CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP027481	Pseudomonas koreensis strain P19E3 plasmid p4, complete sequence	0 crisprs	NA	0
CP027480	Pseudomonas koreensis strain P19E3 plasmid p3, complete sequence	0 crisprs	NA	2
CP027477	Pseudomonas koreensis strain P19E3 chromosome, complete genome	5 crisprs	csa3,DinG,cas3,DEDDh,PD-DExK,RT	7
CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	0 crisprs	DEDDh	1
CP027479	Pseudomonas koreensis strain P19E3 plasmid p2, complete sequence	0 crisprs	DEDDh	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

124236 : 132844

Escherichia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX93296.1\|124236_125343_+	toxic anion resistance protein	K4K6C7	Caulobacter_phage	1.2e-12	24.7
AVX93297.1\|125342_126311_+	hypothetical protein	NA	NA	NA	NA
AVX93298.1\|126510_128010_+	replicative DNA helicase	O80281	Escherichia_phage	1.3e-126	52.8
AVX93299.1\|128086_129481_+	replicative DNA helicase	O80281	Escherichia_phage	7.2e-148	59.3
AVX93300.1\|129527_130025_+	hypothetical protein	NA	NA	NA	NA
AVX93301.1\|130051_131080_-	hypothetical protein	C5IHN5	Burkholderia_virus	3.0e-26	41.6
AVX93302.1\|131142_131571_+	hypothetical protein	A0A1W6JNS2	Morganella_phage	6.9e-17	42.6
AVX93303.1\|131560_132844_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.1e-97	45.5

DBSCAN-SWA_2

218033 : 226759

Pseudomonas_virus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX93359.1\|218033_218231_+	hypothetical protein	A0A0A7NRW5	Shigella_phage	5.4e-09	63.3
AVX93455.1\|218424_218604_+	hypothetical protein	NA	NA	NA	NA
AVX93360.1\|218749_219760_+	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	1.7e-122	64.8
AVX93361.1\|219762_220632_+	hypothetical protein	A0A2I7S9Y6	Vibrio_phage	1.1e-05	28.8
AVX93362.1\|220699_221221_+	hypothetical protein	NA	NA	NA	NA
AVX93363.1\|221456_221861_+	molecular chaperone DnaK	NA	NA	NA	NA
AVX93364.1\|221912_222254_+	hypothetical protein	A0A0U4B0M9	Pseudomonas_phage	2.9e-10	49.3
AVX93365.1\|222273_223356_+	hypothetical protein	L7TI83	Pseudomonas_virus	5.1e-32	44.1
AVX93366.1\|223474_224395_+	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	3.6e-111	63.9
AVX93367.1\|224548_225115_+	hypothetical protein	NA	NA	NA	NA
AVX93368.1\|225277_226759_+	DNA cytosine methyltransferase	A0A0N9SK84	Staphylococcus_phage	5.5e-05	25.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP027477

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CRISPR-Cas detection and classification

Crispr_ID: CP027477_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027477_1

37877-37975

Orphan

Consensus_repeat	Method
ACAAAACCTGTGGGAGCTGGCTTGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027477_1

>merge|CP027477|1|37877-37975|CRISPRCasFinder
ACAAAACCTGTGGGAGCTGGCTTGCCAGACTCCTACAGGTTTTTTTGTTCCAGCGGATTTTGAACTCGTACACAAACCCTGTGGGAGCTGGCTTGCCAG

>CP027477|1|1|37877-37975|CRISPRCasFinder
ACAAAACCTGTGGGAGCTGGCTTGCCAG	ACTCCTACAGGTTTTTTTGTTCCAGCGGATTTTGAACTCGTAC
ACAAACCCTGTGGGAGCTGGCTTGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP027477.1\|AVX86819.1\|42724_43873_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
CP027477.1\|AVX86809.1\|31259_32210_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188320
CP027477.1\|AVX86808.1\|29630_31145_-\|choline-sulfatase	unknown	unknown	gnl\|CDD\|274570
CP027477.1\|AVX86822.1\|45609_46233_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|225759
CP027477.1\|AVX86818.1\|41641_42670_+\|DUF2914-domain-containing-protein	unknown	unknown	gnl\|CDD\|378567
CP027477.1\|AVX86825.1\|49765_50230_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370137
CP027477.1\|AVX86806.1\|26921_28490_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
CP027477.1\|AVX86817.1\|40060_41452_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
CP027477.1\|AVX86824.1\|47733_49065_-\|glutamate/aspartate:proton-symporter-GltP	unknown	unknown	gnl\|CDD\|183075
CP027477.1\|AVX86821.1\|44674_45613_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
CP027477.1\|AVX86807.1\|28694_29615_-\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
CP027477.1\|AVX86814.1\|35710_37018_+\|citrate-transporter	unknown	unknown	gnl\|CDD\|225407
CP027477.1\|AVX86811.1\|33020_33347_+\|4,5-dioxygenase	unknown	unknown	gnl\|CDD\|378079
CP027477.1\|AVX86810.1\|32271_32937_-\|NADH-flavin-reductase	unknown	unknown	gnl\|CDD\|225462
CP027477.1\|AVX86816.1\|38235_39894_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224202
CP027477.1\|AVX86820.1\|43869_44673_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224052
CP027477.1\|AVX86823.1\|46317_47547_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225336
CP027477.1\|AVX86812.1\|33760_34285_-\|hypothetical-protein	unknown	unknown	unknown
CP027477.1\|AVX86815.1\|37088_37856_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223930
CP027477.1\|AVX86813.1\|34281_35295_-\|ATPase	unknown	unknown	gnl\|CDD\|379114

Protein	Function_ID	Function_description	E-value
CP027477.1\|AVX86819.1\|42724_43873_+\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	3.63085e-87
CP027477.1\|AVX86809.1\|31259_32210_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|188320	TIGR03418, chol_sulf_TF, putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.	1.66787e-160
CP027477.1\|AVX86808.1\|29630_31145_-\|choline-sulfatase	gnl\|CDD\|274570	TIGR03417, chol_sulfatase, choline-sulfatase.	0
CP027477.1\|AVX86822.1\|45609_46233_+\|ABC-transporter	gnl\|CDD\|225759	COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only].	2.18266e-41
CP027477.1\|AVX86818.1\|41641_42670_+\|DUF2914-domain-containing-protein	gnl\|CDD\|378567	pfam11141, DUF2914, Protein of unknown function (DUF2914). This bacterial family of proteins has no known function.	1.12864e-25
CP027477.1\|AVX86825.1\|49765_50230_-\|hypothetical-protein	gnl\|CDD\|370137	pfam08816, Ivy, Inhibitor of vertebrate lysozyme (Ivy). This bacterial family is a strong inhibitor of vertebrate lysozyme.	1.66299e-56
CP027477.1\|AVX86806.1\|26921_28490_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.59385e-116
CP027477.1\|AVX86817.1\|40060_41452_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.35189e-41
CP027477.1\|AVX86824.1\|47733_49065_-\|glutamate/aspartate:proton-symporter-GltP	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	0
CP027477.1\|AVX86821.1\|44674_45613_+\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	3.71819e-45
CP027477.1\|AVX86807.1\|28694_29615_-\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	6.41772e-167
CP027477.1\|AVX86814.1\|35710_37018_+\|citrate-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	0
CP027477.1\|AVX86811.1\|33020_33347_+\|4,5-dioxygenase	gnl\|CDD\|378079	pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family. This family of proteins are related to a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.	1.75326e-49
CP027477.1\|AVX86810.1\|32271_32937_-\|NADH-flavin-reductase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	5.01245e-11
CP027477.1\|AVX86816.1\|38235_39894_+\|hypothetical-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	7.90861e-174
CP027477.1\|AVX86820.1\|43869_44673_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	1.64964e-134
CP027477.1\|AVX86823.1\|46317_47547_-\|hypothetical-protein	gnl\|CDD\|225336	COG2715, SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only].	8.74166e-86
CP027477.1\|AVX86815.1\|37088_37856_+\|hypothetical-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	9.00706e-85
CP027477.1\|AVX86813.1\|34281_35295_-\|ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	4.09812e-16

>CP027477.1|AVX86815.1|37088_37856_+|hypothetical-protein
MDWLTNPEIWVAFFTLTALEIVLGIDNIIMISILVSRMPKHMQQRTRIFGLGLAMITRILLLLSITWVMRLTADLFVVFGQGISGRDLILFFGGLFLLWKSSQEMYHALEGEDESGDEPSGKGGNFLYTIIQIAIIDIVFSLDSVITAVGMVSHVPVMVAAIVVAVLVMMAASGKISEFIDKHPSLKMLALSFLLVVGTVLIAESFDVHVPKGYVYFAMAFSLAVEAINIKMRTAIARKKKQQDPVKLRKDIPGQ
>CP027477.1|AVX86814.1|35710_37018_+|citrate-transporter
MLTFLGFAMVITFMFLIMTKRLSALIALIIIPILFALFGGFAPKIGPMMLEGITKLAPTGVMLMFAILYFALMIDSGLFDPAVRKILKLVKGDPLKVSVGTAVLALVVSLDGDGATTYMICVAAMLPLYSRIGMSPRIMAGLIILAGGVMNMTPWGGPTARAASALHVDPSDIFVPMIPAMAAGVVAILIIAYFYGKRERARLGELHLIGDEIDHSEISVSQFPDARRPKLIWFNGLLTLALMCTLIAGLLPLPVLFMVAFSIAMIVNYPCLQMQKDRVAAHAGSVLSVVSLIFAAGIFTGILSGTGMVDAMSKSLLAVIPDFLGPYLAVITALVSMPFTFFMSNDAFYYGVLPVLSEAASHYGITAVEMARASIVGQPVHLLSPLVPSTYLLVALAGIEFGDHQRFTLKWAVLVCLCILVAALLLGTFPLFSTM
>CP027477.1|AVX86813.1|34281_35295_-|ATPase
MLNSVELDNFGPLQKIRWGKLSNLNLIIGANSSGKTFLLKALYCTMRTLEEYQRGNEQRSAAEILADKLYWTFQADKIGDLVTKSADGPLMCKVNVDSRAFRYGFGKDTTKNIATLENHVPPRGSNSIFLPPKEVLSLQHIILKSRDIDKDFGFDDTYYDLAKALRLLPTKGKNHAHFAKARENLEEMFGGKVEFDSSTNRWQFKKGNQKFQIGSTAEGIKKIAILDTLLGNRFLTKDSMVFIDEPESALHPVAITRLVDIIVSLAASGIQFFIASHSYFVIKALYLAAQKQNMSIPVLSSIGGEWIGDDLLKGMPDNPIVDESIRLYEEEVELALG
>CP027477.1|AVX86812.1|33760_34285_-|hypothetical-protein
MTISIEESGMIFGPFSEDQLFPIENSPLSKKIGDGIKVAEFVLLRDLQDKPQEVWFVEAKSSAPRQTEVFVEEIRQKFTNSVQLTLAACLRRHPHSEEHLPAGFLNLDLANCAIKCILVINQFPKEWMVGLRDALNKAMNSLAKTLGLKPGSVVVINDEMARARNLISNQEGRR
>CP027477.1|AVX86811.1|33020_33347_+|4,5-dioxygenase
MPAIKGYHAHVYFDADTIDQARALCEQAAQLFPLKMGRVHERPVGPHPDWSCQLAFGPQMIGEVLPWLALNRKGLVVFLHPDTGDDLLDHTEHAIWMGAMRPLDLSVF
>CP027477.1|AVX86810.1|32271_32937_-|NADH-flavin-reductase
MKNAETPTVKVVLYGAMASLGGALMAELLRRQHEVITILDDLNVLAPRPGLRTKSGDLFDAERVKQSVAGSSAVICLLDAPGLPFSSDHVERSVVLGPVEQVLAVDALVDGLQAANVSRLFLVGNFAVLDEPELDDGLQRHAAEEIREALQSSPLQWTLVNAPHGVAGLTIEHFSQVGGNLEPGLAEPLERLNRVAVGIADELQLNLHVGQHVNFVATSDT
>CP027477.1|AVX86809.1|31259_32210_+|LysR-family-transcriptional-regulator
MYEALGNLSLDLLRAFEAAARHRSFTAAAVELGTTQPAISQQIKRLEEQLGARLFDRIYRGIELTEGGAILFEQVQLGLQNIDAGLSAISTQQQHEVLQVATDFAFAAYWLMPRLHRFHEANPNVDVSLVTSERNHNMLRTDIDVAVLFGDGRFKQGESHWLFSEEVFPVCSPQLLKERALPLPAQTLLEFPLLHLRGENSSNWFDWSGLFRELGITTPPAPGQLRFDNYTLLIQAAIGGQGVAIGWRHLVDNLLTQGLLCRPIAETTLSRLGYYVVLPQRKRRGALIQQFVDWLMAEQASSAESLTGLGLPSIAV
>CP027477.1|AVX86808.1|29630_31145_-|choline-sulfatase
MKRKNILFIMADQMAAPMLPIYGPSPIKLPNLSRLAAQGVVFDAAYCNSPLCAPSRFTLVSGQLPSKIGAYDNAADFPADIPTYAHYLRRLGYRTALSGKMHFCGPDQLHGYEERLTSDIYPADYGWAVNWDEPDVRPSWYHNMSSVLQAGPCVRTNQLDFDEEVVFKAQQYLFDHIREDGDQPFCLTVSMTHPHDPYTIPKAFWDLYDDADIPLPTTPDPHSLDPHSQRLLKVYDLWDKPLPVDKIRDARRAYFGACSYIDANVGKLLKTLEDCGLMDDTVIVFSGDHGDMLGEKGLWYKMHWFEMAARVPLLISAPGQFKSGRVSSAVSTADLLPTFVELAGGSLEPNLPLDGRSLLTHLQGQGGHDEVFGEYMAEGTVSPLMMIRRGAYKFIYSESDPCLLFDVHNDPRELEELSQSPQHRQLFDDFLAEARAKWDMPAIHREVLASQRRRRFVADALTIGKLKSWDHQPLVDASQQYMRNHIDLDDLERKARYPQPCQNQ
>CP027477.1|AVX86807.1|28694_29615_-|choline-ABC-transporter-substrate-binding-protein
MRKLSTALTIGLLALGSASAFAEQSCDTVKMADPGWSDIAATNAITGFLLDGMGYKAKVDTLAVPITFGGLKDGQVDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLDGTEFTLAVPDYVWDAGVHNFADLNQYADKFDKKIYGIGSGAPANISLQEIIKKNDFDLGQWKLIESSEQAMLAEVSRAVKKQKFVTFLGWTPHPMNVQLKMHYLKGGEKYFGDTGSVYTLTRKGYAEACPNVGKLLTNLSFTQDMENSIMAEVVNKKVSNADAVKAWIKANPAVLDKWLEGVKTVDGKDALPAVKAKL
>CP027477.1|AVX86806.1|26921_28490_-|SulP-family-inorganic-anion-transporter
MALPSRHSLFPFLTWLPRQTRASVGRDLVVGLSGAILALPQSIAYALIAGLPPEYGLYAAIIPVLIACLWGSSWHLICGPTAAISIVLYASVSPLAVPASQDYITLILLLTFLAGIFQWLLGLLRFGALVNFVSHSVVLGFTLGAAVVIAIGQLPNLLGLDLPAKATALASLMDLLNHLRAVDKPSLLLGLATVAVGVVLKQLLPRWPTLLITLVLASLLVWLWPSMFGHVHRVSAFVGRLPPFSGLPLDLDLILRLLPSAVAVGMLGLVTSLSIARSIAARSQQLLDANQEVRAQGLSNIVGAFFSGSLSAGSFTRSGLSYEAGACSPLAGVFSAIWVALFAIFGAGLISHIPIPAMAGSILLIAWGLVDHRGIRSLLRVSRAEFVVMALTCLATLLLELQTAIYAGVLASLFFYLKRTSQPRVQHWREGEEDVLRVGGSIFFGASHYLQVRLQRLHGTRVVIEAQQINFIDYSGVEMLHQEARRLLRQDRSLTLRRARPQVVEELRKLEGPEKCPIRFED
>CP027477.1|AVX86816.1|38235_39894_+|hypothetical-protein
MLTLLNLLSAVALLIWGTHIVRTGILRVYGTNLRHVIGQNMSKRWLAFVAGIVVTAMVQSSNATAMLVTSFVGQGLMALTPALATMLGADVGTALMARVLTFDLSWLSPLLIFLGVIFFLSRKQTRLGQMGRVSIGLGLIILALQLIVEAAAPITHAQGVKVIFASLTGDILLDALVGALFAMISYSSLAAVLLTATLAGASVISLPVAIGLVIGANIGSGVLAFMSTSMQNAAGRQVALGSLLYKLIGLLLIIPVLDPLVHWMDGLDFSPQEMVIGFHLLYNTARCLILLPSVAPMARLCAWLLPERPEVNGTAKPRHLDLTALSTPSLALANAARETLRMGDLIDNMLDAMLDVLRGKQTAVTQEMRRLTDDVEALYSAIKLYLAQMPREDLGEQDSRRWAETIELAINLKLASDLIERMLRKVQQQKTSQRRSFSEEGLEDLAGLHQQLIANLRLGLSVFLSGDKESARQLLREKRRFRAQERRLAHAHVSRLQRKIVQSLETSSLHLELIADMKRLNSLFCSSAYVVLETADTGALEADDIADITHSP
>CP027477.1|AVX86817.1|40060_41452_+|insulinase-family-protein
MRCLLFACLLLGSLPAFAVDRFQVEGYALPNGLQLLLKPGTERGHVAIRLVVGVGLDDFDCDEKELPHLLEHLLFSGVDATGEGGLEERMQALGGEWNAFTSNADTTFVIEAPAKNQRKVLDLLLGLLTQTRIDDNAINAAKRVVEREDGGHYTRLQRFLDRQDLGHTASNQLAVELGLKCPQRAEVGHLTQQQLEKVRKTWYAPNNMTLIVVGELDKLLPAYLERTWGALEAVDPAEHRELPDIRTSAAHERTLTRGFIGDSAKLHWLVPEPMLDDQYDETFDILKDYLDWALYRQIRLNHGLSYGPWAEREVFGGVGFMSLNADVDRDDLVEAKQVLEDLKADLLKNGLDPDTFARIKQAAIAHQAWAVQGNSAMADYYWSALGDYEDGRFANPARELQGVTLETANKAMRELLLQPGYLRIEKPLLSDDEVLWLIAGGLGVLLLILIGWRLHHRRKPVEH
>CP027477.1|AVX86818.1|41641_42670_+|DUF2914-domain-containing-protein
MQKIPLLIQRILELMKRYPGVIALGGFISGVGSFILVDRQQGLASWITIIMLLSWIWLMLENTLTGLFTRIFKREIPQPLLRYATQMIHQESLFFVLPFFFITTTWNSGQLIFTGLLCIAALISIVDPLYYKWLAPRRWAFLALHTLTLFAALLTALPVIMHLTTAQSFKWALGTAVVLSFPSLASIFPIRTVRNALAILCITVGIGAVGWTLRSWVPPATLWMTDVAISTQLQDRTPGASLDEVSAEQIRNGGLYAYTAINAPRGLDERIYHVWQFNGQEVDRIALDIHGGRKEGYRAWTHKQNFPGNPAGKWQVRVLTEDGQVIGVLRFKVTDSTAIKEK
>CP027477.1|AVX86819.1|42724_43873_+|ABC-transporter-permease
MISSSMSGNAQLDTSISPARLRVSGDWTLAHYADLKHLTEQLTGQYDANTVVDLNSLGALDTAGASLLVELLGSERLGRSAEHPDCTISQADRALLQTVYRSLTDFCVPIKEPEVSVSVQLLTRIGRAVEAVWQDTLQVLGFIGLILETIARSLFRPKRWRITPVVAHIEQTGLDAAPIVALLTFLVGAVVAFLGATVLASFGATIFTVDLVGFSFLREFGVLLTAILMAGRTASAFTAQIGSMKANEEIDAIRTLGLDPMELLVVPRVLAMLVALPMLTFLAMLCGIIGGGVVCAVSLGISPAMFLSLLQSDIGIQHFLVGLVKAPVFAFLIATIGCLEGFKVSGSAESVGAHTTSAVVQSIFVVIVLDAVAALFFMEMGW
>CP027477.1|AVX86820.1|43869_44673_+|ABC-transporter-ATP-binding-protein
MSRLPRAPSEAVIEVRGLCNRFGSQSVHENLDLDLYKGEILAVVGGSGSGKSVLLRSIVGLRRPSEGNVKVFGQNLPSLSEHERSLVERRFGVLFQKGALFSSLTVTENVALPLIEHAGLSRNDAEHLAAVKLALAGLPLSAADKYPASLSGGMIKRAALARALALDPDILFLDEPTAGLDPIGAAQFDQLILTLRDALGLSVFLVTHDLDTLYTITDRVAVLAQKKVLVAGPIDVVSETDDAWIHEYFHGPRGRSALDAAKLLNEV
>CP027477.1|AVX86821.1|44674_45613_+|MCE-family-protein
METRAHHVLIGLFAVIVVAGALLFGLWLAKSSVDSEFKDYEIVFNEAVSGLSKGSPVQYSGIKVGDVVSLRLDPKDPRRVLARIRLGGDTPVKEDTQAKLALAGITGTSIIQLSGGTPESPKLRGHDGELPTIVAAPSPISRLLNDSNDLMTGVTALLNNANQMFSPENVERVSNTLAHLEQTTGSINDQRGDLRQAMQQLASVGKQAGSMLEQTSALMRNANGLLNDQGKQALGSAEQAMKSLEQSSATINGLLSKNQNSLDNGMQGLNGLAPAIRELRETLTSLRGISQRLEANPSGYLLGSDKNKEFTP
>CP027477.1|AVX86822.1|45609_46233_+|ABC-transporter
MKLTHFAFLASFTLLSACSILPKAEPSDVYRLPAAQAPASASSAATQHWSLRLNKLQASEALNRPNIAVIPQGDVISSYKASRWSDPAPVLVRNRLLDGFARDGRVTLLSTDDSNFAADLELGGSLQAFQTEYQGNQASVVVRVDALLVRGYDQKILASRRFEERQPLNDVQVPAVVAGFGQASDRLTAKVVAWAVQQGQQLAPVKP
>CP027477.1|AVX86823.1|46317_47547_-|hypothetical-protein
MLNGLWLGFFVVAAISALVQWLVGGNAGIFAAMVESIFAMAKLSVEVMVLLFGTLTLWLGFLRIAEKAGIVEWLAKVLGPLFLRLMPEVPAGHPALGLITLNFAANGLGLDNAATPIGLKAMKALQELNPSATIASNAQILFLVLNASSLTLLPVTIFMYRAQQGAPDPTLVFLPILLATSCSTIVGFLSVAFMQRLRIWDPVVLAYLIPGALILGGFMALLATMSATALAGLSSILGNLTLFGLIMLFLVIGALRKVKVYEAFVEGAKEGFDVARNLLPYLVAMLCAIGVLRASGALDFGLDGIRHLVQWAGWDTRFVDALPTAMVKPFSGSAARAMLIETMKTSGVDSFPALVAATIQGSTETTFYVLAVYFGAVGIQRARHAVGCALLAELAGVLGAIGVCYWFFG
>CP027477.1|AVX86824.1|47733_49065_-|glutamate/aspartate:proton-symporter-GltP
MKKAKLSLAWQILIGLVLGIAIGALLNHFSAEKAWWISNVLQPAGDIFIRLIKMIVIPIVISSLIVGIAGVGDAKKLGRIGLKTIIYFEVVTTIAIIVGLLLANLFHPGAGIDMSTLGTVDISKYQATAAEVQHEHAFIETILNLIPSNIFAAMARGEMLPIIFFSVLFGLGLSSLQSDLREPLVKMFQGVSESMFKVTHMIMNYAPIGVFALIAVTVANFGFASLLPLAKLVILVYVAIAFFAFVVLGLIAKLFGFSVIKLMRIFKDELVLAYSTASSETVLPRVIEKMEAYGAPKAICSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSISQQLLLVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRIMDMARTALNVIGNALAVLVIARWEGMYDDAKGQRYWNSLPHWRSKEKLPAGEISKN
>CP027477.1|AVX86825.1|49765_50230_-|hypothetical-protein
MIALKTLAAALLLGGSAMAIAANDGQARVNELLSSDPQYRETWQGVVKHEERLPEWVMNLSGTPEQQMNAVTEDGDKYLVGPLCESADKCLNHRLIVAFSFDKKDAYAMLVDVPEGLPADKSPTRHATYRFLGKPNQGMQSLLMETLKKDPNWY

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Crispr_ID: CP027477_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027477_2

2080813-2080908

Orphan

Consensus_repeat	Method
CGACCAATTTCTAACTGAAAACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027477_2

>merge|CP027477|2|2080813-2080908|CRISPRCasFinder
CGACCAATTTCTAACTGAAAACACCCGGTCCCACTGTGGGAGCTGGCTTGCCAGTGATGGCTGCCAGCCAGCCGACCAATTTCTAACTGAAAACAC

>CP027477|2|2|2080813-2080908|CRISPRCasFinder
CGACCAATTTCTAACTGAAAACAC	CCGGTCCCACTGTGGGAGCTGGCTTGCCAGTGATGGCTGCCAGCCAGC
CGACCAATTTCTAACTGAAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP027477.1\|AVX88552.1\|2086677_2087958_-\|aminotransferase	unknown	unknown	gnl\|CDD\|223594
CP027477.1\|AVX88545.1\|2049840_2050974_-\|cupin	unknown	unknown	gnl\|CDD\|372651
CP027477.1\|AVX88542.1\|2045717_2046518_-\|sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|187616
CP027477.1\|AVX88556.1\|2092859_2094833_-\|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB	unknown	unknown	gnl\|CDD\|182528
CP027477.1\|AVX88539.1\|2042466_2043105_-\|NAD-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|349379
CP027477.1\|AVX88543.1\|2046605_2048153_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239218
CP027477.1\|AVX88558.1\|2096328_2096811_+\|RNA-polymerase-subunit-sigma	unknown	unknown	gnl\|CDD\|171560
CP027477.1\|AVX88540.1\|2043117_2043507_-\|hypothetical-protein	unknown	unknown	unknown
CP027477.1\|AVX88548.1\|2079454_2080414_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
CP027477.1\|AVX88555.1\|2091460_2092852_-\|RND-transporter	unknown	unknown	gnl\|CDD\|273830
CP027477.1\|AVX88549.1\|2081355_2083818_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|236643
CP027477.1\|AVX88544.1\|2048488_2049661_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
CP027477.1\|AVX88557.1\|2094833_2096006_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183211
CP027477.1\|AVX88550.1\|2083935_2085585_-\|cyclic-peptide-transporter	unknown	unknown	gnl\|CDD\|130262
CP027477.1\|AVX88551.1\|2085731_2086640_-\|chromophore-maturation-protein-PvdO	unknown	unknown	gnl\|CDD\|335469
CP027477.1\|AVX88553.1\|2087954_2089325_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
CP027477.1\|AVX88541.1\|2043898_2045725_-\|glucoamylase	unknown	unknown	gnl\|CDD\|225922
CP027477.1\|AVX88554.1\|2089645_2091265_+\|PvdJ/PvdD/PvdP-like-protein	unknown	unknown	unknown
CP027477.1\|AVX88547.1\|2052070_2064391_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237054
CP027477.1\|AVX88546.1\|2051106_2051841_+\|thioesterase	unknown	unknown	gnl\|CDD\|225749

Protein	Function_ID	Function_description	E-value
CP027477.1\|AVX88552.1\|2086677_2087958_-\|aminotransferase	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	2.14247e-58
CP027477.1\|AVX88545.1\|2049840_2050974_-\|cupin	gnl\|CDD\|372651	pfam13621, Cupin_8, Cupin-like domain. This cupin like domain shares similarity to the JmjC domain.	5.73101e-38
CP027477.1\|AVX88542.1\|2045717_2046518_-\|sugar-dehydrogenase	gnl\|CDD\|187616	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs. GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	5.88764e-130
CP027477.1\|AVX88556.1\|2092859_2094833_-\|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP027477.1\|AVX88539.1\|2042466_2043105_-\|NAD-dependent-DNA-ligase	gnl\|CDD\|349379	cd17748, BRCT_DNA_ligase_like, BRCT domain of bacterial NAD-dependent DNA ligase (LigA) and similar proteins. LigA, also called NAD(+)-dependent polydeoxyribonucleotide synthase, catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. The Trp-X-X-X-Cys/Ser signature motif of the BRCT family is not conserved in this family.	2.09446e-18
CP027477.1\|AVX88543.1\|2046605_2048153_-\|hypothetical-protein	gnl\|CDD\|239218	cd02885, IPP_Isomerase, Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mammals and plants. Despite sequence variations (mainly at the N-terminus), the core structure is highly conserved.	8.8624e-70
CP027477.1\|AVX88558.1\|2096328_2096811_+\|RNA-polymerase-subunit-sigma	gnl\|CDD\|171560	PRK12527, PRK12527, RNA polymerase sigma factor; Reviewed.	1.95345e-100
CP027477.1\|AVX88548.1\|2079454_2080414_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	9.43815e-81
CP027477.1\|AVX88549.1\|2081355_2083818_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
CP027477.1\|AVX88544.1\|2048488_2049661_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.61014e-17
CP027477.1\|AVX88557.1\|2094833_2096006_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	8.01433e-82
CP027477.1\|AVX88550.1\|2083935_2085585_-\|cyclic-peptide-transporter	gnl\|CDD\|130262	TIGR01194, ATP-binding_protein_SyrD, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other].	0
CP027477.1\|AVX88551.1\|2085731_2086640_-\|chromophore-maturation-protein-PvdO	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	1.91084e-65
CP027477.1\|AVX88553.1\|2087954_2089325_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	6.6093e-80
CP027477.1\|AVX88541.1\|2043898_2045725_-\|glucoamylase	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	5.02178e-118
CP027477.1\|AVX88555.1\|2091460_2092852_-\|RND-transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	8.06227e-85
CP027477.1\|AVX88547.1\|2052070_2064391_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237054	PRK12316, PRK12316, peptide synthase; Provisional.	0
CP027477.1\|AVX88546.1\|2051106_2051841_+\|thioesterase	gnl\|CDD\|225749	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	4.78901e-83

>CP027477.1|AVX88548.1|2079454_2080414_+|alpha/beta-hydrolase
MSLNPDIAAFLQLVGNGRATGKRVGMHELSPTEAREQFDQSSLLMDAGGEELAVVDELQLPVRDGALLHARIYSNHPLQAGAGRPALLYFHGGGYVVGSLDSHDSLCRALASLADCVVLSVAYRLAPEHRFPTAADDARDAWDWLLASAADLGIDAARLAIAGDSVGGSLATVLAAQLTAAAVQPRLQVLIYPVADASRSTPSIERFAEGYLLEKASLQWFYAHYQRDASDRFDPRFSPLLGEVPADVAPVLMVLAECDPLHDEGVAYARHLQAAGVAVDLQVYSGMTHDFMRMGAIVDEAEEALGLIAGRLVEVFALA
>CP027477.1|AVX88547.1|2052070_2064391_+|non-ribosomal-peptide-synthetase
MNAEDSLKLARRFIGLPLEKRQMFLAALHKEGVDFARFPIPAGIEAEDRQALSYAQRRMWFLWQLDPQSGAYNLPGAVRLNGRLSLTALEQAFASLVERHETLRTVFQRQADDSLLQVPATAPLLINREDFSALSASGREQAVIDAAEQQSLLPFDLAVGPLLRVTLLKLAEQEHVLLLTLHHIVSDGWSMNVLIDEFIRCYDAFDAGQAPQLPPLPIQYSDYALWQRRWLEAGEQARQLDYWQAQLGDEHPVLELPLDHSRPAMPSYRGTRYEFAVDGQLAEQLRSTAQQHQVTLFMFLLGAFNALLHRYTGQTDLRVGVPIANRNRGEIEGLIGFFVNTQVLRTQLHGQTRVDELLRAIKETALGAQAHQDLPFEQLVEALKLERSLSHTPLFQVMYNHQPHVADIATLRTASGLQLDSLDWQSRTTQFDLTLDTWEQGGKLHAALTYASDLFAAPTIERMARHWLRLLTAMVADPSQRIGELPLLEADEQRTLVHDWNNVHAQYPSDTPIHQLIEAQVARTPQAPALLFGEQTLSYAELDARANRLAHLLREQGVQADSLVGICALRSVEMVVALLAILKAGGAYVPLDPEYPQERLAYMIEDSGISLLLTQQALLATLSTDGVNVITLDQPGLLDRYSDSRPDVSVDPLNLAYVIYTSGSTGKPKGAGNSHAALVNRLCWMQEAYALDASDSVLQKTPFSFDVSVWEFFWPLLTGARLVVAAPGAHRDPLQLIDSINRHGISTLHFVPSMLQAFIHEAGVESCSGLKRIVCSGEALPLDAQLQVFAKLPNASLYNLYGPTEAAIDVTHWTCVDEGADSVPIGRPIANLRTHVLDAELLPVPSGVAGELYLGGAGLARSYHQRPALTAERFVPCPFHDGARLYRTGDRVRQRADGVIEYLGRLDHQVKLRGLRIELGEIETRLMQHSLVREAVVLVQGGKHLVAYLVLEQAQANEQWQQEVKAWLLGSLPEFMVPTYLITLDKLPVTANGKLDRKALPQPDAAPQQAFVAPQDAMQKALAAIWEAVLGLHRVGLDDNFFELGGDSIISIQVVSRARQAGIRISPRDLFQYQTVRSLALVASHDHLSSVDQGPVTGDAVLGPIQQDFFSRAMPVREHWNQSLLLTPREALNAQWFDAALTHLINHHDALRLRFVEGSEGWQQSHGPLLTGAELWQRDAESAEQLQALCNEAQRSLDLQNGPLLRALLVTMADGSQRLALIIHHLAVDGVSWRVLLEDLQQAYEQLAAGGGIQLPAKTSAFQSWTARLAQDASRFDDQLSYWKAQHQGAEDLPCDRPDGSLHNLHGEKIEWRLDAERTRQLLQQAPAAYRTQVNDLLLTALARTISRWSQQPGTLIELEGHGREDLFDDIDLTRTVGWFTSLFAVNLTASEDLDGSIKAIKEQLRAVPDKGLGYGVLRHLAAPSVRAELAGLPQPRITFNYLGQFDRQFDEAALFVPAVETSGVAQDPSAPLGNWLTVEGQVYGGELSMSWGFSREMFDSATVQHLVDQYASELQALIEHCCTLPIAQATPSDFPLARVTQTQLDALPVPAGQLDDVYPLSPMQQGLLFHTLYEQAAGEYINQLRVDVQGLDPERFRAAWQATVAAQDILRSGFVWQGELAQPLQIVHKQVQLPFSIFDWRERDDQPAALAALADGERQQGFDLSHAPLLRLVLVQTAAEQWHLIYTHHHILMDGWSNSQLLGEVLQRYSGRTPAHGGGRYRDYIAWLQRQDAQLSQDFWGAQLAALQEPTRLARATTGGEGDSGHGDHYLTLDVPRTQALEAFARQQKVTVNTLVQAAWLLLLQRYTGHETVVFGATVAGRPADLPGIEQQVGLFINTLPVIGAPRPDQSVDQWLQAVQAQNLSLRDFEHTPLADIQRWAGQGGEALFDNILVFENYPVAQALSQAGQGLQFGDVGNLEQTHYALSVAVTLGQQLALHYSFDRSQFAGEVIEGISAHLLQLLEQFALSAERNLGEIALASADEHARQQAENQPQPYPVEIAVHQRIAALAAERPQRTAVIFNGQHFSYGEIEQRANQLAHALIARGVGAETRVGVALPRSEAVIVALLAVLKAGGAYVPLDTSYPRERLAYLIEDSGLALLLSDSSVSAQLPVGESVPLLELDRLDLRELPSTAPQVAVDPHNLAYVIYTSGSTGNPKGVSVAHGPLAMHCQAIGQRYEMRDSDCEFHFMSFAFDGAHERWLTSLTHGASLLIRDDTLWTPEQTYNAMIEHGVSVVAFPPVYLQQLAEHAERVGNPPKVRIYCFGGDAVPNASFERVKRALDPDYIINGYGPTETVVTPLIWKAGREEPCGAAYAPIGSRIGDRSAYVLDADLNLLPQGMAGELYLGGTGLARGYLNRPGLTAERFVADSFSANGGLLYRTGDLVRQRVDGTFDYLDRIDNQVKIRGFRIELGEVEAALQALDGVREAVVVAQEGSAGSGKRLVAYVVGDSARAEFTEDLRAQLKASLPAHMVPAYVLRLERMPLTPNGKLDRKNLPKPDVSQLQQTYVAPQSALEQQLAAIWQDVLKLEQVGVSDNFFELGGDSIISIQVVSRARQAGIRFSPKDLFQHQTIQALATVAQTGEAVQPIDQHAQTGETALLPIHQAFFAEAIPDRHHWNQSVMLKPTQALDAQVLEQALDALVVQHDSLRLDFVEQAAGWSAHYRDVATQAGETILWQVEVADLAALEALGNKAQRSLQLSGGSLIRAVLANLADGSQRLLLIVHHLVVDGVSWRILFEDLQNAYRQLLAGKPVQLPAKTSAVKAWAAALQDYATTPALQAELGFWQQQLQGASAALPYDRPQGGQQHDQALTLRRKLDQTLTRQLLQEAPAAYRTQVNDLLLTALARVLVRWTGDDNALVLLEGHGREDLFEHIDLTRTVGWFTSVFPARLAPAAELGASLKQIKEQLRAIPYKGIGFGALAHLGDEPTRTALQALPAPRLTFNYLGQFDGSFDAASDALFVPTSESGGAEVNLQGPLGNPLALNSKVFGGELDLSWTYSGAMFDTATIQRLADDYVQELTALIGHCCDSANRGVTPSDFPLAQLSQAQLDALVLEPQGIDDIYPLSPMQQGMLFHTLLEHGNGDYINQMRLDVDGVDPQRFRAAWQSAVDAHDILRSGFFWQGDLPQPVQVVQRQVEVPFSVLDWHDRTDLEAALQTLADEERALGLDLSCAPLMRLVLVRTAAERYHLIYTNHHILMDGWSSAQLLGEVLQHYSGEAVARGAGRYRDYIAWLQRQDGAAAQAYWRATLGNLQEPTRLANAIARPHAGLPSVGYGDHYQVLDAELSQRLGEFARAAKVTVNTVVQAAWLLLLQRYTGKDCVAFGATVAGRSAELPGAEAQIGLFINTLPVIAAPSAQQSVIAWLQAVQAQNLASREFEHTPLADIQRWAGQGGDALFDSLMVFENYPIGEALERGAPQGLRFGAVANQEQTNYPLTLLVNMGAQLSVHFSYQRDSFAAASVAQLGAHLQRLLSQMADGGERTLSELNLIEHRPPVNSDFATEQCIHQAIARQVAATPDALAVTFAHTQLSYAELDAQANRLAHKLLELGVGPEVRVGVAMPRSEQLLVALLAVLKAGGAYVPLDPDYPADRVAYMLEDSRARVLLTEQAVAATLSVPGDTQVLLMDQLSLSDYPSSAPQTSVAPDNLAYVIYTSGSTGKPKGVAIAHRNVMALIDWSAKVYRRDDIQGVLASTSVCFDLSVWELFVTLANGGSLIIARNALELPHLPARDQVRLINTVPSAIAALQRAGQIPPSVRIINLAGEPLKQALVEALYQQSTVEHVYDLYGPSEDTTYSTWTRRSAGGQARIGRALDYSASHLLDADLHAVPQGVSAELYLSGAGITRGYLGRAAMTAERFVPNPFVGSGERLYRTGDLIREREAGELEYMGRIDHQVKIRGFRIELGEIEARLLAQPTVSEAAVLAVDSDTGAQLVAYVVAPQLEMHDGDAQRQLREGLKTGLKSSLPDYMIPAHLLFLEQLPLTPNGKLDRKALPAVDASQMQAAYVAPHSELEQQVAAIWQQVLEVQRIGLNDHFFELGGHSLLAVNVVSRMALELGLTLTPQLLFQHPVLSDFVARLDTGGGAINEQKLSKLEALLDDMEEV
>CP027477.1|AVX88546.1|2051106_2051841_+|thioesterase
MNKLTLLCLPYSGASAMVYSRWRPKLPQWLQLQPVELPGRGARFDEPLHTDMRALAMQLAKELRPNLKAPYAVFGHSLGALLACEIAHALRALGCPEPVALFASGTAAPTMRADYDRGFAEPKTDAELIDQLRTLNGTSEEVLANAELMSLTLPILRADFLLCGKFEPLQRPLLNCPVHVLGGKADRATTEQLIGWSKETRGSFSVDMLAGGHFFIHEHEAKVLKVIKNQLEGHHRRHNLAITA
>CP027477.1|AVX88545.1|2049840_2050974_-|cupin
MDLQSILGKLFANAGAVGIEGVFQFVFGPQQAYWSEVKASSRTAPGRHPSPDVTIEVAESDFLGIMGGRVNVEELFASGRLKIGGNMGLATLLPQIIEHAMHGGAVAQKVDMNKRYPTPPRFSEQLTAGLPVQTRIERHARDELSVSEFKSRYLPNGIPVVISNALQDWPLFKLSREESLVHFAELQGITRHGDYVKKTFSTERDFRSTSMAEFIASLDQPAVKRADGEPPAYMGNNILPAQLLQQIKYPPYFDASLFIPPRIWIGPKGTLTPLHRDDTDNLFAQVWGQKQFTLAAPHHREALGTWSTAPKGGLDGCDFNPDAPDYERFPAARDVTFLRVTLEAGDLLFLPEGWFHQVESVSTSLSVNFWVNSGRGW
>CP027477.1|AVX88544.1|2048488_2049661_+|MFS-transporter
MANPYRELFTAPGARAFVLAGMIARMPISMTGIGVITMLSQLKGGYALAGAVAATFALATAFCAPQVSRLVDRYGQGNVLPLSALIGGGALLMLLLCTRLQAPTWTLFIFAALAGCMPSMSAMVRARWTEIYRGQPQLQTAYALESVLDEVCFIVGPPLSVGLCVVAFPEAGPLAALLALAIGVTAFVAQRSTEPAVHPQESQHQGSIIRSTDVQWLLALMLAMGVIVGVVDVVSVAFAQQQGQPAAASIVLSVYAIGSCLAGIAFGAMRSKLPLPRLFLYGGVATAVTTLPLLLASNIVSLSLAVFVAGLFFSPTLIVAMALIERIVPPAKLTEGLTWLVTGLSIGVAIGAAGSGALVDAFGARSGFWLAIAAGAVVLASAFQSYRHLK
>CP027477.1|AVX88543.1|2046605_2048153_-|hypothetical-protein
MEEQLILVSPKDRQTGVASKMEVHHQGLRHRAFSILLFDSQGRMLMQQRALGKYHSGGLWTNTCCGHPRPGERTAAAALRRLQEEMGTTCKLQKVASMLYYEQVSNQLIEHEFDHVFAGLSQLDPVANPEEVESWEWLSLEEITERIEQAPEQFTIWFRRMFEQFGTGGVRQWFEAARDASAARSMPDAFGKNARSHWAVPPLYCPAPFRIDTALAEAVEDRLMPWVKEVGIFAGQLEKVRAMGFGRFAMLCHTDTHDPDRLLLSAQCIAALFAVDDYYCDDERTGSEPRLVGPRLSLALAALEPAHLPFRFRCGLDQALNSDPVLVALRAYMDRVQAFASSVQVARVRHEIIAMFVTMTAEAAWRLEGLTPPIWEYLAQRQTNSFLPCMSLIDVIGGYELPAHIYSAPAVRRVTTLAASATIVANDLYSAHKENQAAIGDFNLPLLLAREHNCTPRQAMIKCAHVHDEIVHLYEAAEQAVLPDASPLLQRFLTGIKSWVSGSLEWHRHSGRYHV
>CP027477.1|AVX88542.1|2045717_2046518_-|sugar-dehydrogenase
MQISLARQVALVTGASSGIGHAAAKALAAAGAAVVINYHRQAEPAQALAQQIIADGGQALAIGADISKEDEVERLFAETLEAFGALDILVANSGLQKDAAAVDMTLEDWNTVIGVNLTGQFLCARAALRIFNRQGVREGVSRAAGKIIHMSSVHQRIPWAGHVNYAASKGGVDQLMQTLAQEVSPQRIRINGIAPGAIRTAINQDATEGAAGEKLLELIPYGRIGDVEDIANAVVFLASDAADYIVGTTLFIDGGMSLYPEFRGNG
>CP027477.1|AVX88541.1|2043898_2045725_-|glucoamylase
MAEHHPERQSPIDAHGIIGDLRSAALVNDRGSVDFFCWPEFDSPSIFCSLLDTPEAGIFQLAPDLPDARREQIYLPDTNVLQTRWLSEQAVVEITDLLPIGDSVDDLPLLMRRVRVVSGEATFHMRCAVRHDYARANTRAQMDQQSVIFSAEGQPSLRLVADQALHIDGESAVASFSLKQDQHAEFVLGGADDPRFKDDGAKMCLERTLKFWRDWIGQSNYRGRWREMVNRSALALKLLTSRKHGAILAAATFGLPETPGGERNWDYRYTWIRDASFTVYAFMRLGFVDEANAYMGWLRGRVSDCQGHSTKLNILYAIDGRQQLPETELSHLCGHGGAQPVRIGNGAYDQIQLDIFGELMDAVYLVNKYGDAISHQGWNHVREVVDQVCETWQTTDVGIWEMRGEQHHFLHSRLMCWVALDRAIRLASKRSLPAPFVQWDQTRQAIYADIWDNFWNEERGHFVQYKGGTALDGSMLLMPLVRFVSAKDPRWLSTLEAIEKTLVRDGMVYRYRNDDANIDGLTGTEGAFAACSFWYVECLARAGQVEKAHLEFEQLLRYANPLGLYAEEFDSHGRHLGNTPQALTHLALISAASFLDRRLSGEKGEWQP
>CP027477.1|AVX88540.1|2043117_2043507_-|hypothetical-protein
MTQHVHRPIATPLRTGLTRTQLWEAADKGLIKCWEIGRQRASRFPDLAQQCLAGELPVLGWKGGVSRSLKKNEKYGSLKYLAQWQGLRGEDLDIDLSEERSMTCSRTKMRVTFTPDRTKYFNQVAEAEA
>CP027477.1|AVX88539.1|2042466_2043105_-|NAD-dependent-DNA-ligase
MVDLHQEFKSSVFFHQARIERRSVDALIGIAAGLAADCTINQQEAEFLRTWIETHLVHLDDPVVNILYRRLADMLSDGVLDADESAELLEMLHQFTGLPTAPTQTTKFAAPTSLPLDNPAPQLCLVDRVFLFTGVMAYGPRKECESQILERGGLIGGSVSKKIHYLVVGSIGNDQWLHSSYGTKIKKAVELRDSGVPIAIISEDHWQKVLFG
>CP027477.1|AVX88549.1|2081355_2083818_-|TonB-dependent-siderophore-receptor
MPAPHGLHPLAKALLIRRSFRCTLPAFCAMALTVPMAGQAQAAAVAINIPAQSLGSALQEFGRQTNLQVLYSPDEVSGLRSSTVSGNLEPTAAIAQLLQGTNIAYSVEGNNVALRSRSSGGASLDLAPTSISATAESAWGPVDGIVAKRSATGSKTDSSLKEIPQTINVVTQDEIKMRGSKTVTEALQYTPGMTGGGFSDRVKIFDEPTSRGFSPTPLYLDGLHMPYGGGSTGGSLQIDPYTLERVEVLKGPASVLYGQNQPGGIVNMVSKRPTATPLHEVKLGGGSYDRKYGAFDLGGPIDDQGEFLYRLTGVVNDSGSAIDYASQNRMLLAPSLTWLPNDQTTITVFGQYQKDHDVPEAQGLPANGTVHRSQAGRISRSLFLGEPDVNKYHREQFVVGYEIAHELNDVWTLKQNARYADINDQYVAPLHGYSFPTNPVTGLNDGSYQSRYAVDWSQHNKVYGIDNIAQAKFNTADVEHTVLLGVDYYHYNSKFLGLYDRTAPGLDLYNPVYGSQINFRQPYKWDNTITQTGLYAQDQLRWNQWFLTLGGRYDFAETDNKQPLSGGHSNQKDEKFTGRAGLGYEFDNGITPYVSYAESFLPQTGTDMSGGAFEPTTGKQYEVGVKYEPKSIDGFIQLSAYQIDQDNMLTTDLNNPGFSTQSGSVRSRGIELEGKVNVTRNLRVLAAVSRNQTKWEKDNDGREGRTLAMRPPLTASAWVNYDFDISTALAGFGMGLGARYVRSSYGSDYESDSFQIPSYTVYDAMVSYDLEKSPLHVKGVKLQANLQNLTDEKYVAACNGTLDCYYGEGRTMTADVTYNW
>CP027477.1|AVX88550.1|2083935_2085585_-|cyclic-peptide-transporter
MSKPTRGVINELFALLKPFRLIVSVSILLGMVGGLSVTALLATINNVLHAEGALTSTMVAVFAGLCLLALTSSIFSDIGTNFVGQHIIATLRKELGEKVLSAPIEQIERYRSHRLIPVLTHDVDTISDFAFAFAPLAISLTVTLGCMGYLAMLSWPMFLMMAVAILIGTVIQYIARGRGMQGFLKARDYEDELQKHYHAVAEGAKELRIHRPRRHRMFVSGIEGTADKICDTQVRSVNIFVVAKTLGSMLFFVVIGLALGLQSLWPSADKAVMSGFVLVLLYMKGPLEHIIGTLPIVSRAQIAFRRIADLSEQFSSPEPHLLLSDQGHQKTPVHSLELTDVSYSFPTVEGAKPFRLGPVNLKIEQGDIIFIVGENGCGKTTLIKLLLGLYAPQQGEIHLNQQLVDASNRDDYRQLFTTIFADYYLFDDVVQGDTHIPEDANQYLERLEIAHKVSVRDGSFTTTDLSTGQRKRLALINAWLEERPVLVFDEWAADQDPTFRRIFYTELLPDLKRLGKTIIVISHDDRYFDVADQLVRMSAGKVVTELQPA
>CP027477.1|AVX88551.1|2085731_2086640_-|chromophore-maturation-protein-PvdO
MNSELRRFSLKALPALMLTALAAGLLPGAAQAATPPAPGKVFKDCKDCPEMVVLPTGTFTMGTPEDEVGREPDEGPMHPVTFAKPLAISRFQILRGEWDAYLKDSGYKMPDGDTRPGRACKAGIPDYQGSDPRKQYTDKHPAVCMDFPEVEAYVAWLSKKTGQPYRLVSESLREYAARAGSTGPFPFPFDEGKVYSIAKHANTYGAADGYNFTAPAGSFPANAFGVYDMHGNIYEWTADCYNENYVGAPSDGSAWLSGKCEVRRIRGNDWGEAPVFSRSGNRNATYTDTRGDWIGFRVARDL
>CP027477.1|AVX88552.1|2086677_2087958_-|aminotransferase
MSNRREFLKQAGILAAALPLGASLPNVAGAANAAPATGNKWTRLQQLFDQDPAYLHFSNFLITSHPKPVREAIERHRAALDKNPGLAMDWDLGVIEQREENVRVWAGRYLQADAKQIALTGSTTEGLAMIYGGVHVRPDQEILTTEHEHYATHTILALRSERDGTRVRKIRLFKDSYSASKAEILAAIDGAIRPETRVLGMCWVHSGSGMKLPIGEIGAIVDRHNRGRSDADRIVYVVDGVHGFGVDNLNFAQMNCDFFIAGTHKWMFGPRGTGIVCSRFAEVRYVTPIIPTFSEATAFSTTMTPGGYHSFEHRWALDEAFKLHLELGKAEVEARIHALNSYLKQRLQQRPQIELVTPLSPELSAGFTFFRVKGKDSDKIAAHLMANRVVADAVHRDVGPVIRTAPGLLNDEEQIDRLLAVLDQAL
>CP027477.1|AVX88553.1|2087954_2089325_-|membrane-dipeptidase
MTKPRSKKALFIGLPLALAISAGAGFAVWHHWFKDDLGYPAKVMKQADELHERMLSFDSHVSLTQNFGTDGHEADKDGDGQFDLAKANRGRLSGAALTIFGWPEMWNGPNAPHKPTPGFVDEARNQQEIRFKIISGMVRDYPNQVAIAYTPDDFRRLHGEGKFAIFISMLNAYPLGHDLNLLDLWTARGMRMFGFSYIGNNDWADSSRPLPFLNDSPDALDGLSDLGKQAVKRLNDLGVIIDVSQMSTKALEQVAQLSRTPLVASHSAPRAMVDIPRNLSDKEMQLIKNSGGVVQIVAFSQYLRPLTQQTQDKLNAMRKDFDLPPLPNLAMALMPGDPIIAAWSEQKFGQYASRLYAILEEEPKASLKDLGDAIDYAVRKIGIDHVGISSDFNEGGGVKGFENVGDIRNVTAELISRGYSEADIAKLWGGNFLRVWDQVEKAAKPALAAAPGTAQP
>CP027477.1|AVX88554.1|2089645_2091265_+|PvdJ/PvdD/PvdP-like-protein
MKISRRWFMAGLALTGAAVPAAYFGHREWTKPDPTITPGEASFDVADMAGQRLANALRGVWDIRFEGADAGLEGLQPKGLQVFLDIGQKGRGVCGFLDTSERLRSAETPRYRILGDLAKADAAKLSWRLIGADGQISYELEMILDEVWADFGNAGSGTLSGKALRLDRSLALPAQDNRFVAVKRLFPEARERTPLNPTLLAWLISPEHRLFHQLWHATRDKWHKLPEDKREALRGIGWQPGPRDKERDARGPRKDRNGSGVDFFFMHRHMLGTARSMQELPSWEFFPLPQPELIRDRVGFARYFDNHDGSALPPTWTAAGDDEFSQWVSDIKTAETYESNFQVWESQYRDPAYLARLTLGEFGSEVELGLHDWLHMRWASVPRDPSNGQPVPFARDPADFAARWYNAENDFLGDPFSSHVNPTFWHFHGWIDDRIEDWFRAHERFHPGEVTRLQVNGVPWFAPGRWVEVDDPWLGPITHGCSSTPGLQKGKTVEMDPETMKLALRITFITDEEKLAGLFRRVPQRPWYARNLKAKTSPA
>CP027477.1|AVX88555.1|2091460_2092852_-|RND-transporter
MKPRLSLLTVCLLLSACGSPVQRPDSGVQTPAAWQSPHSASVARNNPQWWTQFGSPELDRLIEQARVGSFDLAAAVARVRQAQAGTVIAGGSQLPEVKAGLNANRQKLLRGNGYSQLDANSSNKAVDYFDTNLSATYEIDFWGGKRASRDSAQFALQASEFDRATVELTLLSGVASTYAQTLSLREQSRIAELNLANAQSVLKLVQTRFDSGSATALELAQQKSLVAAQQWQLPRVQQQAQDALISLAALLGRPVQQLSATESFDHLQWPDIDAGVPSELLTHRPDIARAEAQLAAAEADVKVARAAMLPALTLTAQLGSGANQFDDLIRSPFYNLTAGLVAPIFNNGRLGAERDKAMARQQELLDTYRGAIINGFADVEKALNSIRRLDEQRLWQNEELNQAQTAFDIAQSRYQAGAEDLLTVLETQRTLYAAQDQHAQLRLSRVQASIALYKALGGGWQTL
>CP027477.1|AVX88556.1|2092859_2094833_-|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB
MQTPLIDLQDIRKSYGGGDAPEVHVLRGIDLSIHAGEFVAIVGASGSGKSTLMNILGCLDRPTSGEYRFAGENVAGLDSDELAWLRREAFGFVFQGYHLIPSGSAQENVEMPAIYAGTPAAERHVRAAALLDRLGLASRTGNRPHQLSGGQQQRVSIARALMNGGHIILADEPTGALDSHSGKEVMALLDELASQGHVVILITHDREVAARAKRIIEIRDGLIISDSARDNPDAQTSANPGALQAVDLRQRLAVGADATGAWKGELVDALHAAWRVMWINRFRTALTLLGIIIGVASVVVMLAVGEGSKRQVMAQMGAFGSNIIYLSGSAPNPRTPPGIITLDEVHALASLPQVQRIMPVNGAEAGVRYGNADHLSYVGGNDTNFPAIFNWPVVQGSYFTEADEQNAAAVAVIGHKVRSKLLKDVPNPIGQFILIENVPFQVVGVLAEKGASSGDSDSDNRIAIPYSAASVRLFGTRNPEYVAIAAADARKVKDTEHAIEQLMLRLHNGKKDFELTNNAAMIQAEARTQNTLSLMLGSIAAISLLVGGIGVMNIMLMTVRERTREIGIRMATGARQRDILRQFLTEAVMLSVVGGLAGIALALLVGGVLILSEVAVAFSLMAVLGAFGCALVTGVVFGFMPARKAARLDPVTALTSE
>CP027477.1|AVX88557.1|2094833_2096006_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKRPRPARRALLAALCLIPVVAFAAWQIMPPGRERFATVQVSRGDIESSVTALGTLQPRRYVDVGAQASGQIQKIHVEVGDMVKEGQLLVEIDPSTQKAKLDAGRFSIENLKAQLQEQRAQHELARQKYQRQQHLVAGGATREEDVQTARAELKATQARVDMFQAQIRQAEASLRSDQAELGYTRIYAPMAGTVVALDAREGQTLNAQQQTPLILRIAKLSPMTVWAEVSEADIGHVKPGMTAYFTTLSGGQRRWSSTVRQILPVPPKPLDQTSQGGGSPASTSKSGSARVVLYTVLLDVDNADNALMAEMTTQVFFVANQAKGVLTAPVAALQGSTTANLQTAQVVAANGDIQQREVRTGISDRLKVQIVDGLNEGDHLLIGPVDGSGG
>CP027477.1|AVX88558.1|2096328_2096811_+|RNA-polymerase-subunit-sigma
MLENYYRELVCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVIDDHRRNALRQVEPLEVLDSEERYFTPSPHGTLDHGQRLEMLQRALAELPPLCRDSFLLRKIEGLSHPQIAEQLGISKALVEKHIVNAMKHCRLRIKQWDAH

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Crispr_ID: CP027477_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027477_3

2460656-2460764

Orphan

Consensus_repeat	Method
AGGGTTTTGCATGGATCACAAAATCTGTGAACAACACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027477_3

>merge|CP027477|3|2460656-2460764|CRISPRCasFinder
AGGGTTTTGCATGGATCACAAAATCTGTGAACAACACAGAATACTGGGGTAGCTGGCAAGCCAGCCCCAATAGGGTTTTGCATGGATCACAAAGTCTGTGAACAACACA

>CP027477|3|3|2460656-2460764|CRISPRCasFinder
AGGGTTTTGCATGGATCACAAAATCTGTGAACAACACA	GAATACTGGGGTAGCTGGCAAGCCAGCCCCAAT
AGGGTTTTGCATGGATCACAAAGTCTGTGAACAACACA

Protein	Signature genes	Signature genes Name	Protein_function
CP027477.1\|AVX88873.1\|2466413_2467094_-\|DUF159-family-protein	unknown	unknown	gnl\|CDD\|376837
CP027477.1\|AVX88859.1\|2451648_2451927_-\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
CP027477.1\|AVX88874.1\|2467142_2467988_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
CP027477.1\|AVX88876.1\|2469328_2470276_+\|aliphatic-sulfonates-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270276
CP027477.1\|AVX88860.1\|2451923_2452412_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
CP027477.1\|AVX88875.1\|2468048_2469035_-\|aliphatic-sulfonates-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270274
CP027477.1\|AVX88871.1\|2465213_2465528_+\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226827
CP027477.1\|AVX88862.1\|2454084_2454429_-\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
CP027477.1\|AVX88870.1\|2464518_2465217_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
CP027477.1\|AVX88867.1\|2461858_2463232_-\|LOG-family-protein	unknown	unknown	gnl\|CDD\|378752
CP027477.1\|AVX88861.1\|2452408_2454088_-\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
CP027477.1\|AVX88869.1\|2463979_2464366_-\|DUF2784-domain-containing-protein	unknown	unknown	gnl\|CDD\|378502
CP027477.1\|AVX88868.1\|2463455_2463983_+\|DUF3087-domain-containing-protein	unknown	unknown	gnl\|CDD\|378624
CP027477.1\|AVX88865.1\|2458584_2459148_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
CP027477.1\|AVX88857.1\|2450768_2451209_+\|DUF3995-domain-containing-protein	unknown	unknown	gnl\|CDD\|372505
CP027477.1\|AVX88866.1\|2459148_2460543_+\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|226906
CP027477.1\|AVX88858.1\|2451289_2451652_-\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|183670
CP027477.1\|AVX88864.1\|2457560_2458499_-\|EamA/RhaT-family-transporter	unknown	unknown	gnl\|CDD\|223769
CP027477.1\|AVX88872.1\|2465791_2466064_-\|hypothetical-protein	unknown	unknown	unknown
CP027477.1\|AVX88863.1\|2454428_2457347_-\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157

Protein	Function_ID	Function_description	E-value
CP027477.1\|AVX88873.1\|2466413_2467094_-\|DUF159-family-protein	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	4.66462e-55
CP027477.1\|AVX88859.1\|2451648_2451927_-\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	5.2742e-34
CP027477.1\|AVX88874.1\|2467142_2467988_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	3.47286e-77
CP027477.1\|AVX88876.1\|2469328_2470276_+\|aliphatic-sulfonates-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270276	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.01636e-88
CP027477.1\|AVX88860.1\|2451923_2452412_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	1.69172e-59
CP027477.1\|AVX88875.1\|2468048_2469035_-\|aliphatic-sulfonates-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270274	cd13556, PBP2_SsuA_like_1, Substrate binding domain of putative sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.22344e-149
CP027477.1\|AVX88871.1\|2465213_2465528_+\|AzlD-domain-containing-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	1.83181e-26
CP027477.1\|AVX88862.1\|2454084_2454429_-\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	1.07599e-71
CP027477.1\|AVX88870.1\|2464518_2465217_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.56622e-57
CP027477.1\|AVX88867.1\|2461858_2463232_-\|LOG-family-protein	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	1.93497e-86
CP027477.1\|AVX88861.1\|2452408_2454088_-\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
CP027477.1\|AVX88869.1\|2463979_2464366_-\|DUF2784-domain-containing-protein	gnl\|CDD\|378502	pfam10861, DUF2784, Protein of Unknown function (DUF2784). This is a family of uncharacterized protein. The function is not known however it is conserved in Bacteria.	4.13374e-38
CP027477.1\|AVX88868.1\|2463455_2463983_+\|DUF3087-domain-containing-protein	gnl\|CDD\|378624	pfam11286, DUF3087, Protein of unknown function (DUF3087). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	9.35001e-78
CP027477.1\|AVX88865.1\|2458584_2459148_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.42877e-16
CP027477.1\|AVX88857.1\|2450768_2451209_+\|DUF3995-domain-containing-protein	gnl\|CDD\|372505	pfam13160, DUF3995, Protein of unknown function (DUF3995). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 138 and 149 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important.	9.99528e-18
CP027477.1\|AVX88866.1\|2459148_2460543_+\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	2.07595e-83
CP027477.1\|AVX88858.1\|2451289_2451652_-\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|183670	PRK12671, PRK12671, putative monovalent cation/H+ antiporter subunit G; Reviewed.	3.1438e-30
CP027477.1\|AVX88864.1\|2457560_2458499_-\|EamA/RhaT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	9.94472e-12
CP027477.1\|AVX88863.1\|2454428_2457347_-\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0

>CP027477.1|AVX88866.1|2459148_2460543_+|pyridine-nucleotide-disulfide-oxidoreductase
MAQSADILIIGGGLSGTMLAVQLLRLPGQRRILIIEPRVELGRGEAYSAVELGHTLNGNAARMSVDPDNPDDLTQWLTAHIAAGGWPESAEQNVPISELFPPRGLFGVYVQQRLAEARVVGARHGSTVEHVRAEVVDLQTDADSVQLTLNDGQHLNGAFAVLATGMFPAARTPQKDSSGLNAAALDPWDVAAMRQLDPQSTVLIIGSGLTMVDAVVSLEQAGHRGPIDVFSRHGLLPHVRRQPPAWVDFLAQDPGIRTPRQLLHELRRHCRDAIAQGIDWQAPLDTVRANIGRLWSQATDVQRRQFVRHVRPWWESHHHRSPPLSAALVVRLHNEGRLRIQAASFKGLEPSTQNGVSIRIRPRGESETRVVHGAALINSSGIEYDWRRVARPLPQQLLVRGLVRPGPLALGITAAVDGAVLDAEGQVASRLFAMGPPLRGMWWESTAVTDVALQAKALAVRLVD
>CP027477.1|AVX88865.1|2458584_2459148_+|XRE-family-transcriptional-regulator
MHKDSSQRASVLQHVSHNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLDRVAEALDVAFSDLIQAPDARDTSRINEVAWAGVIPGSKAVLLSKATATREVEQWEWCLQPGEVYPSQPDADGWSEQIYVFEGCLTLTVGEVTNTIATGEFFMFASNQPHGYRNDGSVAVRFVRNVVI
>CP027477.1|AVX88864.1|2457560_2458499_-|EamA/RhaT-family-transporter
MTSVNSSPTPLRFSRFSKAECVLVLITMVWGGTFLLVQHAMTVSGPMFFVGLRFAAAAAIVALFSWRHLRNLTLFELKAGTFIGVAIMLGYGLQTVGLQTIPSSQSAFITALYVPFVPLLQWLVLGRRPGLMPSIGIMLAFTGLMLLSGPSGAALNFSPGEIATLISAIAIAAEIILISTYAGQVDVRRVTVVQLAATSVLSFLLVVPTGEALPDFSWTLLVTALGLGAASAAIQVAMNWAQKSVSPTRATLIYAGEPVWAGIVGRIAGERLPAIALVGAGLIVAAVIVSELKTKGKVDVEVDGALENDSGN
>CP027477.1|AVX88863.1|2454428_2457347_-|monovalent-cation/H+-antiporter-subunit-A
MSLIVLLLLPFIGSCLAAVLPHNARNTESLLAGLVALIGTVQVALLYPQIAHGGVIREEFMWLPSLGLNFVLRMDGFAWLFSLLVLGIGALVSLYARYYMSPDDPVPRFFAFFLAFMGAMLGLVISGNLIQIVFFWELTSLFSFLLIGYWHHRSDARRGAYMALMVTGAGGLCLLAGVMILGHVVGSYDLDKVLAAGDQIRAHALYPILLPLILIGALSKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPSLSGSEEWFYIVSGAGACTLLLGAYCAMFQNDLKGLLAYSTISHLGLITLLLGLNSPLAAVAAVFHILNHATFKASLFMAAGIIDHESGTRDIRKLSGLIKLIPFTATLAMVASASMAGVPLLNGFLSKEMFFAETVFINATAWVEAALPIVATIAGTFSVAYSLRFTVDVFFGPTATDLPHTPHEPPRWMRAPVELLVFTCLIVGIFPAQVVGPLLAAAALPVVGGTLPEYSLAIWHGLNAPMIMSLIAMSGGIVVYLLLRNQLKRGRFKYPPLVGRFNGKRLFERSLVLMMRMARRVERRLGTRRLQMQLFLMVLAAVLAGLIPMLHSQLSWGDRPKIPGSIVFVTLWLLAIACALGAAWQAKYHRLAALTMVSVCGLMTCVTFVWFSAPDLALTQLAVEVVTTVLILLGLRWLPRRIEEVSPLPSSLRKARVRRLRDLLLSIAVGAGMALLSYAMLTRQTPNDISSFYLSRAMPEGGGSNVVNVMLVDFRGFDTLGEITVLVAVALTVFALLRRFRPPKESLQLPAQQRLLAPDVVTDLVNPRSASDTALGFMMVPAVLVRLLLPIALVVSCYLFMRGHNQPGGGFVAGLVMSVAFILQYMVAGTQWVEAQMSLRPLRWMGTGLLFATATGLGAMAVGYPFLTTHTWHFALPLLGDIHIASALFFDIGVYAVVVGSTLLILTALAHQSVRGHKTASLPKSVASKGAV
>CP027477.1|AVX88862.1|2454084_2454429_-|Na+/H+-antiporter-subunit-C
MEEVIAIAIGVLAASGVWLVLRPRTFQVVMGLCLLSYAVNLFIFSMGSLFIGKEPVIKDGVTQDLLHYTDPLPQALVLTAIVISFAMTALFLVVLLASRGLTGTDHVDGREPKE
>CP027477.1|AVX88861.1|2452408_2454088_-|monovalent-cation/H+-antiporter-subunit-D
MMAMTHLIAAPILLPLLTAAVMLMLGEKHRPLKAKINLFSSLVGLFISVMLLQWTQTTGVPGSIGVYLPGNWQAPFGIVLVVDRLSALMLVLTGIIGVSALLFAMARWDGAGSSFHALFQIQLMGLYGAFLTADLFNLFVFFEVLLAASYGLLLHGSGRARVSSGLHYISINLLASSLFLIGAALIYGVTGTLNMADLALKIPLVPEADRGLLHAGAGILAVAFLAKAGMWPLNFWLVPAYSSASAPVAAMFAIMTKVGVYTLLRLWTLLFSGQAGASAFFGGDWLIYGGMATIACAALAILAAQRLERMASLSILVSAGILLSAVGFAQPNLIGAALFYLVSSTLALSALFLLAELIERSRSANEIPLEDESELLPRPQESLQPPKGINLDDEQKAVVGQVIPWTMAFLGLSFIACALLIIGMPPLSGFIGKLSLIGALLNPLGLGDEAPISNASWALLALLILSGLASLMAFARMGVQRFWTPEERPSPLLRKLECAPVFLLLGLSIALTFKAEPLLRYTQATADALNNPQQYVMAVLGTRAVPSPEAKAAMLEVQP
>CP027477.1|AVX88860.1|2451923_2452412_-|Na+/H+-antiporter-subunit-E
MKRVFPAPLLSLALWVLWLTLNLSVSPGNLLLGAILGFAAPLMMRKLRPKQVRIRRPLTILRLFVMVGRDVILSNLIVAWGVLNAGRRPPRSRFVKVPLDLRDANGLAALAMICTVVPGTVWSELALDRSILLLHVWDLDDEAHFIHHFKTAYEQPLMEIFE
>CP027477.1|AVX88859.1|2451648_2451927_-|K+/H+-antiporter-subunit-F
MSPLLSNAILLTLFLFSLAMVLTLIRLFKGPSAQDRVLALDYLYIVAMLMMLTLGIRYSSDTYFEAALLIALFGFVGSFALAKFLLRGEVIE
>CP027477.1|AVX88858.1|2451289_2451652_-|Na+/H+-antiporter-subunit-G
MTAQLSLWVEIPVAILLVLSGVFALLGAAGLLRMKDYFQRMHPPALASTLGAWCVALASIICFSALKSGPVMHAWLIPILLAITVPVTTLLLARAALFRKRMAGDDVPAEVSSRRTESGS
>CP027477.1|AVX88857.1|2450768_2451209_+|DUF3995-domain-containing-protein
MTFVLAQWLVTIFAAIALVHVYWALGGQWAAVAAVPQVPVRGLVATVRPAFKPSGWITLLVAAALLVIAALVCMRVGWGMPPVHHKALQWVISAIALLMFARAIGDSNLVGFFKEVKGSRFARLDTWVYSPLCLLLGAGLLAVAWV
>CP027477.1|AVX88867.1|2461858_2463232_-|LOG-family-protein
MTQRHVINASVSPKGSLETLSQREVQQLSEAGSGSTYTLFRQCALAILNTGAHVDNAKTILEAYKDFEIRIHQQDRGVRLELLNAPADAFVDGEMIASTREMLFSALRDIVYTENELDSQRIDLSTSQGISDYVFHLLRNARTLRPGVEPKIVVCWGGHSINTEEYKYTKKVGHELGLRSLDICTGCGPGVMKGPMKGATIAHAKQRIHGGRYLGLTEPGIIAAEAPNPIVNELVILPDIEKRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNQGLPFPVILTGPKHAAPYLEQLDAFVTATLGDAAKQHYEIIIDDPAEVARQMTAGLKAVKQFRRERNDAFHFNWLLKIDESFQRPFDPTHENMANLKLHRDQPPHELAANLRRAFSGIVAGNVKDKGIRLIEEHGPYQIRGDAAIMQPLDALLKAFVAQHRMKLPGGAAYVPCYRVVA
>CP027477.1|AVX88868.1|2463455_2463983_+|DUF3087-domain-containing-protein
MFEIQPMDPATFRQQTRRSTLIIAVLFLVLAMALSTAAVALFGEPGGDNLRFNVGGVFVAFLLTAALMRGQFWQQPWMAPAVYSWRLKRSLMSVTNVMHQVTAAVEQNDPTAMKVLRFYHLGLTQMHELDGNSSDHAQLQREVAAHQERMQALGLEIDQKRLDPAWLQALKPAAR
>CP027477.1|AVX88869.1|2463979_2464366_-|DUF2784-domain-containing-protein
MLYRIAADGLVLFHLSFILFVLFGGLLVLKWPRLMWLHLPAAAWGVAVEVLHLTCPLTYWENLMRHAAGQTEYAGGFIEHYIWPIIYPAGLTPQIQLALGSVVLVVNLLVYGRLARAWKLRRASRIPF
>CP027477.1|AVX88870.1|2464518_2465217_+|branched-chain-amino-acid-ABC-transporter-permease
MSDSLMPRRAFLRGAAAIMPLSLATAPWGLLAGSMAIEANLTPLQGQGLSSIVFAGAAQLVAIGMLKGGAGIFSILLTTLLLTSQHLLYGMSMRSVISPLPGRWRIGLGFLLTDELFALTSQHDRQQFNRWYALGVGLTFYIAWNLFTLAGIVLGSSIPGLEHLGLDFSIAATFIALITPVVRNVPTVVCVAVSLFCSVLFSYWQWGSALVLSGLAGMTAGFVCNKLYRGRT
>CP027477.1|AVX88871.1|2465213_2465528_+|AzlD-domain-containing-protein
MMVWAVIVGMGILVFLNRYVFLEPRLPLRLSSNARQFLGFAVPGMLTAICGPIVFMPDKQLNVQWDNPYLLSSLVAIGLVLYTRNTLLSMLLSMAFFFLLRWWL
>CP027477.1|AVX88872.1|2465791_2466064_-|hypothetical-protein
MRDDFAIKQANGLECIYLSMTERFQLDCFIGHYIKTRNLRSVPDIERILRTTLEGYPGHPPVMVNELNAWIDKTLGYRASHPDFPHLEDL
>CP027477.1|AVX88873.1|2466413_2467094_-|DUF159-family-protein
MCGRLSQYRGIHDFVAVLSIPDALINHVGDAALEHYNAAPTTSLAILHQYDQRLYADNLRWGWRPHWAKDRAAPINARVEKVAHGPFFRAIWRHRLIVPVDNWFEWVDGPDDTRQPWLIRRADHGPVFCAAIGQFPTPGNDARDDDGFVIITADSVGGLLDIHDRRPVVFRPELAAEWLDPATPTERAEQMLLFEGEASEAFAWHKVGKAVGNSRNQGANLIEEVA
>CP027477.1|AVX88874.1|2467142_2467988_-|ABC-transporter-permease
MTTRSNELPAPPRRLSRPRASSLNPTWRRHFKGLALPLLIVVVLEFIVRLGWLPSYQMPAPSEIALTLTDLAEGALWKHIGASLIRVLLGFAIGASLALVFAAWVGLSREAEAYLEPTFAALRSIPSLAWVPLLLLWLGIDETSKIVLIAIGAFFPVYVNVVAAIRNIDRKLVEVGRIYGFSRLQLVRRILLPAALPGLFTGLRSGMSLAWMFLVAAELIAATKGLGYLLSDGRETSRPDIVLAAIIVLAVLGKLSDGVLALLERRWLVWRDTFTGQAAQD
>CP027477.1|AVX88875.1|2468048_2469035_-|aliphatic-sulfonates-ABC-transporter-substrate-binding-protein
MTSFSPFFRLKTLLVASAMALSLQPLAHATETVPAEVHLDYAYYSPVSLVLKHFGFLEKALPQTKVSWVLSQGSNRSLEYLNSGGVDFASSASLAAVLSRANGSPIKSVYVYSRAEWTALVVRKDSPYQSVADLKGKKIAATKGTDPYLFTLRSLQQAGLKKDDVELVHLQHPDGRTALEKGDVDAWAGLDPHMAASQVQAGSRLLYRNPAFNSYGVVSVTEQYAKEHPHTIDTVIKAYEQARQWALQNPDEFAALLAKESGLPLDVAKLQLSRTDLSSPQLTANDVQASKAAAPILVSEELVRRGVNVDQVIDQLLDSGVQQAVARQ
>CP027477.1|AVX88876.1|2469328_2470276_+|aliphatic-sulfonates-ABC-transporter-substrate-binding-protein
MKLSKFLRITLTAGLFSSPLAYSAEPLVLHVGDQNYYNIRASIEASGVLKDAPYSVDWKHFQAAAPLAEALQTGSLDLGFLGDSGFLFLAAKQAPVKLIGVSRQNPDTIALLVPKDSPVKTIADLKGKKVAYWPGAWSQQLTLRALEQGGLPENYVDFVKLMPIDAAAALPQGSIDAFPVWEPYISQQIVFSGARPILTAKNLMPGLSAIAASAPSIDSKRAAIADFLERLKRARAWVDSHTDEYADLWAKKANLDQQVSRHWLRQAHMSIGPVDRQAAADLQSTADFLFKVKALPAPLATAGIIDTSFQQALAD

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Crispr_ID: CP027477_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027477_4

3490210-3490299

Orphan

Consensus_repeat	Method
ACAAAACCTGTGGGAGCTGGCTTGCCAG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP027477_4

>merge|CP027477|4|3490210-3490299|CRISPRCasFinder
ACAAAACCTGTGGGAGCTGGCTTGCCAGGGATCTACTGTGTGCTCACTTTCTGAGCCGCATTACAAAACCTGTGGGAGCTGGCTTGCCAG

>CP027477|4|4|3490210-3490299|CRISPRCasFinder
ACAAAACCTGTGGGAGCTGGCTTGCCAG	GGATCTACTGTGTGCTCACTTTCTGAGCCGCATT
ACAAAACCTGTGGGAGCTGGCTTGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP027477.1\|AVX89663.1\|3486330_3487200_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|275075
CP027477.1\|AVX89672.1\|3494312_3496568_-\|lysine-decarboxylase	unknown	unknown	gnl\|CDD\|185297
CP027477.1\|AVX89665.1\|3488167_3489058_-\|NAD(+)-kinase	unknown	unknown	gnl\|CDD\|179257
CP027477.1\|AVX89661.1\|3485210_3486041_-\|DUF2797-domain-containing-protein	unknown	unknown	gnl\|CDD\|378524
CP027477.1\|AVX89666.1\|3489173_3490124_+\|DUF1853-domain-containing-protein	unknown	unknown	gnl\|CDD\|378094
CP027477.1\|AVX89674.1\|3497758_3498220_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
CP027477.1\|AVX89675.1\|3498311_3499070_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
CP027477.1\|AVX89657.1\|3476987_3477311_-\|hypothetical-protein	unknown	unknown	unknown
CP027477.1\|AVX89673.1\|3496773_3497532_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
CP027477.1\|AVX89668.1\|3491761_3492319_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
CP027477.1\|AVX92294.1\|3499136_3499904_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
CP027477.1\|AVX89658.1\|3477759_3479796_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP027477.1\|AVX89670.1\|3492824_3493718_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
CP027477.1\|AVX89667.1\|3490317_3491601_-\|arsenical-efflux-pump-membrane-protein-ArsB	unknown	unknown	gnl\|CDD\|185342
CP027477.1\|AVX89662.1\|3486037_3486298_-\|DUF1315-domain-containing-protein	unknown	unknown	gnl\|CDD\|225681
CP027477.1\|AVX89671.1\|3493683_3494298_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP027477.1\|AVX89660.1\|3482542_3485200_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
CP027477.1\|AVX89659.1\|3480130_3482401_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
CP027477.1\|AVX89664.1\|3487196_3488168_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277358
CP027477.1\|AVX89669.1\|3492502_3492739_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027477.1\|AVX89663.1\|3486330_3487200_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|275075	TIGR04239, GlpG_protein, rhomboid family protease GlpG. GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain.	8.29785e-45
CP027477.1\|AVX89672.1\|3494312_3496568_-\|lysine-decarboxylase	gnl\|CDD\|185297	PRK15399, PRK15399, lysine decarboxylase.	0
CP027477.1\|AVX89665.1\|3488167_3489058_-\|NAD(+)-kinase	gnl\|CDD\|179257	PRK01231, ppnK, NAD(+) kinase.	0
CP027477.1\|AVX89661.1\|3485210_3486041_-\|DUF2797-domain-containing-protein	gnl\|CDD\|378524	pfam10977, DUF2797, Protein of unknown function (DUF2797). This family of proteins has no known function.	1.17579e-145
CP027477.1\|AVX89666.1\|3489173_3490124_+\|DUF1853-domain-containing-protein	gnl\|CDD\|378094	pfam08907, DUF1853, Domain of unknown function (DUF1853). This family of proteins are functionally uncharacterized.	7.1684e-116
CP027477.1\|AVX89674.1\|3497758_3498220_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	3.01074e-99
CP027477.1\|AVX89675.1\|3498311_3499070_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.71838e-05
CP027477.1\|AVX89673.1\|3496773_3497532_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	1.20598e-151
CP027477.1\|AVX89668.1\|3491761_3492319_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	6.00754e-42
CP027477.1\|AVX92294.1\|3499136_3499904_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	1.79221e-144
CP027477.1\|AVX89658.1\|3477759_3479796_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.30154e-53
CP027477.1\|AVX89670.1\|3492824_3493718_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.6825e-28
CP027477.1\|AVX89667.1\|3490317_3491601_-\|arsenical-efflux-pump-membrane-protein-ArsB	gnl\|CDD\|185342	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB.	0
CP027477.1\|AVX89662.1\|3486037_3486298_-\|DUF1315-domain-containing-protein	gnl\|CDD\|225681	COG3139, COG3139, Uncharacterized protein conserved in bacteria [Function unknown].	5.01176e-29
CP027477.1\|AVX89671.1\|3493683_3494298_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.45211e-17
CP027477.1\|AVX89660.1\|3482542_3485200_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
CP027477.1\|AVX89659.1\|3480130_3482401_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
CP027477.1\|AVX89664.1\|3487196_3488168_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|277358	cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.22858e-109

>CP027477.1|AVX89666.1|3489173_3490124_+|DUF1853-domain-containing-protein
MILFPDLLQLPHQLRHPEVRDLAWVILAPPMLAATPWPQRHPLAGSDWVSDPARLEQWLRQLDRDSYGLLHWLSQARTRRLGLYYERLWQFAVEHAPGIELIAANLPIRREGHTLGELDMLLRDRDGVHHLELAIKLYLGPQNGDGHDPAQWLGPGCHDRLDRKLAHLAEHQLPISARPESREALATLDIEVFSAQLWLGGYLLYPWPGTSASPSGAHPQHLRGSWLHQKDWPAFVAQRPAGRWQPLPRHAWLAPAHYPADQTWSAEHLQMWLDDLEPMAPAQLLVRLTENAQGEWEEAERLFLVADLWPNVPGQA
>CP027477.1|AVX89665.1|3488167_3489058_-|NAD(+)-kinase
MEQFRNIGIIGRLGSSQVLDTVRRLKRFLLDRHLHVILEDTIAEVLPGHGLQTSSRKMLGEVCDMVIVVGGDGSLLGAARALAKHNIPVLGINRGSLGFLTDIRPDELEVEVAKVLDGHYLVENRFLLQAEVRRHAEAIGQGDALNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLSSRPIVVDGNSELKIVVSKNMQIYPQVSCDGQNHFTCAPGDTITVSKKAQKLRLIHPLDHNYYEVCRTKLGWGSKLGGGGD
>CP027477.1|AVX89664.1|3487196_3488168_-|serine/threonine-protein-phosphatase
MLDPARSYDLIGDVHGCALTLEHLLDRLGYHKQGGVWRHPSRMAVFVGDIIDRGPRIREALHIVHDMVEAGQALCIMGNHEFNALGWSTPALPGSGKQFVREHTPRHTRLLQETLTQFEDHPGDWHDFLNWFYELPLVVDAGRFRVVHACWDASLIEPLRGLFPDARIDEHFLQASAVPGSFACTVFDRLLRGTDMRLPDGLTMTSGDGLVRSFFRTKFWEDDPKTYGDIVFQPDALPEPVAQKPLTSSEKNNLLRYGIDEPLLFVGHYWRSGKPAPIRPNLACLDYSAVLYGKLVAYRLDQETRLDPHKFVWVDVERPEVLQ
>CP027477.1|AVX89663.1|3486330_3487200_-|rhomboid-family-intramembrane-serine-protease
MSAVAVLRLPLAVDLSGFVKLLQRMQVPHRVSEEAGEQVLWAPAEISEDVRSLYERFPAGDPDQQLDIPLAPTFKRPSFAEQLKHAKATGLILLLSLLVGGLTYLGDNLDTIRWLTFLDFRVVGEYIQFTPLADSLAAGQWWRLFTPMLLHFGILHLAMNGMWYWELGRRIESRQGSINLLGLTLLFSLVSNYAQFAWSGPSLFGGLSGVLYGLLGHCWIFQLLAPNPAYRLPRGVLVMMLVWLVICMSGLVSMIGFGQIANAAHVSGLLIGCFTGLLGGLYNRRKLAA
>CP027477.1|AVX89662.1|3486037_3486298_-|DUF1315-domain-containing-protein
MSSFNDMIKNITPDIYESLKLAVEIGKWSDGGKLTAEQRELSLQAMIAWEIQNLPEDQRTGYMGPQECASKSIEVPNILFKSDAIH
>CP027477.1|AVX89661.1|3485210_3486041_-|DUF2797-domain-containing-protein
MIEIGRGAISKMSARLDGPNVQYAFRLDDVEVPVNPMIGTTVRLEYLGAIHCTHCGRKTKTSFSQGYCYPCMTKLAQCDLCIMSPERCHFEAGTCREPEWGQKFCMTDHVVYLANSSGIKVGITRATQLPTRWLDQGASQALPIMRVSTRQQSGFVEDLFRSQVADKTNWRALLKGDAAAVDLAQVRDQLFESCAEGLQGLQQRFGLQAIQTIADVEPLEIRYPVEQYPAKIVSFNLDKNPIAEGTLLGIKGQYLIFDTGVINIRKYTAYQLAVHQ
>CP027477.1|AVX89660.1|3482542_3485200_-|aminopeptidase-N
MRTEQPKMIYLKDYQAPEYLIDETHLTFELFEDHSLVHAQLVMRRNPERGPGLPPLVLDGQQLELLSVTLADQELGAGEYQLTENTLTLQPASASFTVDTSVRIHPETNTALEGLYKSGTMFCTQCEAEGFRKITYYLDRPDVMSKFTTTVVAEQHSYPVLLSNGNPIASGPGEDGRHWATWEDPFMKPAYLFALVAGDLWCVEDTFTTMTNRNVALRIYVEPENIDKCQHAMNSLKKSMRWDEEVYGREYDLDIFMIVAVNDFNMGAMENKGLNIFNSSAVLARAETATDAAHQRVEAIVAHEYFHNWSGNRVTCRDWFQLSLKEGFTVFRDAGFSSDMNSATVKRIQDVAYLRTHQFAEDAGPMAHAVRPDSFIEISNFYTLTVYEKGSEVVGMIHTLLGAEGFRKGSDLYFERHDGQAVTCDDFVKAMEDANGVDLTQFKRWYSQAGTPRLAVSESYDAAAKTYSLTFRQSCPETPDKVEKLPFVIPVELGLLDSKGNEIALRLAGEAAAQGTSRVISVTEAEQTFTFVDIAEHPLPSLLRGFSAPVKLSFPYNRDQLMFLMQHDSDGFNRWDAGQQLSVQVLQELIAQQQKGESLVLDPRLISALKTVLSDESLDQAMVAEMLSLPSEAYLTEISEVADVEAIHSAREFARKQLADNLFEALWLRYQANRDLSKQTPYVAEAEHFARRALQNIALSYLMLSGKPEVLAATQEQFENSDNMTERLTALAVLVNSPFEEQKAKALTTFAEHFKDNPLVMDQWFSVQAGSTLPGGLARVKTLMQHPAFNIKNPNKVRALVGAFAGQNLINFHAADGSGYRFLADLVIELNGFNPQIASRQLAPLTRWRKYDSARQALMKAELERILASGQLSSDVYEVVSKSLA
>CP027477.1|AVX89659.1|3480130_3482401_+|catalase/peroxidase-HPI
MANESKCPFNHAAGGGTTNRDWWPNQLNLKILSQHSPKSDPLGKDFNYAEAFKSLDFQALKQDLRALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRTADGRGGAGSGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGRNISWADLIVLTGNVALESMGFKTFGFSGGRPDVWEPDEDVYWGSEREWLGGDSRYGKDKSAMQEPGDGTLVAEPDLHGKEESRTDQGERNLENPLAAVQMGLIYVNPEGPEGNPDPVASGRDIRETFGRMAMNDEETVALIAGGHAFGKTHGAGPADNVGPEPEAAGLEEQGLGWRNAFGTGKGADTITSGLEVTWTTTPTQWSNNYLENLFGFEWELFKSPAGAHQWKPKNGAGAGTVPHAHDPSKKLSPTMLTSDLALRFDPIYEPIARRFLANPDQLADAFARAWYKLIHRDMGPLSRYLGPELPNEELLWQDPIPEATHPLIDSNDAAALKSKVLASGLSVSQLVSTAWAAASTFRGSDKRGGANGGRLRLAPQKFWHANQPEQLDKVLKTLEGIQNEFNAGSSGKKVSLADLIVLAGNAGVEQAAKNAGHSVSVPFNPGRTDATQEQTDVESFGFLEPIADGFRNYSKGKYTVSAEALLIDKAQLLTLSAPEMTVLVGGLRVLGANVGQSRHGVFTSRTETLSNDFFTNLLDMGVEWKPTSPAADEFEGRDRKTGSVKWTATRVDLVFGSNAILRALAEVYASADAKEQFVKDFVAAWAKVMELDRFDLK
>CP027477.1|AVX89658.1|3477759_3479796_-|TonB-dependent-receptor
MPARSQPLQRRLTPLAAALLVASPVFAAEPLELQPQVITGKPLGSQTLASPSTVLSGDDLTLQQKGSLGETLNKQPGVSSSYFGPGASRPIIRGQDGDRIRILRNGVGALDASSLSYDHAVPLDPVNVERIEIVRGPAALLYGGSAIGGVVNTFDNRIPTEAIEGIHGAGELRYGGADTTRSSAGKLEAGNGQFALHLDASAREFNDLKIPGYAKTGTARANDDGDSRRHRLANSDGRQDGGAVGSSYTWDDGYAGLSYSHYDSNYGSPAEDDVRIRMQQEHYAFASEMRNLDGPFSAIKLDAGYTDYQHREIEGGEVGTTFKNKGYEARVEARHQPLGPFNGVIGAQVSRNEFSALGEEAFVPHTDTDAGALFILEELQATERLLFTLGGRLEHTSVDPDAKGNERFANADRSSSFTAGSLSSGAVYTLTPIWSVAATLGYTERAPTFYELYANGAHVATGTYEVGDTGLSKEKAVSSDLALRFDNGTHKGSVGVFYSHFSNYIGLLGTGRTLNDEGEEDAGGIPEYTYSGVRARFSGIEAQDRWTLGENAYGKFALELSGDYTRAKNLDNGQDLPRIAPLRLNNGLLWELDRWQARIDIEHASSQHRVPDNESSTDGYTTLGANVGYHFDVGQSKWLAFVNAENLTNQTVRYASSILRDIAPAQGRSIQVGLRTTF
>CP027477.1|AVX89657.1|3476987_3477311_-|hypothetical-protein
MVAKTNLLFHTADKDYFIVGADDYNHNVVTFCVPQDLIKDGPHQVRWYEGGLVWSVRISNVSHVIKQGLANVTFLRTGENRSGVSGDIDFVLPDGKTVTGKFEIKRI
>CP027477.1|AVX89667.1|3490317_3491601_-|arsenical-efflux-pump-membrane-protein-ArsB
MLAASLIFLLTITLVIWQPKGLGVGWSATLGAVLALIFGVVHLSDIPLVWQIIWNATGTFVALIIISLLLDEAGFFAWAALHVARWGRGSGRKLFAYMVLLGALVSALFANDGAALILTPIVISMLLALRFSPAATLAFVMGAGFIADTASLPLVVSNLVNIVSADFFHIGFNRYAAVMVPVNFVSVAATLGVLMWFFRRDIPKAYDPEQLEQPHTAIHDKATFYAGWVVLVILLIGCFFLEQLGIPISAISAVCAALLVGIAARGHKISTRKVLKEAPWQIVIFSLGMYLVVYGLRNAGLTGYLAGWLDVFAGYGVWGAALGTGVLTALLSSIMNNLPTVLIGLLSIDASQASGVVKEAMIYANVIGSDLGPKITPIGSLATLLWLHVLARKDIRIGWGYYFKVGIVLTVPVLLITLAALALRLSL
>CP027477.1|AVX89668.1|3491761_3492319_-|NAD(P)H-dependent-oxidoreductase
MSNVYNVAVVVGSLRKASINRKVALALAELAPANLKLKIVEIGDLPLYNEDIDGDSPPAAYSTFRQQVGSSDAVLFVTPEYNRSVPAPLKNAIDVGSRPYGKSVWSGKPGAVISVSPGAIGGFGANQHLRQSFVFLDVPCMQQPEAYLGGAGSAFDEAGKLSESVKPFLQNFINAYGKFVEQHKK
>CP027477.1|AVX89669.1|3492502_3492739_+|hypothetical-protein
MAAVLVGQFHARDAEGRVYSVHEFQESTPSADGFTGMEPVTTYKLAIGDRVKKLSDNEFLLVQSDITLIREPEPTVAQ
>CP027477.1|AVX89670.1|3492824_3493718_+|LysR-family-transcriptional-regulator
MRLRHIEVIQALLQTGHLGTAAEWLQLPVTDVEERLREAESELGFMLFASVRGRLQSTPEARALQVEIAHVYQALEPVQRLASSLKQYLAPPLRIIGTPPLAQLLLPQSIALLRRRLPDAPCRLLSSPTCDIVRSLLLRESDLGLSLHDPEHPDIHCQPLAHGKLQLLAPHGWLQPKQKYISLQDLAGQAMVGLEGHDPLSPALENKLQALRPAPSIQTRVQTHQMMRSMVEAGEGLAIVDPFTALGARAGGLDVCPLSPAVPISLYALSYRHNATPAAIQTLLAIVTEQAEAMLAS
>CP027477.1|AVX89671.1|3493683_3494298_-|GNAT-family-N-acetyltransferase
MQPVMNPKYPGLSVRVADDGFATYIWGSDFSFEVAAYGAAVIGQPVERWAVTPIVPYRKCYGIDPEEFSSYRDAADSAIFMAYLYDEPVGHLVISTNWNGFAHIDELAVHAPARRHGVAKALLDVAQFWSRKKKLPGIMLETQNNNLGACRLYERCGYEIGGIDHLRYRGIDPNTAEIALFWYRLFDNPLENPLSSPASPRLVP
>CP027477.1|AVX89672.1|3494312_3496568_-|lysine-decarboxylase
MYKDLKFPVLIVHRDIKADTVAGERIRGIARELEQEGFKIVSAIDYTEGRLVASTHHGLACMLIAAEDASTNSHLLQNMAELIGLARVRAPDLPIFALGEQVTLENAPADAMAELNQLRGILYLFEDTVPFLARQVARAARKYLDGLLPPFFKALVQHTADSNYSWHTPGHGGGVAYHKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEERAARNFGADHTFFVINGTSTANKIVWHSMVGRDDLVLVDRNCHKSVLHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSRESIQAKIDASPLTKGRAPKVKLAVVTNSTYDGLCYNAELIKQSLGSSVEVLHFDEAWYAYAAFHEFFAGRYGMATSRTEDSPLVFTTHSTHKLLAAFSQASMIHVQDGGARQLDRDRFNEAFMMHISTSPQYSIIASLDVASAMMEGPAGRSLLQETFDEALSFRRALANLRQHIAADDWWFSIWQPPGVEGIDRVQTEDWLLQPDADWHGFGEVSDDYVLLDPIKVTLVMPGLNAGGALSEKGIPAAVVSKFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRSYDANVSLASCLPCVAQQDTARYRGMGLRDLCDQLHACYRSNATAKHLKRMYTVLPEIAMKPAHAYDQLVRGEVEAVPIDELEGRVAAVMLVPYPPGIPLIMPGERFTEATRSIIDYLKFARTFDSSFPGFVADVHGLQHEDEGNGRQYTVDCVKE
>CP027477.1|AVX89673.1|3496773_3497532_-|DNA-polymerase-III-subunit-epsilon
MATRSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCTILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAGNASDGNGTGEGADNSATEIRRLPANRQPARIIRATEDELAEHLARLEIIAKSAGGPALWTQIAEADAQA
>CP027477.1|AVX89674.1|3497758_3498220_-|ribonuclease-HI
MSESVDSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELLGAIRGLEALKRPCEVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWKELDEQVNRHKVTWKWVRGHIGHHGNERADQLANRGVDEVRGYKQS
>CP027477.1|AVX89675.1|3498311_3499070_-|methyltransferase-domain-containing-protein
MTDKAFAQADPDWLALIGAAREWLAGPLGQFLLDEERRMLEDELGRFFGGYLVHYGPSAQTPPSAPQVQRNVRLGAPLPGVEIVCEEQAWPLSEHAADVVVLQHGLDFCLSPHGLLREAASSVRPGGHLLIIGINPWSTWGLRHVFAHDALRQARCISPSRVADWLNLLGFALEKRRFGCYRPPLASPKWQARLAGWERKAGDWQLSGGGFYLLVARKIVVGLRPVRQERREPMGKLIPLPMAKVNRRRIEP
>CP027477.1|AVX92294.1|3499136_3499904_+|hydroxyacylglutathione-hydrolase
MIQISALPAFTDNYIWLLQDHRTQRCAVVDPGDAAPVQAWLTAHPGWVLSDILITHHHHDHVGGVERLKAVSGATVYGPASENIPGRDVALKDNDTVSVLGWDFDVYAVPGHTLGHIAYYHHGLLFCGDTLFAAGCGRLFEGTPQQMHHSLSRLAALPEDTLVYCTHEYTLSNLKFAAAVEPSNPDIAARLEKVTQQREKGVMTLPSTLALEKLTNPFLRTSETLVTQKVDERAGAQNRAPSEVFAALRAWKDKF

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Crispr_ID: CP027477_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027477_5

3571598-3571701

Orphan

Consensus_repeat	Method
AGGCCGCCATCGCTGGCAAGCCAGCTCCCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027477_5

>merge|CP027477|5|3571598-3571701|CRISPRCasFinder
AGGCCGCCATCGCTGGCAAGCCAGCTCCCACACTGGGATCGGGTGCCATCAGTTAGACATTGGTCGGCTGTCAGGCCGCCATCGCTGGCAAGCCAGCTCCCACA

>CP027477|5|5|3571598-3571701|CRISPRCasFinder
AGGCCGCCATCGCTGGCAAGCCAGCTCCCACA	CTGGGATCGGGTGCCATCAGTTAGACATTGGTCGGCTGTC
AGGCCGCCATCGCTGGCAAGCCAGCTCCCACA

Protein	Signature genes	Signature genes Name	Protein_function
CP027477.1\|AVX89736.1\|3568580_3568976_-\|DUF4280-domain-containing-protein	unknown	unknown	gnl\|CDD\|379472
CP027477.1\|AVX89729.1\|3560426_3561452_+\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|226051
CP027477.1\|AVX89739.1\|3572067_3572325_-\|DUF1652-domain-containing-protein	unknown	unknown	gnl\|CDD\|311697
CP027477.1\|AVX89737.1\|3569166_3570234_+\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|270703
CP027477.1\|AVX89730.1\|3561453_3563994_+\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528
CP027477.1\|AVX89741.1\|3574142_3575036_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182183
CP027477.1\|AVX89734.1\|3566014_3568024_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
CP027477.1\|AVX89738.1\|3570256_3571024_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|180802
CP027477.1\|AVX89733.1\|3565449_3565965_+\|hypothetical-protein	unknown	unknown	unknown
CP027477.1\|AVX89743.1\|3577255_3577720_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
CP027477.1\|AVX89732.1\|3564754_3565390_+\|hypothetical-protein	unknown	unknown	unknown
CP027477.1\|AVX89742.1\|3575042_3577256_-\|aldehyde-oxidase	unknown	unknown	gnl\|CDD\|224446
CP027477.1\|AVX89735.1\|3568036_3568579_+\|toxin-antitoxin-system-YwqK-family-antitoxin	unknown	unknown	gnl\|CDD\|225405
CP027477.1\|AVX89748.1\|3582632_3583277_+\|aromatic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|223241
CP027477.1\|AVX89747.1\|3581250_3582636_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
CP027477.1\|AVX89746.1\|3579995_3580901_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
CP027477.1\|AVX89745.1\|3579061_3579991_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
CP027477.1\|AVX89731.1\|3564052_3564625_+\|hypothetical-protein	unknown	unknown	unknown
CP027477.1\|AVX89744.1\|3577838_3578729_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP027477.1\|AVX89740.1\|3572459_3573956_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
CP027477.1\|AVX89736.1\|3568580_3568976_-\|DUF4280-domain-containing-protein	gnl\|CDD\|379472	pfam14107, DUF4280, Domain of unknown function (DUF4280). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 129 and 456 amino acids in length. There is a single completely conserved residue C that may be functionally important.	4.76111e-37
CP027477.1\|AVX89729.1\|3560426_3561452_+\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|226051	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	1.21204e-88
CP027477.1\|AVX89739.1\|3572067_3572325_-\|DUF1652-domain-containing-protein	gnl\|CDD\|311697	pfam07865, DUF1652, Protein of unknown function (DUF1652). This is a family containing hypothetical bacterial proteins.	2.68781e-17
CP027477.1\|AVX89737.1\|3569166_3570234_+\|phosphotransferase-family-protein	gnl\|CDD\|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.51071e-97
CP027477.1\|AVX89730.1\|3561453_3563994_+\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
CP027477.1\|AVX89741.1\|3574142_3575036_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182183	PRK09986, PRK09986, LysR family transcriptional regulator.	2.52064e-89
CP027477.1\|AVX89734.1\|3566014_3568024_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	0
CP027477.1\|AVX89738.1\|3570256_3571024_+\|short-chain-dehydrogenase	gnl\|CDD\|180802	PRK07035, PRK07035, SDR family oxidoreductase.	0
CP027477.1\|AVX89743.1\|3577255_3577720_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	8.36554e-74
CP027477.1\|AVX89746.1\|3579995_3580901_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	9.52839e-69
CP027477.1\|AVX89742.1\|3575042_3577256_-\|aldehyde-oxidase	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	2.0971e-77
CP027477.1\|AVX89735.1\|3568036_3568579_+\|toxin-antitoxin-system-YwqK-family-antitoxin	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	3.74877e-23
CP027477.1\|AVX89748.1\|3582632_3583277_+\|aromatic-acid-decarboxylase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	5.78302e-98
CP027477.1\|AVX89747.1\|3581250_3582636_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	3.98588e-148
CP027477.1\|AVX89745.1\|3579061_3579991_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	2.21423e-62
CP027477.1\|AVX89744.1\|3577838_3578729_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.74198e-58
CP027477.1\|AVX89740.1\|3572459_3573956_-\|PAS-domain-S-box-protein	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.39132e-26

>CP027477.1|AVX89738.1|3570256_3571024_+|short-chain-dehydrogenase
MSKTQLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKLEGCQHVADAIIAAGGKATAVACHIGEMEQISQVFAGIKEQFGRLDILVNNAATNPQFCNVLDTDLSAFQKTVDVNIRGYFFMSVEAGKLMRENGGGSIINVASINGISPGIFQGIYSVTKAAVINMTKVFAKECAQFGIRCNALLPGLTDTKFASALVKNDAILKQALTQIPLKRVADPSEMAGAVLYLASDASSYTTGVALNVDGGFLS
>CP027477.1|AVX89737.1|3569166_3570234_+|phosphotransferase-family-protein
MALTDQSTRIRSGEELDASLIDPYLKAHIPGLTGTPQISQFPGGASNLTYLLEYPDQEFVLRRPPFGHKAKSAHDMGREFRILNQLRDGFPYCPKAYVHCTDESVIGAEFYVMERVKGIILRSDLPPELGLDAARTEALCKSFIDRFVELHRVDYNACGLGDLGKPEGYVARQIKGWSERYEKALTPDAPHWEKVKAWLNDKMPADHPTSSIVHNDYRFDNVILDPDNPMQIIGVLDWELTTLGDPLMDLGNTLAYWIQADDPAPVQLMRRQPSHAPGMLSRREFVDYYAERSGIRIDNFDFYYTYGLFRLAGIVQQIYYRFYHGQTQDKRFAQFIHMNKLLEHMSLQVIAKSSL
>CP027477.1|AVX89736.1|3568580_3568976_-|DUF4280-domain-containing-protein
MGCPQVCASATLQCSFGAAPAVLNVLPVNRTLTGGMPAANIMDHIPLVNVTTFGMCMSMANPMVAAATAAALGVLTPMPCIPDTATPWIPGGAPTLLLGGMPAIDANSTLMCNWAGVIKIVMPGQMQMLIP
>CP027477.1|AVX89735.1|3568036_3568579_+|toxin-antitoxin-system-YwqK-family-antitoxin
MAITPLDLQQDDKHLKGRLKDGQLDGPLNIKDDGRQQADLNYSQGQLQGTSLLYHPNGKVSAQMPFVRDKLQGVASFYAPEGWLQRKASYRRGLLHGEAFNYFPDGQVAEAEFYRDGVREGRYQRFHPNGKPAVDARYLNGQLMEPEQGFAEDGRPLDADGKPISRVRWWFRKWTDPQQA
>CP027477.1|AVX89734.1|3566014_3568024_+|type-VI-secretion-system-tip-protein-VgrG
MPRATDSNATLSLTAAALSALYPEWLSGEEALNSLCSQTLNGLNDGISLTLTTAIASHVTTTLHNDAQLRPFDALVAEIRQLPADATAERYQLVLRPWLWWLTLASNNRVFQNLTTSDIVTTIFKAHGFTDFKLSLTGSYTPREYCVQYSETDFAFVSRLLEEEGIFWFFTHDEGKHTLVLGDSNDAFVQIPNGPKVKYLGQQMGERELHGIRSGQVCLQAVAGVYKATDYEFTTPTTSLFGQAEAVAGPRSIYEHPGGYNAKARGDALTKQRVDGLRSEEKRFVGESDCRWLIPGHWFTLDGHEDESLNIDWVVTRVTHDASHESYRNRFEAIPKATPFRPERVTPKPRMHPQTAIVVGKSGEEIWTDEYGRIKLQFPWDRDGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNALPYALPANQTQSGIKTQSSKGGGGFNELRFEDKKDAEEVFLQAQKDLKINVLNDTTATVGHDETLTVQNARTRTVKDGDETVTLEKGKRSVTIQTGSDSLDVKDSRTVKVGADQNHSTGGNYTDKVTGDYSLTVDGNLTIKVSGTLTLQSGGSFTIKSGADLATSASTSITQKAGTAMTNQAGTSLDNKAGTTLTNDAGISLTNKGAASQTVDGGGMLTIKGGLVQVN
>CP027477.1|AVX89733.1|3565449_3565965_+|hypothetical-protein
MKDTLLTYIDEDGKKAAKKLWAKYSGICDLIAPTSLGWRDAFGGMLIIIGHGSTMVKMDRHTGLHNMIGNCGSCFIVLAACEVGETHISIGELQPIAQGLANLRPNAIVWGTTRDLPQQAVSDGTCFYKSPLFNWLQPANDHFPGLWKQFRKQSDIEAVMSMMPNLNFNSL
>CP027477.1|AVX89732.1|3564754_3565390_+|hypothetical-protein
MEQFNSVQEGIAELHKRNTGNKKVHALLTFQHNNHKMCKTCFLFESKEDAGAQLIKAYVQLQISNVPRNEMQAAIDARQVAINAELAEGDPAELGVVPEGHAEEFLIDYFDTAVAIAEDVKYVTVYLTHSPCTPTDRKPSHSLPGWPLSCTAKFATLAANHPEYFFSIVFLKKFGTLDGNDTPQRTLKTLSGDRANLAFIELKKEPPYERP
>CP027477.1|AVX89731.1|3564052_3564625_+|hypothetical-protein
MTEADFLNAVLQAAGVHPKLQDTDEPSQFTKSWVSEGPWESAAQVEIAHHLRRGYGITTKIREISYPEPYSSEKVDFYFELQDESYAIEIKVESTNGLFGGANLQESITRDVYKLGGFVADHRWVVVIATSQKNCELLDLTLNRGDSWSRDVEGQFKAYLCNIDTYPHGLPIDRSKQLSAPFNFITNYHK
>CP027477.1|AVX89730.1|3561453_3563994_+|type-VI-secretion-system-ATPase-TssH
MELASLIGRLNPDNRRALERAAQRCLQRGHHFVEIEHLLLELLDIEAGDFALLLPRFGLERDALTAEINKALDLFKGGSTRTPALSSHTLGLLEDAVVQASVLGIDSIRSGLLLLALIDRDERRSLLLNSASSLLRIPREALRTNLLEWTENSREHVGPRSASAGNSAPRQDSVLDQYTQDLTADAHAGRIDPIVGRDGEIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAAGDVPPSLQEVSLRVLDLGLLQAGAGVKGEFEQRLKGVIDAVRSADKPIILFIDEAHTLIGAGGAEGGSDAANLLKPALARGELRTLAATTWMEYKKYFEKDPALARRFQLVQVEEPDEITAVEMLRGVAAKLEQHHGVQVLDAAIHEAVKLSHRYISGRQLPDKAISVLDTACARVALGQHDVPPPLESLRHRQNSLKDEVERLRREQATGLDHRERITLLEAESKTNVQAIRELETRWSEERVAVRELLETRRELLALSESADSDKPDEATDSRIDHLAAELLRLEAGLDAIRQDDPLVPEQVDAKTVAAVIAGWTGIPVGKMLADEAHAVRTLGTRMGQRVMGQSTALNTIAQRLQAYRAGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGERNLISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGLMEDGTGLVVDFKNTVMLATSNVGAELLLDTPVSQIGSEAFNEALHKVLLQAFRPAFLARMTVVAYRPLDEATLEGIVLAKLEKLRGRYKAATGKQFEFDSGIVKAVLAKCSAAGARDVENVLMTQVTGKLAEWVLE
>CP027477.1|AVX89729.1|3560426_3561452_+|type-VI-secretion-system-baseplate-subunit-TssG
MATPSRHAPVALTLSQRLRRDPQAFEWLQALLLLEREQPQAESLGSGTSPQAEALKLRGPLTPLFPTSQIENLHEEPGQPLTLGTPMFGLGGPDGPLPYAYQEWLQQRARAKDHAPAEFLDLFQHRLLSLLYKVMRKHRVALGFVTPGASPVQAQLRALTGLLPKALQERQAVPDCAVLACTALFADGRRSLAGFAATVREQFGVPVALSACQGAWREIPPASRSVIKSGGRNLQLGRTAVAGSRVWDEHAGIRLTIGPLPSTQAIRFLPDGEAHPALASLAALYFGPDLDVTLVLLVRGAGPMKLGRQAPVLLSWNGGLQRQASLAVQRIETRLRQLEIT
>CP027477.1|AVX89739.1|3572067_3572325_-|DUF1652-domain-containing-protein
MMNLAQLRASLEQSFSPLACECSVDGDHSLTVKLYHRESGQVDLVISGLKLNELRTPEAVAALIDELRYELESNSLRAARDPDMA
>CP027477.1|AVX89740.1|3572459_3573956_-|PAS-domain-S-box-protein
MSQEVLTTETNRRQLQQIIAGLSDGVILLELDQSILWANEAALAMHGVSRIGELGTNADEYAKRFTLRYRNNHLLPPENYPISRVARCEVFSDLLVEMSAMDDPERVWVHSVRSMVLTDREGQPESLVLIMSDVTDWANAEQRFEKTFNANPAPAVICRLSDLRYIKVNPGFLEMTGYTRDQVIGTSAYEIDVFDQAEKKDLAIQRLRDVATIPQMQAQLRLPDGGSKQVIVAGQPLVLNDEDCMLFSFVDMELRHKAEVALRQSEERFAKAFRLTPVPILICSADEQQVIDVNQAFLDTLAYDSDEVVGKTVTQLHFIDDDGARARLLNALAKSGRIDRVDVRVRRKDAELLECAVSADTVNIQDTPCYLLVLMDITERKRTELELVAAIEEVMKDASWFSRTLIEKLANVKKVNSPQLPSVSFTDLTARERDVLGLICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWARERGLFSGERGAKGQR
>CP027477.1|AVX89741.1|3574142_3575036_-|LysR-family-transcriptional-regulator
MDLRLLRYFMALADELHFGRAAERLHICQPPLSQQIRLLEEELGTPLFERSHHRVELTAAGQMLKEQAPLVFEQLERALDLTRQTGRGQLGELEIGMISSVMVGVLPKALHLFRERYPQVNWRLHEMTPAAQVKALKEKRIDACVFRVGYDDPLLRNELLIYEPIRVVMPADHPLASRELLAPADLAQEPFVALELKQSRFANFLYQCCVQAGFTPQIRQQVIEVQTLLSLVRAGFGVALLPASIEQLAPAGLVFRRLTPALPEVPLYATYRADDASPVLRLFLDTLRELVETSDQP
>CP027477.1|AVX89742.1|3575042_3577256_-|aldehyde-oxidase
MSLRDDTLLEPSRRVFLKQAATVASGLAIALYLPSGSAASDSRTLAPATEFEPNAWVRIFPDGTVKLVVHKHDSGTGTQTALAACVAEELDVNPMTVQVITPEDPFFETYIHPVWKVFSTGGSTSVSLEYERLRMAGATARALLIAAAAKQWKVSPDSCSTEEGRVVHLPSKRSLGYGELVGVAAHLPAPAHVTLKDPAQFKYIGKLRHKRDATAKVCGRFKYSIDVQLPGMLVAVIQRAPVVGAKVLGVDSAAALQVPGVRQVLAIPGRPDVLGGNLEGVAVLADTFWAAQQGRKLLEIKWSDSPLAGFDSAELGKAQAAAISDPKSQTIKAMTHGDVDAQWSHAAQLIEADYHMPYKVQNPLEPICITAQVKDNAITYWGGVQVPSSALEAAQTVCGIAKDKVTINELVSGGSFGAREAKYWLFEVAYLAQQTGVPVKLLNSREDEMHALFNHPATLHRVKGALDAQGKLNALQLHAVSPASPEQWEPGYFERPDHMDYSTTEAITAWDFAYRPPHLQLNWVKHESQVPSGWYRSVSFIPNVFAVESFMDELAHAAGADPLAFRLANMQERPRHVAVLKQAAERAGWGQPLPPGTALGIATFQGYSSFIAVVARVATVDGKPKVEKLTCVVDCGLAVSPGGVEEQIYGGLMWGLGHALFDRLDIQQGRVVQSNFHDYRVTRMSDMPATDIVVLDGEPGKPGGVGELGSPSVAPAIANALFALTGVRQRSTPLSLG
>CP027477.1|AVX89743.1|3577255_3577720_-|(2Fe-2S)-binding-protein
MIAFTVNGERRELDEASPSMPLLWVLRDQLKLTGTKFGCGMGLCGACTVHLDGVAVRSCQLPLAAVAGHSITTIEGLSPSENHPLQLAWVAEDVPQCGYCQSGQIMSAAALLNTGAAVTDDSIRNAMSGNICRCGTYGRINKAIKRAANAPKEA
>CP027477.1|AVX89744.1|3577838_3578729_+|LysR-family-transcriptional-regulator
MYKRYPSVQSMSAFIHAARSGSFSSAARKLDLTHSAISQQIRALEDFIGQPLFVREGGGSNLTDAGQLFASVLADGLAQIDRALSSVKNRSVAQRLTLDVDSELAQSWLNPRLPELLDGLPDYEVTLLSMPRSDRSSFERVDLALRYGYGDWDDCEMTQICGDRVLAVASPALLERYGLQLPLSPAQILELPLLGYTRRSWIPWLDAAGMPPVEPAARVIFDNAANLIAAAEAGVGAGLVRGLLAADALRSGRLVALNEAQITAHYNLYAVWPHGQAERVAPVVEVIRQLALHTQH
>CP027477.1|AVX89745.1|3579061_3579991_+|amidohydrolase
MIIDISCYPTDLVDLAWRHDGDPFTGERLLEMMDGPYMVNGKPRRIDKAFIQPPQGNTIYTWTDGELSGRESIDAYMAYTLKMVQTYPDRFIGCFVYNPRCGVENGVEAIERYVKEHGFKMVQMQANMHAYRPDRALDWVRPCFEKCAELGIPVKLHTGDGPYSIPSEWVPMIKEFPNVNFIMAHFGVQTGGVYVFEPMQWAMELPNVYCESGWCLQSRIVEFAKVLPTHKILFGTDTPPNEPGMWLRLLEVLCHEPPQGLNLDEDTLEEYLGNNTARMIGLEPTPPPRSVSEAEAQLKRPVTTQLARS
>CP027477.1|AVX89746.1|3579995_3580901_+|amidohydrolase
MIIDTHLHPTNLVDEAWRHTGEPFTGERMLKLMDGPYIINGKPRRIDMGFIQPPPGNTGYRDGNRRGREGVRDYMSYVAELCVKYPDRFIGNFNFNPRWGPENGAAELEFHIKEYGFKMLKLHANMHGYRPDRALDWLRPAMKVCAKYNIVVLIHTGDGPYTIPTMFYPIIREFPMVNFIIGHFGIQTGGNYSFEAFWMAMDTPNVYCESGWCFQSRIVEFAKELPRNKIVFGTDSPPNEPGMWLRELEVLCSPAPQGLGIDEDHLEDYLGNNIARLCGIEPTPPPKDLVEADIRLTTTYL
>CP027477.1|AVX89747.1|3581250_3582636_+|UbiD-family-decarboxylase
MTRSTLGDSQDFHVFTDAYRREYPDDVLTITQPVSADQDVTALVDALAAQGRDPLLICENVGGLKVPVATNLFASRTRIARLFGVTPAQLHETFQRRANQPIAPRYVESGPVLDEVFEGEAVDLALLPMLKHFDSDRGPYITNAIIIAEDPLTGIANMSYHRSMRHARQSLATSLHSRGHLWRMLQTARERGEELRVAMVVGAHPLFMLAAAARLPYGSDERAVAGGLFGAPLELVKTPRYGIGVPAYAEFVLEGAIDPTAYAEEGPFGEFSGYSSDRSTNNVLRVDTLLRRKDAWLVDVMGGRYAEHLTLARLPREAEMSEKLKARFPAVTAVHYPNSGTHFHCYVALDQSRDGEARQIMLALLGWDPYLKSVIAVDSDIDITDDSQVLWALATHFQPHLDLFMIDGLPGSPLDPSSSVNGTTSRMGLDATRGSGFDGIKAQLAQDVLERARQRLKGLAL
>CP027477.1|AVX89748.1|3582632_3583277_+|aromatic-acid-decarboxylase
MNRQRMVVGISGASGFVYGMRLLELLAELNIESHLIISRAALLTMAHETDYKLADVTALASHYHRADDVAAGIASGSFRCLGMVVAPCSMRTLAEIATGTSSGLIGRAADVTLKERRTLVLMARETPLTLAHLRNMTAVTEMGGIIAPPVPAFYARPESLAQMVDHSLGRVLDLFGLDAGVARRWKEHTNPNVEMNTCGEGIHPRPTAQQSQNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1249722 : 1358262

110

Pseudomonas_phage(46.3%)

lysis,tRNA,plate,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX87822.1\|1249722_1250541_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	3.0e-08	33.9
AVX87823.1\|1250672_1251083_-	Fe-S metabolism protein SufE	NA	NA	NA	NA
AVX87824.1\|1251079_1252285_-	cysteine desulfurase CsdA	Q2XUY6	environmental_halophage	1.7e-68	35.8
AVX87825.1\|1252418_1253453_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
AVX87826.1\|1253485_1253848_-	ArsC family reductase	NA	NA	NA	NA
AVX87827.1\|1254141_1255773_+	Na+/H+ antiporter	NA	NA	NA	NA
AVX87828.1\|1255794_1256442_-	hypothetical protein	NA	NA	NA	NA
AVX87829.1\|1256703_1257903_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
AVX87830.1\|1258109_1260812_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
AVX87831.1\|1260853_1261636_-	type I methionyl aminopeptidase	NA	NA	NA	NA
AVX87832.1\|1262009_1262747_+	30S ribosomal protein S2	NA	NA	NA	NA
AVX87833.1\|1262950_1263814_+	elongation factor Ts	NA	NA	NA	NA
AVX87834.1\|1264025_1264769_+	UMP kinase	NA	NA	NA	NA
AVX87835.1\|1264765_1265323_+	ribosome recycling factor	NA	NA	NA	NA
AVX87836.1\|1265336_1266092_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.4e-17	38.1
AVX87837.1\|1266091_1266898_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AVX87838.1\|1266894_1268085_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
AVX87839.1\|1268139_1269492_+	zinc metallopeptidase RseP	NA	NA	NA	NA
AVX87840.1\|1269566_1271942_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
AVX87841.1\|1271987_1272491_+	hypothetical protein	NA	NA	NA	NA
AVX87842.1\|1272494_1273550_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
AVX87843.1\|1273656_1274097_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AVX87844.1\|1274093_1274870_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AVX87845.1\|1274872_1276003_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
AVX87846.1\|1276011_1276638_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.3e-27	39.5
AVX87847.1\|1276714_1280236_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	2.7e-199	37.0
AVX87848.1\|1280375_1281323_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
AVX87849.1\|1281448_1282777_+\|tRNA	tRNA lysidine(34) synthetase TilS	M1I2W1	Paramecium_bursaria_Chlorella_virus	6.9e-07	25.9
AVX87850.1\|1283051_1284683_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.1e-158	53.5
AVX87851.1\|1284687_1285533_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.1e-49	42.4
AVX87852.1\|1285689_1286979_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.6e-136	59.0
AVX87853.1\|1287150_1287429_+	cell division protein FtsB	NA	NA	NA	NA
AVX87854.1\|1287425_1288133_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AVX87855.1\|1288221_1289118_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVX87856.1\|1289235_1290348_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.0e-33	29.1
AVX87857.1\|1290414_1291260_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AVX87858.1\|1291304_1291778_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AVX87859.1\|1291774_1292833_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AVX87860.1\|1292820_1293570_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.0e-68	52.6
AVX87861.1\|1293569_1294247_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-43	49.8
AVX87862.1\|1294459_1295341_+	LysM peptidoglycan-binding domain-containing protein	A0A0S2SXL7	Bacillus_phage	6.6e-06	33.3
AVX87863.1\|1295446_1296457_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.1e-34	35.8
AVX87864.1\|1296805_1297129_+	hypothetical protein	NA	NA	NA	NA
AVX87865.1\|1297069_1297393_-	ferredoxin family protein	NA	NA	NA	NA
AVX87866.1\|1297556_1300139_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	3.6e-28	22.5
AVX87867.1\|1300348_1301083_+	transcriptional regulator	B5TK58	Pseudomonas_phage	1.1e-128	92.6
AVX87868.1\|1301608_1301950_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	7.1e-49	84.5
AVX87869.1\|1302022_1302544_+	hypothetical protein	NA	NA	NA	NA
AVX87870.1\|1302547_1303156_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	5.5e-44	48.2
AVX87871.1\|1303170_1303503_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.4e-36	69.1
AVX87872.1\|1303499_1304495_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	1.5e-110	63.5
AVX87873.1\|1304491_1305127_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	2.3e-45	53.8
AVX87874.1\|1305127_1307905_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	1.2e-88	34.9
AVX87875.1\|1307915_1308425_+	hypothetical protein	A0A1S5R1J2	Pseudomonas_phage	1.4e-19	48.5
AVX87876.1\|1308528_1308714_+	hypothetical protein	NA	NA	NA	NA
AVX87877.1\|1308716_1309883_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	1.2e-124	57.2
AVX87878.1\|1309882_1310389_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	2.8e-25	35.7
AVX87879.1\|1310622_1311204_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	7.2e-25	35.3
AVX87880.1\|1311332_1313585_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
AVX87881.1\|1313584_1313968_+	hypothetical protein	A0A2H4JAC8	uncultured_Caudovirales_phage	1.2e-33	52.0
AVX87882.1\|1313960_1314173_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	2.5e-20	67.1
AVX87883.1\|1314183_1315212_+\|tail	phage tail protein	B0ZSH3	Halomonas_phage	2.1e-99	52.9
AVX87884.1\|1315384_1315969_+	hypothetical protein	B5TK65	Pseudomonas_phage	6.9e-84	78.4
AVX87885.1\|1315965_1316145_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	6.2e-20	83.3
AVX87886.1\|1316144_1317641_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	2.0e-260	91.8
AVX87887.1\|1317708_1318056_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	1.5e-57	92.2
AVX87888.1\|1318052_1318349_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	2.8e-41	90.8
AVX87889.1\|1318479_1320378_+\|tail	phage tail protein	B5TK70	Pseudomonas_phage	4.1e-69	56.7
AVX87890.1\|1320364_1321603_+	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	1.7e-164	69.9
AVX87891.1\|1321605_1322655_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	1.6e-155	78.8
AVX87892.1\|1322808_1323318_+\|plate	phage baseplate assembly protein V	B5TK73	Pseudomonas_phage	3.4e-79	88.8
AVX87893.1\|1323317_1323716_+	hypothetical protein	B5TK74	Pseudomonas_phage	2.5e-69	95.5
AVX87894.1\|1323705_1324752_+\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	1.1e-153	81.2
AVX87895.1\|1324739_1325339_+\|tail	phage tail protein	B5TK76	Pseudomonas_phage	3.0e-103	89.4
AVX87896.1\|1325353_1326505_+\|tail	phage tail protein	B5TK77	Pseudomonas_phage	5.6e-154	69.6
AVX87897.1\|1326501_1327017_+\|tail	phage tail protein	B5TK78	Pseudomonas_phage	6.7e-51	65.5
AVX87898.1\|1327154_1328252_+\|tail	phage tail protein	B5TK79	Pseudomonas_phage	3.8e-120	61.7
AVX87899.1\|1328259_1328826_+\|tail	phage tail protein	B5TK80	Pseudomonas_phage	1.4e-57	58.4
AVX87900.1\|1328849_1329776_+	hypothetical protein	B5TK77	Pseudomonas_phage	4.5e-21	75.8
AVX87901.1\|1329775_1330243_+	hypothetical protein	NA	NA	NA	NA
AVX87902.1\|1330280_1331201_+\|tail	phage tail protein	B5TK81	Pseudomonas_phage	1.2e-34	38.9
AVX87903.1\|1331203_1331644_+	hypothetical protein	NA	NA	NA	NA
AVX87904.1\|1331676_1332879_+	carbohydrate-binding protein CenC	B5TK77	Pseudomonas_phage	8.4e-20	67.1
AVX87905.1\|1332888_1333107_+	hypothetical protein	NA	NA	NA	NA
AVX87906.1\|1333140_1333707_+	lysozyme	B5TK83	Pseudomonas_phage	1.1e-83	80.3
AVX87907.1\|1333685_1334204_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	1.8e-56	70.6
AVX87908.1\|1334272_1334773_+	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	1.6e-73	85.5
AVX87909.1\|1334856_1335915_+	DNA recombination/repair protein RecA	A0A0S2MVG1	Bacillus_phage	4.5e-110	58.9
AVX87910.1\|1335923_1336394_+	recombination regulator RecX	NA	NA	NA	NA
AVX87911.1\|1336450_1337569_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
AVX87912.1\|1337927_1338122_+	hypothetical protein	NA	NA	NA	NA
AVX87913.1\|1338122_1338548_-	hypothetical protein	NA	NA	NA	NA
AVX87914.1\|1338734_1339484_+	DTW domain-containing protein	NA	NA	NA	NA
AVX87915.1\|1339708_1340359_+	DNA-binding response regulator	NA	NA	NA	NA
AVX87916.1\|1340433_1340796_+	diacylglycerol kinase	NA	NA	NA	NA
AVX87917.1\|1340792_1341719_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVX87918.1\|1341852_1342632_+	ferredoxin--NADP reductase	NA	NA	NA	NA
AVX87919.1\|1342814_1343513_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AVX87920.1\|1343522_1343990_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.3e-36	50.0
AVX87921.1\|1344062_1344773_-	RNA-binding protein	NA	NA	NA	NA
AVX87922.1\|1344930_1345404_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AVX87923.1\|1345605_1346943_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AVX87924.1\|1346961_1347216_+	hypothetical protein	NA	NA	NA	NA
AVX87925.1\|1347232_1349134_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	2.4e-77	34.6
AVX87926.1\|1349332_1349536_-	hypothetical protein	NA	NA	NA	NA
AVX87927.1\|1349575_1350868_-	virulence factor family protein	NA	NA	NA	NA
AVX87928.1\|1350867_1353507_-	hypothetical protein	NA	NA	NA	NA
AVX87929.1\|1354428_1355490_+	DNA polymerase IV	NA	NA	NA	NA
AVX87930.1\|1355575_1356529_-	hypothetical protein	NA	NA	NA	NA
AVX87931.1\|1356546_1358262_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

2377657 : 2383916

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX88777.1\|2377657_2378938_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.7e-98	53.9
AVX88778.1\|2378938_2380333_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AVX88779.1\|2380449_2381451_-	glutathione-dependent reductase	NA	NA	NA	NA
AVX88780.1\|2381542_2382544_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.4e-161	83.5
AVX88781.1\|2382540_2382876_-	sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	5.2e-44	76.6
AVX88782.1\|2382872_2383166_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.4e-31	67.7
AVX88783.1\|2383165_2383522_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.5e-38	67.5
AVX92260.1\|2383523_2383916_-	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.2e-52	78.3

DBSCAN-SWA_3

3852848 : 3910661

Pseudomonas_phage(50.91%)

lysis,integrase,terminase,head,tail

attL 3856462:3856521|attR 3909839:3909903

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX89964.1\|3852848_3854660_-	ABC transporter permease	F2Y165	Organic_Lake_phycodnavirus	1.3e-16	26.8
AVX89965.1\|3854863_3855277_+	VOC family protein	NA	NA	NA	NA
AVX89966.1\|3855333_3855663_-	hypothetical protein	NA	NA	NA	NA
AVX89967.1\|3855829_3856105_+	hypothetical protein	NA	NA	NA	NA
AVX92309.1\|3856175_3856379_+	hypothetical protein	NA	NA	NA	NA
3856462:3856521	attL	NA	NA	NA	NA
AVX89968.1\|3856721_3856931_+	hypothetical protein	A0A1B0VP78	Pseudomonas_phage	2.1e-11	56.9
AVX89969.1\|3857008_3857335_+	hypothetical protein	NA	NA	NA	NA
AVX89970.1\|3857306_3857831_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	3.5e-55	70.3
AVX89971.1\|3857830_3858253_-	cell wall hydrolase	A0A2D1GNI1	Pseudomonas_phage	1.2e-61	76.6
AVX89972.1\|3858311_3858752_-	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.3e-15	45.9
AVX89973.1\|3859776_3860457_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	1.5e-42	42.0
AVX89974.1\|3860456_3860765_-	hypothetical protein	NA	NA	NA	NA
AVX89975.1\|3860780_3863816_-	host specificity protein J	A0A059VFW9	Pseudomonas_phage	0.0e+00	70.3
AVX89976.1\|3863812_3864211_-	hypothetical protein	A0A059VK01	Pseudomonas_phage	1.0e-62	82.6
AVX89977.1\|3864213_3864816_-	hypothetical protein	A0A059VA31	Pseudomonas_phage	5.0e-106	93.0
AVX89978.1\|3864815_3865400_-	hypothetical protein	A0A059VJR9	Pseudomonas_phage	1.1e-89	85.1
AVX89979.1\|3865429_3865729_-	hypothetical protein	NA	NA	NA	NA
AVX89980.1\|3865725_3869667_-\|tail	phage tail tape measure protein	A0A059VJZ1	Pseudomonas_phage	1.2e-94	34.4
AVX89981.1\|3869727_3870228_-	hypothetical protein	NA	NA	NA	NA
AVX89982.1\|3870319_3870832_-	DNA-binding protein	A0A0H5ARR4	Pseudomonas_phage	5.3e-56	55.0
AVX89983.1\|3870828_3871746_-	hypothetical protein	A0A2D1GLJ3	Escherichia_phage	1.1e-24	52.0
AVX89984.1\|3872107_3872491_+	hypothetical protein	NA	NA	NA	NA
AVX89985.1\|3872571_3872817_+	hypothetical protein	NA	NA	NA	NA
AVX89986.1\|3873019_3873241_-	hypothetical protein	NA	NA	NA	NA
AVX92310.1\|3873303_3873498_-	hypothetical protein	NA	NA	NA	NA
AVX89987.1\|3873563_3874079_-	hypothetical protein	NA	NA	NA	NA
AVX89988.1\|3874126_3875299_-	Ig domain-containing protein	A0A059VG08	Pseudomonas_phage	5.0e-41	35.5
AVX89989.1\|3875388_3875787_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AVX89990.1\|3875783_3876164_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.7e-30	52.9
AVX89991.1\|3876166_3876532_-	glutamate 5-kinase	A0A059VA70	Pseudomonas_phage	3.7e-19	40.0
AVX89992.1\|3876534_3876912_-	hypothetical protein	A0A2H4J0N2	uncultured_Caudovirales_phage	4.3e-31	58.9
AVX89993.1\|3877141_3878110_-	hypothetical protein	A0A0H5ARK0	Pseudomonas_phage	2.3e-140	79.2
AVX89994.1\|3878119_3878866_-	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	1.4e-89	72.0
AVX89995.1\|3878988_3880047_-\|head	phage head morphogenesis protein	A0A2H4J831	uncultured_Caudovirales_phage	8.9e-98	49.7
AVX89996.1\|3880050_3881427_-	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	1.1e-191	74.8
AVX89997.1\|3881430_3882918_-\|terminase	terminase	A0A2H4J2I1	uncultured_Caudovirales_phage	1.4e-253	85.0
AVX89998.1\|3882919_3883453_-	hypothetical protein	A0A0H5AUE2	Pseudomonas_phage	2.3e-54	70.3
AVX89999.1\|3883409_3884087_-	hypothetical protein	NA	NA	NA	NA
AVX90000.1\|3884210_3884642_-	proteasome subunit beta	A0A2H4J821	uncultured_Caudovirales_phage	2.9e-63	86.4
AVX92311.1\|3884696_3884903_-	hypothetical protein	NA	NA	NA	NA
AVX90001.1\|3884951_3885224_-	hypothetical protein	A0A1B0VME7	Pseudomonas_phage	6.7e-34	77.5
AVX90002.1\|3885225_3885549_-	peptidase M48, Ste24p	A0A1B0VME9	Pseudomonas_phage	3.7e-47	93.5
AVX90003.1\|3885704_3885902_+	hypothetical protein	NA	NA	NA	NA
AVX90004.1\|3885872_3886166_-	hypothetical protein	NA	NA	NA	NA
AVX90005.1\|3886623_3887304_-	hypothetical protein	A0A2H4J9G7	uncultured_Caudovirales_phage	4.1e-120	96.9
AVX90006.1\|3887300_3887882_-	hypothetical protein	A0A0U4KL68	Pseudomonas_phage	3.4e-67	63.2
AVX90007.1\|3888045_3888462_-	NinB family protein	A0A2H4J1T9	uncultured_Caudovirales_phage	2.7e-74	96.4
AVX90008.1\|3888619_3888925_-	hypothetical protein	A0A2H4JCF4	uncultured_Caudovirales_phage	5.1e-22	94.4
AVX90009.1\|3889202_3889496_-	hypothetical protein	NA	NA	NA	NA
AVX90010.1\|3889650_3890379_-	Replication protein P	A0A2H4J1T4	uncultured_Caudovirales_phage	3.9e-121	95.6
AVX90011.1\|3890375_3891110_-	hypothetical protein	A0A2I2MUI8	uncultured_Caudovirales_phage	1.3e-111	80.8
AVX92312.1\|3891109_3891835_-	phage antirepressor protein	A0A2H4J5H6	uncultured_Caudovirales_phage	1.1e-38	44.9
AVX90012.1\|3892002_3892215_-	hypothetical protein	A0A2H4J8V2	uncultured_Caudovirales_phage	1.1e-26	91.2
AVX90013.1\|3892234_3892435_-	hypothetical protein	A0A2H4J528	uncultured_Caudovirales_phage	3.3e-30	100.0
AVX90014.1\|3892464_3892704_-	hypothetical protein	A0A2H4J0V8	uncultured_Caudovirales_phage	1.6e-23	69.6
AVX90015.1\|3892787_3893639_+	propanediol utilization protein	A0A2D1GNH0	Pseudomonas_phage	1.5e-63	46.4
AVX90016.1\|3893642_3893855_+	hypothetical protein	NA	NA	NA	NA
AVX90017.1\|3893908_3894199_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVX90018.1\|3894179_3894419_+	hypothetical protein	NA	NA	NA	NA
AVX90019.1\|3894473_3894992_+	hypothetical protein	NA	NA	NA	NA
AVX90020.1\|3894988_3895747_+	DUF1828 domain-containing protein	NA	NA	NA	NA
AVX90021.1\|3895848_3896163_-	hypothetical protein	A0A2D1GND3	Pseudomonas_phage	2.2e-20	58.2
AVX90022.1\|3896693_3896906_+	hypothetical protein	NA	NA	NA	NA
AVX90023.1\|3896888_3897068_-	hypothetical protein	NA	NA	NA	NA
AVX92313.1\|3897278_3897494_+	hypothetical protein	A0A2H4JG58	uncultured_Caudovirales_phage	4.8e-11	45.7
AVX90024.1\|3897773_3898055_-	DUF2622 domain-containing protein	NA	NA	NA	NA
AVX90025.1\|3898503_3898764_+	hypothetical protein	A0A1B0VMC2	Pseudomonas_phage	1.9e-30	74.4
AVX90026.1\|3898784_3899009_+	hypothetical protein	NA	NA	NA	NA
AVX90027.1\|3899028_3899457_+	hypothetical protein	A0A2H4J9E7	uncultured_Caudovirales_phage	8.4e-47	71.1
AVX90028.1\|3899453_3899645_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	3.0e-12	57.4
AVX90029.1\|3899641_3899863_+	hypothetical protein	A0A2H4J1S2	uncultured_Caudovirales_phage	1.9e-34	97.3
AVX90030.1\|3900020_3901178_+	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	1.6e-76	77.9
AVX90031.1\|3901188_3901947_+	ERF family protein	K4NWX3	Pseudomonas_phage	3.8e-50	58.8
AVX90032.1\|3901943_3902711_+	recombinase	A0A0M3LPU0	Mannheimia_phage	2.2e-13	28.3
AVX90033.1\|3902707_3902950_+	hypothetical protein	A0A2H4J1H1	uncultured_Caudovirales_phage	1.1e-24	73.8
AVX90034.1\|3902946_3903411_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	4.4e-41	53.9
AVX90035.1\|3903492_3903804_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	5.9e-34	68.9
AVX90036.1\|3903859_3904336_+	hypothetical protein	NA	NA	NA	NA
AVX90037.1\|3904456_3905053_+	DUF1566 domain-containing protein	A0A1J0GUX3	Halomonas_phage	1.3e-05	28.0
AVX90038.1\|3905110_3905464_+	four helix bundle protein	NA	NA	NA	NA
AVX90039.1\|3905734_3906397_+	hypothetical protein	A0A2H4J7W7	uncultured_Caudovirales_phage	1.4e-19	44.6
AVX90040.1\|3906487_3907090_+	hypothetical protein	A0A2H4IY33	uncultured_phage	1.7e-37	41.2
AVX90041.1\|3907186_3907609_-	hypothetical protein	NA	NA	NA	NA
AVX90042.1\|3907784_3908267_+	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	1.4e-42	59.9
AVX90043.1\|3908590_3909775_+\|integrase	integrase	A0A059VF45	Pseudomonas_phage	4.0e-208	90.6
AVX90044.1\|3910021_3910378_-	MerR family transcriptional regulator	NA	NA	NA	NA
3909839:3909903	attR	NA	NA	NA	NA
AVX90045.1\|3910358_3910661_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9

DBSCAN-SWA_4

3949424 : 4046003

uncultured_Caudovirales_phage(60.0%)

capsid,lysis,tRNA,plate,integrase,protease,portal,terminase,head,tail,holin

attL 3940590:3940624|attR 4051084:4051118

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3940590:3940624	attL	NA	NA	NA	NA
AVX90083.1\|3949424_3950279_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AVX90084.1\|3950491_3953125_-	peptidoglycan-binding protein	NA	NA	NA	NA
AVX90085.1\|3953333_3954344_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AVX90086.1\|3954558_3955671_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AVX90087.1\|3955737_3956820_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
AVX90088.1\|3956874_3957642_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AVX90089.1\|3957761_3958406_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
AVX90090.1\|3958419_3959838_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
AVX90091.1\|3959979_3960870_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVX90092.1\|3960938_3964217_+	histidine kinase	A0A127AWB9	Bacillus_phage	1.0e-14	31.7
AVX90093.1\|3964303_3965995_+	molecular chaperone HscC	M4R062	Micromonas_pusilla_virus	1.4e-76	38.0
AVX90094.1\|3965991_3968688_-	molecular chaperone DnaJ	NA	NA	NA	NA
AVX90095.1\|3968684_3969380_-	hypothetical protein	NA	NA	NA	NA
AVX90096.1\|3969566_3970013_-	heat-shock protein	A0A1D8KN82	Synechococcus_phage	2.9e-18	37.0
AVX90097.1\|3970134_3971094_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
AVX90098.1\|3971248_3971686_-	acyl-CoA thioesterase	NA	NA	NA	NA
AVX90099.1\|3971732_3972566_-	alpha/beta hydrolase	NA	NA	NA	NA
AVX90100.1\|3972596_3973136_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AVX90101.1\|3974091_3975573_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
AVX90102.1\|3975801_3976851_+	HlyD family secretion protein	NA	NA	NA	NA
AVX90103.1\|3976840_3978391_+	EmrB/QacA family drug resistance transporter	NA	NA	NA	NA
AVX90104.1\|3978506_3980522_-	excinuclease ABC subunit B	NA	NA	NA	NA
AVX90105.1\|3980859_3982056_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
AVX90106.1\|3982273_3982474_+	hypothetical protein	NA	NA	NA	NA
AVX90107.1\|3982829_3984353_-	uracil permease	NA	NA	NA	NA
AVX90108.1\|3984607_3984892_+	BrnT family toxin	NA	NA	NA	NA
AVX90109.1\|3984895_3985228_+	hypothetical protein	NA	NA	NA	NA
AVX90110.1\|3985230_3986058_-	arylamine N-acetyltransferase	NA	NA	NA	NA
AVX90111.1\|3986158_3986953_-	exodeoxyribonuclease III	NA	NA	NA	NA
AVX90112.1\|3987183_3987462_+	hypothetical protein	NA	NA	NA	NA
AVX90113.1\|3987553_3989122_-	GGDEF domain-containing protein	NA	NA	NA	NA
AVX90114.1\|3989345_3989870_-	hypothetical protein	NA	NA	NA	NA
AVX90115.1\|3989866_3990595_-	alpha/beta hydrolase	NA	NA	NA	NA
AVX90116.1\|3990598_3991096_-	hypothetical protein	Q8W6S2	Burkholderia_virus	1.4e-05	29.7
AVX90117.1\|3991231_3991897_-	ribonuclease	NA	NA	NA	NA
AVX90118.1\|3992062_3992533_+	hypothetical protein	NA	NA	NA	NA
AVX90119.1\|3992635_3994342_+	copper oxidase	NA	NA	NA	NA
AVX92316.1\|3994353_3995220_+	copper resistance protein B	NA	NA	NA	NA
AVX90120.1\|3995250_3995625_+	copper resistance protein CopC	NA	NA	NA	NA
AVX90121.1\|3995628_3996498_+	copper resistance protein CopD	NA	NA	NA	NA
AVX92317.1\|3996556_3997342_+	ArtI protein	NA	NA	NA	NA
AVX90122.1\|3997474_3997690_-	hypothetical protein	NA	NA	NA	NA
AVX90123.1\|3997792_3998572_-	diguanylate phosphodiesterase	NA	NA	NA	NA
AVX90124.1\|3998707_4000642_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.9e-23	63.1
AVX90125.1\|4001084_4001447_-	hypothetical protein	NA	NA	NA	NA
AVX90126.1\|4002593_4002917_+	ferredoxin	NA	NA	NA	NA
AVX90127.1\|4002992_4003253_+	hypothetical protein	NA	NA	NA	NA
AVX90128.1\|4003549_4003765_+	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	3.0e-21	74.2
AVX90129.1\|4003888_4004779_+\|protease	serine protease	A0A2H4JE36	uncultured_Caudovirales_phage	3.9e-30	33.1
AVX90130.1\|4005157_4007752_-	hypothetical protein	NA	NA	NA	NA
AVX90131.1\|4007806_4008232_-	GtrA family protein	NA	NA	NA	NA
AVX90132.1\|4008471_4009443_-	glycosyltransferase	B9UDL7	Salmonella_phage	1.3e-34	30.8
AVX90133.1\|4009784_4010579_-	restriction endonuclease subunit M	C7BGE1	Burkholderia_phage	7.1e-100	66.8
AVX90134.1\|4010729_4011272_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	2.6e-53	68.4
AVX90135.1\|4011253_4011817_-	lysozyme	B5TK83	Pseudomonas_phage	5.4e-78	75.4
AVX90136.1\|4011865_4012912_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.4e-151	75.4
AVX90137.1\|4013009_4013216_-\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.8e-22	70.1
AVX90138.1\|4013190_4014036_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.2e-115	73.6
AVX90139.1\|4014045_4016940_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	3.9e-103	39.2
AVX90140.1\|4017090_4017690_-\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	2.5e-17	51.1
AVX90141.1\|4017704_4018208_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.8e-64	73.1
AVX90142.1\|4018220_4019387_-\|tail	phage tail protein	A0A2H4J869	uncultured_Caudovirales_phage	1.5e-167	76.6
AVX92318.1\|4019491_4019734_-	hypothetical protein	B5TK82	Pseudomonas_phage	2.4e-14	52.2
AVX90143.1\|4021429_4022035_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.3e-77	68.8
AVX90144.1\|4022036_4022918_-\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	4.5e-103	66.6
AVX90145.1\|4022914_4023241_-\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	9.5e-35	67.0
AVX90146.1\|4023246_4023525_-	hypothetical protein	A0A2H4J885	uncultured_Caudovirales_phage	3.4e-09	57.4
AVX92319.1\|4023581_4024115_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.0e-50	73.8
AVX90147.1\|4024144_4024660_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.7e-60	62.6
AVX90148.1\|4024652_4025318_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	3.6e-81	69.9
AVX90149.1\|4025314_4025635_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	3.1e-38	69.5
AVX90150.1\|4025637_4026633_-\|capsid	major capsid protein E	A0A2H4J890	uncultured_Caudovirales_phage	5.5e-166	86.7
AVX90151.1\|4026695_4027040_-\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.5e-43	79.8
AVX90152.1\|4027036_4028191_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.2e-145	72.3
AVX90153.1\|4028187_4029669_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	5.3e-242	84.2
AVX90154.1\|4029668_4029875_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	4.0e-23	79.4
AVX90155.1\|4029876_4031892_-\|terminase	terminase	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	85.3
AVX90156.1\|4031896_4032454_-\|terminase	terminase small subunit	A0A2H4JG15	uncultured_Caudovirales_phage	2.7e-61	68.9
AVX90157.1\|4032596_4032941_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	6.7e-47	85.2
AVX90158.1\|4033469_4033829_-	hypothetical protein	NA	NA	NA	NA
AVX90159.1\|4033821_4036038_-	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	9.3e-190	47.1
AVX90160.1\|4036027_4036258_-	conjugal transfer protein TraR	NA	NA	NA	NA
AVX90161.1\|4036250_4036874_-	hypothetical protein	NA	NA	NA	NA
AVX90162.1\|4037100_4037361_-	hypothetical protein	A0A0D4DBS7	Acinetobacter_phage	3.8e-10	47.4
AVX90163.1\|4037440_4038172_+	peptidase S24	A5VW98	Enterobacteria_phage	7.1e-30	38.0
AVX90164.1\|4038182_4040675_-	helicase	NA	NA	NA	NA
AVX90165.1\|4041020_4041611_+	hypothetical protein	NA	NA	NA	NA
AVX90166.1\|4041621_4041906_+	DNA-binding protein	NA	NA	NA	NA
AVX90167.1\|4042064_4042382_+	transcriptional regulator	NA	NA	NA	NA
AVX90168.1\|4042440_4042860_+	hypothetical protein	NA	NA	NA	NA
AVX90169.1\|4043488_4043764_+	Pyocin activator protein PrtN	I6NSR8	Burkholderia_phage	1.7e-24	64.6
AVX90170.1\|4043765_4044926_-\|integrase	integrase	L7TP61	Pseudomonas_virus	4.8e-145	67.1
AVX90171.1\|4044992_4046003_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
4051084:4051118	attR	NA	NA	NA	NA

DBSCAN-SWA_5

5683130 : 5733200

Burkholderia_phage(40.0%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX91585.1\|5683130_5683634_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
AVX91586.1\|5683879_5684767_+	acyltransferase	NA	NA	NA	NA
AVX91587.1\|5684768_5685326_-	hypothetical protein	NA	NA	NA	NA
AVX91588.1\|5685474_5686110_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AVX91589.1\|5686106_5686781_+	anti-sigma factor	NA	NA	NA	NA
AVX91590.1\|5686988_5687300_+	hypothetical protein	NA	NA	NA	NA
AVX91591.1\|5687354_5688554_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.4e-11	29.7
AVX91592.1\|5688754_5689612_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AVX91593.1\|5689734_5690367_-	sarcosine oxidase subunit gamma	NA	NA	NA	NA
AVX91594.1\|5690510_5693528_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
AVX91595.1\|5693524_5693854_-	sarcosine oxidase subunit delta family protein	NA	NA	NA	NA
AVX91596.1\|5693868_5695119_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
AVX91597.1\|5695139_5696393_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	5.4e-102	53.0
AVX91598.1\|5696677_5697388_-	conjugal transfer protein TraX	NA	NA	NA	NA
AVX91599.1\|5697514_5698555_+	low specificity L-threonine aldolase	NA	NA	NA	NA
AVX91600.1\|5698722_5699547_+	short chain dehydrogenase	NA	NA	NA	NA
AVX91601.1\|5699654_5700755_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AVX92370.1\|5700826_5700982_+	protein GbcA	NA	NA	NA	NA
AVX91602.1\|5701037_5702330_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA
AVX91603.1\|5702445_5703690_-	metallophosphoesterase	NA	NA	NA	NA
AVX91604.1\|5703715_5705584_-	hypothetical protein	NA	NA	NA	NA
AVX91605.1\|5705792_5709245_-\|holin	choline dehydrogenase	NA	NA	NA	NA
AVX91606.1\|5710285_5711056_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AVX91607.1\|5711071_5712292_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
AVX91608.1\|5712291_5714241_-	(Fe-S)-binding protein	NA	NA	NA	NA
AVX91609.1\|5714386_5716447_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
AVX91610.1\|5716462_5716993_-	hydrocarbon binding protein	NA	NA	NA	NA
AVX91611.1\|5717071_5718049_-	membrane dipeptidase	NA	NA	NA	NA
AVX92371.1\|5718283_5718685_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AVX91612.1\|5718898_5719153_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	2.6e-24	65.5
AVX91613.1\|5719136_5719460_+	transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	9.8e-32	68.5
AVX91614.1\|5719488_5719905_+	DUF3010 domain-containing protein	NA	NA	NA	NA
AVX91615.1\|5719989_5720934_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AVX91616.1\|5721126_5722071_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AVX91617.1\|5722146_5723034_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
AVX91618.1\|5723190_5724156_+	carnitine 3-dehydrogenase	NA	NA	NA	NA
AVX91619.1\|5724060_5724282_-	hypothetical protein	NA	NA	NA	NA
AVX91620.1\|5724280_5724757_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
AVX91621.1\|5724779_5725943_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
AVX91622.1\|5726294_5726558_+	hypothetical protein	NA	NA	NA	NA
AVX91623.1\|5726647_5727751_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AVX91624.1\|5727785_5728043_-	hypothetical protein	NA	NA	NA	NA
AVX91625.1\|5728352_5729729_-	L-serine ammonia-lyase	NA	NA	NA	NA
AVX91626.1\|5730165_5731113_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AVX91627.1\|5731179_5732025_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AVX91628.1\|5732021_5733200_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-25	37.1

DBSCAN-SWA_6

6139131 : 6189245

Bacillus_phage(40.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX91975.1\|6139131_6140463_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AVX91976.1\|6140465_6140966_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AVX91977.1\|6140971_6142165_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AVX91978.1\|6142183_6142324_-	type VI secretion protein	NA	NA	NA	NA
AVX91979.1\|6142464_6142683_+	hypothetical protein	NA	NA	NA	NA
AVX91980.1\|6142657_6144178_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AVX91981.1\|6144188_6146846_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	7.0e-91	30.0
AVX91982.1\|6146857_6147865_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AVX91983.1\|6147828_6149616_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AVX91984.1\|6149643_6150096_-	hypothetical protein	NA	NA	NA	NA
AVX91985.1\|6150456_6150822_-	hypothetical protein	NA	NA	NA	NA
AVX91986.1\|6150818_6151496_-	hypothetical protein	NA	NA	NA	NA
AVX91987.1\|6151497_6152022_-	hypothetical protein	NA	NA	NA	NA
AVX91988.1\|6152033_6152441_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AVX91989.1\|6153951_6154455_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AVX91990.1\|6154487_6156050_-	type VI secretion system protein TssA	NA	NA	NA	NA
AVX91991.1\|6159391_6160693_+\|transposase	ISL3-like element IS1411 family transposase	A0A2H4PDF8	Mycobacterium_phage	9.4e-150	60.4
AVX91992.1\|6160693_6161509_+	hypothetical protein	NA	NA	NA	NA
AVX91993.1\|6161501_6162191_+	hypothetical protein	NA	NA	NA	NA
AVX91994.1\|6162177_6162882_+	hypothetical protein	NA	NA	NA	NA
AVX91995.1\|6162895_6163252_+	hypothetical protein	NA	NA	NA	NA
AVX91996.1\|6163346_6163622_-	HU family DNA-binding protein	A4JWM7	Burkholderia_virus	6.0e-14	50.6
AVX91997.1\|6163812_6164961_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
AVX91998.1\|6164981_6165149_-	rubredoxin	NA	NA	NA	NA
AVX91999.1\|6165347_6165908_+	chorismate--pyruvate lyase	NA	NA	NA	NA
AVX92000.1\|6165907_6166798_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AVX92001.1\|6166921_6167299_-	hypothetical protein	NA	NA	NA	NA
AVX92002.1\|6167450_6168140_+	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	7.4e-37	39.1
AVX92003.1\|6168178_6169501_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	1.5e-30	33.8
AVX92004.1\|6169624_6170965_+	HlyC/CorC family transporter	NA	NA	NA	NA
AVX92005.1\|6171049_6171946_-	DUF4124 domain-containing protein	A0A2K9VGT1	Pontimonas_phage	1.1e-11	38.4
AVX92006.1\|6172132_6173086_-	response regulator	NA	NA	NA	NA
AVX92007.1\|6173264_6174026_-	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA
AVX92008.1\|6174096_6174930_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.9e-12	30.5
AVX92009.1\|6175114_6176785_-	phosphate ABC transporter permease PtsA	NA	NA	NA	NA
AVX92010.1\|6176800_6179083_-	phosphate ABC transporter permease	NA	NA	NA	NA
AVX92011.1\|6179288_6180293_-	phosphate-binding protein	NA	NA	NA	NA
AVX92012.1\|6180480_6181539_+	zinc peptidase	A0A0A7RTT7	Clostridium_phage	1.8e-26	30.2
AVX92013.1\|6181535_6182027_+	nucleotide-binding protein	NA	NA	NA	NA
AVX92014.1\|6182044_6183343_-	MFS transporter	NA	NA	NA	NA
AVX92388.1\|6183719_6184124_+	acyl-CoA thioesterase	NA	NA	NA	NA
AVX92015.1\|6184182_6185082_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
AVX92016.1\|6185208_6185745_-	DUF3299 domain-containing protein	NA	NA	NA	NA
AVX92017.1\|6185847_6186093_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AVX92018.1\|6186210_6187293_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AVX92019.1\|6187303_6187795_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.0e-20	41.1
AVX92020.1\|6188273_6189245_+\|transposase	IS110 family transposase	A0A1B1P7S0	Bacillus_phage	2.8e-05	33.3

DBSCAN-SWA_7

6341788 : 6396385

uncultured_virus(16.67%)

transposase,integrase

attL 6351753:6351769|attR 6385756:6385772

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX92125.1\|6341788_6343456_-\|transposase	transposase	NA	NA	NA	NA
AVX92126.1\|6344930_6347099_-\|transposase	transposase	NA	NA	NA	NA
AVX92127.1\|6348387_6348804_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVX92128.1\|6349012_6349798_+	enoyl-CoA hydratase	NA	NA	NA	NA
AVX92129.1\|6349847_6350945_+	hypothetical protein	NA	NA	NA	NA
AVX92130.1\|6350926_6352462_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	3.3e-117	49.1
6351753:6351769	attL	NA	NA	NA	NA
AVX92131.1\|6352857_6353178_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AVX92132.1\|6353339_6354413_+	hypothetical protein	NA	NA	NA	NA
AVX92133.1\|6354409_6355171_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
AVX92134.1\|6356414_6356798_+	hypothetical protein	NA	NA	NA	NA
AVX92135.1\|6356949_6357423_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVX92136.1\|6357784_6358984_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	3.2e-11	28.5
AVX92137.1\|6359160_6360495_+	MFS transporter	NA	NA	NA	NA
AVX92138.1\|6360530_6361808_+	outer membrane porin, OprD family	NA	NA	NA	NA
AVX92139.1\|6362161_6363115_+	oxidoreductase	NA	NA	NA	NA
AVX92393.1\|6364362_6364977_+	hypothetical protein	NA	NA	NA	NA
AVX92140.1\|6365009_6366056_+	DUF2236 domain-containing protein	NA	NA	NA	NA
AVX92141.1\|6367545_6369066_+	aldehyde dehydrogenase	NA	NA	NA	NA
AVX92142.1\|6371577_6372153_+	hypothetical protein	NA	NA	NA	NA
AVX92143.1\|6372169_6372775_+	hypothetical protein	NA	NA	NA	NA
AVX92144.1\|6372760_6373531_-	hypothetical protein	NA	NA	NA	NA
AVX92145.1\|6373603_6373999_+	DNA-binding protein	NA	NA	NA	NA
AVX92146.1\|6373979_6374993_+	hypothetical protein	NA	NA	NA	NA
AVX92147.1\|6375001_6375643_+	hypothetical protein	NA	NA	NA	NA
AVX92148.1\|6376922_6377711_-	NAD-dependent deacylase	A0A023MHA7	Escherichia_phage	5.4e-15	29.7
AVX92149.1\|6377916_6378579_+	hypothetical protein	NA	NA	NA	NA
AVX92150.1\|6378728_6379040_+	hypothetical protein	NA	NA	NA	NA
AVX92394.1\|6379053_6379359_+	hypothetical protein	NA	NA	NA	NA
AVX92151.1\|6379382_6380729_-\|transposase	transposase	NA	NA	NA	NA
AVX92152.1\|6382366_6383566_+\|integrase	integrase	A0A221SAN4	Ralstonia_phage	4.6e-34	30.2
AVX92153.1\|6383562_6384732_+	DUF1016 domain-containing protein	A0A0U2BZN7	Salmonella_phage	2.1e-52	64.9
AVX92154.1\|6385067_6385577_+	DNA repair protein RadC	NA	NA	NA	NA
AVX92155.1\|6385821_6387777_-	hypothetical protein	NA	NA	NA	NA
6385756:6385772	attR	NA	NA	NA	NA
AVX92156.1\|6387786_6389070_-	hypothetical protein	NA	NA	NA	NA
AVX92157.1\|6389425_6389647_+	hypothetical protein	NA	NA	NA	NA
AVX92158.1\|6389702_6391484_-	hypothetical protein	NA	NA	NA	NA
AVX92159.1\|6391480_6391771_-	XRE family transcriptional regulator	NA	NA	NA	NA
AVX92160.1\|6392014_6392365_+	hypothetical protein	NA	NA	NA	NA
AVX92161.1\|6392674_6393433_+	hypothetical protein	NA	NA	NA	NA
AVX92162.1\|6393516_6393798_+	DNA-binding protein	NA	NA	NA	NA
AVX92163.1\|6393824_6394682_+	RepA replication protein	NA	NA	NA	NA
AVX92164.1\|6394696_6394939_+	hypothetical protein	NA	NA	NA	NA
AVX92165.1\|6394935_6395574_+	ATPase	K7R2R7	Vibrio_phage	1.3e-30	36.7
AVX92395.1\|6395570_6395843_+	chromosome partitioning protein ParB	NA	NA	NA	NA
AVX92166.1\|6395839_6396385_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP027478

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

199147 : 206601

Acinetobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX92626.1\|199147_199906_+	trehalose phosphatase	A0A172Q0Q4	Acinetobacter_phage	2.5e-09	26.8
AVX92627.1\|199898_200993_+	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	33.4
AVX92628.1\|200992_201940_+	citrate lyase	NA	NA	NA	NA
AVX92629.1\|201939_202668_+	HAD-IB family hydrolase	NA	NA	NA	NA
AVX92630.1\|202670_203264_+	TerD family protein	A0A2I7QY07	Vibrio_phage	1.8e-23	36.8
AVX92631.1\|203260_204451_+	tellurium resistance protein TerA	NA	NA	NA	NA
AVX92632.1\|204498_204948_+	Tellurite resistance TerB	Q1MVI3	Enterobacteria_phage	1.3e-10	30.2
AVX92633.1\|204959_205994_+	tellurium resistance protein TerC	K7QKE8	Escherichia_phage	3.1e-71	47.2
AVX92634.1\|206022_206601_+	TerD family protein	A0A2L1IWC0	Streptomyces_phage	5.7e-06	31.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027480

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP027477

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP027478

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection