CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP028577	Escherichia coli strain WCHEC005784 plasmid pNDM5_005784, complete sequence	0 crisprs	NA	0	0
CP028575	Escherichia coli strain WCHEC005784 plasmid p1_005784, complete sequence	0 crisprs	NA	0	0
CP028576	Escherichia coli strain WCHEC005784 plasmid pCTXM15_005784, complete sequence	0 crisprs	NA	0	2
CP028578	Escherichia coli strain WCHEC005784 chromosome, complete genome	7 crisprs	csa3,PD-DExK,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	11	9

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3213 : 28311

Escherichia_phage(46.15%)

transposase,protease,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ07133.1\|3213_3954_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	1.6e-24	57.6
AVZ07134.1\|5303_6179_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AVZ07135.1\|6225_6558_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
AVZ07136.1\|6904_7609_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVZ07137.1\|7979_8159_-	PdcA protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
AVZ07138.1\|8163_8544_-	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
AVZ07139.1\|8543_8765_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
AVZ07240.1\|8947_10504_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.2e-104	42.7
AVZ07140.1\|10500_11772_+	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	1.5e-11	28.0
AVZ07141.1\|11893_15010_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	3.7e-27	24.0
AVZ07142.1\|16057_16990_-	hypothetical protein	NA	NA	NA	NA
AVZ07143.1\|16993_17989_-	nucleotidyltransferase	NA	NA	NA	NA
AVZ07144.1\|18696_18915_+	antitoxin CcdA	NA	NA	NA	NA
AVZ07145.1\|18916_19222_+	toxin CcdB	NA	NA	NA	NA
AVZ07146.1\|19222_20029_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
AVZ07147.1\|20805_21510_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVZ07148.1\|22209_23070_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
AVZ07149.1\|23238_23943_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVZ07150.1\|24241_25102_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AVZ07151.1\|25378_26689_-	DUF262 domain-containing protein	NA	NA	NA	NA
AVZ07152.1\|26872_26977_-	hypothetical protein	NA	NA	NA	NA
AVZ07153.1\|26973_27438_-	mRNA interferase PemK	NA	NA	NA	NA
AVZ07154.1\|27657_28311_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

64285 : 97085

Escherichia_phage(38.46%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ07197.1\|64285_65558_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.8e-174	98.0
AVZ07198.1\|65579_66113_+	hypothetical protein	NA	NA	NA	NA
AVZ07245.1\|66580_66718_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AVZ07199.1\|66862_67204_-	hypothetical protein	NA	NA	NA	NA
AVZ07200.1\|67473_68037_-	class I SAM-dependent methyltransferase	A0A2I7RQ20	Vibrio_phage	3.0e-20	40.0
AVZ07201.1\|68084_69446_-	DUF3560 domain-containing protein	NA	NA	NA	NA
AVZ07202.1\|69497_69728_-	hypothetical protein	NA	NA	NA	NA
AVZ07203.1\|70756_70948_-	hypothetical protein	NA	NA	NA	NA
AVZ07247.1\|70947_71343_-	DUF1380 domain-containing protein	NA	NA	NA	NA
AVZ07204.1\|71408_71834_-	antirestriction protein	NA	NA	NA	NA
AVZ07205.1\|73077_73512_-	DUF1380 domain-containing protein	NA	NA	NA	NA
AVZ07206.1\|73525_73747_-	hypothetical protein	NA	NA	NA	NA
AVZ07207.1\|73747_74431_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	36.9
AVZ07246.1\|74815_75718_-	DUF1281 domain-containing protein	NA	NA	NA	NA
AVZ07208.1\|75755_76028_-	hypothetical protein	NA	NA	NA	NA
AVZ07209.1\|76584_77556_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
AVZ07210.1\|77555_78722_-	protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
AVZ07211.1\|79309_80065_-	replication initiation protein	I3WF20	Macacine_betaherpesvirus	3.8e-143	100.0
AVZ07212.1\|80185_80890_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVZ07213.1\|82662_83367_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVZ07248.1\|83998_84829_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
AVZ07249.1\|84959_85514_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
AVZ07214.1\|85657_86362_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVZ07250.1\|87264_87738_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
AVZ07215.1\|87868_88657_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
AVZ07216.1\|88862_89210_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AVZ07217.1\|89203_90043_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AVZ07218.1\|89972_90152_-	hypothetical protein	NA	NA	NA	NA
AVZ07219.1\|90170_90374_+	hypothetical protein	NA	NA	NA	NA
AVZ07220.1\|90529_91735_+	chromate transporter	NA	NA	NA	NA
AVZ07221.1\|91745_92051_+	PadR family transcriptional regulator	NA	NA	NA	NA
AVZ07222.1\|92066_92249_-	resolvase	NA	NA	NA	NA
AVZ07251.1\|92277_93042_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AVZ07223.1\|93232_93589_-	hypothetical protein	NA	NA	NA	NA
AVZ07224.1\|93534_94119_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AVZ07225.1\|94118_95357_-	MFS transporter	NA	NA	NA	NA
AVZ07226.1\|95353_96259_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
AVZ07227.1\|96380_97085_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028578

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP028578_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028578_1

981811-982449

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

The CRISPR arrays of CP028578_1

>merge|CP028578|1|981811-982449|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGACATTGACTGCCCGTGGCGTCCCCGCGACCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTTTGTCGAACACGGAGCGGAGCATACCCGCGAGTTCCCCGCGCCAGCGGGGATAAACCGTGCACGCCCTGCCGGAATCTCCCCTCGCTCTCGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTAAGCCGGTTGATTATCGCCAGGGATATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGAGCTTTATTGTTTTCAGGGAAAATAACGCGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCCAGTCTGAGGTTTTCCGGTCATACATCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCCAGTCTGAGGTTTTCCGGTCATACATCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGACCGTTGCTACACATATGATCAGGCATGTGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGATGAGACGCCCTGGTGTGCCGCGTTCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTAGCTCCGCAATGTTGGATATCACTGATGAGTTCCCCGCACCAGCGGGAATAAACCA

>CP028578|1|1|981811-982388|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACATTGACTGCCCGTGGCGTCCCCGCGACCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTGTCGAACACGGAGCGGAGCATACCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCTTTATTGTTTTCAGGGAAAATAACGCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>CP028578|1|1|981811-982449|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACATTGACTGCCCGTGGCGTCCCCGCGACCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTGTCGAACACGGAGCGGAGCATACCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCTTTATTGTTTTCAGGGAAAATAACGCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTAGCTCCGCAATGTTGGATATCACTGAT
GAGTTCCCCGCACCAGCGGGAATAAACCA

>CP028578|1|1|981811-982449|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACATTGACTGCCCGTGGCGTCCCCGCGACCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTGTCGAACACGGAGCGGAGCATACCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCTTTATTGTTTTCAGGGAAAATAACGCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTAGCTCCGCAATGTTGGATATCACTGAT
GAGTTCCCCGCACCAGCGGGAATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP028578.2\|AVZ08234.1\|984591_985869_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP028578.2\|AVZ08233.1\|983086_984565_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP028578.2\|AVZ08223.1\|968404_971161_-\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|236848
CP028578.2\|AVZ08239.1\|990681_991542_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
CP028578.2\|AVZ08230.1\|978276_979575_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP028578.2\|AVZ08236.1\|987042_988497_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP028578.2\|AVZ08237.1\|988590_989928_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP028578.2\|AVZ08227.1\|975126_975462_+\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP028578.2\|AVZ08235.1\|986187_986973_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
CP028578.2\|AVZ08231.1\|979634_980507_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
CP028578.2\|AVZ08240.1\|991641_992990_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
CP028578.2\|AVZ08242.1\|993716_993977_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP028578.2\|AVZ08238.1\|989905_990685_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
CP028578.2\|AVZ08226.1\|974878_975127_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP028578.2\|AVZ08232.1\|980800_981472_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP028578.2\|AVZ08228.1\|975533_976325_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP028578.2\|AVZ08241.1\|993124_993700_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP028578.2\|AVZ08229.1\|976552_978190_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP028578.2\|AVZ08225.1\|972566_974801_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP028578.2\|AVZ08224.1\|971217_972519_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291

Protein	Function_ID	Function_description	E-value
CP028578.2\|AVZ08234.1\|984591_985869_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.01506e-28
CP028578.2\|AVZ08233.1\|983086_984565_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.76431e-108
CP028578.2\|AVZ08223.1\|968404_971161_-\|signal-transduction-histidine-kinase	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP028578.2\|AVZ08239.1\|990681_991542_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	8.34461e-89
CP028578.2\|AVZ08230.1\|978276_979575_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP028578.2\|AVZ08236.1\|987042_988497_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.6361e-82
CP028578.2\|AVZ08237.1\|988590_989928_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.1165e-50
CP028578.2\|AVZ08227.1\|975126_975462_+\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
CP028578.2\|AVZ08235.1\|986187_986973_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.07958e-139
CP028578.2\|AVZ08231.1\|979634_980507_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	6.02863e-94
CP028578.2\|AVZ08240.1\|991641_992990_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.29095e-52
CP028578.2\|AVZ08242.1\|993716_993977_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
CP028578.2\|AVZ08238.1\|989905_990685_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.81851e-61
CP028578.2\|AVZ08226.1\|974878_975127_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP028578.2\|AVZ08232.1\|980800_981472_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
CP028578.2\|AVZ08228.1\|975533_976325_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
CP028578.2\|AVZ08241.1\|993124_993700_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
CP028578.2\|AVZ08229.1\|976552_978190_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP028578.2\|AVZ08225.1\|972566_974801_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP028578.2\|AVZ08224.1\|971217_972519_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0

>CP028578.2|AVZ08232.1|980800_981472_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP028578.2|AVZ08231.1|979634_980507_-|YgcG-family-protein
MRYFILIFTFVCSFIAAQPTIVPSLQQQVTDLTSSLNSQEKKELTYKLESIFNNTQVQIAVLIVPTTKDETIEKYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSEIESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSDGGGSSGGGGASGRW
>CP028578.2|AVZ08230.1|978276_979575_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP028578.2|AVZ08229.1|976552_978190_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP028578.2|AVZ08228.1|975533_976325_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP028578.2|AVZ08227.1|975126_975462_+|mRNA-interferase-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP028578.2|AVZ08226.1|974878_975127_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP028578.2|AVZ08225.1|972566_974801_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRECVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVMANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP028578.2|AVZ08224.1|971217_972519_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDNPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLDSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVAGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP028578.2|AVZ08223.1|968404_971161_-|signal-transduction-histidine-kinase
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>CP028578.2|AVZ08233.1|983086_984565_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKLLPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYNAMNKGIFKELTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP028578.2|AVZ08234.1|984591_985869_-|MFS-transporter
MQHNSYRRWIALAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>CP028578.2|AVZ08235.1|986187_986973_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSIESLNALSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILINNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP028578.2|AVZ08236.1|987042_988497_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>CP028578.2|AVZ08237.1|988590_989928_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP028578.2|AVZ08238.1|989905_990685_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLELIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAVGKAAIIRKTVAAESPAMQCLQLARAEQQRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>CP028578.2|AVZ08239.1|990681_991542_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAATASWQAAQDFSGCTLAHWKIEPQPAVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHAECQ
>CP028578.2|AVZ08240.1|991641_992990_-|IS3-family-transposase
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPRVAARFNIPSHNTVKNWIKGYRKSGNEAFIRRRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKKPPGAGEKTKVIRSLRCGHCQSDLLKAAGLARSTLYYQLSLQKAKDKYADVKQLIASIFHEHRGCYGYRRIHCELQKRGLKFSGKTVRKLMQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSALADRGLVQSMSRKGNCLDNAVMENFFGHLKEEMYYRRDYRNVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEHQKAG
>CP028578.2|AVZ08241.1|993124_993700_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP028578.2|AVZ08242.1|993716_993977_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028578_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028578_2

1010936-1011571

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAA	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAA	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAA	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP028578_2

>merge|CP028578|2|1010936-1011571|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAATCGCCGAATAGACAATGACCGCAAAGTGTCTATCGGTGTTCCCCGCGCCAGCGGGGATAAATCGCTTTCCTACTGAATCCGCGTCGGTTGCCTCTGGTGTTCCCCGCGCCAGCGGGGATAAATCGAGCCAGACACATTGCTTTATCGCGCCACGCTGGTGTTCCCCGCGCCAGCGGGGATAAATCGGCGAGTAAGAGTACTGAGTATTTTAATCTCATGTGTTCCCCGCGCCAGCGGGGATAAATCGGCCATAGACTTTATTAACTTCATTGGGGGTTAGTGTTCCCCGCGCCAGCGGGGATAAATCGCGTATCACAACCGGCCTCAGTACGTATCAGAAGTGTTCCCCGCGCCAGCGGGGATAAATCGAGGGGCAGGGAGTGACGCTGGAGCAGGCGATCGTGTTCCCCGCGCCAGCGGAGATAAACCGCAGGGAAACCGTTCGTACTTATCGACCTCAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGGGGACGGCTACGGGACGCCGCCTATTGACGTGTTCCCCGCGTCAGCGGGGATAAACCGGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACT

>CP028578|2|2|1010936-1011449|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCCGAATAGACAATGACCGCAAAGTGTCTATCG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCTTTCCTACTGAATCCGCGTCGGTTGCCTCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGCCAGACACATTGCTTTATCGCGCCACGCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCGAGTAAGAGTACTGAGTATTTTAATCTCAT
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCCATAGACTTTATTAACTTCATTGGGGGTTA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCGTATCACAACCGGCCTCAGTACGTATCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGGGGCAGGGAGTGACGCTGGAGCAGGCGATC
GTGTTCCCCGCGCCAGCGGAGATAAA	CCGCAGGGAAACCGTTCGTACTTATCGACCTCAAC
GTGTTCCCCGCGCCAGCGGGGATAAA

>CP028578|2|2|1010936-1011510|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCCGAATAGACAATGACCGCAAAGTGTCTATCG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCTTTCCTACTGAATCCGCGTCGGTTGCCTCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGCCAGACACATTGCTTTATCGCGCCACGCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCGAGTAAGAGTACTGAGTATTTTAATCTCAT
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCCATAGACTTTATTAACTTCATTGGGGGTTA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCGTATCACAACCGGCCTCAGTACGTATCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGGGGCAGGGAGTGACGCTGGAGCAGGCGATC
GTGTTCCCCGCGCCAGCGGAGATAAA	CCGCAGGGAAACCGTTCGTACTTATCGACCTCAAC
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGAAGGGGACGGCTACGGGACGCCGCCTATTGAC
GTGTTCCCCGCGTCAGCGGGGATAAA

>CP028578|2|2|1010936-1011571|CRT
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCCGAATAGACAATGACCGCAAAGTGTCTATCG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCTTTCCTACTGAATCCGCGTCGGTTGCCTCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGCCAGACACATTGCTTTATCGCGCCACGCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCGAGTAAGAGTACTGAGTATTTTAATCTCAT
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCCATAGACTTTATTAACTTCATTGGGGGTTA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCGTATCACAACCGGCCTCAGTACGTATCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGGGGCAGGGAGTGACGCTGGAGCAGGCGATC
GTGTTCCCCGCGCCAGCGGAGATAAA	CCGCAGGGAAACCGTTCGTACTTATCGACCTCAAC
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGAAGGGGACGGCTACGGGACGCCGCCTATTGAC
GTGTTCCCCGCGTCAGCGGGGATAAA	CCGGACGCACTGGATGCGATGATGGACATCACTTG
GAGTTCCCCGCCCCTGCGGTAGAACT

Protein	Signature genes	Signature genes Name	Protein_function
CP028578.2\|AVZ08263.1\|1016392_1016704_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP028578.2\|AVZ08265.1\|1017432_1017912_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP028578.2\|AVZ08264.1\|1016722_1017433_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP028578.2\|AVZ08256.1\|1009625_1010549_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP028578.2\|AVZ08262.1\|1015875_1016199_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP028578.2\|AVZ08251.1\|1005074_1006637_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028578.2\|AVZ08259.1\|1012883_1013792_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP028578.2\|AVZ08249.1\|1000810_1001923_+\|IS4-like-element-IS421-family-transposase	unknown	unknown	gnl\|CDD\|376573
CP028578.2\|AVZ08255.1\|1008978_1009629_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP028578.2\|AVZ08252.1\|1006633_1007170_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP028578.2\|AVZ08261.1\|1015220_1015826_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP028578.2\|AVZ08266.1\|1017908_1018958_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP028578.2\|AVZ08248.1\|1000581_1000734_+\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|366840
CP028578.2\|AVZ08267.1\|1018938_1019700_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP028578.2\|AVZ08250.1\|1002277_1004977_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP028578.2\|AVZ08257.1\|1010545_1010839_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP028578.2\|AVZ08258.1\|1011594_1012632_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP028578.2\|AVZ08260.1\|1013793_1015221_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP028578.2\|AVZ08254.1\|1008250_1008997_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP028578.2\|AVZ08253.1\|1007184_1008240_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
CP028578.2\|AVZ08263.1\|1016392_1016704_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP028578.2\|AVZ08265.1\|1017432_1017912_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.39634e-105
CP028578.2\|AVZ08264.1\|1016722_1017433_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
CP028578.2\|AVZ08256.1\|1009625_1010549_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
CP028578.2\|AVZ08262.1\|1015875_1016199_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP028578.2\|AVZ08251.1\|1005074_1006637_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028578.2\|AVZ08259.1\|1012883_1013792_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP028578.2\|AVZ08249.1\|1000810_1001923_+\|IS4-like-element-IS421-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.16058e-15
CP028578.2\|AVZ08255.1\|1008978_1009629_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.05036e-90
CP028578.2\|AVZ08252.1\|1006633_1007170_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.72866e-28
CP028578.2\|AVZ08261.1\|1015220_1015826_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP028578.2\|AVZ08266.1\|1017908_1018958_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP028578.2\|AVZ08248.1\|1000581_1000734_+\|Hok/Gef-family-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP028578.2\|AVZ08267.1\|1018938_1019700_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP028578.2\|AVZ08250.1\|1002277_1004977_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP028578.2\|AVZ08257.1\|1010545_1010839_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	9.65861e-64
CP028578.2\|AVZ08258.1\|1011594_1012632_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP028578.2\|AVZ08260.1\|1013793_1015221_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP028578.2\|AVZ08254.1\|1008250_1008997_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.25317e-47
CP028578.2\|AVZ08253.1\|1007184_1008240_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.45078e-156

>CP028578.2|AVZ08257.1|1010545_1010839_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRIAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGVRLVSFLPVDNQ
>CP028578.2|AVZ08256.1|1009625_1010549_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP028578.2|AVZ08255.1|1008978_1009629_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLLPAQLLHLVGRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP028578.2|AVZ08254.1|1008250_1008997_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDASYRLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP028578.2|AVZ08253.1|1007184_1008240_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECVSFDVMNKQGSMKDVLDFICA
>CP028578.2|AVZ08252.1|1006633_1007170_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDDLLRQLRRAVKLLNGSVNLISLAEDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>CP028578.2|AVZ08251.1|1005074_1006637_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRYKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLESEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLDKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRHIEEGQDADELLSKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQNAKAAREKKQEAAE
>CP028578.2|AVZ08250.1|1002277_1004977_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLTDYFRQLGFADTEQAAQFFAWLLCWHDTGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWHHYLSEYEELLPSSSLSPRKLKRVMEMWMPITTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLVQAQNALTVFPLKAKVAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQCDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDSSQRAGKVLICTQVLESSVDCDMDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIASVVKPYANGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRKDPEMANVILVTDDESCGYSAMEGLTGKVG
>CP028578.2|AVZ08249.1|1000810_1001923_+|IS4-like-element-IS421-family-transposase
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN
>CP028578.2|AVZ08248.1|1000581_1000734_+|Hok/Gef-family-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP028578.2|AVZ08258.1|1011594_1012632_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSAKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP028578.2|AVZ08259.1|1012883_1013792_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP028578.2|AVZ08260.1|1013793_1015221_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP028578.2|AVZ08261.1|1015220_1015826_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP028578.2|AVZ08262.1|1015875_1016199_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP028578.2|AVZ08263.1|1016392_1016704_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP028578.2|AVZ08264.1|1016722_1017433_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP028578.2|AVZ08265.1|1017432_1017912_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP028578.2|AVZ08266.1|1017908_1018958_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP028578.2|AVZ08267.1|1018938_1019700_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028578_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028578_3

2212521-2212644

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028578_3

>merge|CP028578|3|2212521-2212644|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP028578|3|3|2212521-2212644|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP028578.2\|AVZ09341.1\|2207361_2208009_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
CP028578.2\|AVZ09351.1\|2217963_2219175_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
CP028578.2\|AVZ09337.1\|2201975_2203388_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
CP028578.2\|AVZ09355.1\|2221540_2221630_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP028578.2\|AVZ09356.1\|2221795_2222965_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP028578.2\|AVZ09352.1\|2219287_2220220_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
CP028578.2\|AVZ09354.1\|2221229_2221454_-\|hypothetical-protein	unknown	unknown	unknown
CP028578.2\|AVZ09348.1\|2214255_2215629_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP028578.2\|AVZ09350.1\|2216524_2217673_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP028578.2\|AVZ09339.1\|2204608_2205235_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182135
CP028578.2\|AVZ09345.1\|2210350_2211955_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
CP028578.2\|AVZ09349.1\|2215843_2216485_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP028578.2\|AVZ09340.1\|2205255_2207358_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
CP028578.2\|AVZ09338.1\|2203944_2204154_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP028578.2\|AVZ09343.1\|2208737_2209523_+\|protein-PhsC	unknown	unknown	gnl\|CDD\|184968
CP028578.2\|AVZ09342.1\|2208072_2208741_+\|thiosulfate-reductase-electron-transport-protein-PhsB	unknown	unknown	gnl\|CDD\|274451
CP028578.2\|AVZ09346.1\|2212080_2212386_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP028578.2\|AVZ09353.1\|2220216_2221242_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP028578.2\|AVZ09344.1\|2209526_2210339_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP028578.2\|AVZ09347.1\|2212958_2214215_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602

Protein	Function_ID	Function_description	E-value
CP028578.2\|AVZ09341.1\|2207361_2208009_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	3.717e-122
CP028578.2\|AVZ09351.1\|2217963_2219175_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP028578.2\|AVZ09337.1\|2201975_2203388_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP028578.2\|AVZ09356.1\|2221795_2222965_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
CP028578.2\|AVZ09352.1\|2219287_2220220_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP028578.2\|AVZ09348.1\|2214255_2215629_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP028578.2\|AVZ09350.1\|2216524_2217673_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP028578.2\|AVZ09339.1\|2204608_2205235_+\|hypothetical-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
CP028578.2\|AVZ09345.1\|2210350_2211955_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP028578.2\|AVZ09349.1\|2215843_2216485_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
CP028578.2\|AVZ09340.1\|2205255_2207358_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
CP028578.2\|AVZ09338.1\|2203944_2204154_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP028578.2\|AVZ09343.1\|2208737_2209523_+\|protein-PhsC	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.40835e-163
CP028578.2\|AVZ09342.1\|2208072_2208741_+\|thiosulfate-reductase-electron-transport-protein-PhsB	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
CP028578.2\|AVZ09346.1\|2212080_2212386_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
CP028578.2\|AVZ09353.1\|2220216_2221242_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP028578.2\|AVZ09344.1\|2209526_2210339_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	8.58482e-174
CP028578.2\|AVZ09347.1\|2212958_2214215_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0

>CP028578.2|AVZ09346.1|2212080_2212386_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP028578.2|AVZ09345.1|2210350_2211955_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>CP028578.2|AVZ09344.1|2209526_2210339_+|hypothetical-protein
MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARITTAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>CP028578.2|AVZ09343.1|2208737_2209523_+|protein-PhsC
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP028578.2|AVZ09342.1|2208072_2208741_+|thiosulfate-reductase-electron-transport-protein-PhsB
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP028578.2|AVZ09341.1|2207361_2208009_+|YdhW-family-putative-oxidoreductase-system-protein
MGKMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYLVAEEELSVLLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP028578.2|AVZ09340.1|2205255_2207358_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>CP028578.2|AVZ09339.1|2204608_2205235_+|hypothetical-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP028578.2|AVZ09338.1|2203944_2204154_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP028578.2|AVZ09337.1|2201975_2203388_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP028578.2|AVZ09347.1|2212958_2214215_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFIVGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP028578.2|AVZ09348.1|2214255_2215629_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>CP028578.2|AVZ09349.1|2215843_2216485_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP028578.2|AVZ09350.1|2216524_2217673_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP028578.2|AVZ09351.1|2217963_2219175_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKLVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>CP028578.2|AVZ09352.1|2219287_2220220_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP028578.2|AVZ09353.1|2220216_2221242_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP028578.2|AVZ09354.1|2221229_2221454_-|hypothetical-protein
MISVFTTSPFRQDRPKFHAYTICVLAIDPFLTLRVVFPAYRNTFVVRKVCKGKRLPCDFAGAEVRVWSEMEWQQ
>CP028578.2|AVZ09355.1|2221540_2221630_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP028578.2|AVZ09356.1|2221795_2222965_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028578_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028578_5

3176501-3176645

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028578_5

>merge|CP028578|5|3176501-3176645|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>CP028578|5|5|3176501-3176645|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP028578.2\|AVZ10238.1\|3182851_3183847_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
CP028578.2\|AVZ10235.1\|3179112_3180546_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
CP028578.2\|AVZ10226.1\|3169485_3170163_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
CP028578.2\|AVZ10229.1\|3172048_3173089_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|185063
CP028578.2\|AVZ10243.1\|3187365_3187575_-\|hypothetical-protein	unknown	unknown	unknown
CP028578.2\|AVZ10234.1\|3176668_3178930_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
CP028578.2\|AVZ10225.1\|3166885_3168907_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP028578.2\|AVZ10224.1\|3165785_3166694_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP028578.2\|AVZ10241.1\|3185881_3186571_-\|molybdenum-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181841
CP028578.2\|AVZ10231.1\|3174523_3175000_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
CP028578.2\|AVZ10233.1\|3175151_3176435_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|236709
CP028578.2\|AVZ10237.1\|3181857_3182811_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
CP028578.2\|AVZ10236.1\|3180621_3181674_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
CP028578.2\|AVZ10239.1\|3184001_3184820_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523
CP028578.2\|AVZ10232.1\|3174914_3175094_+\|hypothetical-protein	unknown	unknown	unknown
CP028578.2\|AVZ10230.1\|3173175_3174465_+\|adenosylmethionine--8-amino-7-oxononanoate-aminotransferase-BioA	unknown	unknown	gnl\|CDD\|181189
CP028578.2\|AVZ10227.1\|3170155_3170911_-\|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
CP028578.2\|AVZ10240.1\|3184820_3185879_-\|molybdenum-import-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
CP028578.2\|AVZ10228.1\|3170897_3172052_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
CP028578.2\|AVZ10242.1\|3186570_3187344_-\|molybdate-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|182641

Protein	Function_ID	Function_description	E-value
CP028578.2\|AVZ10238.1\|3182851_3183847_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
CP028578.2\|AVZ10235.1\|3179112_3180546_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
CP028578.2\|AVZ10226.1\|3169485_3170163_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	1.13421e-109
CP028578.2\|AVZ10229.1\|3172048_3173089_-\|biotin-synthase	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
CP028578.2\|AVZ10234.1\|3176668_3178930_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
CP028578.2\|AVZ10225.1\|3166885_3168907_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP028578.2\|AVZ10224.1\|3165785_3166694_+\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
CP028578.2\|AVZ10241.1\|3185881_3186571_-\|molybdenum-ABC-transporter-permease	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
CP028578.2\|AVZ10231.1\|3174523_3175000_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118
CP028578.2\|AVZ10233.1\|3175151_3176435_+\|acyl-CoA-thioesterase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
CP028578.2\|AVZ10237.1\|3181857_3182811_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
CP028578.2\|AVZ10236.1\|3180621_3181674_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
CP028578.2\|AVZ10239.1\|3184001_3184820_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
CP028578.2\|AVZ10242.1\|3186570_3187344_-\|molybdate-binding-periplasmic-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
CP028578.2\|AVZ10230.1\|3173175_3174465_+\|adenosylmethionine--8-amino-7-oxononanoate-aminotransferase-BioA	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
CP028578.2\|AVZ10227.1\|3170155_3170911_-\|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	7.9121e-172
CP028578.2\|AVZ10240.1\|3184820_3185879_-\|molybdenum-import-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
CP028578.2\|AVZ10228.1\|3170897_3172052_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0

>CP028578.2|AVZ10233.1|3175151_3176435_+|acyl-CoA-thioesterase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>CP028578.2|AVZ10232.1|3174914_3175094_+|hypothetical-protein
MKVPAARWSGLTFISTLWQAPRLLRCLVNHSARWRNAIWYHLKVLKTTFCLFTFPFRSS
>CP028578.2|AVZ10231.1|3174523_3175000_+|kinase-inhibitor
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>CP028578.2|AVZ10230.1|3173175_3174465_+|adenosylmethionine--8-amino-7-oxononanoate-aminotransferase-BioA
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>CP028578.2|AVZ10229.1|3172048_3173089_-|biotin-synthase
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>CP028578.2|AVZ10228.1|3170897_3172052_-|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>CP028578.2|AVZ10227.1|3170155_3170911_-|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC
MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>CP028578.2|AVZ10226.1|3169485_3170163_-|ATP-dependent-dethiobiotin-synthetase-BioD
MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLHNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>CP028578.2|AVZ10225.1|3166885_3168907_-|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>CP028578.2|AVZ10224.1|3165785_3166694_+|hypothetical-protein
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>CP028578.2|AVZ10234.1|3176668_3178930_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>CP028578.2|AVZ10235.1|3179112_3180546_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>CP028578.2|AVZ10236.1|3180621_3181674_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>CP028578.2|AVZ10237.1|3181857_3182811_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>CP028578.2|AVZ10238.1|3182851_3183847_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>CP028578.2|AVZ10239.1|3184001_3184820_+|Cof-type-HAD-IIB-family-hydrolase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDSFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>CP028578.2|AVZ10240.1|3184820_3185879_-|molybdenum-import-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>CP028578.2|AVZ10241.1|3185881_3186571_-|molybdenum-ABC-transporter-permease
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>CP028578.2|AVZ10242.1|3186570_3187344_-|molybdate-binding-periplasmic-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGIKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK
>CP028578.2|AVZ10243.1|3187365_3187575_-|hypothetical-protein
MVKYSTSFLVLVKKTSPDKIIDSLNARLVGHFLFLNFLLFLPIFFLIYLTKVSNNCWENSELVVILSPT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028578_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028578_6

3426242-3426338

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028578_6

>merge|CP028578|6|3426242-3426338|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>CP028578|6|6|3426242-3426338|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP028578.2\|AVZ10463.1\|3439392_3440847_-\|putative-allantoin-permease	unknown	unknown	gnl\|CDD\|183106
CP028578.2\|AVZ10454.1\|3426371_3427265_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
CP028578.2\|AVZ10445.1\|3418949_3419492_-\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
CP028578.2\|AVZ10455.1\|3427261_3428077_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
CP028578.2\|AVZ10459.1\|3434433_3435219_+\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
CP028578.2\|AVZ10462.1\|3437971_3439333_-\|cyclic-amidohydrolase	unknown	unknown	gnl\|CDD\|169193
CP028578.2\|AVZ10448.1\|3421150_3421672_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
CP028578.2\|AVZ10449.1\|3421707_3423093_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
CP028578.2\|AVZ10461.1\|3436613_3437915_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
CP028578.2\|AVZ10452.1\|3424603_3425113_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
CP028578.2\|AVZ10458.1\|3433187_3434423_+\|Zn-dependent-hydrolase	unknown	unknown	gnl\|CDD\|274471
CP028578.2\|AVZ10447.1\|3420830_3421043_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
CP028578.2\|AVZ10444.1\|3418037_3418730_-\|fimbrial-chaperone-SfmC	unknown	unknown	gnl\|CDD\|185117
CP028578.2\|AVZ10446.1\|3419962_3420829_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|236760
CP028578.2\|AVZ10456.1\|3428087_3429347_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
CP028578.2\|AVZ10450.1\|3423266_3423761_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|182734
CP028578.2\|AVZ10451.1\|3423763_3424486_+\|UDP-2,3-diacylglucosamine-hydrolase	unknown	unknown	gnl\|CDD\|235420
CP028578.2\|AVZ10460.1\|3435446_3436592_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|182152
CP028578.2\|AVZ10453.1\|3425109_3426177_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
CP028578.2\|AVZ10457.1\|3429356_3431024_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395

Protein	Function_ID	Function_description	E-value
CP028578.2\|AVZ10463.1\|3439392_3440847_-\|putative-allantoin-permease	gnl\|CDD\|183106	PRK11375, PRK11375, putative allantoin permease.	0
CP028578.2\|AVZ10454.1\|3426371_3427265_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
CP028578.2\|AVZ10445.1\|3418949_3419492_-\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
CP028578.2\|AVZ10455.1\|3427261_3428077_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.47659e-37
CP028578.2\|AVZ10459.1\|3434433_3435219_+\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	2.39799e-151
CP028578.2\|AVZ10462.1\|3437971_3439333_-\|cyclic-amidohydrolase	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
CP028578.2\|AVZ10448.1\|3421150_3421672_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.2285e-30
CP028578.2\|AVZ10449.1\|3421707_3423093_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
CP028578.2\|AVZ10461.1\|3436613_3437915_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
CP028578.2\|AVZ10452.1\|3424603_3425113_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
CP028578.2\|AVZ10458.1\|3433187_3434423_+\|Zn-dependent-hydrolase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
CP028578.2\|AVZ10447.1\|3420830_3421043_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
CP028578.2\|AVZ10444.1\|3418037_3418730_-\|fimbrial-chaperone-SfmC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
CP028578.2\|AVZ10446.1\|3419962_3420829_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
CP028578.2\|AVZ10456.1\|3428087_3429347_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.27269e-131
CP028578.2\|AVZ10450.1\|3423266_3423761_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
CP028578.2\|AVZ10451.1\|3423763_3424486_+\|UDP-2,3-diacylglucosamine-hydrolase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.41122e-165
CP028578.2\|AVZ10460.1\|3435446_3436592_-\|glycerate-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
CP028578.2\|AVZ10453.1\|3425109_3426177_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	8.91372e-178
CP028578.2\|AVZ10457.1\|3429356_3431024_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0

>CP028578.2|AVZ10453.1|3425109_3426177_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGVPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>CP028578.2|AVZ10452.1|3424603_3425113_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>CP028578.2|AVZ10451.1|3423763_3424486_+|UDP-2,3-diacylglucosamine-hydrolase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>CP028578.2|AVZ10450.1|3423266_3423761_+|peptidyl-prolyl-cis-trans-isomerase
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>CP028578.2|AVZ10449.1|3421707_3423093_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>CP028578.2|AVZ10448.1|3421150_3421672_+|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFVFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR
>CP028578.2|AVZ10447.1|3420830_3421043_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>CP028578.2|AVZ10446.1|3419962_3420829_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>CP028578.2|AVZ10445.1|3418949_3419492_-|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>CP028578.2|AVZ10444.1|3418037_3418730_-|fimbrial-chaperone-SfmC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>CP028578.2|AVZ10454.1|3426371_3427265_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>CP028578.2|AVZ10455.1|3427261_3428077_-|DUF2877-domain-containing-protein
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>CP028578.2|AVZ10456.1|3428087_3429347_-|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>CP028578.2|AVZ10457.1|3429356_3431024_-|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALMQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>CP028578.2|AVZ10458.1|3433187_3434423_+|Zn-dependent-hydrolase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>CP028578.2|AVZ10459.1|3434433_3435219_+|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>CP028578.2|AVZ10460.1|3435446_3436592_-|glycerate-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>CP028578.2|AVZ10461.1|3436613_3437915_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>CP028578.2|AVZ10462.1|3437971_3439333_-|cyclic-amidohydrolase
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>CP028578.2|AVZ10463.1|3439392_3440847_-|putative-allantoin-permease
MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENGGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVSWFVGVIVAFAAYALLKKRTTAEKTGEQKTIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028578_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028578_7

3567159-3567303

Orphan

Consensus_repeat	Method
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028578_7

>merge|CP028578|7|3567159-3567303|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

>CP028578|7|7|3567159-3567303|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACC
TTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
CP028578.2\|AVZ10570.1\|3552297_3553368_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
CP028578.2\|AVZ10582.1\|3570273_3570951_-\|protein-AroM	unknown	unknown	gnl\|CDD\|182491
CP028578.2\|AVZ10571.1\|3553460_3554042_+\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207
CP028578.2\|AVZ11863.1\|3568359_3569271_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|225521
CP028578.2\|AVZ10581.1\|3569917_3570202_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
CP028578.2\|AVZ10573.1\|3556019_3557393_-\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
CP028578.2\|AVZ10572.1\|3554046_3555861_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
CP028578.2\|AVZ10574.1\|3557468_3558788_-\|branched-chain-amino-acid-transport-system-2-carrier-protein	unknown	unknown	gnl\|CDD\|185331
CP028578.2\|AVZ10580.1\|3569428_3569710_-\|DUF2773-domain-containing-protein	unknown	unknown	gnl\|CDD\|287885
CP028578.2\|AVZ10578.1\|3562625_3565772_+\|nuclease-SbcCD-subunit-C	unknown	unknown	gnl\|CDD\|182330
CP028578.2\|AVZ10587.1\|3572734_3573544_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
CP028578.2\|AVZ10575.1\|3559194_3560490_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182895
CP028578.2\|AVZ10584.1\|3571208_3571400_-\|protein-YaiA	unknown	unknown	gnl\|CDD\|182421
CP028578.2\|AVZ10576.1\|3560547_3561237_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|182277
CP028578.2\|AVZ11862.1\|3565897_3567082_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|182234
CP028578.2\|AVZ10586.1\|3572156_3572615_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
CP028578.2\|AVZ10577.1\|3561426_3562629_+\|exonuclease-sbcCD-subunit-D	unknown	unknown	gnl\|CDD\|182871
CP028578.2\|AVZ10585.1\|3571449_3571974_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|235153
CP028578.2\|AVZ10583.1\|3570980_3571178_-\|hypothetical-protein	unknown	unknown	unknown
CP028578.2\|AVZ10579.1\|3567326_3568235_-\|fructokinase	unknown	unknown	gnl\|CDD\|236565

Protein	Function_ID	Function_description	E-value
CP028578.2\|AVZ10570.1\|3552297_3553368_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
CP028578.2\|AVZ10582.1\|3570273_3570951_-\|protein-AroM	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
CP028578.2\|AVZ10571.1\|3553460_3554042_+\|ACP-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
CP028578.2\|AVZ11863.1\|3568359_3569271_+\|recombination-associated-protein-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
CP028578.2\|AVZ10581.1\|3569917_3570202_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
CP028578.2\|AVZ10573.1\|3556019_3557393_-\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
CP028578.2\|AVZ10572.1\|3554046_3555861_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
CP028578.2\|AVZ10574.1\|3557468_3558788_-\|branched-chain-amino-acid-transport-system-2-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
CP028578.2\|AVZ10580.1\|3569428_3569710_-\|DUF2773-domain-containing-protein	gnl\|CDD\|287885	pfam10971, DUF2773, Protein of unknown function (DUF2773). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.	1.10173e-36
CP028578.2\|AVZ10578.1\|3562625_3565772_+\|nuclease-SbcCD-subunit-C	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
CP028578.2\|AVZ10587.1\|3572734_3573544_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
CP028578.2\|AVZ10575.1\|3559194_3560490_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
CP028578.2\|AVZ10576.1\|3560547_3561237_-\|DNA-binding-response-regulator	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
CP028578.2\|AVZ11862.1\|3565897_3567082_+\|MFS-transporter	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
CP028578.2\|AVZ10586.1\|3572156_3572615_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.50663e-80
CP028578.2\|AVZ10577.1\|3561426_3562629_+\|exonuclease-sbcCD-subunit-D	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
CP028578.2\|AVZ10585.1\|3571449_3571974_-\|shikimate-kinase	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
CP028578.2\|AVZ10584.1\|3571208_3571400_-\|protein-YaiA	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
CP028578.2\|AVZ10579.1\|3567326_3568235_-\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0

>CP028578.2|AVZ11862.1|3565897_3567082_+|MFS-transporter
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>CP028578.2|AVZ10578.1|3562625_3565772_+|nuclease-SbcCD-subunit-C
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>CP028578.2|AVZ10577.1|3561426_3562629_+|exonuclease-sbcCD-subunit-D
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>CP028578.2|AVZ10576.1|3560547_3561237_-|DNA-binding-response-regulator
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>CP028578.2|AVZ10575.1|3559194_3560490_-|PAS-domain-containing-sensor-histidine-kinase
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>CP028578.2|AVZ10574.1|3557468_3558788_-|branched-chain-amino-acid-transport-system-2-carrier-protein
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>CP028578.2|AVZ10573.1|3556019_3557393_-|proline-specific-permease-ProY
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>CP028578.2|AVZ10572.1|3554046_3555861_-|maltodextrin-glucosidase
MLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLGQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>CP028578.2|AVZ10571.1|3553460_3554042_+|ACP-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>CP028578.2|AVZ10570.1|3552297_3553368_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE
>CP028578.2|AVZ10579.1|3567326_3568235_-|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>CP028578.2|AVZ11863.1|3568359_3569271_+|recombination-associated-protein-RdgC
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>CP028578.2|AVZ10580.1|3569428_3569710_-|DUF2773-domain-containing-protein
MLQSRNDHLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLSLLRDLVKTGATRKIRSEARHRLEEKQ
>CP028578.2|AVZ10581.1|3569917_3570202_-|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>CP028578.2|AVZ10582.1|3570273_3570951_-|protein-AroM
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>CP028578.2|AVZ10583.1|3570980_3571178_-|hypothetical-protein
MPLQGICVTFFIIHVFLIIRILNNNNPLLESFGIFTLCRARLLLRFLSFVAQVSVSSGASHLPGN
>CP028578.2|AVZ10584.1|3571208_3571400_-|protein-YaiA
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>CP028578.2|AVZ10585.1|3571449_3571974_-|shikimate-kinase
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>CP028578.2|AVZ10586.1|3572156_3572615_-|YaiI/YqxD-family-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>CP028578.2|AVZ10587.1|3572734_3573544_+|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028578_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028578_8

4206697-4206846

Orphan

Consensus_repeat	Method
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028578_8

>merge|CP028578|8|4206697-4206846|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCATGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

>CP028578|8|8|4206697-4206846|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCA
TGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP028578.2\|AVZ11178.1\|4217058_4217772_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183714
CP028578.2\|AVZ11161.1\|4195909_4196269_-\|hypothetical-protein	unknown	unknown	unknown
CP028578.2\|AVZ11170.1\|4207013_4207457_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
CP028578.2\|AVZ11163.1\|4197514_4198153_-\|hypothetical-protein	unknown	unknown	unknown
CP028578.2\|AVZ11169.1\|4205148_4206660_+\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP028578.2\|AVZ11168.1\|4203781_4204882_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
CP028578.2\|AVZ11165.1\|4199889_4200909_+\|aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
CP028578.2\|AVZ11164.1\|4198182_4199445_-\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
CP028578.2\|AVZ11177.1\|4216394_4216988_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP028578.2\|AVZ11176.1\|4215797_4216250_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
CP028578.2\|AVZ11172.1\|4210363_4211551_-\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|226719
CP028578.2\|AVZ11175.1\|4212870_4213875_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
CP028578.2\|AVZ11171.1\|4207456_4210312_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
CP028578.2\|AVZ11174.1\|4212292_4212709_-\|regulator-of-ribonuclease-activity-B	unknown	unknown	gnl\|CDD\|236876
CP028578.2\|AVZ11893.1\|4196261_4196846_-\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	unknown
CP028578.2\|AVZ11167.1\|4202699_4203782_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
CP028578.2\|AVZ11166.1\|4201036_4202539_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
CP028578.2\|AVZ11162.1\|4196907_4197138_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
CP028578.2\|AVZ11173.1\|4211743_4212247_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP028578.2\|AVZ11179.1\|4217902_4218298_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100005

Protein	Function_ID	Function_description	E-value
CP028578.2\|AVZ11178.1\|4217058_4217772_+\|oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	1.04315e-149
CP028578.2\|AVZ11174.1\|4212292_4212709_-\|regulator-of-ribonuclease-activity-B	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	8.03891e-69
CP028578.2\|AVZ11170.1\|4207013_4207457_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
CP028578.2\|AVZ11171.1\|4207456_4210312_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
CP028578.2\|AVZ11169.1\|4205148_4206660_+\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP028578.2\|AVZ11168.1\|4203781_4204882_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
CP028578.2\|AVZ11173.1\|4211743_4212247_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.71083e-18
CP028578.2\|AVZ11164.1\|4198182_4199445_-\|DUF4102-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	6.37182e-82
CP028578.2\|AVZ11177.1\|4216394_4216988_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.97779e-10
CP028578.2\|AVZ11176.1\|4215797_4216250_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.50803e-70
CP028578.2\|AVZ11172.1\|4210363_4211551_-\|DUF898-family-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	3.73478e-110
CP028578.2\|AVZ11175.1\|4212870_4213875_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
CP028578.2\|AVZ11167.1\|4202699_4203782_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP028578.2\|AVZ11166.1\|4201036_4202539_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
CP028578.2\|AVZ11162.1\|4196907_4197138_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.99457e-15
CP028578.2\|AVZ11165.1\|4199889_4200909_+\|aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	8.44277e-169
CP028578.2\|AVZ11179.1\|4217902_4218298_+\|RidA-family-protein	gnl\|CDD\|100005	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	6.86533e-58

>CP028578.2|AVZ11169.1|4205148_4206660_+|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>CP028578.2|AVZ11168.1|4203781_4204882_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>CP028578.2|AVZ11167.1|4202699_4203782_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>CP028578.2|AVZ11166.1|4201036_4202539_+|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLTLEQQGATHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGVQASTEQQNNPAVKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>CP028578.2|AVZ11165.1|4199889_4200909_+|aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>CP028578.2|AVZ11164.1|4198182_4199445_-|DUF4102-domain-containing-protein
MKLNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPTVTLAEARGKRDAAKKLLSQGIDPKAEQKGAQAEIEGAYLFETIARQWHASNLTWSEDHSRRVLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVTAIMRFGVQNDLLESNPACDMAGALLSVKATHHPALPPKRIPELLERLSRYKGRLMTRLAVELTLLTFIRSSEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKRLHALSGKGEVIFPSDHDPKKVMSENTVNNALRVMGYDTKTEVCGHGFRTMARGALSESKLWNDDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDANKNGSVTPYDFARMHGK
>CP028578.2|AVZ11163.1|4197514_4198153_-|hypothetical-protein
MNNTQFDNNLFYFNRLTYITPHEVALAMNGFDYDTENDELTEVQLKEVIRLRKAITRNLQLINEYKNVSATQKVEANLLLTAAYIFQREGIVPVEIKERIENALRQQVKNKDWSDILMTLGGSELYEVGKKLRSNGRGQYRKDDEDNYSCKLIYLLIELLKRHGKVSYSDNSVIYNDIVSFCNENEILMKGVKKATFYKKIKLGKDIIKYGE
>CP028578.2|AVZ11162.1|4196907_4197138_-|AlpA-family-phage-regulatory-protein
MEYANSFSDNQTLISAKEVLRRVQRSKAWLYKQLANNTFPRPVKIGTRAISFVESEVDHWIQEQIYASRGERYENH
>CP028578.2|AVZ11893.1|4196261_4196846_-|host-cell-division-inhibitor-Icd-like-protein
METERTSVGFSIQLPCSGLFFLRCRRLISPFTAVTMNCAFVSPSSRLLSNSATTSCGKRALSCCDLLLVELVAITGSPRVRCDSVYAKKMIIKSLKCDSLKGSFKIKGAIHLVSAKPDSAATLTGLLTNPLNEVTKMAKQKCTWLFAAINRSQRNARPVMLRITADNERSARRRLAPDYVLSFAGRIPCGGEHA
>CP028578.2|AVZ11161.1|4195909_4196269_-|hypothetical-protein
MRNYPHPGERWQHERGWTVTIIRLIEASPSVALVNPEFSCEVLIRHDSDNQLSSCPLAWFEQRYTRLFDVPLLKPAPAPAGGSGSGPLTLHPSVLFIRWRERSIRRSAEPDDGHYSKFL
>CP028578.2|AVZ11170.1|4207013_4207457_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>CP028578.2|AVZ11171.1|4207456_4210312_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIDGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>CP028578.2|AVZ11172.1|4210363_4211551_-|DUF898-family-protein
MNGVNVGKDNPRHAFVFTGKGGEYFLICLVNFLLTIITLGIYGPWALVKCRRYICQHVTLKGQPFSYKGTGGAIFVSMLLIMVVYFLSISCVAGQHFVLAFLLFALLICGIPCMAVKSLQYQANMTSLNGIRFGFNCSMLRAWWVMLGLPVLLALAFWLVLYLIAQVTTSIGGLFFNLVVLSLLSVIGLGVINGITYSKWMPLLGNNATFGVHQFSIKVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLIMMSMLGQSEAGGELILQYYPQIMASYFLYFVAILVFASYLYVTLRSLFLNNLTLANGTIRFHSSVTTFGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHVQGDLDSLELTNDDKPQDSGPLMWISRGIMPYVPFI
>CP028578.2|AVZ11173.1|4211743_4212247_+|GNAT-family-N-acetyltransferase
MNVVASPALRLRKLTVADNPAIASVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>CP028578.2|AVZ11174.1|4212292_4212709_-|regulator-of-ribonuclease-activity-B
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEEDDGVRH
>CP028578.2|AVZ11175.1|4212870_4213875_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNNKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSN
>CP028578.2|AVZ11176.1|4215797_4216250_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHVKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>CP028578.2|AVZ11177.1|4216394_4216988_-|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILLDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE
>CP028578.2|AVZ11178.1|4217058_4217772_+|oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRHFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHGFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>CP028578.2|AVZ11179.1|4217902_4218298_+|RidA-family-protein
MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAPPYPNWTAVGVTWLAGFDFEIKVIARIPAQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028578_2	2.10\|1011511\|35\|CP028578\|CRT	1011511-1011545	35	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246934-246968	0	1.0
CP028578_4	4.1\|2883684\|40\|CP028578\|CRISPRCasFinder	2883684-2883723	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP028578_1	1.9\|982328\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	982328-982359	32	KT898133	Aeromonas phage phiARM81ld, complete genome	45655-45686	2	0.938
CP028578_2	2.4\|1011145\|35\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	1011145-1011179	35	NZ_CP037443	Klebsiella sp. PO552 plasmid p2, complete sequence	42676-42710	2	0.943
CP028578_3	3.1\|2212564\|38\|CP028578\|CRISPRCasFinder	2212564-2212601	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP028578_1	1.3\|981962\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	981962-981993	32	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	37866-37897	6	0.812
CP028578_1	1.5\|982084\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	982084-982115	32	KC821619	Cellulophaga phage phi18:1, complete genome	6924-6955	7	0.781
CP028578_1	1.5\|982084\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	982084-982115	32	KC821627	Cellulophaga phage phi18:2, complete genome	6924-6955	7	0.781
CP028578_1	1.1\|981840\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	981840-981871	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	107507-107538	8	0.75
CP028578_1	1.1\|981840\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	981840-981871	32	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	199281-199312	8	0.75
CP028578_1	1.4\|982023\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	982023-982054	32	MN855878	Bacteriophage sp. isolate 336, complete genome	5171-5202	8	0.75
CP028578_1	1.9\|982328\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	982328-982359	32	MN901520	Halorubrum coriense virus Hardycor2, complete genome	16524-16555	8	0.75
CP028578_1	1.5\|982084\|32\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	982084-982115	32	NZ_CP020483	Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence	383-414	9	0.719
CP028578_7	7.1\|3567202\|59\|CP028578\|CRISPRCasFinder	3567202-3567260	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
CP028578_7	7.1\|3567202\|59\|CP028578\|CRISPRCasFinder	3567202-3567260	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814
CP028578_2	2.5\|1011206\|35\|CP028578\|PILER-CR,CRISPRCasFinder,CRT	1011206-1011240	35	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	20152-20186	12	0.657

1. spacer 2.10|1011511|35|CP028578|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ccggacgcactggatgcgatgatggacatcacttg	CRISPR spacer
ccggacgcactggatgcgatgatggacatcacttg	Protospacer
***********************************

2. spacer 4.1|2883684|40|CP028578|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

3. spacer 1.9|982328|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
gacgacgagacgccctggtgcgccgcgttcgt	Protospacer
*****.**************.***********

4. spacer 2.4|1011145|35|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.943

tcggcgagtaagagtactgagtattttaatctcat	CRISPR spacer
acggcgagtaagagtgctgagtattttaatctcat	Protospacer
 **************.*******************

5. spacer 3.1|2212564|38|CP028578|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

6. spacer 1.3|981962|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

tgcacgccctgccggaatctcccctcgctctc	CRISPR spacer
tgcacgccctgccggaagatcccctcacgatt	Protospacer
*****************  *******.*  *.

7. spacer 1.5|982084|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to KC821619 (Cellulophaga phage phi18:1, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

8. spacer 1.5|982084|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to KC821627 (Cellulophaga phage phi18:2, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

9. spacer 1.1|981840|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

10. spacer 1.1|981840|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

11. spacer 1.4|982023|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

agtaagccggttgattatcgcca----gggatatta	CRISPR spacer
agtaagcaggatgattatcgccaccatggcgt----	Protospacer
******* ** ************    ** .*

12. spacer 1.9|982328|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

--gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
ccgccgcc--gacgctcgggtgtgccgcgttcgg	Protospacer
  * ** .  *****.* ***************

13. spacer 1.5|982084|32|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020483 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence) position: , mismatch: 9, identity: 0.719

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
acttttattgttttgagtgaaaataaaggcta	Protospacer
* .*********** ** ******** *

14. spacer 7.1|3567202|59|CP028578|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

15. spacer 7.1|3567202|59|CP028578|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*

16. spacer 2.5|1011206|35|CP028578|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

tcggccatagactttattaacttcattgggggtta	CRISPR spacer
atcgccatagaattttttaacttcattgcctaaag	Protospacer
 . ******** *** ************   .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1027868 : 1035008

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ08277.1\|1027868_1028507_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
AVZ08278.1\|1028503_1029766_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AVZ08279.1\|1029762_1030671_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-117	76.5
AVZ08280.1\|1030866_1031634_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-70	56.7
AVZ08281.1\|1031684_1032341_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	5.0e-51	47.0
AVZ08282.1\|1032446_1035008_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	9.2e-32	20.8

DBSCAN-SWA_2

1249630 : 1294007

Escherichia_phage(60.78%)

terminase,tail,integrase,holin

attL 1252729:1252745|attR 1292153:1292169

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ08462.1\|1249630_1251097_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.9
AVZ08463.1\|1251165_1252743_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
1252729:1252745	attL	NA	NA	NA	NA
AVZ08464.1\|1252935_1254186_+\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	2.3e-238	99.0
AVZ08465.1\|1254189_1254384_-	DUF1382 family protein	G9L698	Escherichia_phage	4.3e-27	98.4
AVZ08466.1\|1254380_1255031_-	adenine methylase	A0A2R9YJG0	Escherichia_phage	6.8e-125	97.7
AVZ11749.1\|1255023_1255275_-	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	3.1e-41	100.0
AVZ08467.1\|1255432_1255681_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
AVZ08468.1\|1255730_1256612_-	recombinase RecT	G9L6A2	Escherichia_phage	1.6e-161	100.0
AVZ08469.1\|1256608_1257430_-	exodeoxyribonuclease VIII	G9L6A3	Escherichia_phage	2.8e-160	97.1
AVZ08470.1\|1257426_1257726_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.5e-45	97.0
AVZ08471.1\|1258034_1258619_-	XRE family transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
AVZ08472.1\|1258773_1259004_+	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
AVZ08473.1\|1259154_1259355_+	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	6.0e-32	98.5
AVZ08474.1\|1259370_1260186_+	primosomal protein	Q286X4	Escherichia_phage	3.5e-118	96.0
AVZ11750.1\|1260182_1260968_+	replication protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	3.6e-152	99.6
AVZ08475.1\|1261085_1261430_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.5e-59	96.5
AVZ08476.1\|1261491_1262004_+	hypothetical protein	G9L6B1	Escherichia_phage	1.6e-44	66.7
AVZ08477.1\|1262000_1262759_+	ead/Ea22-like family protein	A0A077SLK5	Escherichia_phage	1.7e-63	62.9
AVZ08478.1\|1262760_1262997_+	hypothetical protein	A0A2D1GLS1	Escherichia_phage	3.0e-38	100.0
AVZ08479.1\|1263956_1264307_+	DUF2591 domain-containing protein	G9L6B5	Escherichia_phage	5.6e-41	72.4
AVZ08480.1\|1264299_1264638_+	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	2.0e-56	96.4
AVZ08481.1\|1264678_1265353_+\|terminase	terminase small subunit	Q287B7	Escherichia_phage	2.4e-117	98.7
AVZ08482.1\|1265349_1266825_+\|terminase	terminase	A0A0F6TK57	Escherichia_coli_O157_typing_phage	5.8e-297	99.6
AVZ08483.1\|1266915_1267272_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	1.7e-45	78.0
AVZ08484.1\|1267979_1268186_+	hypothetical protein	G9L6C1	Escherichia_phage	5.1e-10	98.5
AVZ08485.1\|1268200_1269880_+\|tail	phage tail protein	G9L6C2	Escherichia_phage	8.0e-303	99.3
AVZ08486.1\|1269876_1270173_+	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
AVZ08487.1\|1270175_1270871_+	peptidase	G9L6C4	Escherichia_phage	8.4e-89	94.8
AVZ08488.1\|1270885_1271872_+	hypothetical protein	G9L6C5	Escherichia_phage	5.6e-187	99.7
AVZ08489.1\|1271923_1272361_+	hypothetical protein	A0A0F6R7N9	Escherichia_coli_O157_typing_phage	5.3e-73	97.9
AVZ08490.1\|1272371_1272707_+	hypothetical protein	G9L6C7	Escherichia_phage	7.7e-56	100.0
AVZ08491.1\|1272757_1273081_+	hypothetical protein	A0A0F6R8M8	Escherichia_coli_O157_typing_phage	1.1e-51	96.3
AVZ08492.1\|1273080_1273686_+	hypothetical protein	G9L6C9	Escherichia_phage	2.8e-112	100.0
AVZ08493.1\|1273685_1276157_+	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	0.0e+00	99.1
AVZ08494.1\|1276156_1276621_+	hypothetical protein	G9L6D1	Escherichia_phage	8.4e-85	100.0
AVZ08495.1\|1276620_1277160_+	hypothetical protein	A0A193GYJ4	Enterobacter_phage	1.6e-47	81.8
AVZ08496.1\|1277172_1279686_+	hypothetical protein	A0A0F6R8M6	Escherichia_coli_O157_typing_phage	0.0e+00	93.9
AVZ08497.1\|1279682_1281485_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	0.0e+00	97.8
AVZ08498.1\|1281490_1283965_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	98.9
AVZ08499.1\|1284160_1284457_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	2.5e-50	100.0
AVZ08500.1\|1284488_1284650_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	2.5e-20	100.0
AVZ08501.1\|1284733_1285246_-	hypothetical protein	NA	NA	NA	NA
AVZ08502.1\|1285232_1285559_-	hypothetical protein	NA	NA	NA	NA
AVZ08503.1\|1285688_1286399_-	BRO-like protein	G9L6E2	Escherichia_phage	1.7e-100	79.8
AVZ08504.1\|1286796_1287525_+	hypothetical protein	NA	NA	NA	NA
AVZ08505.1\|1287547_1287805_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	1.7e-42	98.8
AVZ08506.1\|1288000_1290163_+	SGNH/GDSL hydrolase family protein	F8R4T7	Escherichia_phage	2.6e-152	51.0
AVZ08507.1\|1290252_1290654_+	hypothetical protein	G9L6E6	Escherichia_phage	3.4e-58	91.7
AVZ08508.1\|1290643_1290952_+\|holin	phage holin family protein	G9L6E7	Escherichia_phage	5.1e-46	93.1
AVZ08509.1\|1290941_1291571_+	glycoside hydrolase family 19 protein	G9L6E8	Escherichia_phage	6.8e-114	97.6
AVZ08510.1\|1291567_1292065_+	DUF2514 family protein	A0A193GYU6	Enterobacter_phage	8.2e-46	64.0
AVZ08511.1\|1292261_1292801_-	hypothetical protein	G9L6F0	Escherichia_phage	1.6e-42	96.6
1292153:1292169	attR	NA	NA	NA	NA
AVZ08512.1\|1292816_1293335_-	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	2.9e-62	99.4
AVZ08513.1\|1293437_1293584_-	succinate dehydrogenase	NA	NA	NA	NA
AVZ08514.1\|1293645_1293837_-	DUF2633 family protein	G9L6F2	Escherichia_phage	7.3e-27	100.0
AVZ08515.1\|1293854_1294007_+	hypothetical protein	G9L6F3	Escherichia_phage	1.7e-18	96.0

DBSCAN-SWA_3

1718308 : 1812776

Erwinia_phage(20.0%)

transposase,portal,head,plate,tRNA,terminase,capsid,tail,integrase,lysis

attL 1745550:1745571|attR 1779790:1779811

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ08882.1\|1718308_1720342_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.3e-54	27.6
AVZ08883.1\|1720473_1721583_+	protein mrp	NA	NA	NA	NA
AVZ08884.1\|1721845_1722127_+	DUF2574 family protein	NA	NA	NA	NA
AVZ08885.1\|1722419_1722962_+	type 1 fimbrial protein	NA	NA	NA	NA
AVZ08886.1\|1723041_1723716_+	fimbrial assembly protein	NA	NA	NA	NA
AVZ08887.1\|1723731_1726212_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AVZ08888.1\|1726227_1727262_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA
AVZ08889.1\|1727343_1727682_-	heavy metal resistance protein	NA	NA	NA	NA
AVZ08890.1\|1727900_1728725_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
AVZ08891.1\|1728845_1729118_+	transcriptional regulator	NA	NA	NA	NA
AVZ08892.1\|1729340_1730129_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
AVZ08893.1\|1730125_1730926_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
AVZ08894.1\|1730990_1731809_+	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.7e-24	38.5
AVZ08895.1\|1731860_1732607_+	GntR family transcriptional regulator	NA	NA	NA	NA
AVZ08896.1\|1732580_1733546_-	sugar kinase	NA	NA	NA	NA
AVZ08897.1\|1733542_1734547_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	6.4e-13	29.0
AVZ08898.1\|1734543_1735821_-	MFS transporter	NA	NA	NA	NA
AVZ08899.1\|1736077_1737130_+	fructose-bisphosphate aldolase	NA	NA	NA	NA
AVZ08900.1\|1737437_1738292_+	tagatose-1,6-bisphosphate aldolase	NA	NA	NA	NA
AVZ08901.1\|1738320_1739583_+	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
AVZ08902.1\|1739592_1740045_+	galactitol-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA
AVZ08903.1\|1740075_1740360_+	galactitol-specific phosphotransferase enzyme IIB component	NA	NA	NA	NA
AVZ08904.1\|1740363_1741719_+	galactitol permease IIC component	NA	NA	NA	NA
AVZ08905.1\|1741766_1742807_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
AVZ08906.1\|1742906_1743686_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
AVZ08907.1\|1743767_1744667_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.7e-12	29.0
AVZ08908.1\|1745072_1745390_+	hypothetical protein	NA	NA	NA	NA
1745550:1745571	attL	NA	NA	NA	NA
AVZ08909.1\|1745655_1746669_-\|integrase	integrase	Q83VS6	Escherichia_phage	1.4e-164	83.6
AVZ08910.1\|1746765_1747062_-	XRE family transcriptional regulator	Q1JS61	Enterobacteria_phage	8.6e-35	71.1
AVZ08911.1\|1747197_1747473_+	hypothetical protein	Q1JS60	Enterobacteria_phage	4.4e-41	82.2
AVZ08912.1\|1747650_1748151_+	replication protein B	M1SV55	Escherichia_phage	1.1e-77	83.1
AVZ08913.1\|1748217_1748436_+	DUF2732 family protein	S4TP68	Salmonella_phage	1.6e-09	64.0
AVZ08914.1\|1748458_1748734_+	hypothetical protein	A0A0M4R2Q0	Salmonella_phage	5.2e-18	47.7
AVZ08915.1\|1748723_1751015_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	73.7
AVZ08916.1\|1751014_1751473_+	DUF3850 domain-containing protein	Q858T3	Yersinia_virus	9.6e-41	53.0
AVZ11767.1\|1751489_1751714_+	hypothetical protein	Q6K1F0	Salmonella_virus	6.4e-14	59.4
AVZ08917.1\|1752014_1753643_+	DUF3696 domain-containing protein	NA	NA	NA	NA
AVZ08918.1\|1753645_1754758_+	hypothetical protein	NA	NA	NA	NA
AVZ08919.1\|1754853_1755861_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.1e-161	81.1
AVZ08920.1\|1755862_1757632_-	oxidoreductase	A0A218M4M1	Erwinia_phage	4.7e-301	84.7
AVZ08921.1\|1757798_1758653_+\|capsid	capsid scaffolding protein	A0A218M4L9	Erwinia_phage	4.8e-118	73.9
AVZ08922.1\|1758713_1759781_+\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	3.9e-170	83.6
AVZ08923.1\|1759784_1760540_+\|terminase	terminase	O80305	Escherichia_phage	4.6e-80	72.2
AVZ08924.1\|1760639_1761146_+\|head	head completion/stabilization protein	O80306	Escherichia_phage	1.2e-63	72.6
AVZ08925.1\|1761145_1761349_+\|tail	phage tail protein	S4TTA0	Salmonella_phage	1.3e-26	83.6
AVZ08926.1\|1761339_1761561_+	primosomal protein	A0A218M4L5	Erwinia_phage	2.2e-27	79.2
AVZ08927.1\|1761544_1762054_+	lysozyme	A0A218M4K3	Erwinia_phage	1.4e-80	86.9
AVZ08928.1\|1762050_1762476_+\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	2.1e-42	69.6
AVZ08929.1\|1762450_1762609_+\|lysis	phage lysis protein	A0A218M4L1	Erwinia_phage	3.1e-15	75.0
AVZ08930.1\|1762571_1763039_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	2.5e-60	71.6
AVZ08931.1\|1763031_1763478_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.8e-47	67.3
AVZ08932.1\|1763613_1764663_+	DUF262 domain-containing protein	NA	NA	NA	NA
AVZ08933.1\|1764649_1765228_+	hypothetical protein	NA	NA	NA	NA
AVZ08934.1\|1765491_1766133_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	7.3e-95	81.2
AVZ08935.1\|1766129_1766480_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	1.5e-38	70.7
AVZ08936.1\|1766485_1767394_+\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	5.0e-134	81.5
AVZ08937.1\|1767386_1767917_+\|tail	phage tail protein I	Q37841	Escherichia_phage	8.1e-92	87.5
AVZ08938.1\|1767928_1769614_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	6.1e-125	60.0
AVZ08939.1\|1769613_1770192_+\|tail	tail assembly chaperone	E5G6P1	Salmonella_phage	8.4e-50	52.1
AVZ08940.1\|1770327_1771521_+\|tail	phage tail protein	S4TRX2	Salmonella_phage	4.4e-186	82.9
AVZ08941.1\|1771533_1772052_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.5e-77	79.1
AVZ08942.1\|1772106_1772421_+\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.9e-27	63.9
AVZ08943.1\|1772453_1772576_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.9e-12	84.6
AVZ08944.1\|1772565_1775007_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	4.2e-308	73.8
AVZ08945.1\|1775020_1775485_+\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	3.2e-60	71.4
AVZ08946.1\|1775481_1776645_+	phage late control D family protein	Q6K1G4	Salmonella_virus	1.7e-171	79.3
AVZ08947.1\|1776725_1776947_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	4.5e-28	75.3
AVZ08948.1\|1777014_1778383_+\|transposase	IS3-like element IS150 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.3e-112	100.0
AVZ08949.1\|1778699_1779551_+	hypothetical protein	NA	NA	NA	NA
AVZ08950.1\|1779960_1781322_-	peptidase	Q6DW11	Phage_TP	1.9e-217	99.7
1779790:1779811	attR	NA	NA	NA	NA
AVZ08951.1\|1781468_1781801_-	DUF1508 domain-containing protein	NA	NA	NA	NA
AVZ08952.1\|1781991_1782714_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.7e-31	33.6
AVZ08953.1\|1782710_1784114_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.0e-32	29.0
AVZ08954.1\|1784110_1785526_-	MFS transporter	NA	NA	NA	NA
AVZ08955.1\|1785526_1788604_-	multidrug transporter subunit MdtC	NA	NA	NA	NA
AVZ08956.1\|1788604_1791727_-	multidrug resistance protein MdtB	NA	NA	NA	NA
AVZ08957.1\|1791726_1792974_-	multidrug resistance protein MdtA	NA	NA	NA	NA
AVZ11768.1\|1793252_1793309_+	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
AVZ11769.1\|1793580_1793637_+	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
AVZ11770.1\|1793909_1793969_+	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
AVZ08958.1\|1794190_1794850_+	VWA domain-containing protein	NA	NA	NA	NA
AVZ08959.1\|1794846_1795608_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
AVZ08960.1\|1795604_1797545_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
AVZ08961.1\|1797557_1798910_-	molecular chaperone	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.1e-07	20.3
AVZ08962.1\|1799043_1799901_+	DNA-3-methyladenine glycosylase 2	NA	NA	NA	NA
AVZ08963.1\|1799938_1803256_-	diguanylate cyclase	NA	NA	NA	NA
AVZ08964.1\|1803573_1804215_+	uridine kinase	A0A1V0SAA3	Catovirus	3.2e-34	36.9
AVZ08965.1\|1804306_1804888_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.3e-31	42.1
AVZ08966.1\|1804909_1806763_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
AVZ08967.1\|1807214_1808798_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	1.6e-34	42.6
AVZ11771.1\|1809555_1810446_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	9.6e-45	40.3
AVZ08968.1\|1811624_1812776_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	5.8e-42	35.3

DBSCAN-SWA_4

1829415 : 1838779

Escherichia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ08980.1\|1829415_1830822_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	6.2e-38	28.5
AVZ08981.1\|1831045_1832110_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.2e-103	53.8
AVZ08982.1\|1832136_1833006_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.9e-110	66.7
AVZ08983.1\|1833037_1833928_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.3e-29	34.6
AVZ08984.1\|1833942_1834497_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	5.6e-51	56.4
AVZ08985.1\|1834677_1835844_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	7.0e-112	53.7
AVZ08986.1\|1836139_1837120_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
AVZ11774.1\|1837158_1837275_-	ABC transporter	NA	NA	NA	NA
AVZ08987.1\|1837483_1838779_+	O9 family O-antigen ABC transporter ATP-binding protein Wzt	A0A2H4PQG7	Staphylococcus_phage	1.5e-14	27.0

DBSCAN-SWA_5

2710321 : 2767677

Escherichia_phage(41.67%)

transposase,head,portal,holin,protease,tRNA,terminase,capsid,tail,integrase

attL 2718513:2718527|attR 2767779:2767793

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ09786.1\|2710321_2711428_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AVZ11829.1\|2711463_2712105_+	lysogenization protein HflD	NA	NA	NA	NA
AVZ09787.1\|2712108_2713479_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
AVZ09788.1\|2713647_2714319_+	two-component system response regulator PhoP	NA	NA	NA	NA
AVZ09789.1\|2714318_2715779_+	sensor protein PhoQ	NA	NA	NA	NA
AVZ09790.1\|2715854_2716976_+	cupin domain-containing protein	NA	NA	NA	NA
AVZ09791.1\|2717024_2718251_-	peptidase T	NA	NA	NA	NA
AVZ11830.1\|2718306_2718522_+	hypothetical protein	NA	NA	NA	NA
AVZ09792.1\|2718500_2719637_+	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
2718513:2718527	attL	NA	NA	NA	NA
AVZ09793.1\|2719620_2720484_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
AVZ11831.1\|2721080_2721707_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AVZ09794.1\|2722384_2723908_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.7e-44	31.8
AVZ09795.1\|2724201_2724573_+	hypothetical protein	NA	NA	NA	NA
AVZ09796.1\|2725527_2726058_-\|tail	tail fiber domain-containing protein	A0A2D1UII2	Escherichia_phage	2.5e-69	85.2
AVZ09797.1\|2726059_2727272_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
AVZ09798.1\|2730663_2731263_-	Ail/Lom family protein	H6WZM8	Escherichia_phage	1.6e-107	95.0
AVZ09799.1\|2731330_2734810_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.9
AVZ09800.1\|2734870_2735518_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.6e-108	94.4
AVZ09801.1\|2735415_2736159_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.5e-149	97.2
AVZ09802.1\|2736164_2736863_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	3.4e-130	97.0
AVZ09803.1\|2736862_2737219_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
AVZ09804.1\|2737196_2740424_-\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.0
AVZ11832.1\|2740470_2740731_-	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	2.3e-39	95.3
AVZ09805.1\|2740772_2741159_-\|tail	phage tail protein	A0A1B5FP91	Escherichia_phage	8.9e-64	100.0
AVZ09806.1\|2741158_2741863_-\|tail	phage tail protein	A0A1B5FP82	Escherichia_phage	1.4e-112	92.7
AVZ09807.1\|2741923_2742268_-	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	5.1e-55	96.5
AVZ09808.1\|2742264_2742714_-	hypothetical protein	S4TR46	Salmonella_phage	6.1e-64	81.2
AVZ09809.1\|2742710_2743049_-\|head,tail	head-tail adaptor protein	A0A1B5FP90	Escherichia_phage	7.5e-51	90.2
AVZ09810.1\|2743057_2743375_-\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	5.3e-22	49.5
AVZ09811.1\|2743451_2744669_-\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	5.9e-162	71.6
AVZ09812.1\|2744683_2745283_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.9e-89	81.0
AVZ09813.1\|2745275_2746502_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.7e-204	83.3
AVZ09814.1\|2746649_2748407_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.3
AVZ09815.1\|2748406_2748889_-\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	8.7e-85	98.1
AVZ09816.1\|2749036_2749387_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	8.0e-64	96.6
AVZ09817.1\|2749679_2749820_-	Rz1 lytic protein	U5P461	Shigella_phage	1.0e-09	84.6
AVZ09818.1\|2749912_2750206_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
AVZ09819.1\|2750296_2750479_-	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	2.2e-17	77.0
AVZ09820.1\|2750531_2750759_+	hypothetical protein	NA	NA	NA	NA
AVZ09821.1\|2750695_2751229_-	lysozyme	Q08J98	Stx2-converting_phage	1.5e-98	93.2
AVZ09822.1\|2751292_2751643_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
AVZ09823.1\|2751647_2751863_-\|holin	holin	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
AVZ09824.1\|2752012_2752174_-	hypothetical protein	Q08JA2	Stx2-converting_phage	5.9e-14	87.0
AVZ09825.1\|2752170_2752359_-	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	7.2e-27	95.2
AVZ09826.1\|2752619_2752955_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	1.4e-44	74.8
AVZ09827.1\|2753025_2753238_+	hypothetical protein	NA	NA	NA	NA
AVZ11833.1\|2753726_2753813_-	DUF3927 domain-containing protein	NA	NA	NA	NA
AVZ09828.1\|2754207_2755029_-	antitermination protein	K7P7B9	Enterobacteria_phage	5.1e-77	58.2
AVZ09829.1\|2755025_2755406_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.6
AVZ09830.1\|2755406_2756465_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.5e-89	48.0
AVZ09831.1\|2756466_2756745_-	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
AVZ09832.1\|2756912_2757125_-	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	8.9e-26	96.9
AVZ09833.1\|2757327_2757507_-	hypothetical protein	NA	NA	NA	NA
AVZ09834.1\|2758159_2758342_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
AVZ09835.1\|2758435_2758792_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
AVZ09836.1\|2758849_2759272_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.6e-64	90.6
AVZ09837.1\|2759312_2760383_-	phage replisome organizer	A0A088CD36	Shigella_phage	2.6e-52	56.6
AVZ09838.1\|2760454_2760880_-	Rha family transcriptional regulator	NA	NA	NA	NA
AVZ09839.1\|2760863_2761106_-	hypothetical protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
AVZ11834.1\|2761311_2761836_+	LexA family transcriptional repressor	H9C160	Pectobacterium_phage	2.2e-12	28.0
AVZ09840.1\|2762047_2762206_+	hypothetical protein	NA	NA	NA	NA
AVZ09841.1\|2762189_2762489_+	hypothetical protein	NA	NA	NA	NA
AVZ09842.1\|2762560_2762779_+	hypothetical protein	NA	NA	NA	NA
AVZ09843.1\|2762743_2762998_-	hypothetical protein	NA	NA	NA	NA
AVZ09844.1\|2763347_2763536_+	cell division inhibition protein DicB	NA	NA	NA	NA
AVZ09845.1\|2763532_2763724_+	DUF1482 family protein	NA	NA	NA	NA
AVZ09846.1\|2763817_2766259_+	exonuclease	V5UQJ3	Shigella_phage	3.1e-114	46.9
AVZ09847.1\|2766320_2766590_+	excisionase	NA	NA	NA	NA
AVZ09848.1\|2766558_2767677_+\|integrase	integrase	Q77Z04	Phage_21	1.6e-84	44.4
2767779:2767793	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2932804 : 3059519

118

Escherichia_phage(37.1%)

holin,head,portal,protease,plate,tRNA,terminase,capsid,tail,integrase,lysis

attL 2944743:2944763|attR 3046250:3046270

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ10013.1\|2932804_2934565_+\|protease	Lon protease family protein	NA	NA	NA	NA
AVZ11844.1\|2934633_2935152_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AVZ10014.1\|2935221_2935389_-	ribosome modulation factor	NA	NA	NA	NA
AVZ10015.1\|2935644_2936208_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
AVZ10016.1\|2936204_2937845_-	paraquat-inducible protein B	NA	NA	NA	NA
AVZ10017.1\|2937849_2939103_-	paraquat-inducible protein A	NA	NA	NA	NA
AVZ10018.1\|2939232_2941140_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.9e-54	29.8
AVZ10019.1\|2941151_2943260_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AVZ10020.1\|2943503_2944613_+	MOSC domain-containing protein	NA	NA	NA	NA
AVZ10021.1\|2944609_2945152_-	cell division protein ZapC	NA	NA	NA	NA
2944743:2944763	attL	NA	NA	NA	NA
AVZ10022.1\|2945325_2946336_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
AVZ10023.1\|2946446_2947157_-	pili assembly chaperone	NA	NA	NA	NA
AVZ10024.1\|2947149_2947665_-	type 1 fimbrial protein	NA	NA	NA	NA
AVZ10025.1\|2947672_2948215_-	fimbrial protein	NA	NA	NA	NA
AVZ10026.1\|2948226_2949297_-	fimbrial protein	NA	NA	NA	NA
AVZ10027.1\|2949287_2951888_-	usher protein ElfC	NA	NA	NA	NA
AVZ10028.1\|2951912_2952614_-	fimbrial chaperone protein ElfD	NA	NA	NA	NA
AVZ10029.1\|2952696_2953236_-	fimbrial subunit ElfA	NA	NA	NA	NA
AVZ10030.1\|2953591_2954167_+	NAD(P)H-dependent FMN reductase	NA	NA	NA	NA
AVZ10031.1\|2954159_2955119_+	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
AVZ10032.1\|2955115_2956261_+	alkanesulfonate monooxygenase	NA	NA	NA	NA
AVZ10033.1\|2956271_2957063_+	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
AVZ10034.1\|2957059_2957827_+	aliphatic sulfonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.7e-30	38.0
AVZ10035.1\|2957869_2960482_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	7.0e-19	22.8
AVZ10036.1\|2960747_2961950_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AVZ10037.1\|2962118_2963519_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.3e-82	36.1
AVZ10038.1\|2964121_2965210_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.8e-98	54.3
AVZ10039.1\|2965225_2965408_-	hypothetical protein	NA	NA	NA	NA
AVZ10040.1\|2965394_2966585_+	aspartate aminotransferase	NA	NA	NA	NA
AVZ10041.1\|2966806_2967454_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AVZ11845.1\|2967480_2968029_-	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	7.0e-06	33.7
AVZ10042.1\|2968209_2970057_-	transpeptidase	NA	NA	NA	NA
AVZ10043.1\|2970317_2974778_-	chromosome partition protein MukB	NA	NA	NA	NA
AVZ10044.1\|2974777_2975482_-	condensin subunit E	NA	NA	NA	NA
AVZ10045.1\|2975462_2976785_-	chromosome partition protein MukF	NA	NA	NA	NA
AVZ10046.1\|2976781_2977567_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
AVZ10047.1\|2977702_2978482_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
AVZ10048.1\|2978458_2979352_-	hypothetical protein	NA	NA	NA	NA
AVZ10049.1\|2979505_2980252_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
AVZ10050.1\|2980248_2980431_-	protein YcaR	NA	NA	NA	NA
AVZ10051.1\|2980482_2981715_-	winged helix DNA-binding protein YcaQ	NA	NA	NA	NA
AVZ10052.1\|2981751_2982738_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
AVZ10053.1\|2982734_2984483_-	lipid A export ATP-binding/permease MsbA	W8CYL7	Bacillus_phage	2.5e-57	29.8
AVZ10054.1\|2984519_2986784_-	ComEC family protein	NA	NA	NA	NA
AVZ10055.1\|2986991_2987276_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
AVZ10056.1\|2987435_2989109_-	30S ribosomal protein S1	NA	NA	NA	NA
AVZ10057.1\|2989219_2989903_-	cytidylate kinase	NA	NA	NA	NA
AVZ10058.1\|2990075_2990840_-\|protease	metalloprotease	NA	NA	NA	NA
AVZ10059.1\|2991008_2992292_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AVZ10060.1\|2992362_2993451_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	M1Q1P2	Streptococcus_phage	3.5e-81	46.8
AVZ10061.1\|2993649_2994342_-	DUF421 domain-containing protein	NA	NA	NA	NA
AVZ10062.1\|2994471_2996232_+	30S ribosomal protein S12 methylthiotransferase accessory factor YcaO	NA	NA	NA	NA
AVZ10063.1\|2996637_2997495_+	formate transporter FocA	NA	NA	NA	NA
AVZ10064.1\|2997549_2999832_+	formate acetyltransferase 1	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
AVZ10065.1\|3000150_3000405_-	DNA-binding transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	6.1e-45	100.0
AVZ10066.1\|3000450_3001614_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	4.8e-206	99.5
AVZ10067.1\|3001613_3002093_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.5e-84	99.4
AVZ10068.1\|3002107_3004555_-\|tail	phage tail tape measure protein	U5N0T4	Enterobacteria_phage	0.0e+00	96.4
AVZ11846.1\|3004547_3004667_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
AVZ10069.1\|3004699_3004975_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
AVZ10070.1\|3005031_3005550_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
AVZ10071.1\|3005562_3006753_-\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	6.2e-225	99.7
AVZ10072.1\|3006812_3007406_-	DNA-invertase	A0A0F7LA37	Escherichia_phage	3.0e-103	96.4
AWY02704.1\|3007436_3007931_+\|tail	phage tail protein	K7PH60	Enterobacterial_phage	1.2e-68	81.0
AVZ10074.1\|3007930_3008524_+\|tail	tail fiber assembly protein	K7PMC4	Enterobacterial_phage	4.9e-53	50.8
AVZ10073.1\|3008495_3008912_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.2e-21	46.8
AWY02703.1\|3008914_3010210_-\|tail	phage tail protein	A0A0F7LBW5	Escherichia_phage	7.7e-144	88.8
AVZ10076.1\|3010206_3010818_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.1e-116	99.0
AVZ10077.1\|3010810_3011719_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	2.2e-161	99.3
AVZ10078.1\|3011723_3012071_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
AVZ10079.1\|3012067_3012703_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	6.5e-112	97.6
AVZ10080.1\|3012769_3013222_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	2.4e-76	99.3
AVZ10081.1\|3013214_3013682_-\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	1.9e-81	98.7
AVZ10082.1\|3013644_3013818_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	2.3e-24	96.5
AVZ10083.1\|3013789_3014215_-\|lysis	LysB family phage lysis regulatory protein	Q7Y4E2	Escherichia_virus	5.5e-67	97.2
AVZ10084.1\|3014202_3014628_-	protein lysA	A0A0F7LBP4	Escherichia_phage	8.6e-60	96.5
AVZ10085.1\|3014642_3015140_-	lysozyme	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
AVZ10086.1\|3015139_3015421_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
AVZ10087.1\|3015424_3015628_-\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	2.6e-30	98.5
AVZ10088.1\|3015627_3016137_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
AVZ10089.1\|3016236_3016980_-\|terminase	terminase	Q94MK6	Enterobacteria_phage	7.3e-123	97.6
AVZ10090.1\|3016983_3018057_-\|capsid	phage major capsid protein, P2 family	Q94MK7	Enterobacteria_phage	5.1e-202	99.7
AVZ10091.1\|3018115_3018970_-\|capsid	capsid scaffolding protein	Q94MB7	Escherichia_virus	1.7e-139	89.4
AVZ10092.1\|3019143_3020916_+	oxidoreductase	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.7
AVZ10093.1\|3020915_3021950_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	1.9e-201	100.0
AVZ10094.1\|3022284_3024099_-	ATP-binding protein	NA	NA	NA	NA
AVZ10095.1\|3024085_3025333_-	hypothetical protein	NA	NA	NA	NA
AVZ10096.1\|3025535_3027656_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	96.0
AVZ10097.1\|3027645_3027921_-	hypothetical protein	Q858T5	Yersinia_virus	6.6e-45	98.9
AVZ10098.1\|3027917_3028142_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	8.5e-35	98.6
AVZ10099.1\|3028141_3028444_-	hypothetical protein	A0A0F7LDT6	Escherichia_phage	2.5e-45	97.0
AVZ10100.1\|3028443_3028668_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
AVZ10101.1\|3028731_3029232_-	replication protein B	S4TTB7	Salmonella_phage	1.0e-91	100.0
AVZ10102.1\|3029228_3029426_-	hypothetical protein	A0A0F7LDS9	Escherichia_phage	2.8e-29	100.0
AVZ11848.1\|3029409_3029766_-	hypothetical protein	Q1JS28	Enterobacteria_phage	1.5e-62	99.2
AVZ10103.1\|3029874_3030174_+	XRE family transcriptional regulator	Q1JS29	Enterobacteria_phage	3.0e-51	100.0
AVZ10104.1\|3030267_3031263_+\|integrase	site-specific integrase	A0A0F7LBR0	Escherichia_phage	7.1e-190	99.7
AVZ10105.1\|3031294_3032092_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.3e-21	26.6
AVZ10106.1\|3032173_3032764_-	NAD(P)H oxidoreductase	NA	NA	NA	NA
AVZ10107.1\|3032863_3033772_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVZ10108.1\|3033772_3035203_-	inner membrane transporter YcaM	NA	NA	NA	NA
AVZ10109.1\|3035412_3036561_-	MFS transporter	NA	NA	NA	NA
AVZ10110.1\|3036874_3037501_+	hydrolase	NA	NA	NA	NA
AVZ10111.1\|3037535_3038399_-	dimethyl sulfoxide reductase subunit C	NA	NA	NA	NA
AVZ10112.1\|3038400_3039018_-	dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
AVZ10113.1\|3039028_3041473_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
AVZ10114.1\|3041711_3043004_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
AVZ10115.1\|3043094_3044438_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
AVZ10116.1\|3044448_3045060_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AVZ10117.1\|3045218_3049208_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
3046250:3046270	attR	NA	NA	NA	NA
AVZ10118.1\|3049342_3049837_-	leucine-responsive regulatory protein	NA	NA	NA	NA
AVZ10119.1\|3050381_3051347_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
AVZ10120.1\|3051469_3053236_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	1.8e-23	24.3
AVZ10121.1\|3053236_3054958_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	9.9e-22	25.4
AVZ10122.1\|3054999_3055704_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AVZ10123.1\|3055988_3056207_+	translation initiation factor IF-1	NA	NA	NA	NA
AVZ10124.1\|3056891_3059168_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.5e-166	42.5
AVZ10125.1\|3059198_3059519_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4

DBSCAN-SWA_7

3727287 : 3781439

Enterobacteria_phage(35.19%)

transposase,portal,head,holin,terminase,capsid,tail,integrase,lysis

attL 3729769:3729816|attR 3777536:3777583

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ10734.1\|3727287_3728211_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	2.2e-177	100.0
AVZ10735.1\|3728398_3729607_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	7.7e-130	56.5
3729769:3729816	attL	NA	NA	NA	NA
AVZ10736.1\|3729881_3730034_-	hypothetical protein	NA	NA	NA	NA
AVZ10737.1\|3730563_3731409_+	ParA family protein	A0A1X9IGI7	Lactococcus_phage	5.0e-35	38.0
AVZ10738.1\|3731401_3731800_+	hypothetical protein	NA	NA	NA	NA
AVZ10739.1\|3731799_3732465_+	hypothetical protein	NA	NA	NA	NA
AVZ10740.1\|3733395_3735285_+	DUF262 domain-containing protein	NA	NA	NA	NA
AVZ10741.1\|3735537_3736044_+	hypothetical protein	NA	NA	NA	NA
AVZ10742.1\|3736046_3736457_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.2e-20	43.3
AVZ10743.1\|3736437_3736671_-	hypothetical protein	NA	NA	NA	NA
AVZ10744.1\|3736951_3738165_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
AVZ10745.1\|3741044_3741644_-	Ail/Lom family protein	A5LH44	Enterobacteria_phage	6.3e-109	97.0
AVZ10746.1\|3741714_3745212_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	97.3
AVZ10747.1\|3745272_3745944_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.2e-103	99.6
AVZ10748.1\|3745841_3746585_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.3e-148	97.2
AVZ10749.1\|3746590_3747289_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
AVZ10750.1\|3747288_3747618_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
AVZ10751.1\|3747614_3750194_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	86.7
AVZ10752.1\|3750186_3750621_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
AVZ10753.1\|3750602_3751025_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	5.9e-61	86.4
AVZ11873.1\|3751040_3751781_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	7.8e-125	94.3
AVZ10754.1\|3751788_3752184_-\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	5.0e-70	99.2
AVZ10755.1\|3752180_3752759_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
AVZ10756.1\|3752770_3753124_-\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	2.9e-61	98.3
AVZ10757.1\|3753135_3753531_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	3.1e-56	93.9
AVZ10758.1\|3753572_3754598_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	2.9e-186	96.8
AVZ10759.1\|3754653_3754986_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	4.6e-53	96.4
AVZ10760.1\|3754995_3756315_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-232	98.4
AVZ10761.1\|3756295_3757897_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	5.5e-309	98.9
AVZ10762.1\|3757893_3758100_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AVZ10763.1\|3758096_3760022_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
AVZ10764.1\|3759996_3760542_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
AVZ11874.1\|3760681_3760825_-	DNA-packaging protein	NA	NA	NA	NA
AVZ10765.1\|3760930_3761164_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	96.3
AVZ10766.1\|3761220_3761631_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
AVZ10767.1\|3761676_3761841_+	hypothetical protein	NA	NA	NA	NA
AVZ10768.1\|3761981_3762134_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
AVZ10769.1\|3762121_3762559_-\|lysis	lysis protein	Q716B4	Shigella_phage	3.0e-68	95.9
AVZ10770.1\|3762555_3763032_-	lysozyme	K7PKV2	Enterobacteria_phage	1.9e-84	94.9
AVZ10771.1\|3763035_3763362_-\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	1.2e-56	99.1
AVZ10772.1\|3763762_3764512_+	TIGR04255 family protein	NA	NA	NA	NA
AVZ10773.1\|3764875_3765490_+	hypothetical protein	A0A2D1GNI4	Pseudomonas_phage	9.9e-33	36.4
AVZ10774.1\|3765515_3765860_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	7.2e-57	89.4
AVZ10775.1\|3765878_3766868_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.9e-195	99.7
AVZ10776.1\|3766875_3767673_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	9.8e-150	98.9
AVZ10777.1\|3767692_3768082_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
AVZ10778.1\|3768078_3768405_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	9.2e-54	100.0
AVZ10779.1\|3768401_3769055_-	phage N-6-adenine-methyltransferase	Q8SBE9	Shigella_phage	2.8e-126	99.1
AVZ10780.1\|3769054_3769549_-	PerC family transcriptional regulator	S5FUZ7	Shigella_phage	4.7e-86	99.4
AVZ10781.1\|3769545_3770487_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.2e-140	93.3
AVZ10782.1\|3770476_3770656_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
AVZ11875.1\|3770831_3771383_-	hypothetical protein	S5FXP0	Shigella_phage	7.6e-101	98.9
AVZ10783.1\|3771420_3771621_-	cell division protein	NA	NA	NA	NA
AVZ10784.1\|3771718_3772345_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	5.5e-47	48.8
AVZ11876.1\|3772572_3773133_-	hypothetical protein	NA	NA	NA	NA
AVZ10785.1\|3773558_3773921_+	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
AVZ10786.1\|3773986_3774811_+	DUF2303 family protein	U5P439	Shigella_phage	1.7e-149	99.6
AVZ10787.1\|3774938_3775475_+	HD family hydrolase	U5P0T3	Shigella_phage	4.3e-101	100.0
AVZ10788.1\|3775465_3775828_+	hypothetical protein	U5P092	Shigella_phage	2.1e-67	100.0
AVZ10789.1\|3775827_3776133_+	hypothetical protein	U5P0J0	Shigella_phage	2.6e-50	99.0
AVZ10790.1\|3776132_3776483_+	DNA-binding protein	U5P4J3	Shigella_phage	4.9e-61	100.0
AVZ11877.1\|3776584_3777523_+\|integrase	site-specific integrase	U5P434	Shigella_phage	1.8e-182	99.4
AVZ10791.1\|3777727_3778981_-	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	9.8e-96	47.2
3777536:3777583	attR	NA	NA	NA	NA
AVZ10792.1\|3778992_3780096_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AVZ10793.1\|3780383_3781439_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.6e-118	61.1

DBSCAN-SWA_8

3791573 : 3854885

uncultured_Caudovirales_phage(20.0%)

transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ10806.1\|3791573_3792071_-\|transposase	transposase	NA	NA	NA	NA
AVZ10807.1\|3792246_3792996_-	endopeptidase	A0A1V0DZX6	Clostridioides_phage	9.0e-20	38.5
AVZ10808.1\|3793205_3793466_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
AVZ10809.1\|3793468_3793747_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA
AVZ10810.1\|3793902_3794643_+	transpeptidase	NA	NA	NA	NA
AVZ10811.1\|3794613_3795381_-	class II glutamine amidotransferase	NA	NA	NA	NA
AVZ10812.1\|3795586_3796165_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
AVZ10813.1\|3796404_3798849_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AVZ10814.1\|3798891_3799365_-	inhibitor of vertebrate lysozyme	NA	NA	NA	NA
AVZ10815.1\|3799518_3800289_+	hydrolase YafV	NA	NA	NA	NA
AVZ10816.1\|3800329_3801466_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AVZ10817.1\|3801896_3802289_-	hypothetical protein	NA	NA	NA	NA
AVZ10818.1\|3802266_3806499_-	RHS repeat family protein	A0A2H4JHK7	uncultured_Caudovirales_phage	6.4e-22	43.1
AVZ10819.1\|3806574_3808716_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.4e-25	25.0
AVZ10820.1\|3808755_3808893_-	hypothetical protein	NA	NA	NA	NA
AVZ10821.1\|3808925_3809444_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
AVZ10822.1\|3810138_3810639_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AVZ10823.1\|3810673_3810898_+	hypothetical protein	NA	NA	NA	NA
AVZ10824.1\|3810948_3812424_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AVZ10825.1\|3812430_3812844_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AVZ10826.1\|3812847_3814698_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AVZ10827.1\|3814661_3815744_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AVZ10828.1\|3815768_3817049_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AVZ10829.1\|3817045_3817570_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AVZ10830.1\|3817572_3818904_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AVZ10831.1\|3818908_3819670_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AVZ10832.1\|3819678_3822444_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-81	30.8
AVZ10833.1\|3822440_3823184_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
AVZ10834.1\|3823122_3824601_+	type VI secretion system protein TssA	NA	NA	NA	NA
AVZ10835.1\|3824679_3828144_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AVZ10836.1\|3828154_3829507_+	hypothetical protein	NA	NA	NA	NA
AVZ10837.1\|3829530_3830013_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
AVZ10838.1\|3830056_3830971_+	hypothetical protein	NA	NA	NA	NA
AVZ10839.1\|3830980_3831460_+	hypothetical protein	NA	NA	NA	NA
AVZ10840.1\|3831596_3832382_-	hypothetical protein	NA	NA	NA	NA
AVZ10841.1\|3832799_3832979_+	hypothetical protein	NA	NA	NA	NA
AVZ11879.1\|3832918_3833650_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	4.5e-40	39.0
AVZ10842.1\|3833714_3834182_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
AVZ10843.1\|3834178_3834901_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AVZ10844.1\|3834934_3835690_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AVZ10845.1\|3835761_3837120_+	lytic transglycosylase	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
AVZ10846.1\|3837167_3837791_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AVZ10847.1\|3837794_3838595_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
AVZ10848.1\|3838835_3839750_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVZ10849.1\|3839746_3840550_-	2,5-diketo-D-gluconic acid reductase B	A0A1V0SDE7	Indivirus	2.4e-39	36.2
AVZ10850.1\|3846309_3846885_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
AVZ10851.1\|3847072_3848104_+	methionine import ATP-binding protein MetN	G9BWD6	Planktothrix_phage	9.4e-36	39.7
AVZ10852.1\|3848096_3848750_+	methionine ABC transporter	NA	NA	NA	NA
AVZ10853.1\|3848789_3849605_+	methionine ABC transporter substrate-binding protein MetQ	NA	NA	NA	NA
AVZ10854.1\|3849722_3850127_+	Rcs stress response system protein RcsF	NA	NA	NA	NA
AVZ10855.1\|3850123_3850831_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AVZ10856.1\|3850942_3852661_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
AVZ10857.1\|3852714_3853539_+	endopeptidase	NA	NA	NA	NA
AVZ10858.1\|3853738_3854449_-	lipoprotein NlpE	NA	NA	NA	NA
AVZ10859.1\|3854462_3854885_-\|tRNA	peptidyl-tRNA hydrolase ArfB	NA	NA	NA	NA

DBSCAN-SWA_9

4153378 : 4182866

Escherichia_phage(22.22%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ11126.1\|4153378_4154764_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.9e-257	89.1
AVZ11127.1\|4155002_4156376_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
AVZ11128.1\|4156739_4156949_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	5.9e-06	96.0
AVZ11129.1\|4157111_4157369_-	biofilm development YmgB/AriR family protein	NA	NA	NA	NA
AVZ11130.1\|4159119_4159641_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
AVZ11131.1\|4159637_4160591_+	fec operon regulator FecR	NA	NA	NA	NA
AVZ11132.1\|4160677_4163002_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AVZ11133.1\|4163046_4163949_+	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
AVZ11134.1\|4163945_4164944_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
AVZ11135.1\|4164940_4165897_+	iron-dicitrate ABC transporter permease FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
AVZ11136.1\|4165897_4166665_+	Fe(3+) dicitrate transport ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
AVZ11137.1\|4167222_4167636_-	hypothetical protein	NA	NA	NA	NA
AVZ11138.1\|4168130_4169654_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.7e-44	31.8
AVZ11139.1\|4169947_4170385_+	hypothetical protein	NA	NA	NA	NA
AVZ11140.1\|4171235_4172057_+	carbohydrate transporter	NA	NA	NA	NA
AVZ11141.1\|4172059_4173148_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AVZ11142.1\|4173152_4174103_+	DUF535 domain-containing protein	NA	NA	NA	NA
AVZ11143.1\|4176068_4177208_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.5e-68	45.1
AVZ11144.1\|4177355_4179359_+\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	7.5e-21	25.9
AVZ11145.1\|4179303_4179462_+\|holin	choline transporter	NA	NA	NA	NA
AVZ11146.1\|4179421_4180699_+	DUF2254 domain-containing protein	NA	NA	NA	NA
AVZ11147.1\|4180978_4182141_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-50	40.2
AVZ11148.1\|4182207_4182426_+	TetR family transcriptional regulator	NA	NA	NA	NA
AVZ11149.1\|4182476_4182866_-\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	1.9e-61	99.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028576

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028578

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection