CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028520	Lelliottia sp. WB101 chromosome, complete genome	0 crisprs	WYL,DEDDh,cas3,csa3,DinG	0	0	9	0
CP028521	Lelliottia sp. WB101 plasmid unnamed1	0 crisprs	cas14j,RT	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1513672 : 1521323

Thermobifida_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVY97468.1\|1513672_1514527_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.4e-05	28.4
AVY97469.1\|1514572_1515064_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
AVY97470.1\|1515146_1515434_-	ribosome hibernation promoting factor	A0A0M7QCF2	Escherichia_phage	6.1e-09	42.0
AVY97471.1\|1515456_1516890_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
AVY97472.1\|1516937_1517663_-	lipopolysaccharide ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.4e-22	28.4
AVY97473.1\|1517669_1518224_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
AVY97474.1\|1518192_1518768_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
AVY97475.1\|1518764_1519331_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	2.5e-54	74.8
AVY97476.1\|1519345_1520332_-	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	5.6e-38	30.7
AVY97477.1\|1520345_1521323_-	calcium/sodium antiporter	A0A2D1GNI8	Pseudoalteromonas_phage	1.5e-06	23.3

DBSCAN-SWA_2

1633765 : 1659950

Erwinia_phage(39.29%)

tRNA,tail,integrase,plate

attL 1627966:1627982|attR 1643086:1643102

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1627966:1627982	attL	NA	NA	NA	NA
AVY97585.1\|1633765_1634800_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	4.5e-195	95.3
AVY97586.1\|1634799_1635375_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	8.6e-63	59.4
AVY97587.1\|1635508_1635772_+	hypothetical protein	A0A218M4I5	Erwinia_phage	3.4e-43	97.7
AVY97588.1\|1635888_1636227_+	hypothetical protein	A0A218M4I7	Erwinia_phage	1.9e-38	70.5
AVY97589.1\|1636293_1636521_+	DUF2732 domain-containing protein	NA	NA	NA	NA
AVY97590.1\|1636520_1636742_+	hypothetical protein	A0A0M4S5Q7	Salmonella_phage	6.0e-25	76.1
AVZ00236.1\|1636743_1638795_+	replication protein	A0A218M4H2	Erwinia_phage	0.0e+00	90.5
AVY97591.1\|1638971_1639415_+	DinI family protein	A0A218M4I0	Erwinia_phage	3.1e-52	78.3
AVY97592.1\|1639748_1639952_+\|tail	phage tail protein	A0A218M4L8	Erwinia_phage	2.0e-22	71.6
AVY97593.1\|1640146_1640656_+	glycoside hydrolase	A0A218M4K3	Erwinia_phage	4.6e-68	72.6
AVY97594.1\|1640652_1641078_+	protein lysB	O80310	Escherichia_phage	3.2e-30	54.8
AVY97595.1\|1641173_1641641_+\|tail	phage tail protein	S4TTA5	Salmonella_phage	4.1e-47	58.1
AVY97596.1\|1641874_1642516_+\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	4.9e-91	78.4
AVY97597.1\|1642512_1642863_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	2.0e-38	69.0
AVY97598.1\|1642909_1643776_+\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	1.6e-129	82.3
1643086:1643102	attR	NA	NA	NA	NA
AVY97599.1\|1643768_1644299_+\|tail	phage tail protein I	Q37841	Escherichia_phage	5.8e-90	85.8
AVZ00237.1\|1645108_1646389_+	hypothetical protein	F1BUK3	Cronobacter_phage	4.5e-27	67.3
AVY97600.1\|1646390_1646810_+\|tail	phage tail protein	Q9MCR5	Enterobacteria_phage	9.5e-11	60.6
AVY97601.1\|1646928_1648122_+\|tail	phage tail protein	S4TRX2	Salmonella_phage	2.6e-186	82.3
AVY97602.1\|1648134_1648653_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.5e-77	80.8
AVY97603.1\|1648710_1649004_+	hypothetical protein	A0A0F7LDQ8	Escherichia_phage	1.7e-27	72.4
AVY97604.1\|1649036_1649159_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	8.5e-13	84.6
AVY97605.1\|1649148_1651596_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	4.5e-177	47.9
AVY97606.1\|1651609_1652074_+\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	3.7e-56	67.5
AVY97607.1\|1652070_1653240_+	hypothetical protein	Q6K1G4	Salmonella_virus	1.7e-150	69.1
AVY97608.1\|1653306_1653507_+	late control protein B	A0A2I8TV89	Erwinia_phage	7.4e-22	71.2
AVY97609.1\|1653872_1654379_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
AVY97610.1\|1654456_1656304_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
AVY97611.1\|1656329_1656440_-	RNA polymerase subunit sigma	NA	NA	NA	NA
AVY97612.1\|1656510_1658256_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-75	38.7
AVY97613.1\|1658493_1658709_-	30S ribosomal protein S21	NA	NA	NA	NA
AVY97614.1\|1658936_1659950_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.8e-109	59.2

DBSCAN-SWA_3

1781980 : 1837202

Cronobacter_phage(33.33%)

protease,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVY97705.1\|1781980_1782403_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AVY97706.1\|1782407_1784228_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AVZ00244.1\|1784194_1785238_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AVY97707.1\|1785254_1786553_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AVY97708.1\|1786549_1787074_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AVY97709.1\|1787076_1788420_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AVZ00245.1\|1788481_1789231_+	hypothetical protein	NA	NA	NA	NA
AVY97710.1\|1789239_1791888_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	6.9e-83	31.3
AVY97711.1\|1791884_1792583_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
AVY97712.1\|1792582_1793980_+	type VI secretion system protein TssA	NA	NA	NA	NA
AVY97713.1\|1794055_1797520_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AVY97714.1\|1797530_1798859_+	hypothetical protein	NA	NA	NA	NA
AVY97715.1\|1798880_1799360_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AVY97716.1\|1799550_1800324_-	hypothetical protein	NA	NA	NA	NA
AVY97717.1\|1800893_1801607_-	hypothetical protein	NA	NA	NA	NA
AVY97718.1\|1801797_1803933_+	ornithine decarboxylase	NA	NA	NA	NA
AVY97719.1\|1804005_1804698_-	response regulator	NA	NA	NA	NA
AVY97720.1\|1804687_1806325_-	sensor histidine kinase	NA	NA	NA	NA
AVY97721.1\|1806670_1808032_+	malate permease	NA	NA	NA	NA
AVY97722.1\|1808049_1808913_+	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase	NA	NA	NA	NA
AVY97723.1\|1808926_1809961_+	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
AVY97724.1\|1809977_1810271_+	citrate lyase acyl carrier protein	NA	NA	NA	NA
AVY97725.1\|1810267_1811143_+	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
AVY97726.1\|1812675_1813215_+	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
AVY97727.1\|1813192_1813996_+	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
AVY97728.1\|1814032_1814707_-	cephalosporin hydroxylase	A0A1E1EVB8	Acanthamoeba_castellanii_mimivirus	4.6e-15	36.9
AVY97729.1\|1814867_1816124_-	MFS transporter	NA	NA	NA	NA
AVY97730.1\|1816354_1817431_-	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
AVY97731.1\|1817486_1817759_-	oxidative damage protection protein	NA	NA	NA	NA
AVY97732.1\|1817785_1818844_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
AVY97733.1\|1818982_1819702_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AVY97734.1\|1819698_1820025_+	DUF469 domain-containing protein	NA	NA	NA	NA
AVY97735.1\|1820074_1820794_+	DUF2884 domain-containing protein	NA	NA	NA	NA
AVY97736.1\|1820852_1821995_-	YggW family oxidoreductase	NA	NA	NA	NA
AVY97737.1\|1821987_1822581_-	XTP/dITP diphosphatase	NA	NA	NA	NA
AVY97738.1\|1822584_1822881_-	YggU family protein	NA	NA	NA	NA
AVY97739.1\|1822877_1823444_-	YggT family protein	NA	NA	NA	NA
AVY97740.1\|1823462_1824167_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
AVY97741.1\|1824185_1825166_+	type IV pili twitching motility protein PilT	NA	NA	NA	NA
AVY97742.1\|1825171_1825588_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
AVY97743.1\|1825587_1826148_-	YqgE/AlgH family protein	NA	NA	NA	NA
AVY97744.1\|1826265_1827213_-	glutathione synthase	NA	NA	NA	NA
AVY97745.1\|1827233_1827965_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
AVY97746.1\|1828048_1828756_-	deoxyribonuclease I	NA	NA	NA	NA
AVY97747.1\|1828850_1829348_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
AVY97748.1\|1829463_1830861_-	sugar porter family MFS transporter	NA	NA	NA	NA
AVY97749.1\|1831298_1832450_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	8.1e-129	63.2
AVZ00246.1\|1833098_1833245_+	virulence promoting factor	NA	NA	NA	NA
AVY97750.1\|1833253_1835230_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
AVY97751.1\|1835415_1836336_+	agmatinase	NA	NA	NA	NA
AVY97752.1\|1836443_1837202_-\|protease	metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_4

2120104 : 2176830

Cronobacter_phage(78.95%)

portal,terminase,tail,capsid,head,tRNA,holin,integrase

attL 2161565:2161579|attR 2179637:2179651

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVY97990.1\|2120104_2122684_+	hypothetical protein	A0A076FHE1	Aureococcus_anophage	2.0e-10	23.6
AVY97991.1\|2124266_2125418_-	hypothetical protein	NA	NA	NA	NA
AVY97992.1\|2125436_2126495_-\|integrase	integrase	F1BUN9	Cronobacter_phage	3.5e-171	84.6
AVY97993.1\|2126494_2127112_-	Repressor protein CI	F1BUN8	Cronobacter_phage	9.5e-84	74.6
AVY97994.1\|2127221_2127410_+	hypothetical protein	F1BUN7	Cronobacter_phage	2.8e-15	57.1
AVY97995.1\|2127466_2127970_+	hypothetical protein	F1BUN6	Cronobacter_phage	8.0e-57	69.5
AVY97996.1\|2127979_2128174_+	hypothetical protein	NA	NA	NA	NA
AVY97997.1\|2128163_2128592_+	hypothetical protein	F1BUN5	Cronobacter_phage	4.9e-23	48.4
AVY97998.1\|2128591_2128993_+	hypothetical protein	F1BUN2	Cronobacter_phage	3.2e-40	55.6
AVY97999.1\|2129060_2129294_+	hypothetical protein	NA	NA	NA	NA
AVY98000.1\|2129284_2130142_+	adenine methylase	F1BUN1	Cronobacter_phage	4.3e-143	89.0
AVY98001.1\|2130138_2132160_+	replication endonuclease	F1BUM9	Cronobacter_phage	5.3e-301	74.0
AVY98002.1\|2132278_2132491_+	hypothetical protein	NA	NA	NA	NA
AVY98003.1\|2132464_2132788_-	transcriptional regulator	F1BUM8	Cronobacter_phage	1.6e-45	88.5
AVY98004.1\|2132784_2133837_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	2.0e-158	77.4
AVY98005.1\|2133833_2135609_-\|terminase	terminase	F1BUM5	Cronobacter_phage	2.7e-288	82.1
AVY98006.1\|2135781_2136579_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	6.7e-66	54.6
AVY98007.1\|2136637_2137660_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.8e-156	80.6
AVY98008.1\|2137663_2138392_+\|terminase	terminase	F1BUM0	Cronobacter_phage	6.5e-84	66.8
AVY98009.1\|2138369_2138567_+	hypothetical protein	Q8W634	Enterobacteria_phage	8.3e-10	59.3
AVY98010.1\|2138665_2139118_+\|head	head completion protein	F1BUL8	Cronobacter_phage	8.5e-58	75.3
AVY98011.1\|2139114_2139621_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	8.1e-65	68.3
AVY98012.1\|2139617_2140325_+	hypothetical protein	F1BUL6	Cronobacter_phage	5.2e-102	78.2
AVY98013.1\|2140321_2141449_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	6.4e-171	81.1
AVY98014.1\|2141445_2141901_+	DUF2597 domain-containing protein	F1BUL4	Cronobacter_phage	7.0e-60	74.2
AVY98015.1\|2141910_2142207_+\|holin	holin	C7BGD7	Burkholderia_phage	1.2e-15	46.8
AVY98016.1\|2142203_2142545_+	hypothetical protein	F1BUL3	Cronobacter_phage	1.0e-47	86.1
AVY98017.1\|2142544_2142913_+	hypothetical protein	F1BUL2	Cronobacter_phage	2.0e-20	50.5
AVZ00257.1\|2142854_2143049_+	hypothetical protein	F1BUL1	Cronobacter_phage	5.7e-11	55.9
AVY98018.1\|2143032_2143293_+	hypothetical protein	A5X9I7	Aeromonas_virus	8.1e-21	61.6
AVY98019.1\|2143480_2145571_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.5e-269	69.1
AVY98020.1\|2145567_2145897_+	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	9.3e-38	72.5
AVY98021.1\|2145893_2147078_+	hypothetical protein	F1BUK6	Cronobacter_phage	1.8e-176	79.3
AVY98022.1\|2147070_2147658_+	hypothetical protein	F1BUK5	Cronobacter_phage	5.8e-91	81.0
AVY98023.1\|2147668_2149648_+	hypothetical protein	F1BUK3	Cronobacter_phage	1.9e-149	79.2
AVY98024.1\|2149649_2150072_+\|tail	phage tail protein	M1FJ98	Enterobacteria_phage	4.4e-24	50.4
AVY98025.1\|2150061_2150787_+	hypothetical protein	F1BUK1	Cronobacter_phage	7.0e-62	50.2
AVY98026.1\|2150758_2151307_+	hypothetical protein	F1BUJ9	Cronobacter_phage	8.7e-65	71.4
AVY98027.1\|2151309_2152986_+	hypothetical protein	F1BUJ7	Cronobacter_phage	1.2e-202	63.0
AVY98028.1\|2153038_2153323_+	hypothetical protein	NA	NA	NA	NA
AVY98029.1\|2153663_2154512_-	hypothetical protein	NA	NA	NA	NA
AVY98030.1\|2155073_2155556_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.6e-28	45.5
AVY98031.1\|2155679_2156156_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AVY98032.1\|2156145_2156433_+	RnfH family protein	NA	NA	NA	NA
AVY98033.1\|2156496_2156838_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AVY98034.1\|2156819_2157002_-	hypothetical protein	NA	NA	NA	NA
AVY98035.1\|2156976_2158638_-	DNA repair protein RecN	NA	NA	NA	NA
AVY98036.1\|2158723_2159602_-	NAD(+) kinase	NA	NA	NA	NA
AVY98037.1\|2159699_2160317_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AVY98038.1\|2160366_2161656_-	magnesium/cobalt efflux protein	NA	NA	NA	NA
2161565:2161579	attL	NA	NA	NA	NA
AVZ00258.1\|2161674_2162466_-	inner membrane protein YpjD	NA	NA	NA	NA
AVY98039.1\|2162632_2163994_+	signal recognition particle protein	NA	NA	NA	NA
AVY98040.1\|2164263_2164512_+	30S ribosomal protein S16	NA	NA	NA	NA
AVY98041.1\|2164527_2165067_+	ribosome maturation factor RimM	NA	NA	NA	NA
AVY98042.1\|2165098_2165866_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AVY98043.1\|2165910_2166258_+	50S ribosomal protein L19	NA	NA	NA	NA
AVY98044.1\|2166387_2166792_+	DUF2946 domain-containing protein	NA	NA	NA	NA
AVY98045.1\|2166849_2168214_+	PepSY domain-containing protein	NA	NA	NA	NA
AVY98046.1\|2168217_2168703_-	hypothetical protein	NA	NA	NA	NA
AVY98047.1\|2168718_2169939_-	diguanylate cyclase	NA	NA	NA	NA
AVY98048.1\|2169931_2170525_-	DUF4154 domain-containing protein	NA	NA	NA	NA
AVY98049.1\|2170612_2170987_-	DUF2799 domain-containing protein	NA	NA	NA	NA
AVY98050.1\|2171207_2172278_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.8e-89	51.2
AVY98051.1\|2172288_2173410_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AVY98052.1\|2173470_2174343_+	gluconolactonase	NA	NA	NA	NA
AVY98053.1\|2174339_2175500_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AVZ00259.1\|2175606_2175654_-	hypothetical protein	NA	NA	NA	NA
AVY98054.1\|2175837_2176830_-\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	1.2e-99	54.2
2179637:2179651	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2183292 : 2245879

Cronobacter_phage(46.67%)

terminase,tail,capsid,head,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVY98063.1\|2183292_2183613_-	transcriptional regulator	F1BUM8	Cronobacter_phage	1.4e-25	60.4
AVY98064.1\|2184651_2186457_-	hypothetical protein	F1BUM5	Cronobacter_phage	2.9e-181	52.7
AVY98065.1\|2186612_2187668_+\|capsid	phage capsid protein	R9TRS3	Vibrio_phage	3.0e-29	41.3
AVY98066.1\|2187692_2188739_+\|capsid	phage major capsid protein, P2 family	A0A1L5C2B0	Pseudoalteromonas_phage	3.8e-77	45.0
AVY98067.1\|2188742_2189450_+\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	4.6e-26	39.1
AVY98068.1\|2189552_2190026_+\|head	head completion protein	F1BUL8	Cronobacter_phage	1.0e-37	54.0
AVY98069.1\|2190022_2190517_+\|tail	phage tail protein	NA	NA	NA	NA
AVY98070.1\|2190503_2191199_+	hypothetical protein	F1BUL6	Cronobacter_phage	8.2e-52	52.2
AVY98071.1\|2191195_2192389_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	9.7e-101	50.5
AVY98072.1\|2192392_2192848_+	DUF2597 domain-containing protein	A5X9I1	Aeromonas_virus	3.9e-42	55.6
AVY98073.1\|2192851_2193163_+	hypothetical protein	NA	NA	NA	NA
AVY98074.1\|2193149_2193488_+	hypothetical protein	F1BUL3	Cronobacter_phage	1.2e-35	69.3
AVY98075.1\|2193791_2194016_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.0e-08	47.6
AVY98076.1\|2193988_2194258_+	hypothetical protein	A5X9I7	Aeromonas_virus	1.3e-13	47.6
AVY98077.1\|2194275_2194476_+	hypothetical protein	NA	NA	NA	NA
AVY98078.1\|2194472_2196407_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	6.2e-105	36.1
AVY98079.1\|2196403_2196733_+	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	2.9e-23	56.4
AVY98080.1\|2196729_2197911_+	hypothetical protein	F1BUK6	Cronobacter_phage	4.7e-140	62.0
AVY98081.1\|2197900_2199571_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.7e-42	53.1
AVY98082.1\|2199574_2201017_+	hypothetical protein	F1BUK3	Cronobacter_phage	3.8e-67	43.7
AVY98083.1\|2201026_2201716_+	hypothetical protein	NA	NA	NA	NA
AVY98084.1\|2201708_2202257_+	hypothetical protein	A5X9J7	Aeromonas_virus	8.5e-28	45.0
AVY98085.1\|2202253_2203918_+	hypothetical protein	F1BUJ7	Cronobacter_phage	5.6e-115	40.3
AVY98086.1\|2204381_2204747_+	hypothetical protein	NA	NA	NA	NA
AVY98087.1\|2205065_2205305_+	DNA polymerase V	I6PD82	Cronobacter_phage	1.4e-22	58.2
AVY98088.1\|2205333_2205819_-	hypothetical protein	NA	NA	NA	NA
AVY98089.1\|2206113_2206455_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AVY98090.1\|2206722_2207460_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AVY98091.1\|2207590_2208571_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
AVY98092.1\|2208567_2209299_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AVY98093.1\|2209428_2212002_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.4e-125	34.9
AVY98094.1\|2217756_2219052_+	alpha-ketoglutarate transporter	Q6JIH2	Burkholderia_virus	5.3e-44	28.9
AVY98095.1\|2219048_2219372_-	hypothetical protein	NA	NA	NA	NA
AVY98096.1\|2219416_2220772_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AVY98097.1\|2220882_2223546_-	protein lysine acetyltransferase	NA	NA	NA	NA
AVY98098.1\|2223581_2224280_-	DTW domain-containing protein	NA	NA	NA	NA
AVY98099.1\|2224355_2224775_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	7.0e-14	36.5
AVY98100.1\|2224981_2226079_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AVY98101.1\|2226145_2226835_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.8e-54	51.6
AVY98102.1\|2227149_2227533_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.8e-32	73.0
AVY98103.1\|2227586_2228918_-	ATP-dependent RNA helicase SrmB	A0A1V0SIR5	Klosneuvirus	9.6e-49	31.7
AVY98104.1\|2229049_2229787_+\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
AVY98105.1\|2229771_2231391_-	L-aspartate oxidase	NA	NA	NA	NA
AVZ00261.1\|2231362_2231497_-	L-aspartate oxidase	NA	NA	NA	NA
AVY98106.1\|2231816_2232392_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AVY98107.1\|2232423_2233077_+	anti-sigma-E factor RseA	NA	NA	NA	NA
AVY98108.1\|2233076_2234030_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AVY98109.1\|2234026_2234503_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
AVY98110.1\|2234688_2236488_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	1.0e-24	26.1
AVY98111.1\|2236504_2237467_+	signal peptidase I	NA	NA	NA	NA
AVY98112.1\|2237688_2238369_+	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	3.7e-20	38.3
AVY98113.1\|2238365_2239271_+	GTPase Era	NA	NA	NA	NA
AVY98114.1\|2239282_2239990_+	DNA repair protein RecO	NA	NA	NA	NA
AVY98115.1\|2240017_2240749_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AVY98116.1\|2240748_2241129_+	holo-ACP synthase	NA	NA	NA	NA
AVY98117.1\|2241125_2241386_-	4Fe-4S dicluster domain-containing protein	A0A1B1IWY9	uncultured_Mediterranean_phage	4.2e-17	50.0
AVY98118.1\|2241442_2242291_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AVY98119.1\|2242407_2243301_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
AVY98120.1\|2243314_2244676_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AVY98121.1\|2244679_2245315_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
AVY98122.1\|2245339_2245879_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	7.6e-05	38.6

DBSCAN-SWA_6

2680884 : 2687204

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVY98470.1\|2680884_2682276_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.8e-19	30.7
AVY98471.1\|2682453_2683350_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	6.2e-44	42.6
AVY98472.1\|2683739_2684825_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.3e-100	53.4
AVY98473.1\|2684824_2685724_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.2e-28	34.2
AVY98474.1\|2685773_2686652_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.5e-108	65.2
AVY98475.1\|2686655_2687204_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-49	54.2

DBSCAN-SWA_7

3580389 : 3613639

Enterobacteria_phage(29.41%)

tail,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVY99275.1\|3580389_3581658_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.2e-231	92.7
AVY99276.1\|3581661_3582081_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	1.7e-36	57.5
AVY99277.1\|3582790_3583384_-	hypothetical protein	NA	NA	NA	NA
AVY99278.1\|3583584_3584775_-	hypothetical protein	C6ZR20	Salmonella_phage	1.2e-103	53.8
AVY99279.1\|3584927_3586196_-\|tail	phage tail protein	K7P6T0	Enterobacteria_phage	4.7e-138	60.5
AVY99280.1\|3586254_3586488_-	cor protein	E4WL42	Enterobacteria_phage	8.9e-35	88.3
AVY99281.1\|3586598_3587273_-	hypothetical protein	K7PGX6	Enterobacteria_phage	6.0e-108	87.9
AVY99282.1\|3587272_3587575_-	hypothetical protein	E4WL40	Enterobacteria_phage	3.8e-46	88.0
AVY99283.1\|3587576_3591032_-	host specificity protein	K7P840	Enterobacteria_phage	0.0e+00	86.6
AVY99284.1\|3591090_3591531_-	hypothetical protein	NA	NA	NA	NA
AVY99285.1\|3591719_3592334_-\|tail	phage tail protein	K7PH91	Enterobacterial_phage	4.4e-57	63.0
AVZ00324.1\|3592386_3592794_-	hypothetical protein	NA	NA	NA	NA
AVY99286.1\|3592880_3593606_-	peptidase P60	K7P7M8	Enterobacteria_phage	2.3e-129	89.7
AVY99287.1\|3593608_3594364_-\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	5.2e-116	77.6
AVY99288.1\|3594360_3594708_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	3.2e-36	59.1
AVY99289.1\|3594744_3597798_-\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	2.2e-149	39.7
AVY99290.1\|3597794_3598109_-	hypothetical protein	I6PD79	Cronobacter_phage	5.8e-21	64.7
AVY99291.1\|3598105_3598417_-	hypothetical protein	I6PDG2	Cronobacter_phage	9.1e-35	67.0
AVY99292.1\|3598480_3599152_-\|tail	phage tail protein	I6PBN6	Cronobacter_phage	9.7e-50	46.8
AVY99293.1\|3599222_3599633_-	hypothetical protein	I6PDJ8	Cronobacter_phage	2.5e-32	54.3
AVY99294.1\|3599629_3600214_-	hypothetical protein	G8C7Q1	Escherichia_phage	4.5e-51	55.3
AVY99295.1\|3600215_3600566_-	hypothetical protein	I6PD77	Cronobacter_phage	1.1e-33	56.0
AVY99296.1\|3600565_3601048_-	hypothetical protein	A0A1W6JS23	Salmonella_phage	1.9e-10	33.8
AVY99297.1\|3601365_3602316_-	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	6.9e-134	75.2
AVY99298.1\|3602328_3603102_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.4e-68	59.6
AVY99299.1\|3603182_3604280_-	hypothetical protein	I6PD76	Cronobacter_phage	8.6e-120	59.8
AVY99300.1\|3604281_3605670_-	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	5.9e-126	51.5
AVZ00325.1\|3605671_3606979_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.9e-142	56.8
AVY99301.1\|3606956_3607946_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	2.5e-30	35.6
AVY99302.1\|3609000_3609408_-	hypothetical protein	NA	NA	NA	NA
AVY99303.1\|3609604_3610120_-	hypothetical protein	K7PHH7	Enterobacteria_phage	9.7e-66	75.4
AVY99304.1\|3610116_3610653_-	lysozyme	H6WRZ4	Salmonella_phage	1.6e-87	84.2
AVY99305.1\|3610652_3610868_-\|holin	holin	A5LH82	Enterobacteria_phage	2.5e-28	81.7
AVY99306.1\|3610985_3611357_+	hypothetical protein	NA	NA	NA	NA
AVY99307.1\|3611516_3612332_-	antitermination protein	K7P7B9	Enterobacteria_phage	3.3e-124	80.4
AVY99308.1\|3612328_3612469_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	5.2e-06	60.5
AVY99309.1\|3612465_3612828_-	hypothetical protein	K7PM48	Enterobacteria_phage	1.2e-49	79.0
AVY99310.1\|3612830_3613037_-	hypothetical protein	H6WRY8	Salmonella_phage	7.9e-27	75.8
AVY99311.1\|3613036_3613639_-	hypothetical protein	S4TTI0	Salmonella_phage	1.3e-93	81.5

DBSCAN-SWA_8

3618886 : 3636136

Enterobacteria_phage(46.15%)

tRNA,integrase

attL 3613389:3613401|attR 3631324:3631336

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3613389:3613401	attL	NA	NA	NA	NA
AVY99318.1\|3618886_3619573_-	phage replication protein	G8C7U6	Escherichia_phage	1.4e-83	64.5
AVY99319.1\|3619569_3620427_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.7e-99	70.1
AVY99320.1\|3620561_3621110_-	regulator	M9NZI6	Enterobacteria_phage	1.7e-55	63.7
AVY99321.1\|3621129_3621357_-	transcriptional regulator	Q76H55	Enterobacteria_phage	1.3e-22	69.0
AVZ00326.1\|3621466_3622165_+	hypothetical protein	Q76H56	Enterobacteria_phage	1.1e-101	77.2
AVY99322.1\|3622257_3623865_+	hypothetical protein	A0A1S5SA14	Streptococcus_phage	7.2e-91	46.7
AVY99323.1\|3624619_3624817_+	hypothetical protein	NA	NA	NA	NA
AVY99324.1\|3624803_3625013_-	hypothetical protein	NA	NA	NA	NA
AVY99325.1\|3625511_3628391_+	exodeoxyribonuclease VIII	K7PJT5	Enterobacteria_phage	0.0e+00	71.9
AVZ00327.1\|3628402_3629515_+	enterohemolysin	H6WRX0	Salmonella_phage	2.2e-163	77.8
AVY99326.1\|3629554_3629797_+	DUF4060 domain-containing protein	K7PHF4	Enterobacteria_phage	2.1e-34	94.9
AVY99327.1\|3629861_3630077_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	4.8e-19	59.2
AVY99328.1\|3630076_3631297_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	9.5e-120	52.8
AVY99329.1\|3631363_3632344_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
3631324:3631336	attR	NA	NA	NA	NA
AVY99330.1\|3632445_3632745_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
AVY99331.1\|3632749_3635137_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AVY99332.1\|3635152_3636136_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.7e-34	43.2

DBSCAN-SWA_9

3690836 : 3716211

Cronobacter_phage(70.83%)

portal,terminase,tail,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVY99388.1\|3690836_3692462_-	hypothetical protein	F1BUJ7	Cronobacter_phage	7.0e-94	47.0
AVY99389.1\|3692458_3693013_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.7e-31	45.9
AVY99390.1\|3693002_3693695_-	hypothetical protein	NA	NA	NA	NA
AVY99391.1\|3693704_3695147_-	hypothetical protein	F1BUK3	Cronobacter_phage	2.9e-67	43.7
AVY99392.1\|3695150_3696821_-	hypothetical protein	F1BUK5	Cronobacter_phage	4.9e-42	52.5
AVY99393.1\|3696810_3697992_-	hypothetical protein	F1BUK6	Cronobacter_phage	4.4e-138	60.9
AVY99394.1\|3697984_3698314_-	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	3.4e-24	55.3
AVY99395.1\|3698310_3700329_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.1e-93	30.8
AVY99396.1\|3700534_3700807_-	hypothetical protein	A5X9I7	Aeromonas_virus	1.6e-14	52.4
AVY99397.1\|3700790_3701306_-	hypothetical protein	F1BUL1	Cronobacter_phage	1.5e-10	45.1
AVY99398.1\|3701305_3701644_-	hypothetical protein	F1BUL3	Cronobacter_phage	2.0e-35	69.3
AVY99399.1\|3701630_3701942_-	hypothetical protein	NA	NA	NA	NA
AVY99400.1\|3701945_3702401_-	DUF2597 domain-containing protein	A0A0U3TH58	Pseudomonas_phage	9.5e-41	58.7
AVY99401.1\|3702401_3703622_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.3e-92	45.8
AVY99402.1\|3704305_3704812_-	hypothetical protein	F1BUL7	Cronobacter_phage	2.7e-28	38.9
AVY99403.1\|3704808_3705261_-\|head	head completion protein	F1BUL8	Cronobacter_phage	4.3e-33	54.0
AVY99404.1\|3705393_3706116_-\|terminase	terminase	F1BUM0	Cronobacter_phage	1.5e-59	53.6
AVY99405.1\|3706119_3707289_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	7.8e-79	45.3
AVY99406.1\|3707366_3708257_-\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	6.6e-38	39.4
AVY99407.1\|3710269_3711370_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	9.2e-122	63.5
AVY99408.1\|3711366_3711693_+	hypothetical protein	F1BUM8	Cronobacter_phage	1.5e-11	37.3
AVY99409.1\|3711723_3712464_-	restriction endonuclease subunit M	A2I2Y7	Vibrio_virus	6.4e-87	62.7
AVY99410.1\|3712538_3712859_-	hypothetical protein	K7PK20	Enterobacteria_phage	5.9e-05	43.6
AVZ00331.1\|3712861_3715543_-	bifunctional DNA primase/helicase	A0A077K8T2	Ralstonia_phage	6.3e-233	45.2
AVY99411.1\|3715563_3715797_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	4.6e-07	41.8
AVZ00332.1\|3715810_3716023_-	hypothetical protein	NA	NA	NA	NA
AVY99412.1\|3716022_3716211_-	hypothetical protein	A0A0N7C1W2	Escherichia_phage	3.6e-10	45.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028521

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37054 : 45797

Emiliania_huxleyi_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ00398.1\|37054_39043_-	hypothetical protein	G8DH78	Emiliania_huxleyi_virus	5.3e-27	27.2
AVZ00470.1\|39111_39342_-	hypothetical protein	NA	NA	NA	NA
AVZ00471.1\|39998_40253_-	DNA polymerase III subunit theta	A0A077SLL5	Escherichia_phage	1.6e-21	67.9
AVZ00399.1\|40433_40625_-	hypothetical protein	NA	NA	NA	NA
AVZ00400.1\|40666_41356_-	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	5.4e-11	31.7
AVZ00401.1\|41567_42347_-	hypothetical protein	A0A219UQS0	Bacillus_phage	3.4e-06	32.3
AVZ00402.1\|43604_43832_-	type II toxin-antitoxin system antitoxin, RelB/DinJ family	A0A2H4JBG1	uncultured_Caudovirales_phage	6.9e-16	51.9
AVZ00403.1\|44010_44913_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVZ00404.1\|45050_45797_+	short-chain dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	2.9e-18	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028520

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028521

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection