGKLLVAADGTRSALAASCGIQWQRDDYQQLAAIANVTTALPHQGRAFERFTEHGPLALLPMSGNRLSLVWCHPLSQRERIEQWSEAEFLSQLQRAFGWRLGKFTHTGQREYYPLALHRAISPVTHRVAVVGNAAQTLHPIAGQGFNLGLRDVMSLAETLAAAHRQQQDPGSYAVLNHYQQRRQPDRAATIGITDGLVRVFANRYGPMVAGRNLGLLAMDHLPWLRNQLAERTLGWVKR
>CP028349.1|AVV38961.1|3835562_3836765_-|FAD-dependent-2-octaprenylphenol-hydroxylase
MQTFDVVIAGGGMVGLAVACGLQGSGLRIAVLEKSPEPPLALSASPSIRVSAINAASERLLQKLDVWSTILSLRCRAYHGMEVWDKDSFGTIAFDDEQQGLSHLGHIIENPVIHNALWQRASACSDVTLMAPSQLQQVAFGDNEAFITLQDGSMLSARLMIAADGANSWLRNKADIPLTFWDYDHHALVANVRTEKPHDAVARQVFHGDGILAFLPMQDPHLSSIVWSLSPQEASRLETMPEALFNQQLSVAFDMRLGLCQLESERKSFPLVARYARNFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIGEIRRLHQQGKDIGQHLYLRRYERSRKHSAAMMLAGMQGFREMFAGNNPAKKLLRDVGLKLADRLPGVKPMMLKQAMGLNDLPAWLR
>CP028349.1|AVV38960.1|3834032_3835130_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MTQQTPLFEQHQACGARMVDFHGWMMPLHYGSQMDEHHVVRSDAGMFDVSHMTIVDLTGPRTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFMSETFFRLVVNSATREKDLAWITQHAEGYGITLTERDDLALIAVQGPQAQQKAQTLFSEEQRLAVAGMKPFFGVQSGDLFIATTGYTGEAGYEIAMPAEEAANFWQRLLAAGVKPAGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTVCWEPADRDFIGREALELQRERGTEKLVGLILTEKGVLRNGQPVRFTDDQGQLQEGIITSGSFSPTLGYSIALARVPASIGSTAIVEIRNRQMPVQVTRPVFVRAGKPVAQ
>CP028349.1|AVV38959.1|3833622_3834009_-|glycine-cleavage-system-protein-GcvH
MSNVPNTLKYRDSHEWVRKEADGSYTVGITEHAQELLGDMVFVDLPEVGATFAAGEECAVAESVKAASDIYAPISGEIVAVNEALTDSPEQVNSEPYDGGWLFKIKASDASEIDMLLDADAYKASIDE
>CP028349.1|AVV38958.1|3830668_3833542_-|glycine-dehydrogenase-(aminomethyl-transferring)
MTQTLSQLEHNGAFIERHIGPSPEQQAQMLDAIGARSLDALISTIVPADIQLPGPPAVGEAATEQQALAELKAIASQNLRYKSWIGMGYSAVITPPVILRNMLENPGWYTAYTPYQPEVSQGRLEALLNFQQLTLDLTGMDIASASLLDEATAAAEAMAMAKRVSKLKNANKFFIADDIHPQTLDVVRTRAETFGFELIIDSADKASDHDDLFGVLLQQVGTTGEAHDYSALIAGLKARKVVVSVAADFMSLVLLEAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFASRDEHKRSMPGRIIGVSRDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIAGLYAVFHGPAGLKRIASRIHRFTNILAAGLQQGGLKLRHQHWFDTLTVEVADKAAVLNRALSFGVNLRSDIHNSVGITLDETTSRDDILALFAILLGDEHGQDLEKLDSEVASESHAIPAGLQRHSEILTHPVFNRHHSETEMMRYMHSLEKKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPAEQATGYLQMIGQLSQWLVQLTGYDALCMQPNSGAQGEYAGLLAIRRYHESRGEGDRHLCLIPSSAHGTNPASAQMAGMDVVVVACDKQGNIDLGDLREKAAQAGDKLSCIMVTYPSTHGVYEETIREVCQIVHQYGGQVYLDGANMNAQVGITTPGYIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIDGVLTQQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASSVAILNANYIASRLQSAYPVLYTGREGRVAHECILDIRPLKEQTGISELDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKIELDRFIDAMLAIRMEIDRVTAGEWPLDDNPLVNAPHTQLEIVSEWSHPYSRELAVFPAGSHNKYWPTVKRLDDVFGDRNLFCSCVPMSDYQ
>CP028349.1|AVV38957.1|3829858_3830602_-|NAD(P)-dependent-oxidoreductase
MKLALVTGGSRGIGRATSLLLAARGYRVAVNYRQREAEAQQLVAQIQQQGGEAFAVQADISDEAQVMAMFAQLDQQSVPLALLVNNAGILFQQCRTEQLDAARLHKVFATNVIGTFLCCREAVKRMGTHHGGQGGAIVNVSSAASRTGAPGEYVDYAASKGAMDTLTKGLSLEVAQQGIRVNGVRPGFIYTEMHADGGEPGRVDRLASIIPMGRGGEAEEVAEAIVWLASDAASYVTGSIIDAAGGR
>CP028349.1|AVV38966.1|3841740_3842979_-|phosphoglycerate-dehydrogenase
MAKVSLEKDKIKFLLVEGVHQSALENLRAAGYTNIEFHKGALDSDALKASIRDAHFIGIRSRSQLTEEIFAAAEKLVAVGCFCIGTNQVDLQAAASRGIPVFNAPFSNTRSVAELVIGEMLLMLRGIPEANAKAHRGIWNKIAKGSFEARGKKLGIIGYGHIGMQLGVLAESLGMHVFFYDIENKLPLGNATQVRHLADLLNMSDVVSLHVPETASTQDMIGAEQLAQMKPGALLINASRGTVVDIPALCDALASKHVGGAAIDVFPTEPATNSEPFISPLSEFDNVILTPHIGGSTEEAQENIGIEVAGKLAKYSDNGSTLSAVNFPEVSLPIHGISASRLLHIHENRPGVLTAINQIFAEQGINIAAQYLQTSPFMGYVVIDIDAEPEVAENALQLMKAIPGTIRARLLY
>CP028349.1|AVV38967.1|3843258_3843918_-|ribose-5-phosphate-isomerase-RpiA
MTQDELKKAVGWAALDYVQPGTVVGVGTGSTAAHFIDALATVRHQIEGAVSSSDASTQKLKSLGIQVFDLNEIDLLSVYVDGADEINPQMQMIKGGGAALTREKIVAAVAETFICIADASKEVDVLGRFPLPVEVIPMARSYVARQLVKMGGLPEYRQNVVTDNGNIILDVHNLRILDPIELEKTINALPGVVTVGLFAARGADIALIGGPDGVKTIKK
>CP028349.1|AVV38968.1|3844100_3845006_+|transcriptional-regulator-ArgP
MKRPDYRTLQALDSVIRERGFERAAQKLCITQSAVSQRIKQLENLFGQPLLVRTVPPRPTEQGQKLLALLHQVELLEEEWLGDENSGTTPLLLSLAVNADSLATWLLPALKDVLADSPVRLNLQVEDETRTQERLRRGEVVGAVSIQPQPLPSCLVDQLGALDYLFVASRDFADRFFPNGVTRSALLKAPAVAFDHLDDMHQAFLQQNFDLSPGSVPCHIVNSSEAFVQMARQGSTCCMIPHLQIERELASGELIDLTPGLCQRRMLYWHRFAPESRLMRRVTDALIAHGHRVLRQDDVAA
>CP028349.1|AVV38969.1|3844989_3845247_+|hypothetical-protein
MTWQPENKNGAKAPFLLLTNRDNQESYNNRKVKREGNRVRRGKRPAAWDKNAGSVFEQRNALARSRAHLRDEVRNCAGRAARDWP
>CP028349.1|AVV38970.1|3845350_3846073_-|oxidative-stress-defense-protein
MKLKALALAAIMSAGALPGVHADELPNGPHVVTSGKATVDARPDIATLSIVVNVSSKDAADAKKQADSRVAQYFDFLQKNGIEKKDIDAANLSTQPEYDYTKEGKSVLKGYRAVRQVQVTLRQLDKLNDLLDGALKSGLNEVRSVELGVANPESYKEQARKAAIKNATQQASQLAEGFNAKLGSIYSIRYQVANYQPMPMNRMYKAAAAADTSAQETYDQQSINFDDQVDVVFELKPNTP
>CP028349.1|AVV38971.1|3846217_3846841_-|arginine-exporter-ArgO
MISLYFQGLALGAALILPLGPQNAFVMNQGVKRQYHLMTAALCSLSDILLICGGIFGGSALLSQSPLLLMVITWAGVAFLLWYGWGALRSAFRGEADLTDGEPLKQSRGRIIATLLAVTWLNPHVYLDTFVVLGSLGGQLPTTTARQWFALGTISASILWFFGLALLAAWLSPRLRTAKAQRIINLLVGAVMWFIALQLARQGIAGF
>CP028349.1|AVV38972.1|3846974_3847850_-|mechanosensitive-ion-channel-protein-MscS
MEDLHVVDGLNNAGNWLIRNQALIISYAVNIVAAIAIIIIGMVIARIISNAVNRLLRARHIDATVADFLSALVRYGVIAFTIIAALGRIGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVTFRPFRTGEFVDLGGVMGTVLHVQIFSTTLRTGDGKIVVVPNGKIISGNIVNFSREPVRRNEFIIGVAYEADVDEVIALLQQVVEADSRVLKEKGIQIGLNELAASSMNFVVRCWSNSGDLQDVYWDLLKNFKRALDGKGIGIPYPQMDVHLHQKSAPEAVETQVQ
>CP028349.1|AVV38973.1|3848040_3849120_-|class-II-fructose-bisphosphate-aldolase
MSKIFDFVKPGVVTGDDVQKIFKVAKENKFALPAVNCVGTDSINAALEAAAKVKAPIIIQFSNGGAAFIAGKGFKTDKPQGAAIFGAIAGAHHVHLMAEQYGVPVILHTDHCAKKLLPWIDGLLDAGEEYFQKNGKPLFSSHMIDLSEESLEENIEISSKYLARMAKLDMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVNYAYEKLHAISPRFTIAASFGNVHGVYKPGNVKLTPTILRDSQKYVCEKHGLPHNALDFVFHGGSGSSAAEIEESISYGVIKMNIDTDTQWATWDGILQYYKKNEGYLQSQLGNPEGDDKPNKKYYDPRVWLRSAQASMVVRLEQAFKELNAVDVL
>CP028349.1|AVV38974.1|3849225_3850389_-|phosphoglycerate-kinase
MSVIKMTDLDLAGKRVLIRADLNVPVKEGKVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEKLSGTNVTLAKDYLDGVEVGAGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGVGKFAPIACAGPLLSAELEALGKVMSNPERPLVAVVGGSKVSTKFDVLQSLVKIADTVIVGGGIANTFVAIDNNVGKSLYEPDFVEAAKGLRDQHGIPVPTDSRVGTEFSETAPATVKKVSEVADNEEIMDFGDETAQAMAAILKDAKTILWNGPVGVFEFPNFRKGTEIVANAIADSDAFSVAGGGDTLAAIDLFGIEDKISYISTGGGAFLEFVEGKKLPAVAMLEERAKQ
>CP028349.1|AVV38975.1|3850440_3851460_-|erythrose-4-phosphate-dehydrogenase
MTVRVAINGFGRIGRNVLRALYETGRRAEITVVAINELAEATGMAHLLKYDTSHGRFAFDVRQERDVMWVGGDTLRILHRADIADLPWRELDVDVVLDCTGVYGSRADGEAHLQAGAKKVLFSHPGGNDLDATVVYGVNQQALTASDRIVSNASCTTNCIIPVIKLLDDAFGIESGTVTTIHSAMHDQQVIDAYHSDLRRTRAASQSIIPVDTRLAAGITRIFPKFNDRFEAIAVRVPTINVTAIDLSVSVHNAVTACDVNTLLRSAAEGAFRGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFANRMLDTTLAMAASGFR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP028349_2	2.2\|580481\|21\|CP028349\|PILER-CR	580481-580501	21	CP028349.1	580540-580560	1	0.952

1. spacer 2.2|580481|21|CP028349|PILER-CR matches to position: 580540-580560, mismatch: 1, identity: 0.952

tggatcctcacaatctgctaa	CRISPR spacer
tggaacctcacaatctgctaa	Protospacer
**** ****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028349_5	5.1\|3841510\|35\|CP028349\|CRISPRCasFinder	3841510-3841544	35	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	450661-450695	3	0.914
CP028349_5	5.1\|3841510\|35\|CP028349\|CRISPRCasFinder	3841510-3841544	35	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	160197-160231	3	0.914
CP028349_5	5.1\|3841510\|35\|CP028349\|CRISPRCasFinder	3841510-3841544	35	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	267240-267274	3	0.914
CP028349_5	5.1\|3841510\|35\|CP028349\|CRISPRCasFinder	3841510-3841544	35	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	539503-539537	3	0.914
CP028349_5	5.1\|3841510\|35\|CP028349\|CRISPRCasFinder	3841510-3841544	35	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	116058-116092	3	0.914
CP028349_4	4.1\|3673372\|38\|CP028349\|CRISPRCasFinder	3673372-3673409	38	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	160195-160232	4	0.895
CP028349_4	4.1\|3673372\|38\|CP028349\|CRISPRCasFinder	3673372-3673409	38	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	267238-267275	4	0.895
CP028349_4	4.1\|3673372\|38\|CP028349\|CRISPRCasFinder	3673372-3673409	38	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	539502-539539	4	0.895
CP028349_4	4.1\|3673372\|38\|CP028349\|CRISPRCasFinder	3673372-3673409	38	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	450660-450697	4	0.895
CP028349_4	4.1\|3673372\|38\|CP028349\|CRISPRCasFinder	3673372-3673409	38	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	116056-116093	4	0.895
CP028349_5	5.1\|3841510\|35\|CP028349\|CRISPRCasFinder	3841510-3841544	35	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	15149-15183	4	0.886
CP028349_3	3.1\|2935930\|27\|CP028349\|CRISPRCasFinder	2935930-2935956	27	NC_048742	Streptomyces phage Gilson, complete genome	68293-68319	5	0.815
CP028349_4	4.1\|3673372\|38\|CP028349\|CRISPRCasFinder	3673372-3673409	38	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	15147-15184	5	0.868
CP028349_4	4.1\|3673372\|38\|CP028349\|CRISPRCasFinder	3673372-3673409	38	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	290748-290785	6	0.842
CP028349_4	4.1\|3673372\|38\|CP028349\|CRISPRCasFinder	3673372-3673409	38	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	116369-116406	6	0.842

1. spacer 5.1|3841510|35|CP028349|CRISPRCasFinder matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 3, identity: 0.914

ctaaaaacgccgggagcgtttttgaacagcgcaac	CRISPR spacer
ataaaaacgccgggagcgtttttgaacaacgcaaa	Protospacer
 ***************************.*****

2. spacer 5.1|3841510|35|CP028349|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.914

ctaaaaacgccgggagcgtttttgaacagcgcaac	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaac	Protospacer
 .**************************.******

3. spacer 5.1|3841510|35|CP028349|CRISPRCasFinder matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 3, identity: 0.914

ctaaaaacgccgggagcgtttttgaacagcgcaac	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaac	Protospacer
 .**************************.******

4. spacer 5.1|3841510|35|CP028349|CRISPRCasFinder matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 3, identity: 0.914

ctaaaaacgccgggagcgtttttgaacagcgcaac	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaac	Protospacer
 .**************************.******

5. spacer 5.1|3841510|35|CP028349|CRISPRCasFinder matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 3, identity: 0.914

ctaaaaacgccgggagcgtttttgaacagcgcaac	CRISPR spacer
ataaaaacgccgggagcgtttttgaacaacgcaaa	Protospacer
 ***************************.*****

6. spacer 4.1|3673372|38|CP028349|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.895

actaaaaacgccgggagcgtttttgaacaacgcaacgt	CRISPR spacer
gacaaaaacgccgggagcgtttttgaacaacgcaacgc	Protospacer
. .**********************************.

7. spacer 4.1|3673372|38|CP028349|CRISPRCasFinder matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 4, identity: 0.895

actaaaaacgccgggagcgtttttgaacaacgcaacgt	CRISPR spacer
gacaaaaacgccgggagcgtttttgaacaacgcaacgc	Protospacer
. .**********************************.

8. spacer 4.1|3673372|38|CP028349|CRISPRCasFinder matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 4, identity: 0.895

actaaaaacgccgggagcgtttttgaacaacgcaacgt	CRISPR spacer
gacaaaaacgccgggagcgtttttgaacaacgcaacgc	Protospacer
. .**********************************.

9. spacer 4.1|3673372|38|CP028349|CRISPRCasFinder matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 4, identity: 0.895

actaaaaacgccgggagcgtttttgaacaacgcaacgt	CRISPR spacer
gataaaaacgccgggagcgtttttgaacaacgcaaagc	Protospacer
. ********************************* *.

10. spacer 4.1|3673372|38|CP028349|CRISPRCasFinder matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 4, identity: 0.895

actaaaaacgccgggagcgtttttgaacaacgcaacgt	CRISPR spacer
gataaaaacgccgggagcgtttttgaacaacgcaaagc	Protospacer
. ********************************* *.

11. spacer 5.1|3841510|35|CP028349|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.886

ctaaaaacgccgggagcgtttttgaacagcgcaac	CRISPR spacer
acaaaaacgccgggagcatttttgaacaacgcaac	Protospacer
 .***************.**********.******

12. spacer 3.1|2935930|27|CP028349|CRISPRCasFinder matches to NC_048742 (Streptomyces phage Gilson, complete genome) position: , mismatch: 5, identity: 0.815

gcagatgcatgcgctaaagttgggggt	CRISPR spacer
gcagatgcgtgcgctaaagttcaaggg	Protospacer
********.************ ..**

13. spacer 4.1|3673372|38|CP028349|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.868

actaaaaacgccgggagcgtttttgaacaacgcaacgt	CRISPR spacer
gacaaaaacgccgggagcatttttgaacaacgcaacgc	Protospacer
. .***************.******************.

14. spacer 4.1|3673372|38|CP028349|CRISPRCasFinder matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.842

actaaaaacgccgggagcgtttttgaacaacgcaacgt	CRISPR spacer
gagaataacgccgggagcgtttctgaacaacgcaacgc	Protospacer
.  ** ****************.**************.

15. spacer 4.1|3673372|38|CP028349|CRISPRCasFinder matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 6, identity: 0.842

actaaaaacgccgggagcgtttttgaacaacgcaacgt	CRISPR spacer
gagaataacgccgggagcgtttctgaacaacgcaacgc	Protospacer
.  ** ****************.**************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1371972 : 1381643

Streptococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV36831.1\|1371972_1373085_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-110	56.0
AVV36832.1\|1373323_1374427_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.7e-59	42.4
AVV36833.1\|1374437_1375691_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.5e-91	44.1
AVV36834.1\|1376051_1376783_+	chromophore lyase	A0A2I6PIE7	Escherichia_phage	4.9e-47	37.5
AVV36835.1\|1377205_1377484_+	hypothetical protein	NA	NA	NA	NA
AVV36836.1\|1377688_1378156_+	lysozyme	H9C148	Vibrio_phage	1.0e-26	45.3
AVV36837.1\|1378152_1378500_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.4e-20	44.7
AVV36838.1\|1378496_1378790_+	hypothetical protein	NA	NA	NA	NA
AVV36839.1\|1378994_1380749_+	amylovoran biosynthesis protein AmsF	A0A1S6L3G8	Erwinia_phage	2.7e-152	46.5
AVV36840.1\|1381430_1381643_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	9.3e-23	71.4

DBSCAN-SWA_2

1443393 : 1451119

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV36892.1\|1443393_1444542_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.5e-90	46.4
AVV36893.1\|1444541_1444874_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.7e-11	36.3
AVV36894.1\|1444899_1446747_+	protein translocase subunit SecD	NA	NA	NA	NA
AVV36895.1\|1446757_1447726_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.1e-45	40.3
AVV36896.1\|1447785_1448364_-	hypothetical protein	NA	NA	NA	NA
AVV36897.1\|1448380_1448818_-	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	2.5e-06	51.9
AVV36898.1\|1449004_1449454_+	transcriptional regulator NrdR	NA	NA	NA	NA
AVV36899.1\|1449457_1450558_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.3e-47	34.0
AVV36900.1\|1450648_1451119_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-30	48.0

DBSCAN-SWA_3

1923801 : 1964980

Enterobacteria_phage(25.58%)

capsid,integrase,portal,terminase,tail,holin,head,plate

attL 1923641:1923700|attR 1965103:1965162

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1923641:1923700	attL	NA	NA	NA	NA
AVV37317.1\|1923801_1924824_-\|integrase	integrase	H9C152	Pectobacterium_phage	9.4e-121	62.4
AVV39253.1\|1924823_1925051_-	hypothetical protein	K7PHA0	Enterobacterial_phage	2.5e-10	43.1
AVV37318.1\|1925056_1925533_-	SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.0e-66	75.5
AVV37319.1\|1925532_1925847_-	hypothetical protein	A0A222YY67	Escherichia_phage	3.9e-33	61.5
AVV37320.1\|1925859_1926264_-	hypothetical protein	A0A248SL59	Klebsiella_phage	1.8e-14	40.7
AVV37321.1\|1926260_1926704_-	hypothetical protein	NA	NA	NA	NA
AVV37322.1\|1927665_1928127_+	hypothetical protein	NA	NA	NA	NA
AVV37323.1\|1928490_1928694_+	fumarate hydratase FumD	I6R0R9	Salmonella_phage	6.4e-05	43.3
AVV39254.1\|1928950_1929589_-	LexA family transcriptional repressor	K7PH19	Enterobacteria_phage	4.4e-108	87.7
AVV37324.1\|1929706_1929922_+	transcriptional regulator	K7PKH4	Enterobacteria_phage	5.0e-24	72.9
AVV37325.1\|1929975_1930524_+	DNA-binding protein	A0A1C9II13	Salmonella_phage	2.8e-55	62.0
AVV37326.1\|1930710_1930953_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.3e-09	62.3
AVV37327.1\|1930882_1931776_+	transcriptional regulator	A0A248SL49	Klebsiella_phage	2.9e-33	48.0
AVV37328.1\|1931789_1932224_+	hypothetical protein	NA	NA	NA	NA
AVV37329.1\|1932339_1933641_+	chromosome partitioning protein ParB	A0A2H4J902	uncultured_Caudovirales_phage	4.2e-81	70.0
AVV37330.1\|1933763_1934297_+	hypothetical protein	NA	NA	NA	NA
AVV37331.1\|1934941_1935982_+	hypothetical protein	NA	NA	NA	NA
AVV39255.1\|1936243_1937023_+	DNA-binding protein	Q8SBE6	Shigella_phage	4.2e-89	63.2
AVV37332.1\|1937030_1938053_+	hypothetical protein	A0A1C9IHZ5	Salmonella_phage	9.5e-97	52.4
AVV37333.1\|1938074_1938479_+	antitermination protein	S5M7R9	Escherichia_phage	1.7e-25	47.2
AVV37334.1\|1938607_1938889_-	hypothetical protein	NA	NA	NA	NA
AVV37335.1\|1938982_1939192_-	hypothetical protein	NA	NA	NA	NA
AVV37336.1\|1939266_1939629_+\|holin	phage holin, lambda family	NA	NA	NA	NA
AVV37337.1\|1939612_1940245_+	hypothetical protein	F1C5D2	Cronobacter_phage	6.8e-45	46.7
AVV37338.1\|1940232_1940688_+	Rz lytic protein	NA	NA	NA	NA
AVV37339.1\|1940902_1941427_+	hypothetical protein	NA	NA	NA	NA
AVV37340.1\|1941560_1941770_+	hypothetical protein	K7PJU3	Enterobacteria_phage	7.7e-14	50.0
AVV37341.1\|1941820_1942171_+	HNH endonuclease	F1C587	Cronobacter_phage	1.5e-41	71.3
AVV37342.1\|1942701_1943166_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	8.2e-48	61.4
AVV37343.1\|1943119_1944865_+\|terminase	phage terminase small subunit P27 family	M4QNU0	Tetraselmis_viridis_virus	8.8e-135	43.5
AVV37344.1\|1944864_1946169_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	6.2e-194	75.6
AVV37345.1\|1946180_1947026_+	peptidase S14	K7PH05	Enterobacteria_phage	7.8e-105	70.5
AVV37346.1\|1947038_1948253_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	5.6e-181	80.8
AVV37347.1\|1948641_1948971_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	1.6e-21	51.0
AVV37348.1\|1948972_1949362_+\|head,tail	head-tail adaptor protein	U5P0R0	Shigella_phage	5.6e-34	58.1
AVV37349.1\|1949354_1949861_+	hypothetical protein	Q8HAC8	Salmonella_phage	2.9e-70	77.1
AVV37350.1\|1949857_1950418_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	4.6e-69	66.1
AVV37351.1\|1950421_1950610_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	6.1e-10	63.0
AVV37352.1\|1950609_1952106_+\|tail	phage tail protein	U5P0H3	Shigella_phage	2.2e-171	62.7
AVV37353.1\|1952105_1952462_+\|tail	phage tail protein	Q8W622	Enterobacteria_phage	2.0e-49	83.1
AVV37354.1\|1952458_1952728_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	1.1e-33	77.5
AVV39256.1\|1952694_1952877_+	hypothetical protein	NA	NA	NA	NA
AVV37355.1\|1952869_1954753_+\|tail	phage tail tape measure protein	M1FQW0	Enterobacteria_phage	2.2e-171	75.2
AVV37356.1\|1954814_1955342_+	hypothetical protein	NA	NA	NA	NA
AVV37357.1\|1955394_1956771_+	DNA circularization protein	A0A192Y5U9	Salmonella_phage	9.7e-129	53.5
AVV37358.1\|1956767_1957838_+\|plate	baseplate protein	M1FN92	Enterobacteria_phage	5.0e-141	69.1
AVV37359.1\|1957837_1958395_+\|plate	baseplate assembly protein	A0A192Y8K5	Salmonella_phage	7.8e-61	64.9
AVV37360.1\|1958391_1958805_+	hypothetical protein	A0A192Y6D0	Salmonella_phage	1.7e-44	62.8
AVV37361.1\|1958797_1959865_+\|plate	phage baseplate protein	M1FQW3	Enterobacteria_phage	3.0e-130	65.4
AVV37362.1\|1959855_1960437_+	hypothetical protein	O22003	Shigella_phage	6.4e-66	63.2
AVV37363.1\|1960439_1960958_+	hypothetical protein	O22004	Shigella_phage	9.6e-21	39.4
AVV37364.1\|1960959_1961370_+	hypothetical protein	U5P083	Shigella_phage	1.8e-22	45.0
AVV37365.1\|1961353_1962529_-	hypothetical protein	NA	NA	NA	NA
AVV37366.1\|1962682_1962925_+	phage repressor protein	A0A2H4J4R6	uncultured_Caudovirales_phage	7.6e-13	54.2
AVV37367.1\|1963069_1964134_-	hypothetical protein	A0A2H4JA46	uncultured_Caudovirales_phage	2.7e-14	26.6
AVV37368.1\|1964414_1964654_+	hypothetical protein	NA	NA	NA	NA
AVV37369.1\|1964656_1964980_+	phage repressor protein	A0A2H4J4R6	uncultured_Caudovirales_phage	6.3e-39	71.0
1965103:1965162	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2303135 : 2316986

Tupanvirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV37661.1\|2303135_2305064_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.8e-126	36.9
AVV37662.1\|2305067_2305619_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.7e-15	32.9
AVV37663.1\|2305718_2305916_+	50S ribosomal protein L35	NA	NA	NA	NA
AVV37664.1\|2305960_2306317_+	50S ribosomal protein L20	NA	NA	NA	NA
AVV37665.1\|2306631_2307615_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.9e-34	37.6
AVV37666.1\|2307629_2310017_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	5.4e-10	32.0
AVV37667.1\|2310021_2310324_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.3e-13	40.0
AVV37668.1\|2310503_2311487_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
AVV37669.1\|2311537_2312083_+	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	7.7e-13	37.4
AVV37670.1\|2312083_2312833_+	vitamin B12 ABC transporter ATP-binding protein BtuD	W5SAS9	Pithovirus	1.3e-07	26.9
AVV37671.1\|2312901_2313360_+	endopeptidase	A0A217EQL1	Bacillus_phage	5.5e-12	37.5
AVV37672.1\|2313654_2314401_+	diguanylate phosphodiesterase	NA	NA	NA	NA
AVV37673.1\|2314480_2315932_+	YdiU family protein	NA	NA	NA	NA
AVV37674.1\|2315939_2316986_-	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	9.4e-84	50.0

DBSCAN-SWA_5

2447444 : 2487166

Klebsiella_phage(21.74%)

capsid,integrase,portal,terminase,tail,holin,head

attL 2446646:2446661|attR 2490628:2490643

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2446646:2446661	attL	NA	NA	NA	NA
AVV37791.1\|2447444_2449286_-	TonB-dependent siderophore receptor	A0A1B0VCF0	Salmonella_phage	4.3e-132	65.8
AVV37792.1\|2449531_2450710_+\|integrase	integrase	F1C5A4	Cronobacter_phage	9.7e-170	71.4
AVV39280.1\|2450690_2450882_-	AlpA family transcriptional regulator	A0A0M4RTZ2	Salmonella_phage	2.3e-12	55.7
AVV37793.1\|2450932_2451280_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	7.5e-38	66.1
AVV37794.1\|2451279_2451756_-	SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	6.9e-66	74.2
AVV37795.1\|2451755_2452340_-	hypothetical protein	NA	NA	NA	NA
AVV37796.1\|2452352_2452757_-	hypothetical protein	A0A248SL59	Klebsiella_phage	4.7e-15	40.7
AVV37797.1\|2452753_2453197_-	hypothetical protein	NA	NA	NA	NA
AVV37798.1\|2453208_2453373_-	DUF1317 domain-containing protein	NA	NA	NA	NA
AVV37799.1\|2453359_2453878_-	hypothetical protein	A0A248SL95	Klebsiella_phage	2.3e-38	43.0
AVV39281.1\|2454858_2455512_-	LexA family transcriptional repressor	K7PLZ5	Enterobacterial_phage	6.5e-67	57.1
AVV37800.1\|2455611_2455809_+	hypothetical protein	H9C161	Pectobacterium_phage	1.4e-12	54.2
AVV37801.1\|2455833_2456370_+	hypothetical protein	K7PJS5	Enterobacterial_phage	6.8e-22	38.2
AVV37802.1\|2456469_2456658_+	hypothetical protein	NA	NA	NA	NA
AVV37803.1\|2456657_2456840_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AVV37804.1\|2456836_2457733_+	transcriptional regulator	H2DE83	Erwinia_phage	3.7e-36	62.2
AVV37805.1\|2457745_2458180_+	hypothetical protein	NA	NA	NA	NA
AVV37806.1\|2458295_2459759_+	chromosome partitioning protein ParB	A0A2H4J902	uncultured_Caudovirales_phage	2.4e-77	72.0
AVV37807.1\|2459755_2460052_+	hypothetical protein	Q6UAT9	Klebsiella_phage	9.9e-31	64.6
AVV37808.1\|2460048_2460246_+	hypothetical protein	NA	NA	NA	NA
AVV39282.1\|2460242_2460608_+	hypothetical protein	A5LH74	Enterobacteria_phage	6.0e-38	60.8
AVV37809.1\|2460762_2461479_+	phage regulatory protein/antirepressor Ant	A0A059VF66	Pseudomonas_phage	4.7e-50	51.1
AVV37810.1\|2461475_2462492_+	hypothetical protein	A0A1C9IHZ5	Salmonella_phage	1.6e-96	53.0
AVV37811.1\|2462513_2462942_+	antitermination protein Q	U5P0A5	Shigella_phage	4.6e-45	69.2
AVV37812.1\|2462992_2463178_+	hypothetical protein	NA	NA	NA	NA
AVV37813.1\|2463245_2463422_+	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	2.5e-13	63.8
AVV37814.1\|2463470_2463878_+	antitoxin	F1C593	Cronobacter_phage	1.1e-40	64.4
AVV37815.1\|2464034_2464388_+\|holin	phage holin, lambda family	NA	NA	NA	NA
AVV37816.1\|2464371_2464797_+	lysozyme	A0A0B5KZG2	Acinetobacter_phage	1.2e-37	60.0
AVV37817.1\|2464793_2465228_+	Rz lytic protein	NA	NA	NA	NA
AVV37818.1\|2465118_2465373_+	peptidase	U5P461	Shigella_phage	3.5e-08	42.9
AVV37819.1\|2465381_2465621_+	hypothetical protein	A0A291LBC4	Klebsiella_phage	1.5e-16	55.1
AVV37820.1\|2465663_2465852_-	hypothetical protein	NA	NA	NA	NA
AVV37821.1\|2466004_2466184_-	hypothetical protein	A0A192Y6A8	Salmonella_phage	1.7e-14	59.3
AVV37822.1\|2466303_2467761_+	glycosyltransferase	K7PKP3	Enterobacterial_phage	3.8e-216	72.8
AVV37823.1\|2467745_2468360_+	hypothetical protein	K7PGW6	Enterobacterial_phage	5.5e-84	73.7
AVV37824.1\|2468328_2468682_+	HNH endonuclease	A0A1P8DTD1	Proteus_phage	6.2e-48	73.3
AVV37825.1\|2468899_2469373_+\|terminase	phage terminase small subunit P27 family	A0A1P8DTK5	Proteus_phage	3.7e-64	73.9
AVV37826.1\|2469376_2471107_+\|terminase	terminase	A0A1P8DTK0	Proteus_phage	2.6e-272	77.1
AVV37827.1\|2471106_2472411_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	3.9e-204	80.6
AVV37828.1\|2472421_2473270_+	peptidase S14	K7PH05	Enterobacteria_phage	2.8e-94	66.2
AVV37829.1\|2473279_2474491_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.9e-161	73.9
AVV37830.1\|2474533_2474860_+	hypothetical protein	K7PKT4	Enterobacteria_phage	9.2e-30	51.9
AVV37831.1\|2474856_2475192_+\|head,tail	head-tail adaptor protein	Q7Y406	Yersinia_phage	3.3e-22	54.1
AVV37832.1\|2475184_2475568_+	hypothetical protein	Q6UAX2	Klebsiella_phage	5.9e-36	53.2
AVV39283.1\|2475570_2475972_+	hypothetical protein	Q6UAX1	Klebsiella_phage	1.1e-48	76.5
AVV37833.1\|2476005_2476458_+\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	7.0e-60	75.5
AVV37834.1\|2476512_2476881_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	5.4e-26	52.5
AVV37835.1\|2476901_2477123_+	hypothetical protein	Q6UAW9	Klebsiella_phage	1.2e-17	58.9
AVV37836.1\|2477122_2480470_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	5.5e-295	63.2
AVV37837.1\|2480472_2480814_+\|tail	phage tail protein	E4WL34	Enterobacteria_phage	8.7e-31	55.9
AVV37838.1\|2480865_2481603_+\|tail	phage minor tail protein L	M9NYX1	Enterobacteria_phage	1.8e-121	81.2
AVV37839.1\|2481605_2482325_+	peptidase P60	M9NZD8	Enterobacteria_phage	3.8e-100	68.5
AVV37840.1\|2482317_2482941_+\|tail	tail assembly protein	K7PH59	Enterobacterial_phage	1.1e-63	60.4
AVV37841.1\|2482997_2486204_+	host specificity protein	E4WL39	Enterobacteria_phage	0.0e+00	64.1
AVV37842.1\|2486213_2486519_+	hypothetical protein	A0A192Y8D4	Enterobacteria_phage	1.4e-11	41.2
AVV37843.1\|2486515_2487166_+	hypothetical protein	G8C7R6	Escherichia_phage	1.1e-45	40.6
2490628:2490643	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3143884 : 3164318

Synechococcus_phage(35.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV38413.1\|3143884_3144496_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase	A0A2H4UVM0	Bodo_saltans_virus	7.8e-14	28.6
AVV38414.1\|3144610_3145087_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AVV38415.1\|3145153_3145945_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVV38416.1\|3146051_3147350_+	hypothetical protein	NA	NA	NA	NA
AVV38417.1\|3147385_3148795_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QGJ9	Cyanophage	2.5e-31	30.4
AVV38418.1\|3148946_3150008_-	hypothetical protein	A0A1D8KNV9	Synechococcus_phage	9.7e-36	35.0
AVV38419.1\|3150012_3150648_-	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	1.6e-38	41.7
AVV38420.1\|3150637_3151279_-	hypothetical protein	A0A2H4UUJ1	Bodo_saltans_virus	8.5e-19	36.7
AVV38421.1\|3151291_3152017_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.4e-11	25.2
AVV38422.1\|3152013_3152832_-	ABC transporter permease	NA	NA	NA	NA
AVV38423.1\|3152831_3153887_-	hypothetical protein	NA	NA	NA	NA
AVV38424.1\|3153918_3154851_-	hypothetical protein	M4R1H4	Synechococcus_phage	1.9e-11	24.0
AVV38425.1\|3154837_3155866_-	hypothetical protein	NA	NA	NA	NA
AVV38426.1\|3155858_3157502_-	hypothetical protein	NA	NA	NA	NA
AVV38427.1\|3157504_3158260_-	glycosyl transferase family 2	A0A1D8KNV9	Synechococcus_phage	2.6e-59	50.2
AVV38428.1\|3158261_3158588_-	hypothetical protein	A0A222YXE6	Synechococcus_phage	1.7e-12	36.4
AVV38429.1\|3159131_3160214_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.5e-96	51.9
AVV38430.1\|3160213_3161077_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.7e-112	67.4
AVV38431.1\|3161119_3162274_+	acyltransferase	Q9MC93	Pseudomonas_phage	3.3e-05	28.3
AVV38432.1\|3162359_3163373_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.7e-74	43.1
AVV38433.1\|3163415_3164318_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	9.7e-45	40.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP028352

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 5332

Klebsiella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV39947.1\|426_762_+	hypothetical protein	NA	NA	NA	NA
AVV39948.1\|1130_1385_+	hypothetical protein	A0A248SLB9	Klebsiella_phage	3.6e-05	52.8
AVV39949.1\|1567_2017_+	SamA	A0A1W6JNS2	Morganella_phage	2.7e-27	52.1
AVV39950.1\|2026_3301_+	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.8e-145	60.9
AVV39951.1\|3423_3756_-	hypothetical protein	NA	NA	NA	NA
AVV39952.1\|3752_4208_-	hypothetical protein	NA	NA	NA	NA
AVV39953.1\|4207_5332_-	chromosome partitioning protein ParB	S5WII0	Leptospira_phage	3.4e-07	25.4

DBSCAN-SWA_2

10039 : 10792

Macacine_betaherpesvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV39957.1\|10039_10792_-	resolvase	I3WFA4	Macacine_betaherpesvirus	7.9e-16	43.0

DBSCAN-SWA_3

18580 : 21683

Pseudomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV39962.1\|18580_20605_+	acyltransferase	B5WZU0	Pseudomonas_phage	5.4e-43	30.8
AVV39963.1\|20657_21683_-	DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	4.9e-101	54.8

DBSCAN-SWA_4

26387 : 28805

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV39969.1\|26387_27677_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	3.5e-120	53.2
AVV39970.1\|27720_28428_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
AVV39971.1\|28424_28805_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	8.2e-30	58.3

DBSCAN-SWA_5

32906 : 34103

Morganella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV39975.1\|32906_33284_-	peptidase	A0A1W6JNS2	Morganella_phage	3.7e-14	39.1
AVV39976.1\|33422_34103_+	DUF159 family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.0e-110	80.1

DBSCAN-SWA_6

37537 : 38071

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV39980.1\|37537_38071_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.9e-19	35.2

DBSCAN-SWA_7

59894 : 64676

Idiomarinaceae_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV40003.1\|59894_64676_-	DNA primase	A0A088F8A2	Idiomarinaceae_phage	1.7e-15	28.0

DBSCAN-SWA_8

69659 : 70124

Ralstonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV40010.1\|69659_70124_-	lytic transglycosylase	A0A0A8J856	Ralstonia_phage	3.4e-09	36.1

DBSCAN-SWA_9

79460 : 79844

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV40020.1\|79460_79844_-	HNH endonuclease	A0A1P8DTS4	Salmonella_phage	1.9e-18	39.4

DBSCAN-SWA_10

86523 : 90141

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVV40029.1\|86523_86841_-	addiction module antidote protein, HigA family	A0A2L1IV52	Escherichia_phage	1.0e-17	52.3
AVV40030.1\|86840_87122_-	Killer protein	A0A2L1IV28	Escherichia_phage	7.7e-25	57.0
AVV40031.1\|87118_87925_-	hypothetical protein	NA	NA	NA	NA
AVV40032.1\|87921_88368_-	hypothetical protein	NA	NA	NA	NA
AVV40033.1\|88464_90141_-	restriction endonuclease subunit M	A0A059VA49	Pseudomonas_phage	5.6e-155	52.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028350

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028349

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP028352

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection