CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024869	Dietzia sp. JS16-p6b chromosome, complete genome	2 crisprs	DEDDh,cas3,DinG,csa3,WYL,cas4,RT	0	3	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP024869_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024869_2

1458922-1459015

Orphan

Consensus_repeat	Method
GGTCAGCCGTGGCGGCGGACCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024869_2

>merge|CP024869|2|1458922-1459015|CRISPRCasFinder
GGTCAGCCGTGGCGGCGGACCACCGGCCCCGCTCACCCGTGGCGGCGGACCACCGGGCCCGCCCGGAACCCGCTCAGCCGTGGCGGCGGACCAC

>CP024869|2|1|1458922-1459015|CRISPRCasFinder
GGTCAGCCGTGGCGGCGGACCAC	CGGCCCCGCTCACCCGTGGCGGCGGACCACCGGGCCCGCCCGGAACCC
GCTCAGCCGTGGCGGCGGACCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP024869.1\|AVZ39190.1\|1469250_1469970_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
CP024869.1\|AVZ39187.1\|1461198_1461564_+\|RNA-binding-protein-S4	unknown	unknown	gnl\|CDD\|224109
CP024869.1\|AVZ41123.1\|1471196_1472078_+\|nicotinate-nucleotide-diphosphorylase-(carboxylating)	unknown	unknown	gnl\|CDD\|236125
CP024869.1\|AVZ39189.1\|1466274_1468434_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
CP024869.1\|AVZ39180.1\|1451267_1454822_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
CP024869.1\|AVZ39193.1\|1472721_1473255_-\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ39182.1\|1456146_1457925_-\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
CP024869.1\|AVZ41122.1\|1450286_1451255_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
CP024869.1\|AVZ39176.1\|1446902_1447901_-\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ39179.1\|1449538_1450261_+\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ39181.1\|1454864_1456139_+\|threonine-dehydratase	unknown	unknown	gnl\|CDD\|236318
CP024869.1\|AVZ39184.1\|1458661_1458898_+\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ39192.1\|1472107_1472668_+\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ39188.1\|1464073_1466218_-\|glycogen-debranching-enzyme-GlgX	unknown	unknown	gnl\|CDD\|131155
CP024869.1\|AVZ39186.1\|1460105_1461035_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379128
CP024869.1\|AVZ39178.1\|1448540_1449467_+\|RNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|161659
CP024869.1\|AVZ39183.1\|1457979_1458657_+\|IMPACT-family-protein	unknown	unknown	gnl\|CDD\|224653
CP024869.1\|AVZ39191.1\|1470042_1471128_+\|quinolinate-synthase	unknown	unknown	gnl\|CDD\|236489
CP024869.1\|AVZ39194.1\|1473331_1474225_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
CP024869.1\|AVZ39177.1\|1447972_1448548_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|237810

Protein	Function_ID	Function_description	E-value
CP024869.1\|AVZ39190.1\|1469250_1469970_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	5.97588e-15
CP024869.1\|AVZ39187.1\|1461198_1461564_+\|RNA-binding-protein-S4	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	5.18161e-24
CP024869.1\|AVZ41123.1\|1471196_1472078_+\|nicotinate-nucleotide-diphosphorylase-(carboxylating)	gnl\|CDD\|236125	PRK07896, PRK07896, carboxylating nicotinate-nucleotide diphosphorylase.	2.78885e-148
CP024869.1\|AVZ39177.1\|1447972_1448548_+\|signal-peptidase-II	gnl\|CDD\|237810	PRK14764, PRK14764, lipoprotein signal peptidase; Provisional.	7.26729e-63
CP024869.1\|AVZ39182.1\|1456146_1457925_-\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP024869.1\|AVZ39178.1\|1448540_1449467_+\|RNA-pseudouridine-synthase	gnl\|CDD\|161659	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family. In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP\|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine. [Protein synthesis, tRNA and rRNA base modification].	2.56673e-104
CP024869.1\|AVZ41122.1\|1450286_1451255_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	1.78107e-91
CP024869.1\|AVZ39181.1\|1454864_1456139_+\|threonine-dehydratase	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
CP024869.1\|AVZ39180.1\|1451267_1454822_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
CP024869.1\|AVZ39188.1\|1464073_1466218_-\|glycogen-debranching-enzyme-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP024869.1\|AVZ39186.1\|1460105_1461035_+\|hypothetical-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.000393235
CP024869.1\|AVZ39189.1\|1466274_1468434_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.38813e-55
CP024869.1\|AVZ39183.1\|1457979_1458657_+\|IMPACT-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	8.33363e-48
CP024869.1\|AVZ39194.1\|1473331_1474225_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	3.45609e-64
CP024869.1\|AVZ39191.1\|1470042_1471128_+\|quinolinate-synthase	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	1.14706e-171

>CP024869.1|AVZ39184.1|1458661_1458898_+|hypothetical-protein
MSMQPYQPNSIEAQKQQVRKDARTTAIALGVTVVALPIALFASSFFTVVAILAGIVAIYKGNQVRQAISGKPKNRELY
>CP024869.1|AVZ39183.1|1457979_1458657_+|IMPACT-family-protein
MTDSATRVLRLSAGPDVTGTYEERRSRFLAVLRRCDDEAAARDLISDLRRAHPDARHHCSAFLVDVPGSSRIERSNDDGEPSGTAGTPMLEVLRGSRVTGVGAVVVRWFGGTRLGTGGLVRAYGSAVSSAVDEAWRAGRIVEVTRTPAWRAEVDHSLAGGLEGAVRAAGAQVLGVDYGGRVELTVAGDLEVLGPILATRTSGGVEWEPAGVATTENAARLRDVES
>CP024869.1|AVZ39182.1|1456146_1457925_-|malto-oligosyltrehalose-trehalohydrolase
MTSASSDTFSVWAPTAEAVGLVLDSADADPFPMTRAADGWWSSTVVREQGRDYGFVVTGDDGQTSDPRPDPRSPRQPHGVHGLSRVHRVDATRWSDAHWTGRQLAGSVLYEMHVGTFSPVGTLTSAIDHLDDLVELGVDMVEVMPVGAFNGEYGWGYDGVAWFAVHEPYGGPDAFQQFVDACHARGLGVCLDVVYNHLGPSGNYLPEFGPYLSAADGPWGSGLNLDGPHSGEVRRYIIDNALRWFDEFHVDALRLDAVHALHDGSAVHLLEQLAVEVESLSAHLGRPLSLIAESDQNDPRLVTAREGGGLGLTGQWDDDVHHAVHAAVSGERQGYYADFGSLEALRQVLTGAFLHAGTWSAFRGRVHGRPLDVERVPGSRFVAYTLTHDQVGNRAAGDRPSVNLTPAQQLAKAAIILCSPFTPMLFQGEEWGARTPFCFFTSHPEPDLAEAVRRGRTREFAEMGWDPATVADPQDPETFRRSVLDRSEQSEDQHAGILRGYRALIALRRAEPELSDPWLGAVRVRCGVEADDGRWLIVHRGSLALVVNLGTEPSRVPVTGDEVLTSGAVVDHDSVFCQAFGFAVVRTHTVTG
>CP024869.1|AVZ39181.1|1454864_1456139_+|threonine-dehydratase
MTVTDSAATQVVTPDDIDTAARRIGDVILASELHQSERLSEQTGATILLKREDQQAVRSYKIRGAYNLMSQLTGDERSAGVVTASAGNHAQGVAFACRSLGINGRIYVPTNTPKQKRDRILAHGRNWVELVVTGVNFDAAQAAARADAERTGATMVPPFDHPDTMAGQGTIAAEILAQLDSVPDAVVVPVGGGGLVGGLATYLAEYAPDCKVIAVEPAGAPSLTRALEAGEPVTLDTVDTFVDGASVARLGDFPFGVISSMTERIQVLTVDEGAVCTAMLELYQNEGIIAEPAGALAVTALDQLDIEEGATVVCIISGGNNDVSRYSEIIERSLVHQGLKHYFLVKFPQEPGQLRRFLDEVLGPEDDITQFEYLKRNNREYGAALVGIELGSATGLHSLLERMDASRIDCERLEPGTAAYEYLT
>CP024869.1|AVZ39180.1|1451267_1454822_+|DNA-polymerase-III-subunit-alpha
MGGSQFVHLHNHTEFSMLDGMAQITPLFAEASRLGMPAVGMTDHGNMYGSSDFYKQAVKTGITPIIGIEAYVAPESRFNKKRVLWGEKHQKGDDVAGSGAYTHMTMLAENATGLRNLFLLSSLASYEGQLGKWARMDAEILAEHSEGIIATSGCPSGEIQTRLRLGQRKEAYEAAEKWQSIFGKDNFFLELMDHGIDIERRVREDLVALGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQTGKTLADENRFKFDGDGYFLKSADEMRAQWDPEVPGGCDNTLWIAERVQPYDEIWAPRDRMPKFPVPEGETEDTWLAREVHKGLEWRFPAGVPQEYLDRAQFELEVIKGKGYPGYFLVVGDLIEYARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYASEKWGSDKIAQVITFGTIKTKAAIKDAARVNFGQPGYAIADRITKALPPAIMAKDIPLSGITDPTHERYGEASEVRQLIETDPDVKRIYDTARGLEGMVRQAGVHACAVIMSSEPLLDVIPMWKRAQDGALITGWDYPSCEDIGLLKMDFLGLRNLTVIGDCLENIKSNRGEEIDLDTLSTDDQATYDLLASGDTLGVFQLDSGGMRELLKRMKPTGFNDIVAALALYRPGPMGMGTHWNYADRKNGKQELTPIHPELEEPLKEILGETHGLIVYQEQIMAISRELAGYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMGERGFSKEAVDALWGTIEPFASYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGIRVLPPSVNESLTNFVSVGEDIRFGMGAVRNVGTHVVDSVVSARKEKGEFTDFSDYLAKIDQTACTKKVTESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDAEDAGGASAFSDVFAVRVPDEEWDIKQKLALEREMLGLYVSGHPLDGLESALAAKTDTSIATIHEGELPHGTAVTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFPKTYRLAALDIAEDAVVLVKARINIREDRVSVFGDTLEVPDLVVGGNGAPLALTLPTKMCTIETVTALKQVLGRHPGPSDVHLRLVNGTSSTVLRLDDHLRVETSSSLMGDLKALLGPGCLTG
>CP024869.1|AVZ41122.1|1450286_1451255_+|EamA-family-transporter-RarD
MRDRGVVIGKRDPTDRSVAIGMLAGACAYTLWGFFPAFFPLLEPAGAVEIVGHRVVWSLVIMALVLSVTRRWRQLWSLDRLSWARIAGAAGFITVNWGVYVYTVNSERVTEAALGYTINPLVSVLLGVLIFRERLNRPQVGAVALAVVAVGVLTAGYGHVPYLSLLLATSFGFYGVVKKKLRADPVVGMTGEVLVIAPLALSVLVWLGVTGAGTFTGHGVGHSALLAASGVVTVVPLLLFATAAQRIPLATVGMLQYIIPILQMAWGLLVVGERLDAVQWAGFALIWTAVIVFTLAGRSPRSARAGVSGRVGAATYTGPDKP
>CP024869.1|AVZ39179.1|1449538_1450261_+|hypothetical-protein
MGVVIVLALVAVLTALRTELPRNPGVMSDALGPENGELVDDYLARAAGSLVDDGEPGDDGEDPATGADAPRWALVTAARPWSAAEAAAVVRGLPRVSGLYVQVPVDGVAMPVTGVTLAEPAAGESGREPVLDRGLAEVVHRSGGEVPTGPGGQAPPDADRAAATAALTAARIRSGEPAIIGLLARGTPAQLREAAGRPWVRAVEALPADAVWQRFAVRPLQPQQVDAALPLPDDAPVPSA
>CP024869.1|AVZ39178.1|1448540_1449467_+|RNA-pseudouridine-synthase
MGELRTFPVPDGLDGMRVDAGVSRLLGLSRTAVADLAGQGKVLVDGRAVGKSDKLTGMSWIEVEMPDPRAEPAVVAEPVEGMAVVYSDADLVVVDKPVGVAAHASVGWTGPTVIGGLAAAGYRISTSGPPERKGIVHRLDVGTSGLMVVAASERAYTLLKRAFRDRTVDKTYHALVQGHPDPLSGTIDAPIGRHTSNDWRFAVTSDGKHSITHYDTLEAHQAATLVEVKLETGRTHQIRVHFSALHHPCAGDLTYGADPVLARRLGLERQWLHAVGLGFDHPGTGERVDFTSPYPDDLQHALDALRAA
>CP024869.1|AVZ39177.1|1447972_1448548_+|signal-peptidase-II
MTETNGTRSDAAGTTPGGTGARYFRAGPVAMLMIAAVIVAVDQVTKALAVWGLEGQDPIRIVGDSVRLLLLRNPGAAFSMGTGSTVVLSIVATVVVVGLLWFSRRVHSRWWAWGLGLILGGAAGNLVDRYVRAPGFLEGHVVDFVSVGWWPVFNVADSSLVIGVIVVAVAVVKGVEFDGSRGPVEKGGADG
>CP024869.1|AVZ39176.1|1446902_1447901_-|hypothetical-protein
MNLRTPSASGRPRPVRAGQRLLVAALATALVASSAACADEGDPPGDDAVAAQEDRALEPAVEVDPGPAPTVELLDEGSGELRVMAYSPSRDAVTVAITRSASARTTVPGAEPRLDETPEQTLTVEGLSEPDVDGAQRATVTARDFTSVDELRSAQFATAPGFAVTWTRSADGIVRGLTLEAPATATDAARAGVEITANAVSDATVAWPTEAIGVGARWTVTRSVDDAVAPERSVTYELAALDGDVATVTMELDAPEAAATLDAPAPDGGPGVTLEVEAYEVTGSGELTVDLRAPLPVDGTTESSTRAVYVDPGSGRRTTYVEDSVLRFRTAG
>CP024869.1|AVZ39186.1|1460105_1461035_+|hypothetical-protein
MTGIEELRSRLLTTHDLIARGASAQALSRAVSTGAMIRLRPGFYVDAAARELSRDDRHLLMVLAADRCLVAPVFTHWSAALVLGLPSWGLPLRQVSVSRYGHAQRSRNTRLTRHDVSPVEADEIVTVGGLQVTSPDRTVVDIGRACGRDTSVAVADAAVYGELATAESLHVALDRAAGRSGLKKARVAMTLMDGRSESVAETLSRLTFSDHCLPTPVTQEDIIDTHGNRVARVDFFWREHGVIGECDGFGKYFDGHDLREVRRRLAREKDRDAELVALGYRVIHWRWADLERPWLLAERIRRVLLAAAA
>CP024869.1|AVZ39187.1|1461198_1461564_+|RNA-binding-protein-S4
MAVRVDAWTWSVRLFPSRTKAAAACRGGHVKVNGEAVQPSKAVVPGDRVQVTGTLGRIRVLEVVRTVNKRVGAPVAATCYIDHSPPPPPREVLASQPRRDRGTGRPTKRERRETDRLQGRG
>CP024869.1|AVZ39188.1|1464073_1466218_-|glycogen-debranching-enzyme-GlgX
MTNDDTQQSAPELIRAWPGSAFPLGATYDGTGTNFSLFSEVAERVDLCLIDRDGRETCVELTEVDGHIWHCYLFGVTPGQRYGFRVHGPYEPEHGLRCDPSKLLLDPYGKAFDGEFDGHPSLHSYDLDDPTRRNTENSLGHTMTTVVINPYFDWGNDRAPRHEYHNTVIYEAHVKGMTATHPDIPAEMRGTYAGMTHPAIIDYLTDLGVTAIELMPVHQFMQDQRLIDMGLRNYWGYNSFGFLAPHNEYAFAEKPGDAVSEFKAMVKAFHDANIEVILDVVYNHTAEGNHMGPTIGFRGIDNQAYYRLVEGDEQHYMDYTGTGNTLNVRHPHSLQLIMDSLRYWVLDMHVDGFRFDLASALARGLHDVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGQFRDTVRDFWRGEPATLGEFASRLTGSSDLYENTGRRPTASINFVTAHDGFTLNDLVSYNEKHNDANGEDGNDGESHNRSWNCGVEGPTDDPDVLSLRHRQRRNMLTTLILSQGTPMIAHGDEIARTQGGNNNVYCQDNEIAWMNWELDEEKETLLEFTRTLVRLRKDHPVFRRRRFFGTVLRDDEDPQDIGWFSPDGSEMTHKDWDSGFGKSLAVYLNGEGIHEPDERGQRIVDDSFLLLFNAHHEPIEFSLLGPEYAQSWEVVLDTADHLEERSGELGSDETITVADRGTIVLRKVS
>CP024869.1|AVZ39189.1|1466274_1468434_-|acyltransferase
MATSTPNPPARRRRGKMAYRHDIDGLRGLAIALVVVFHIWMGRVSGGVDVFLTLSGFFFLGSLLRGAGLPGTPLNPLPHLKRLVRRLYPALVVTVAATVVGTILIKPPTQWSAIFEQTIASLFYYQNWELALTSQDYAAADATISPLQHLWSMSVQGQFYLVALAVVLGLTAVWRLVVKRGTPTLMLLGVVLAGTVASVWWSAYGQTVNQPWNYYDTGARMWELLVGGLVAIVLAGVVLPWPLRMLTTAAGLFMVVSTGFFFDGAAYFPGPLAWYPIGGALLIILGGNLPDGERATPRRDPVTWLLSGRVFRRLGDISYSLYLWHWPILILWLSYDRQAEITLVSGLVITAASVVLALLTEKYVERPLRMASRARSRTTPAAQKRDSLRKGSGRSEREQRRFVRATALVVVSAVASLGVVGWWTATSASRSAVPYVDSLTDPDHPGARAFFDGVPVPENVGYVPSLLQVGNDLPMSTLDGCISNFESSEVEMCVYGDVTAPRTIALVGGSHAEHWISGLDEVGRHYGFRVVTLLKMGCPLTLDASVSDSDELLYESCAEWTPAALAALVGLAPDFVFTTATRPVGVVGPDVTPRQYVDLWRALDQQGIGVIAIRDTPWLNQGRGPIRAGDCLGDGGTPEECGMPRERSVAPINPAALAGAGIDSVRLIDLTDGLCDAGNCPVVVGNVIVYHDSHHLSGSWVRSASGELARQMGPATGWW
>CP024869.1|AVZ39190.1|1469250_1469970_-|NUDIX-hydrolase
MPKCNTGHEVLVVVGQVRRIAHPPSHALHVLLWQHTLGPAAGRWALPGGEVGDDEDLATSATRQLAEKVDVRSLSHLESVAEFSDPSRIPGRRVFASGFLGVLPSDADPDIPDDTAWFRVDDLPDTVFDHAEIVARARARLAAKLSYSTLGFALAPEEFTLSTLAQHYAAALGHPVDPTNLQRILTRRGELVRCGRSAPPGPSGGRPAALYRFAERRLRITDQFATLRPPVEVLTGARG
>CP024869.1|AVZ39191.1|1470042_1471128_+|quinolinate-synthase
MSTATGHGTTVAPRPESTVGRLESPLAVRIRHDGAVYTGVEPDARWASEIRRLAAERDAVILAHNYEVPAIQDIAHHVGDSLALSRIAAEAEQSTIVFCGVHFMAETAKILSPDKTVLIPDEAAGCSLADSITAEQLAEWKAEHPDAVVVSYVNTTAAVKALTDICCTSSNAVDVVESIDPDREVLFLPDQFLGAHVRRKTGRDNVLVWAGECHVHAAINGDQLTTKSRAHPGAELFVHPECGCATSALHLATEGAVPADQVKILSTGGMVDAARASGSREVLVATEIGMIHQLRKAAPEIDFLPVNEQASCPYMKMITPAALLRALVEGADEVHVDPATAEAARGSVERMIAIGNPGSGE
>CP024869.1|AVZ41123.1|1471196_1472078_+|nicotinate-nucleotide-diphosphorylase-(carboxylating)
MFDPDTRADALLAIRRALEEDLRYGPDATSLATVPADARATARLVTRSDGVVAGLPLIELVLTEVLGPHSDGSVGGGADFSVTLQARDGDRVSAGDVVAEISAPTRGLLTAERTILNLVCHLSGVATATRAWVDRLEGTGCAVRDTRKTLPGMRLLQKYAVRCGGGVNHRLGLGDAVLVKDNHVVAAGGILPALAAVRERFPDLPCEVEVDSLEQLDQMLASGVDLVLLDNFPVWQTQMAVQRRNAISPRTRLESSGGLGLDVAADYARCGVDFLAVGGLTHSVAVLDVGLDM
>CP024869.1|AVZ39192.1|1472107_1472668_+|hypothetical-protein
MATAGTRVKFVVMTGFWDTSEKSTPAERRQQRMAEARRRVESGENTSPPPPRPAPGPPTRSRSARSSRPATVDPLSVTGAQFAVWRSVQHFCATDSLPDARGTDLDLLVAWSDSIQPFRLRQRIVARLDSQGAWVPVCYAKDGARETITQAQADRYREARLGESTLSGGAQKPLRETDHPESTTSL
>CP024869.1|AVZ39193.1|1472721_1473255_-|hypothetical-protein
MSSTDKSRADEPRAEKIRSAIDDATVPDPGTLHRARMIVVDKLGEWDSLGVDEIVESVCEAYEAPSGEPLRLADMDPSGPATDTPAMRHLRYARAARTALIDLEREGTIVAVAEHPGDSEADTLTGEQTADDAIPGAEEVTATTETTGPAGRESGADELVLSTGPQPRGRRFALAAG
>CP024869.1|AVZ39194.1|1473331_1474225_-|NAD(P)H-hydrate-dehydratase
MTTGQEGEALVLTSHRLRGWALPTPDGGKESRGRVLVVGGGRTTPGGVLLAAEAALRAGAGKLQIATASSVAPGLALQIPESMTVGLPEDEAGELSPDGAETVAELAQGCAAVVLGPGLGNVEVAGALLRRVVPDLDCTLVLDALALAYLTANPDGVAHLEGRCVLTPNTRELARTLDVPESDVEADTPRCVTDLARRTRAVVVSGAATSWIASPEGGLWRDESGTPGLGVSGSGDVKAGVITGLLARGADPAQAAAWATFAHGRAGERLAVRVGPTGFLARELLSEIPHVMAELSS

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Crispr_ID: CP024869_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024869_3

2917241-2917327

Orphan

Consensus_repeat	Method
GCGGCTGCAGTCTTCGCGCGCGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024869_3

>merge|CP024869|3|2917241-2917327|CRISPRCasFinder
GCGGCTGCAGTCTTCGCGCGCGGCTGCGGGGAGGGCGGGGAGGGTGCGGCTGCGGGTGGAGCGCGGCTGCAGTCTTCGCGCGCGGCT

>CP024869|3|2|2917241-2917327|CRISPRCasFinder
GCGGCTGCAGTCTTCGCGCGCGGCT	GCGGGGAGGGCGGGGAGGGTGCGGCTGCGGGTGGAGC
GCGGCTGCAGTCTTCGCGCGCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP024869.1\|AVZ40318.1\|2912583_2915301_+\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|236599
CP024869.1\|AVZ40317.1\|2911052_2911685_+\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ40312.1\|2903913_2905290_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377804
CP024869.1\|AVZ40327.1\|2925357_2926995_+\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ40325.1\|2924060_2924696_+\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ40322.1\|2919517_2921173_-\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|341275
CP024869.1\|AVZ40314.1\|2906828_2907854_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
CP024869.1\|AVZ40328.1\|2927629_2928382_+\|branched-chain-amino-acid-permease	unknown	unknown	gnl\|CDD\|224215
CP024869.1\|AVZ40329.1\|2928374_2928692_+\|branched-chain-amino-acid-transporter	unknown	unknown	unknown
CP024869.1\|AVZ41281.1\|2916540_2916990_-\|sodium:proton-antiporter	unknown	unknown	unknown
CP024869.1\|AVZ40321.1\|2917895_2919521_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271369
CP024869.1\|AVZ40319.1\|2915542_2916055_-\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ40326.1\|2924743_2925361_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|131283
CP024869.1\|AVZ40324.1\|2922081_2923797_+\|diguanylate-phosphodiesterase	unknown	unknown	gnl\|CDD\|226355
CP024869.1\|AVZ41282.1\|2917381_2917801_-\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ40313.1\|2905307_2906744_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|225407
CP024869.1\|AVZ40320.1\|2916095_2916443_-\|hypothetical-protein	unknown	unknown	unknown
CP024869.1\|AVZ40316.1\|2909397_2910483_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197715
CP024869.1\|AVZ40323.1\|2921288_2922068_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181069
CP024869.1\|AVZ40315.1\|2907912_2909349_-\|amidase	unknown	unknown	gnl\|CDD\|181154

Protein	Function_ID	Function_description	E-value
CP024869.1\|AVZ40318.1\|2912583_2915301_+\|ATP-dependent-DNA-ligase	gnl\|CDD\|236599	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed.	0
CP024869.1\|AVZ40312.1\|2903913_2905290_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	2.78797e-155
CP024869.1\|AVZ40322.1\|2919517_2921173_-\|acyl-CoA-synthetase	gnl\|CDD\|341275	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0
CP024869.1\|AVZ40324.1\|2922081_2923797_+\|diguanylate-phosphodiesterase	gnl\|CDD\|226355	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms].	1.55959e-14
CP024869.1\|AVZ40328.1\|2927629_2928382_+\|branched-chain-amino-acid-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	1.39403e-23
CP024869.1\|AVZ40321.1\|2917895_2919521_-\|sodium:solute-symporter	gnl\|CDD\|271369	cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain. Escherichia coli PutP catalyzes the Na+-coupled uptake of proline with a stoichiometry of 1:1. The putP gene is part of the put operon; this operon in addition encodes a proline dehydrogenase, allowing the use of proline as a source of nitrogen and/or carbon. This subfamily also includes the Bacillus subtilis Na+/proline cotransporter (OpuE) which has an osmoprotective instead of catabolic role. Expression of the opuE gene is under osmotic control and different sigma factors contribute to its regulation; it is also a putative CcpA-activated gene. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.1852e-77
CP024869.1\|AVZ40326.1\|2924743_2925361_+\|signal-peptidase-I	gnl\|CDD\|131283	TIGR02228, Signal_peptidase_I_W, signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.	4.83683e-15
CP024869.1\|AVZ40313.1\|2905307_2906744_-\|citrate-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	6.97323e-144
CP024869.1\|AVZ40314.1\|2906828_2907854_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.6173e-52
CP024869.1\|AVZ40316.1\|2909397_2910483_+\|hypothetical-protein	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.85885e-17
CP024869.1\|AVZ40323.1\|2921288_2922068_+\|enoyl-CoA-hydratase	gnl\|CDD\|181069	PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.	1.46582e-71
CP024869.1\|AVZ40315.1\|2907912_2909349_-\|amidase	gnl\|CDD\|181154	PRK07869, PRK07869, amidase; Provisional.	2.50821e-115

>CP024869.1|AVZ41281.1|2916540_2916990_-|sodium:proton-antiporter
MDRNWIELLQELRIVQTGGQVLTGFLLVVPFQDRFADIGASGRALYLVVLTLALASTVVLLAPVMIHRAVFRSHRKDRVLQLSATLARVGLAMLSIALVGLAALVFSLVVGPVAGLVAAAVMAVLVTAMLFVLPARVRHRAATTPYYAG
>CP024869.1|AVZ40320.1|2916095_2916443_-|hypothetical-protein
MSAMGMYSGSVDRHQNAAAEQARTRLDAALREWSGQRAALTADGLGRNPLRRVPRGWPEATATRVEVAARESCVMDEQGAQTEASRLLWSAVAKLVGAAVSLAIPLGIVLALVAG
>CP024869.1|AVZ40319.1|2915542_2916055_-|hypothetical-protein
MVRLIVPVVIGLLFLAVIAGWFWYTTWLVRSAIDELAHRRRLLAGVDPLQVTATKAAASVEAAHDAAHRALSLTVESWYDLRESRAVGTSLVERFPKIEERAARDPEFLDVLEDADALLNDARPGADEIDELLGRTARMDELTLRLRTLVHQYDSAGRRGFGRFFPQGRQ
>CP024869.1|AVZ40318.1|2912583_2915301_+|ATP-dependent-DNA-ligase
MASKGGKESVEVDGRTIRFTHPDKVLYEATGTTKADVLEYYLAVAPLLMTYAGQRPVTRKRWPDGTEDKSFFEKNLPSHTPDWVSRVAIEHSSRTVTYPVLDSPATLAWFAQQAALELHVPQWTLTDGEPGRTRRIVIDLDPGQDVDLDTTAKVALRVRDLLTEAGLASYAVTSGSKGIHLYARLDKAVTAKGASAVAKQIAQSLAKQTPDLVTATMKRSIRDGKVFVDWSQNSGAKTTVAPYSLRGRAEPWVAAPRSWEELGDGGLTHLHWDEMLKRLESEGDLLEGLEGPAKKGGGSKKNATKKSATKKSSASREKKSASSKKSSSSSSDDGDPERGSSDSSGADSGDSDSGSDDSGSDDSTRAAAEEGCDTGPTDADAVVTSLEEYRRKRDRRKTPEPFDGEVETDRSDDDGPIFVIQEHHARRLHYDLRLEHHGVLASWAVPKNLPTEPKDRRLAVNTEDHPLGYETFEGTIPKGEYGAGHMTIWDRGTYECEKWKPDEIIVWLHGEKVSGRYVLIRTNAEKNQWIVQYMKDQSPDSFYGGRDNPKSSYPSDNDRSGGSDTSRSRESGDSTTRRSEAGQNRDSDMADRPDSPPLPMIPTSGSVTSLPEDTWAFEGKWDGYRVTVATDGRQSRVMSRNGNSMDWLADGFPGLAQAIGKPAVLDGELVVPGPDGVPEFSALAKQAAAEGDDSSIGPVHLFVFDVLGLDGVDLRRERWERRREVLDLLTPALEEVERVHVPGVLDGPGDRALDEAEEFGWEGIVAKRRDSHYQSGRRAKTWLKEKLLTTTEAVVGGWRPGKGGRSGSLGSLLLGLPAHTGLTYIGRVGTGFSDRQGKALLEELEPLRRKTSPFLEDLPSDARRDAIWVLPKLVVEVRHQGFTEEGVLRQSSWRDIRRDKLPGDL
>CP024869.1|AVZ40317.1|2911052_2911685_+|hypothetical-protein
MSPRWSALAAVLAAYGPRWAESAYANESTWHYDDGGGNWADIRFAGEGRAVLLGHDHEYSTTYFRAAAEYFGEPETDLLAGCPAWWAEAIGDYLERIDSEGMWIGFIYGYDGGTWTRADYDADDGFTALNLPALDDRAVLKQITEQLSMSIGGRPAGAAPAPALLDRMLAECPDLSADTAQALLGGRGLDVDAALRAAHQFRRGPQEHAT
>CP024869.1|AVZ40316.1|2909397_2910483_+|hypothetical-protein
MVAPCAPGHIGRMADAPFRPGLRRSEVCVTPEMTWWVRLADSVRAAGRGEAPLDEPVRMVRDGLGFDCATLVGPQRATTGQAHPVLVNLDYPGDAIRFISTTYAAECPAHRYITEQRVAGRFIDLPYDFRSSRTYREALKPNGFHEGLTLPLGVLRPGSPRPGFLALSSTHGRPLRDEALLGLTMLASEIASLTDPRATRPPAPADLVVWVGRGTLDVRVGDVAAGPFTARDLSRIGALHQRTGAALGFRHLDDSRGWWHVTTDAAGDGVLIRIQQAECGDHLTPRELDVVGLLSRGWTNDEIATALGISVRTTRTHVEAALMKLGVPNRTALGREALLRDLDSLDAIRCVAEASHRSLPA
>CP024869.1|AVZ40315.1|2907912_2909349_-|amidase
MNVEEYSAQDATSLAAMVAAGEVTADELATLATDGIAAVNAHINAVASGPFDTPLDHASEGTFAGVPFVIKDLVCHAEGVPTRMGTRMLADGVVPPADTHLMERFRAAGLATVAVSTTPEFGYNANTEALVYGSTRNPWDTSRSAGGSSGGSGALVAAGAIPMAHANDGGGSIRIPAAVNGLVGLKPSRGRVPLGPDLDSTALSGKAIEFAVTRTVRDAAALLDEVAVSYPGDRFIIAPPERPWAREVGADPGRLRIALHTDSWAGTAVDPEVVAAVEQVARTLEGAGHHVERATPAFEWEEFLQATAKAWAAFLAESVMGVEAMSGTTAGPDNLEATTWACVQFGRGLTVLDMAAATATFTAVSREVGRFFGDHDILLTPTTNHPAMPLGYLDANADLDDLGWTRRIFDAFSFTPLFNTTGTPSISLPLGQSRDGLPIGVQLAGPMCSESMLLRVAAQLEAAMPWSARRPGVHVTTV
>CP024869.1|AVZ40314.1|2906828_2907854_+|LysR-family-transcriptional-regulator
MSMNLGVHHLRAIVAVAHHRSFTLAAAELGVAQSSLSRTVLEAERRLRTPLFQRSTRRVLLTSDGEAVVTVAQGVIEHVDTGLAHIEGYLAGTRGSITIATLPSLAATLLPPMIRVYQRLHPDVAVHVEDNLSDQVTEHLRSGRADLALTTHPGDGRSGGDSGGGAGDDSAGGSGGGSEYVARPIATDSFFLAVHPDHRLAGAETVEWSDLQSEPLIAFGPASSVHKAVSAALDDAAVSPATIVRAQNVAAVAGLAASGLGVAPVPGFVLPLMRFAGLTFVPLVPERSRTITLVRHRDRPLSPAVSAWMDVVDRHLGSGPEGLPGVRWVRPGAGPGGGVAG
>CP024869.1|AVZ40313.1|2905307_2906744_-|citrate-transporter
MLAWAGFLTIGVILALLLSNRVAAVVALAGVPIVFALIAGFGPAEIGEFVADGLGGVVGVTVMFVFAITYFGVMRDAGLFDPLIRCIVRWAGNAPVTICVATTALAMAAHLDGAGATTFLITIPAMIPLFDRLGMSRLTLSVCVGLGAGTMNLLPWGGPTARAAATAGVPANDLWVPLIPAQLAGMVVALAIAWFLGAREARRIGALQFEPATTAPAAATTTTTTTTTTTPAGPPTTGDTPPADEPAPEDQAEPAGVDELTEEERALRRPRLMWFNAALTIAVLAALIVGVAPPELIFLVGVVVALVVNYPGLKSQTARIEAHATGAMLMATTLLAAGSFLGILEGSGMITAMADAATSVIPSSAAPGLPVIIGILGVPLSLLFGPDAFYFGVLPVLNALGEQYGVSSIEMTQAALLGQETVGFPISPLTGSFYLLVGLAGVDIGKHIKALFGWAWLVSIVMVVVALLTGVIAFGATA
>CP024869.1|AVZ40312.1|2903913_2905290_-|ABC-transporter-substrate-binding-protein
MNRGSGRTGRGPGRTIRLGAGAGFAGDRIDPAAELARSAALDYLVFEVLGERTIAAANAQRISGAGHGYDPLLRRRVEATLPDCRRNGTTIITNGGAADPVAAGALAVEIAREHGLTGTRVGVISGDDVLDAVRRIDPVLWETGRPLSAESDEVVSANAYLGAAPVAEALAGGADVVIAGRLADPALYLGAIAHEHGWDLAGDPTLLGQGTVVGHLLECAGQLTGGYFADPVTKPVPGLDRLGFPFADVAADGQAVLSKLPGSGGLIDTRTVTEQLLYEVGDPSAYVTPDVVADFSGVTLDQVGPDRVQVTGGDGTARPDELKVTLGFRGGWLGEGQISYAGPRALDRAELAADIVRRRLVDVHGLDEQTVLVELIGAGAAFRGLAEAGDPVEVRLRVAARVPDRAAAEAVGWEVESLYTNGPAAGGGARKHVQEVLAIRSCTLPRALVHTHVSIEEA
>CP024869.1|AVZ41282.1|2917381_2917801_-|hypothetical-protein
MLDPGDAPEPDHKRAGMLIHAFVAVAAFALLGMVTDTWQMVFIAVPIFAVIMMLLGSLQSDGSWERVSTLAIVAYCSGLGVLVLWSILTAGGEAMLWGLPMSMGVIFYLLWPYTAVGAGLLYALVFDRTIDEKRLAAAV
>CP024869.1|AVZ40321.1|2917895_2919521_-|sodium:solute-symporter
MNNPVVIGVVLAYFVLMFAIGAWANTKMKSAKEFLVAGQSLGFFVMAIASFSSIQSGWGMVGGTGQTYAWGLQALIAVGLLAPFGFAVAWFLLGSRLNWIGKKHRVYSVPDLIRVRFQDRTSHATMSVAIFIASIAYMTAQVTSIGVIISLLLGTSIPTSVWIGSMVVAAYTMAGGMLAAVWTDLVQGVLMVVMSVGLFFFAVQVAGGWHPMLDTISAGSAEMLSIDGVQAPTYIFAFGLLIFVGAVGQPQLLTKFLMLRDMTQLKWGAAVAGIAYAITTLFSVGIGLATRSMTLTGDAPELENIDDTAIWFLDSVTNPIVGGIALTGLLAAIMSSASSFITIGASSMMRDLPGAFGIKVVRELLWSRIASLTLVVLSVLLTLFLSQVVFLLGALGWAAFAAAIVGPVVMSIYWHRATATAATVTVAFAILGNMIITSLAARDIISVPAFMQVGGISLLVSIVLFYVVSLMTTNRHPDATLEFLYGGRSSVTDPRLSGGAAPTADTTTAASSQAGSTAASRRATSTAVSSRAASTERNDHV
>CP024869.1|AVZ40322.1|2919517_2921173_-|acyl-CoA-synthetase
MPSTVQARPWRPPLGPEGFQWEIPDRFNIGAACTDAHARQSPAIVVDRGDDPPEVTTFGELGDRARRLITFLRDRGVGEGDRVAVMCAQSAETAVAHVAAYLMGAIAVPLSVKFGPEAALFRMGDSGAVAAVFDADCYARLAGELAELPELATVLVAGEMGPAAEAGALTALPLSVTDSADLAVVVADTGPDDPALLIYTSGTTGQPKGALHGHRVVLGHMPGVVRALDGFPEQGDVFWTPADWAWAGGLLDVLLPSLYSGVPVVASARRPSPETVEHILRRHGVTCSFLPPTILKMMRASEVDYSTTGLRAVFSGGEALGEAVAEWAREALGVQVNEIYGQTECNLIVGTCHSEFATPPGSMGRPTPGFDLVLIDEAGQPVAAGEVGEICVRLPSPNAFLRYWNAPDKTAEKTAGGVLHTGDLARVDERGSFWFSGRNDDLISSSGYRVGPGEIEDQILRHSGVEMVAVIGVPDELRGEAIVAYVVPAEGTSGTDELAREIQALVKERLAFYQYPREVRFLDELPTTNTGKIRRAALRNDHNRPTPEDPS
>CP024869.1|AVZ40323.1|2921288_2922068_+|enoyl-CoA-hydratase
MYEFLSLDVVDGLATVTLSRPPVNALSRGMQEELRAVAQEVSGRTDVDAVVFTGSDRVFAAGADIKEMRQMPYAQMLTEARELQSAFTAVAEIPQPTVAAITGAALGGGMELALCCDRRIAAERATLGQPEILLGIIPGAGGTQRLARLVGPAVAKELCLTGRTLTAAEALELRAVDEVVPDGQATARATEWARQFVGGPRMALRAVKEAVDRGIEVDLATGLSIERALFAALFATEDREVGMQSFIDSGPGKADFLGR
>CP024869.1|AVZ40324.1|2922081_2923797_+|diguanylate-phosphodiesterase
MAVDLALGLRDVLDAAAELAAAQDEDAVLHIAIRRARQLVGTDLAYVMLLDPERGDTYMRMAEGATSPRFDTIRLGMGLGLGGQVAEAMAPRWTRNYLADEQYTHVIDPIIREEGVKAILGVPVRTHGRLTGTLFTSDRGERDFTQDEITLVALLADQVSAALSAAERASRRRRELDETRDALDAERARSARLAATVALHERLTRLVVAGATVPEIVDLLVDIEGGTAAVFDLAHREIGAARSAEGPPAELLRRVLEEAAADTERMVTRQSGGHLVVVNPVVTGSDHLGYVTYASRGSVPAIGRVLERVSSVIALILLGHRARDEADNRVRGELLAELLSPGEHDLEAIGRRAALLGVDVHSDLIALVITPAEPRMTRALQTECRSLARADGGLVTTYGDRAVMLLPGSDAGATARDVATRLSPHSATVGASGPAGELVAVADHVERARRAAQLLVALGRAGEGAATEELGLYGLLFSEVDAEDVTQFIDRNLGPVRDHDRDRGSALMETLSAWFAADASPSATADRLYIHVNTVYQRLDRLDSVLGDGWRRGDRAMELRLALRMWELRGA
>CP024869.1|AVZ40325.1|2924060_2924696_+|hypothetical-protein
MSTTPTPARTAPKQNRRKKARAIMASGLVLGVGAAVTLAAWSDTAWGVSEFGTTGSDFNIQAHFNAAEGWNEFVTKDKAGTMQFGPASKALVPGVPVYQLVGLRENKGNLGANVTISQQSVATNALTSKVAVSIAELGGGSTPPSTCSSAATNFTTVGTLAAPTTRTTRVEKNAYTWLCFRAQLDGSAGLDSAGIAPAPVYWTFDAQSDDA
>CP024869.1|AVZ40326.1|2924743_2925361_+|signal-peptidase-I
MTAMQSATSAPHGSAPVRPVGAHRAPGRSVGSYLAGGLANLLAAGGVVAVGLVLAAVTMNITLIMFKTGSMSPTIPAGSVAVVKQIGADEIRVGDVVTVDRPGRLPVTHRVIEVHPQAPGEALIQMKGDANPNPDPGMYRVESVRKVLWSVPGLANAIVWAGNPLVLGSITLLAAVGVLWTFWPGRDEDDDSDAGADADDDEDAR
>CP024869.1|AVZ40327.1|2925357_2926995_+|hypothetical-protein
MTGLQHPVRALVAMFGALALVMTTALAVGTIRPTEAAWADRAMGAAEFGASPDGGRNFARSAAGYGALKPWLSGASAIGSVQREVTPSTTWIARSASPSSWSTESVGTFLSSVRASAETRTCARRDNRQPDDCRPLPDQPEAGAAASHAVSQVRNVDASALALLVRVPLVRTSSTPITATASCTPGEIGRAGLAGDPVTIGGNLFDSGDRVQIPAPGRQTTFVRDIGLYTYHGVLQHHHVVSNGYAMSQLRLYVEASGDVLGSQPWVLHMVLAHAECGASRPVTSAPVRPDVSWPAPLPEQSARMMSMRAAAVSESVATEGEPGRPVEAEPGQTVEAEPGRSPATDDVELPAPVVVEPLPGQATEADAIAGPEPTGPASSPTVEPGPRRPVSVTPGRWFTLVNRDGVELGSARIDGMVRTPGCGVELTLSIATSPESGPDRWSSLGPADVAELRSGGATRDARAVSSDCEGSAASTTTRLSPDREYEIVLAVQLDDSAKRAMLRPEGTAGWAFDLPPLTEVAVVATTATTTTSTTSAMPSAESEG
>CP024869.1|AVZ40328.1|2927629_2928382_+|branched-chain-amino-acid-permease
MISLTGVPPAFTILSMRPLWRTPSPSASTASTAVTRPVSTAAAIATAIAVVGMAYGSAASAAGLPPWLVVLAAALVLSASSELVFVGVVASGGLLWIAVGAGLLVSLRNAVYGLSASAFLPDQRAPRLLWTHLVNDESVAVATAPQHPSRRFAAFRTVGIALLVAWPLGAAIGVGVGYVLPDPGQLGLDAAFPAVFVAIILAAVTRRTAAPAVAGATLATAAAPFVAAGLAPVLGLFGLLTAVRRRGDHA
>CP024869.1|AVZ40329.1|2928374_2928692_+|branched-chain-amino-acid-transporter
MPDPALILAVAALAVGVYAIRLAGVHVGRTRASLQLHRWCDPAVIVLLAGVAATATLYDGQAFAGWARIGGVASAAVLAALRAPLVVVVVAAVGVTAALRALGVH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	125533-125566	8	0.765
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1093558-1093591	8	0.765
CP024869_1	1.5\|729973\|34\|CP024869\|CRT	729973-730006	34	NZ_CP014684	Kozakia baliensis strain NBRC 16680 plasmid pKB16680_3, complete sequence	4423-4456	8	0.765
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	707219-707252	9	0.735
CP024869_1	1.3\|729838\|34\|CP024869\|CRT	729838-729871	34	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	125533-125566	9	0.735
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1514102-1514135	10	0.706
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1135823-1135856	10	0.706
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1537471-1537504	10	0.706
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	379506-379539	10	0.706
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1442318-1442351	10	0.706
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	6499-6532	10	0.706
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1752886-1752919	10	0.706
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	MF415411	Klebsiella phage KPN U2874, complete genome	261-294	11	0.676
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	MF476924	Klebsiella phage YMC15/11/N53_KPN_BP, complete genome	261-294	11	0.676
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	MF415413	Klebsiella phage KPN N54, complete genome	261-294	11	0.676
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	MF415410	Klebsiella phage KPN N137, complete genome	261-294	11	0.676
CP024869_1	1.2\|729766\|34\|CP024869\|CRT	729766-729799	34	MG835858	Klebsiella phage KPN N98, complete genome	261-294	11	0.676

1. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 8, identity: 0.765

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ggtggacagcggcggcatcccggcccgcgccatc	Protospacer
************** *********  .  * *.*

2. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.765

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ggtggacagcgccgccaacccggcaccacgcatc	Protospacer
*********** ***** ******.  **  *.*

3. spacer 1.5|729973|34|CP024869|CRT matches to NZ_CP014684 (Kozakia baliensis strain NBRC 16680 plasmid pKB16680_3, complete sequence) position: , mismatch: 8, identity: 0.765

ggtggacagcggtgccatgccgagcgagccgatg	CRISPR spacer
catggacagcgttgccatgccgaacgacaggctg	Protospacer
 .********* ***********.***   * **

4. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 9, identity: 0.735

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
gatcaattgcggcgcgatcccggcgggaccgagt	Protospacer
*.* .*. ******* **********.***** .

5. spacer 1.3|729838|34|CP024869|CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 9, identity: 0.735

ggtggacagtggcgccatcccggcggaaccgacc	CRISPR spacer
ggtggacagcggcggcatcccggcccgcgccatc	Protospacer
*********.**** *********  .  * *.*

6. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

7. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

8. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

9. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

10. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

11. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

12. spacer 1.2|729766|34|CP024869|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
tccggacagcggcgccgtcctggcggagcggcag	Protospacer
  .*************.***.******.* *

13. spacer 1.2|729766|34|CP024869|CRT matches to MF415411 (Klebsiella phage KPN U2874, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

14. spacer 1.2|729766|34|CP024869|CRT matches to MF476924 (Klebsiella phage YMC15/11/N53_KPN_BP, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

15. spacer 1.2|729766|34|CP024869|CRT matches to MF415413 (Klebsiella phage KPN N54, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

16. spacer 1.2|729766|34|CP024869|CRT matches to MF415410 (Klebsiella phage KPN N137, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

17. spacer 1.2|729766|34|CP024869|CRT matches to MG835858 (Klebsiella phage KPN N98, complete genome) position: , mismatch: 11, identity: 0.676

ggtggacagcggcgccatcccggcggaaccgacc	CRISPR spacer
ccgccccatcggcgccatccccgcggaaccaata	Protospacer
      ** ************ ********.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2308527 : 2362100

Staphylococcus_phage(20.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVZ41220.1\|2308527_2309742_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.2e-39	34.6
AVZ39839.1\|2310246_2311110_-	hypothetical protein	NA	NA	NA	NA
AVZ39840.1\|2312160_2312988_-	hypothetical protein	NA	NA	NA	NA
AVZ39841.1\|2312984_2313725_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.6e-13	25.4
AVZ39842.1\|2313702_2314098_-	GntR family transcriptional regulator	K4IBS0	Streptomyces_virus	1.5e-05	42.9
AVZ39843.1\|2314313_2314475_+	hypothetical protein	NA	NA	NA	NA
AVZ39844.1\|2314523_2315060_-	hypothetical protein	NA	NA	NA	NA
AVZ39845.1\|2315182_2316541_+	oxidoreductase	A0A2K9L022	Tupanvirus	6.4e-08	22.1
AVZ41221.1\|2316641_2317613_+	AraC family transcriptional regulator	NA	NA	NA	NA
AVZ39846.1\|2317710_2318898_+	hypothetical protein	NA	NA	NA	NA
AVZ39847.1\|2318894_2319803_+	short-chain dehydrogenase	NA	NA	NA	NA
AVZ39848.1\|2320194_2321403_-	sterol desaturase family protein	NA	NA	NA	NA
AVZ39849.1\|2321541_2323827_+	AAA family ATPase	NA	NA	NA	NA
AVZ39850.1\|2323840_2325394_-	MFS transporter	NA	NA	NA	NA
AVZ39851.1\|2326607_2327642_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVZ41222.1\|2327698_2328700_+	iron ABC transporter permease	NA	NA	NA	NA
AVZ41223.1\|2328795_2329839_+	ABC transporter permease	NA	NA	NA	NA
AVZ39852.1\|2329835_2330735_+	cobalamin/Fe(3+)-siderophore ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-12	27.2
AVZ41224.1\|2330923_2332912_-	hypothetical protein	NA	NA	NA	NA
AVZ41225.1\|2333025_2334273_-	carboxylate--amine ligase	NA	NA	NA	NA
AVZ39853.1\|2334435_2335794_-	hypothetical protein	NA	NA	NA	NA
AVZ41226.1\|2335816_2337136_-	cytochrome P450	V5UQK0	Mycobacterium_phage	1.4e-12	25.7
AVZ39854.1\|2337340_2337637_+	hypothetical protein	NA	NA	NA	NA
AVZ39855.1\|2337659_2339018_-	methylase	NA	NA	NA	NA
AVZ39856.1\|2339063_2340524_-	oxidoreductase	NA	NA	NA	NA
AVZ39857.1\|2340636_2341938_-	glycosyl transferase	NA	NA	NA	NA
AVZ39858.1\|2342028_2342670_+	TetR family transcriptional regulator	NA	NA	NA	NA
AVZ39859.1\|2342772_2345766_+	acyl-CoA synthetase	NA	NA	NA	NA
AVZ39860.1\|2346104_2347372_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	8.5e-71	51.6
AVZ39861.1\|2347621_2348299_+	hypothetical protein	NA	NA	NA	NA
AVZ39862.1\|2348295_2348751_+\|transposase	transposase	NA	NA	NA	NA
AVZ41227.1\|2348792_2349803_+\|transposase	IS3 family transposase	NA	NA	NA	NA
AVZ39863.1\|2352290_2356223_+	helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	2.0e-25	21.2
AVZ39864.1\|2356626_2357397_-	AAA family ATPase	NA	NA	NA	NA
AVZ39865.1\|2357393_2358983_-\|transposase	transposase	K4I413	Acidithiobacillus_phage	3.3e-56	33.2
AVZ39866.1\|2359807_2360353_+	hypothetical protein	NA	NA	NA	NA
AVZ41228.1\|2360462_2362100_+\|transposase	transposase	K4I413	Acidithiobacillus_phage	1.4e-62	33.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024869

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection