CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028514	Carboxydocella thermautotrophica strain 41 chromosome, complete genome	1 crisprs	cas4,cas8b2,cas7,cas5,cas3,cas1,cas2,cas14k,cas3HD,RT,DEDDh,csa3,DinG,cas14i	0	0	5	0
CP028515	Carboxydocella thermautotrophica strain 41 plasmid pCCELLA01, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028514_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028514_1

66410-69639

Unclear

Consensus_repeat	Method
GTCTTAATAGAACCATTGTGGGATGGAAAC	PILER-CR
GTCTTAATAGAACCATTGTGGGATGGAAAC	CRISPRCasFinder
GTCTTAATAGAACCATTGTGGGATGGAAAC	CRT

48 spacers

cas2,cas1,cas3,cas5,cas7,cas8b2,cas4,cas6

The CRISPR arrays of CP028514_1

>merge|CP028514|1|66410-69639|PILER-CR,CRISPRCasFinder,CRT
GTCTTAATAGAACCATTGTGGGATGGAAACTGATAACGAAGGCATCAGCCCTAATCTGGCCTACTGGGTCTTAATAGAACCATTGTGGGATGGAAACGGAGAGGTCTTGGGGGAATGCCTTCCTCAGCGCCAGAGTCTTAATAGAACCATTGTGGGATGGAAACCTAGGCCGGTGACGGTGTAAGGCTTCCCCTTTTCGTCAGTCTTAATAGAACCATTGTGGGATGGAAACGCACTGCAAGCAGTAATAAAAAAGCGAAAAGGTAAGGTCTTAATAGAACCATTGTGGGATGGAAACCACCTCTCCAAAGCCTGCATTATGCGTGGTACAGCATGTCTTAATAGAACCATTGTGGGATGGAAACCTTGTCAGGTATGCTGTTATTTTCAAGGGTTGCATTAGTCTTAATAGAACCATTGTGGGATGGAAACGGCTCATGCGCCGCAGACTGGAAGATGGCGGGGGACTGTCTTAATAGAACCATTGTGGGATGGAAACGCCGGCATGGCTATGCAGGACTTAGCCAAGTACCAGGTCTTAATAGAACCATTGTGGGATGGAAACAATAGTGTGATAATAGAAAACGTCTGCTGGGGGCTGGGTCTTAATAGAACCATTGTGGGATGGAAACCTCCGGCAGCGCGGGATGCGCTGTCAGGGGCGGCTATTTGTCTTAATAGAACCATTGTGGGATGGAAACACTGGTGTGGTAAAGACGGCAAATGGCAAGACGTCTGTCTTAATAGAACCATTGTGGGATGGAAACCAAGCTTGTCCATGCCAAACTTGCGGATCCGATCAGGTCTTAATAGAACCATTGTGGGATGGAAACTGATGGTGGCAAGAAAGGAGGAGTAAATCATGATTTGTCTTAATAGAACCATTGTGGGATGGAAACGTTCTGATGCCAGTATGGTGGCCGATAGCCATACCAGTCTTAATAGAACCATTGTGGGATGGAAACCAAGTTAGCTCCCTGCAGGTCAGCACCCCTCAGGTCAGTCTTAATAGAACCATTGTGGGATGGAAACCCGGGTGCTGGAGGCAACATGAGAGAACGGCGCTTTGTCTTAATAGAACCATTGTGGGATGGAAACATATCGGGCCGGGAAAAGCAAGGAAGAGGCTATGGCCGTCTTAATAGAACCATTGTGGGATGGAAACATATAATTTCAGCGAGGAGGTGGCAAAAGCCTGTGCTGTCTTAATAGAACCATTGTGGGATGGAAACCGCCCGGTGATTATCAACCTGCTGTTTGGTCATATAGGTCTTAATAGAACCATTGTGGGATGGAAACCCAGTAGGAGAGAGCCGGTGTAGCACAGCACCGGTGGTCTTAATAGAACCATTGTGGGATGGAAACGGCTCCTGCTCTGGTCAAGCACCTGGGCTATGACTGTCTTAATAGAACCATTGTGGGATGGAAACTCGCAGCAGGAAGCAAAATCTACTGGGATGCTGTAAAGTCTTAATAGAACCATTGTGGGATGGAAACTTAGGTGTATATCTCAGTTCCGGGTCGGCTGTCAGCCGTCTTAATAGAACCATTGTGGGATGGAAACCAATAGAAGAGATTAAGCCCGCACATCTCGCAGTGGGTCTTAATAGAACCATTGTGGGATGGAAACAGTCAGCAAGGGTAGGCCTCGTTCTGGGAGCATTTTCAAGTCTTAATAGAACCATTGTGGGATGGAAACCAACTGCGGAACTATGGCATATTGGCGACGGAGCAAGGTCTTAATAGAACCATTGTGGGATGGAAACGTTCATAATCCAGGACTTCAGTCAATGTCAGCAAATTGTCTTAATAGAACCATTGTGGGATGGAAACACAACAAGCCATTTGTTACTATCAGTCTTATCCAAATAGTCTTAATAGAACCATTGTGGGATGGAAACAGTGCAGAGCCAGCTCAACGACCTGCGCCGCCAGGAGTCTTAATAGAACCATTGTGGGATGGAAACAGGTATAATTTGCATAAAAACTGTATAAACTTAGTATGTCTTAATAGAACCATTGTGGGATGGAAACGAAGCGGGGCCGGCAATTGAGGCGGGAGTTTGCAAAGTCTTAATAGAACCATTGTGGGATGGAAACTTCTAGTCTGGATTTTATGTGTTCAGGCAATCTAAGTCTTAATAGAACCATTGTGGGATGGAAACCTTGGATGGCTAGCTCTATAACGTCTGGCTCAACATGGTCTTAATAGAACCATTGTGGGATGGAAACATGCAATATCTAACCCATCTCGTAAGAGAAGTATTGGTCTTAATAGAACCATTGTGGGATGGAAACGCGGCAGTGCCGGAACAGCCCTATATACGTGGCCAGTCTTAATAGAACCATTGTGGGATGGAAACATGAAGCATACAGGGTCGCTGCACTCAGCGATAATCGTCTTAATAGAACCATTGTGGGATGGAAACCCAAAGATTCATTCTTGATATTGGAGGTGAAACCGAGTCTTAATAGAACCATTGTGGGATGGAAACATGCCAACGCTTATCATGCCTCCTCGATGCCCCTCTAGTCTTAATAGAACCATTGTGGGATGGAAACGGCGCATCCGGGAACTGAACCGAACTTGGCGCAGGAGTCTTAATAGAACCATTGTGGGATGGAAACGCTGTTGCTTACAGACAAGTTACAAGTGAGCAACCAGAGTCTTAATAGAACCATTGTGGGATGGAAACTTGGCGCCAGGATGGAGCATCAGCACTTCGCAAGTATCGTCTTAATAGAACCATTGTGGGATGGAAACGAATTAATTCCGTGTCGGTGAAAACAACCCCATCTGCGTGTCTTAATAGAACCATTGTGGGATGGAAACAAATACTCAAGGTAGGCATAATCAATGTTTGTGCCCGTCTTAATAGAACCATTGTGGGATGGAAACCAGCATGGGTAAGTGATTCGGTGATATTGGCCGCCGGTCTTAATAGAACCATTGTGGGATGGAAACTTGGGACTGTTGGTAATTTTGCCTACCAGAGGCTCCCGTCTTAATAGAACCATTGTGGGATGGAAACCGGCTTCCTTGCGCAGCTTTTCCCGCTCGTCGCTCAGTCTTAATAGAACCATTGTGGGATGGAAACGGTGGAAAACTTGCTCTGGCGAGAAATAGCAGCTGCGTCTTAATAGAACCATTGTGGGATGGAAACCTCTATCTCATCATTCAGCTTGGCCAATTCCAGCCGGTCTTAATAGAACCATTGTGGGATGGAAAC

>CP028514|1|1|66410-69639|PILER-CR
GTCTTAATAGAACCATTGTGGGATGGAAAC	TGATAACGAAGGCATCAGCCCTAATCTGGCCTACTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGAGAGGTCTTGGGGGAATGCCTTCCTCAGCGCCAGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTAGGCCGGTGACGGTGTAAGGCTTCCCCTTTTCGTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCACTGCAAGCAGTAATAAAAAAGCGAAAAGGTAAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CACCTCTCCAAAGCCTGCATTATGCGTGGTACAGCAT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTTGTCAGGTATGCTGTTATTTTCAAGGGTTGCATTA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCTCATGCGCCGCAGACTGGAAGATGGCGGGGGACT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCCGGCATGGCTATGCAGGACTTAGCCAAGTACCAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	AATAGTGTGATAATAGAAAACGTCTGCTGGGGGCTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTCCGGCAGCGCGGGATGCGCTGTCAGGGGCGGCTATTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ACTGGTGTGGTAAAGACGGCAAATGGCAAGACGTCT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAAGCTTGTCCATGCCAAACTTGCGGATCCGATCAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	TGATGGTGGCAAGAAAGGAGGAGTAAATCATGATTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GTTCTGATGCCAGTATGGTGGCCGATAGCCATACCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAAGTTAGCTCCCTGCAGGTCAGCACCCCTCAGGTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCGGGTGCTGGAGGCAACATGAGAGAACGGCGCTTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATATCGGGCCGGGAAAAGCAAGGAAGAGGCTATGGCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATATAATTTCAGCGAGGAGGTGGCAAAAGCCTGTGCT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CGCCCGGTGATTATCAACCTGCTGTTTGGTCATATAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCAGTAGGAGAGAGCCGGTGTAGCACAGCACCGGTG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCTCCTGCTCTGGTCAAGCACCTGGGCTATGACT
GTCTTAATAGAACCATTGTGGGATGGAAAC	TCGCAGCAGGAAGCAAAATCTACTGGGATGCTGTAAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTAGGTGTATATCTCAGTTCCGGGTCGGCTGTCAGCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAATAGAAGAGATTAAGCCCGCACATCTCGCAGTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGTCAGCAAGGGTAGGCCTCGTTCTGGGAGCATTTTCAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAACTGCGGAACTATGGCATATTGGCGACGGAGCAAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GTTCATAATCCAGGACTTCAGTCAATGTCAGCAAATT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ACAACAAGCCATTTGTTACTATCAGTCTTATCCAAATA
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGTGCAGAGCCAGCTCAACGACCTGCGCCGCCAGGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGGTATAATTTGCATAAAAACTGTATAAACTTAGTAT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GAAGCGGGGCCGGCAATTGAGGCGGGAGTTTGCAAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTCTAGTCTGGATTTTATGTGTTCAGGCAATCTAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTTGGATGGCTAGCTCTATAACGTCTGGCTCAACATG
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGCAATATCTAACCCATCTCGTAAGAGAAGTATTG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCGGCAGTGCCGGAACAGCCCTATATACGTGGCCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGAAGCATACAGGGTCGCTGCACTCAGCGATAATC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCAAAGATTCATTCTTGATATTGGAGGTGAAACCGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGCCAACGCTTATCATGCCTCCTCGATGCCCCTCTA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCGCATCCGGGAACTGAACCGAACTTGGCGCAGGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCTGTTGCTTACAGACAAGTTACAAGTGAGCAACCAGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTGGCGCCAGGATGGAGCATCAGCACTTCGCAAGTATC
GTCTTAATAGAACCATTGTGGGATGGAAAC	GAATTAATTCCGTGTCGGTGAAAACAACCCCATCTGCGT
GTCTTAATAGAACCATTGTGGGATGGAAAC	AAATACTCAAGGTAGGCATAATCAATGTTTGTGCCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAGCATGGGTAAGTGATTCGGTGATATTGGCCGCCG
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTGGGACTGTTGGTAATTTTGCCTACCAGAGGCTCCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CGGCTTCCTTGCGCAGCTTTTCCCGCTCGTCGCTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGTGGAAAACTTGCTCTGGCGAGAAATAGCAGCTGC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTCTATCTCATCATTCAGCTTGGCCAATTCCAGCCG
GTCTTAATAGAACCATTGTGGGATGGAAAC

>CP028514|1|1|66410-69639|CRISPRCasFinder
GTCTTAATAGAACCATTGTGGGATGGAAAC	TGATAACGAAGGCATCAGCCCTAATCTGGCCTACTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGAGAGGTCTTGGGGGAATGCCTTCCTCAGCGCCAGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTAGGCCGGTGACGGTGTAAGGCTTCCCCTTTTCGTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCACTGCAAGCAGTAATAAAAAAGCGAAAAGGTAAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CACCTCTCCAAAGCCTGCATTATGCGTGGTACAGCAT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTTGTCAGGTATGCTGTTATTTTCAAGGGTTGCATTA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCTCATGCGCCGCAGACTGGAAGATGGCGGGGGACT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCCGGCATGGCTATGCAGGACTTAGCCAAGTACCAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	AATAGTGTGATAATAGAAAACGTCTGCTGGGGGCTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTCCGGCAGCGCGGGATGCGCTGTCAGGGGCGGCTATTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ACTGGTGTGGTAAAGACGGCAAATGGCAAGACGTCT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAAGCTTGTCCATGCCAAACTTGCGGATCCGATCAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	TGATGGTGGCAAGAAAGGAGGAGTAAATCATGATTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GTTCTGATGCCAGTATGGTGGCCGATAGCCATACCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAAGTTAGCTCCCTGCAGGTCAGCACCCCTCAGGTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCGGGTGCTGGAGGCAACATGAGAGAACGGCGCTTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATATCGGGCCGGGAAAAGCAAGGAAGAGGCTATGGCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATATAATTTCAGCGAGGAGGTGGCAAAAGCCTGTGCT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CGCCCGGTGATTATCAACCTGCTGTTTGGTCATATAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCAGTAGGAGAGAGCCGGTGTAGCACAGCACCGGTG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCTCCTGCTCTGGTCAAGCACCTGGGCTATGACT
GTCTTAATAGAACCATTGTGGGATGGAAAC	TCGCAGCAGGAAGCAAAATCTACTGGGATGCTGTAAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTAGGTGTATATCTCAGTTCCGGGTCGGCTGTCAGCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAATAGAAGAGATTAAGCCCGCACATCTCGCAGTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGTCAGCAAGGGTAGGCCTCGTTCTGGGAGCATTTTCAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAACTGCGGAACTATGGCATATTGGCGACGGAGCAAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GTTCATAATCCAGGACTTCAGTCAATGTCAGCAAATT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ACAACAAGCCATTTGTTACTATCAGTCTTATCCAAATA
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGTGCAGAGCCAGCTCAACGACCTGCGCCGCCAGGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGGTATAATTTGCATAAAAACTGTATAAACTTAGTAT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GAAGCGGGGCCGGCAATTGAGGCGGGAGTTTGCAAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTCTAGTCTGGATTTTATGTGTTCAGGCAATCTAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTTGGATGGCTAGCTCTATAACGTCTGGCTCAACATG
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGCAATATCTAACCCATCTCGTAAGAGAAGTATTG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCGGCAGTGCCGGAACAGCCCTATATACGTGGCCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGAAGCATACAGGGTCGCTGCACTCAGCGATAATC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCAAAGATTCATTCTTGATATTGGAGGTGAAACCGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGCCAACGCTTATCATGCCTCCTCGATGCCCCTCTA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCGCATCCGGGAACTGAACCGAACTTGGCGCAGGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCTGTTGCTTACAGACAAGTTACAAGTGAGCAACCAGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTGGCGCCAGGATGGAGCATCAGCACTTCGCAAGTATC
GTCTTAATAGAACCATTGTGGGATGGAAAC	GAATTAATTCCGTGTCGGTGAAAACAACCCCATCTGCGT
GTCTTAATAGAACCATTGTGGGATGGAAAC	AAATACTCAAGGTAGGCATAATCAATGTTTGTGCCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAGCATGGGTAAGTGATTCGGTGATATTGGCCGCCG
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTGGGACTGTTGGTAATTTTGCCTACCAGAGGCTCCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CGGCTTCCTTGCGCAGCTTTTCCCGCTCGTCGCTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGTGGAAAACTTGCTCTGGCGAGAAATAGCAGCTGC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTCTATCTCATCATTCAGCTTGGCCAATTCCAGCCG
GTCTTAATAGAACCATTGTGGGATGGAAAC

>CP028514|1|1|66410-69639|CRT
GTCTTAATAGAACCATTGTGGGATGGAAAC	TGATAACGAAGGCATCAGCCCTAATCTGGCCTACTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGAGAGGTCTTGGGGGAATGCCTTCCTCAGCGCCAGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTAGGCCGGTGACGGTGTAAGGCTTCCCCTTTTCGTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCACTGCAAGCAGTAATAAAAAAGCGAAAAGGTAAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CACCTCTCCAAAGCCTGCATTATGCGTGGTACAGCAT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTTGTCAGGTATGCTGTTATTTTCAAGGGTTGCATTA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCTCATGCGCCGCAGACTGGAAGATGGCGGGGGACT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCCGGCATGGCTATGCAGGACTTAGCCAAGTACCAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	AATAGTGTGATAATAGAAAACGTCTGCTGGGGGCTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTCCGGCAGCGCGGGATGCGCTGTCAGGGGCGGCTATTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ACTGGTGTGGTAAAGACGGCAAATGGCAAGACGTCT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAAGCTTGTCCATGCCAAACTTGCGGATCCGATCAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	TGATGGTGGCAAGAAAGGAGGAGTAAATCATGATTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GTTCTGATGCCAGTATGGTGGCCGATAGCCATACCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAAGTTAGCTCCCTGCAGGTCAGCACCCCTCAGGTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCGGGTGCTGGAGGCAACATGAGAGAACGGCGCTTT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATATCGGGCCGGGAAAAGCAAGGAAGAGGCTATGGCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATATAATTTCAGCGAGGAGGTGGCAAAAGCCTGTGCT
GTCTTAATAGAACCATTGTGGGATGGAAAC	CGCCCGGTGATTATCAACCTGCTGTTTGGTCATATAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCAGTAGGAGAGAGCCGGTGTAGCACAGCACCGGTG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCTCCTGCTCTGGTCAAGCACCTGGGCTATGACT
GTCTTAATAGAACCATTGTGGGATGGAAAC	TCGCAGCAGGAAGCAAAATCTACTGGGATGCTGTAAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTAGGTGTATATCTCAGTTCCGGGTCGGCTGTCAGCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAATAGAAGAGATTAAGCCCGCACATCTCGCAGTGG
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGTCAGCAAGGGTAGGCCTCGTTCTGGGAGCATTTTCAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAACTGCGGAACTATGGCATATTGGCGACGGAGCAAG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GTTCATAATCCAGGACTTCAGTCAATGTCAGCAAATT
GTCTTAATAGAACCATTGTGGGATGGAAAC	ACAACAAGCCATTTGTTACTATCAGTCTTATCCAAATA
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGTGCAGAGCCAGCTCAACGACCTGCGCCGCCAGGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	AGGTATAATTTGCATAAAAACTGTATAAACTTAGTAT
GTCTTAATAGAACCATTGTGGGATGGAAAC	GAAGCGGGGCCGGCAATTGAGGCGGGAGTTTGCAAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTCTAGTCTGGATTTTATGTGTTCAGGCAATCTAA
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTTGGATGGCTAGCTCTATAACGTCTGGCTCAACATG
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGCAATATCTAACCCATCTCGTAAGAGAAGTATTG
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCGGCAGTGCCGGAACAGCCCTATATACGTGGCCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGAAGCATACAGGGTCGCTGCACTCAGCGATAATC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CCAAAGATTCATTCTTGATATTGGAGGTGAAACCGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	ATGCCAACGCTTATCATGCCTCCTCGATGCCCCTCTA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGCGCATCCGGGAACTGAACCGAACTTGGCGCAGGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GCTGTTGCTTACAGACAAGTTACAAGTGAGCAACCAGA
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTGGCGCCAGGATGGAGCATCAGCACTTCGCAAGTATC
GTCTTAATAGAACCATTGTGGGATGGAAAC	GAATTAATTCCGTGTCGGTGAAAACAACCCCATCTGCGT
GTCTTAATAGAACCATTGTGGGATGGAAAC	AAATACTCAAGGTAGGCATAATCAATGTTTGTGCCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CAGCATGGGTAAGTGATTCGGTGATATTGGCCGCCG
GTCTTAATAGAACCATTGTGGGATGGAAAC	TTGGGACTGTTGGTAATTTTGCCTACCAGAGGCTCCC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CGGCTTCCTTGCGCAGCTTTTCCCGCTCGTCGCTCA
GTCTTAATAGAACCATTGTGGGATGGAAAC	GGTGGAAAACTTGCTCTGGCGAGAAATAGCAGCTGC
GTCTTAATAGAACCATTGTGGGATGGAAAC	CTCTATCTCATCATTCAGCTTGGCCAATTCCAGCCG
GTCTTAATAGAACCATTGTGGGATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028514.1\|AVX29686.1\|59358_59865_+\|CRISPR-associated-exonuclease,-Cas4-family	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP028514.1\|AVX29704.1\|78401_78671_+\|Ribosomal-50S-subunit-recycling-heat-shock-protein,-contains-S4-domain	unknown	unknown	gnl\|CDD\|224109
CP028514.1\|AVX29696.1\|69707_69965_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|213197
CP028514.1\|AVX29703.1\|78058_78331_+\|bacterial-nucleoid-protein-Hbs	unknown	unknown	gnl\|CDD\|259853
CP028514.1\|AVX29690.1\|62822_64991_+\|CRISPR-associated-helicase,-Cas3-family	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP028514.1\|AVX29705.1\|78735_79698_+\|stage-II-sporulation-protein-D	unknown	unknown	gnl\|CDD\|274252
CP028514.1\|AVX29688.1\|61205_62201_+\|CRISPR-associated-autoregulator,-Cst2-family	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP028514.1\|AVX29700.1\|74491_75583_+\|peptidyl-prolyl-cis-trans-isomerase-C	unknown	unknown	gnl\|CDD\|234605
CP028514.1\|AVX29702.1\|76482_77976_+\|tetrapyrrole-methylase-family-protein-/-MazG-family-protein	unknown	unknown	gnl\|CDD\|226465
CP028514.1\|AVX29691.1\|65004_65988_+\|CRISPR-associated-protein,-Cas1-family	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
CP028514.1\|AVX29683.1\|55303_55942_+\|large-subunit-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|235534
CP028514.1\|AVX29701.1\|75853_76417_+\|AbrB-family-transcriptional-regulator,-stage-V-sporulation-protein-T	unknown	unknown	gnl\|CDD\|131898
CP028514.1\|AVX29687.1\|59883_61209_+\|CRISPR-associated-protein,-Cst1-family	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
CP028514.1\|AVX29689.1\|62203_62854_+\|CRISPR-associated-protein,-Cas5t-family	cas5	COG1688_cas5_CAS-I	gnl\|CDD\|273860
CP028514.1\|AVX29698.1\|70687_70876_+\|hypothetical-protein	unknown	unknown	unknown
CP028514.1\|AVX29697.1\|70326_70710_+\|hypothetical-protein	unknown	unknown	unknown
CP028514.1\|AVX29684.1\|57875_58448_+\|peptidyl-tRNA-hydrolase,-PTH1-family	unknown	unknown	gnl\|CDD\|235457
CP028514.1\|AVX29699.1\|70921_74458_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
CP028514.1\|AVX29692.1\|65989_66253_+\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP028514.1\|AVX29685.1\|58478_59231_+\|CRISPR-associated-protein,-Cas6-family	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187889

Protein	Function_ID	Function_description	E-value
CP028514.1\|AVX29686.1\|59358_59865_+\|CRISPR-associated-exonuclease,-Cas4-family	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.45928e-57
CP028514.1\|AVX29704.1\|78401_78671_+\|Ribosomal-50S-subunit-recycling-heat-shock-protein,-contains-S4-domain	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	4.5287e-29
CP028514.1\|AVX29696.1\|69707_69965_+\|ABC-transporter	gnl\|CDD\|213197	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A. This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.45108e-32
CP028514.1\|AVX29703.1\|78058_78331_+\|bacterial-nucleoid-protein-Hbs	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	7.67481e-44
CP028514.1\|AVX29690.1\|62822_64991_+\|CRISPR-associated-helicase,-Cas3-family	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.12695e-82
CP028514.1\|AVX29705.1\|78735_79698_+\|stage-II-sporulation-protein-D	gnl\|CDD\|274252	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General].	4.04703e-61
CP028514.1\|AVX29688.1\|61205_62201_+\|CRISPR-associated-autoregulator,-Cst2-family	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.69544e-66
CP028514.1\|AVX29700.1\|74491_75583_+\|peptidyl-prolyl-cis-trans-isomerase-C	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	1.99165e-60
CP028514.1\|AVX29702.1\|76482_77976_+\|tetrapyrrole-methylase-family-protein-/-MazG-family-protein	gnl\|CDD\|226465	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only].	4.24588e-180
CP028514.1\|AVX29691.1\|65004_65988_+\|CRISPR-associated-protein,-Cas1-family	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.05547e-171
CP028514.1\|AVX29683.1\|55303_55942_+\|large-subunit-ribosomal-protein-L25	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	6.94327e-66
CP028514.1\|AVX29701.1\|75853_76417_+\|AbrB-family-transcriptional-regulator,-stage-V-sporulation-protein-T	gnl\|CDD\|131898	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See pfam04014). [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination].	6.71957e-98
CP028514.1\|AVX29687.1\|59883_61209_+\|CRISPR-associated-protein,-Cst1-family	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	1.39675e-32
CP028514.1\|AVX29689.1\|62203_62854_+\|CRISPR-associated-protein,-Cas5t-family	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	7.48111e-33
CP028514.1\|AVX29684.1\|57875_58448_+\|peptidyl-tRNA-hydrolase,-PTH1-family	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	2.1939e-102
CP028514.1\|AVX29699.1\|70921_74458_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
CP028514.1\|AVX29692.1\|65989_66253_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.35415e-32
CP028514.1\|AVX29685.1\|58478_59231_+\|CRISPR-associated-protein,-Cas6-family	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	2.71386e-47

>CP028514.1|AVX29692.1|65989_66253_+|CRISPR-associated-protein-Cas2
MYIVIVYDIGEKRVAKVCKFLRKYLYWVQNSVFEGDLTESQFEKVKHGLKKLIKEDEDMVLYYVFSTPKWVERGILGKEKNPIDAFL
>CP028514.1|AVX29691.1|65004_65988_+|CRISPR-associated-protein,-Cas1-family
MNRTIYIFNNGRLKRKDNTLYFETEENKKPLPIENIESIYFFGEIDLNTKAVNFLAQNNISLHFFNYYGFYTGSFIPREYLNSGYLLVKQVEHYLDREKRMVLAKEIVEAASDNILRNLYYYKNRGYDLEHEISGITILKKEINKTKEPEELMAIEGNIRQYYYRAFPIITGYEMEKRVKRPPDNILNTLISFGNTVFYTTVLSQIYHTQLNPTISYLHEPGQRRFSLALDLSEIFKPIIVDRVIFTVLNRNIVTEDDFNVEEGYCFLKEKGKKAFLQTYEEKLRTTIEHRTLKRHVSYRTLVKLEAYRLIKHLIGDEKYKGFRAWW
>CP028514.1|AVX29690.1|62822_64991_+|CRISPR-associated-helicase,-Cas3-family
MNQNILAKPDESLQEHTHKVLKVLRNLMNVYRNAPVYTGDILFYKKLFWAAFLHDFGKGALGFQKQLTEKKRWGFRHELLSTAFLNFLPFSDKDKEDIALWIATHHKDLFLLRERYLDKEVLNKRFEEIKPYMDDLFKLLQYGGQLYYEVFGEKVDFVEKELVEVSSIVSIILKQIRKIKFVDDISIKDKMLGFLGRGFLIAADHLASAGKTYIERFSSPSEVYKFSNLFSTQKYCQNYRDNLLLIAPTGSGKTEAALFWSEANQSEGNGDRVFYILPYTASINAMYERLAKDFGEKKVGFLHGKAAYYLYKKLNEDDLKKIRDLKDLNHKIFKPIKIMTPFQLIKTFFGIKGFEMNLAELLEAKIIIDEVHAYDPRTIALLLSSLRYLQKNFNVRILVMSATIPRFLKELIMQKLTINQEISLTPNEWNRFTRHRVNILQGDIFDHLALIRKHIEQGKKVLVILNTVKRAQEVYQLFFDIPCHKKLLHGRFIQRDREAIEKEISKLGLLVATQAVEVSLDIDYDLLFTEPAPLDALLQRFGRVNRRGKKGIADVFVFSKGSREDKYIYQPELVNRSIEVLEKVDILQEVKVQEMIDYVYENGFNQKAQSLYDEVETNMNSLLDSLYPFIVSEENEERFYQLFNSIDIVPERFYGEYIDLIEKEKYFEAMGYIASVNFGQFIKLKKQGLIYQKEDTLITSCRYDDEIGLVIDEPERVLENFF
>CP028514.1|AVX29689.1|62203_62854_+|CRISPR-associated-protein,-Cas5t-family
MKVLKVIIKGITASFRYPLFISGYQPTLSVPPLSTVLGLLSAAAGKVIDQVDFGLAYNFTYEARAVDLETAYEIGDNLSFKTNVWRREFLFHPELTLYVTDLELRPIFEKPVFQLLLGRSQDLAQVAKIEEIELMQTSKAILKGCIVPADTPGAIGPLVSLPVMFDSHFPRKRLKADKFIIVDRECQIEYERNLYIDLAESRGVFLYEPEYFSQAG
>CP028514.1|AVX29688.1|61205_62201_+|CRISPR-associated-autoregulator,-Cst2-family
MRKHCLGFVLIDAPHSALNNAGTDEGARTENTIAVKKIKKGREVYPYVSAQAWRYWWREVLGSKFNWTMSPIARESKTAFTENNPLKYYDDDVFGYMRAEKKETFTRVSPLKCSPLVSVVPFKPVDDFGVMARQEGDPVPYEHQFYSTVLKGIFALDLDSVGRFTTVNKTGFKNISKELLQKAHDFNAQVVDGEAILTAQERAKRAKETLLALAYLFGGAKQTLHLTDVSPKFIILLILDGGNHLLMNVTGEKEGKPIINFDYLEEVLLDYQDSIVSNVYIGKASGFMDEVDLNRFKARMAEKGFARIEIGTVKQMIESFADEVEKYYLER
>CP028514.1|AVX29687.1|59883_61209_+|CRISPR-associated-protein,-Cst1-family
MKYFTYTGNPFIDTGLNVVLSWHNKKAPEELIVEDLEKMIEISARLYGSEKWLKNLYSVFPNNPFTNPSIKNKESRYLEFMNDLKNNIKPLDTGRGCVGCGKREPYKKFTKTDIPLTGTKDLRNLFPAAEAGESYCALCAMLIQFMPMALFACGGRFMLVHSANSEINGIYVRRCLKEIKQQIALGDMSGVFDQGYKNPINALFFLAEEIVRDINDFFDEPVMVRIYSFTNYNQSPDLNIYDLPAPVFYFIVQAQRKGFTQAWNELKNKGYTGKKAENTSKEKRKNLNNEVLLKLLNEESVVPYFLNISTRSIVGNFEFLSLYLKEVRRYMQRRIESIKRLGDELAIFIRENNDQRRLYLLETVDKFDDFRNQLRIIYRKRLDMGISTPLFTVDEYVENLFPDGPVNWRETRDLILFRIYETLSGWLAENAGEENEEEEEE
>CP028514.1|AVX29686.1|59358_59865_+|CRISPR-associated-exonuclease,-Cas4-family
MQNYLMELELGGLEINYYFVCKRKLWLYSRYIRQETNHDRVELGQFIHEESYRRQKKEIEIGSIKVDLLQDGAICEIKLSSRMEEAHLWQLYYYLYYLKKQGFNQVKGVLLFPKERRKKEVILTQEVEKELKKIIAQIITIKKEELPPEKLNKRSFCTKCAYFEFCYA
>CP028514.1|AVX29685.1|58478_59231_+|CRISPR-associated-protein,-Cas6-family
MRLDIILKTKDKEVLLPFNYQYQITSFIYEMVAKSSPDYATKLHDEGFGEKRFKFFTFSQIVARKKKIVSDGVWLFGEFVLKISSPLYDFLFHLLNGLYKQNNIKIGREIFLIKDILLYENPVIKSGMNFVCLSPIVVSTIKDDFSTPYYIRYTEEPELFNEKLRQNLIRKYQTYYGRAPAADNLQIVFDQEYLQRHKGTKLIHYRDQKILGYLAPFTIYGSDELITFGYDTGFGEKNSMGFGFVELRKR
>CP028514.1|AVX29684.1|57875_58448_+|peptidyl-tRNA-hydrolase,-PTH1-family
MKMLVGLGNPGPQYELTRHNVGFLVIDALADKVGVSSFKQQAGALVASVNYQGEKLLLVKPQTYMNLSGQAVGELARYYKIPAQDVLVIYDDMDNPFGQLRLRARGSSGGHNGIKSIISHLGTEEFPRLKVGIGRPRPGQSAADYVLEPFSNEERAALGRIIPAAVDRVLSVVDKGIVAAMNEFNGKRVC
>CP028514.1|AVX29683.1|55303_55942_+|large-subunit-ribosomal-protein-L25
MTGQNLTARIRERDGKGHNRRLRRSGWVPGVVYGNGIDGSILVAVDKVQLRQLLNSPGGRTRLLRLDSGLPTGPIDALIKEVQWDPVTEELLHVDLQKVETNRKVHAQVPVHLVGEAQGVKAGGIIQFNVRQLEVECLPQDIPAEITIDISHLKIGGMIRVKDIPVPPGCQIAQDPDTIIAAVIAPRMQVEDVEVEVVESVPAKQATTTAAS
>CP028514.1|AVX29696.1|69707_69965_+|ABC-transporter
MKIVKMKDVIKRFGDVIALDNVNLEIEEGEIYGLLGPNGAGKTTAISIICGLLNFDRGKVYVFDKNIRKEPEFIKKSIGIVPSFS
>CP028514.1|AVX29697.1|70326_70710_+|hypothetical-protein
MELVAACLAALVAVLFNRRVQAETGWQIAVITAPLIEELAKTGFAKILSAQVLPVHLYFGLIEAIYDAWAKPERHLLPALLSLLSHGFFGYLTVKSGILAALFAHFSWNGLIWYMQRRRQNAGNILL
>CP028514.1|AVX29698.1|70687_70876_+|hypothetical-protein
MRVIYYCELCQEIVDEWEIALTEPDNPSIMEMHMEPTLCPDCMTAMGKDEGWLGQIKYNYLH
>CP028514.1|AVX29699.1|70921_74458_+|transcription-repair-coupling-factor
MTRGLVGPLLQAKELQDLWRDLGVKKKTALVYGVSGAVSASLLAAWYRLRQQPLLAIVRDLADAKRLCDDLSTFLPEEEILLYPAQELLPWDIEASSRELLTARLKVLGALARGRTSLIVAPVAALSRAVTPPEQFKNYLVTLNKGQEIEPTALAAQLLQMGYERVSQVEVAGQFSWRGGIVDIFPASASEPVRLEFFDVEIDSLRLFDPVSQRSLREIEQAEILPARDYFATAADWQQAARVLEKEYQNLRKKLIGLQQREAVGRLDQKLKDLLSRLKEGLIPAGLDAFAAYVMPEKATLLDYLPTGALIAVEDPNRVREKALAWDDERGETFASWLERGMALPGQEALYFSWEDIWRQLTGRPLLGLALLPREQTGWRPELLLNLNSRTAPLYQGNLEELTRDLKNYKRQGYAVALLTTHTQRSQQLLDLLKEAEIEAVYLGRLQQEFRTGNIVITRGELSAGFEFPQSKILILTERELFGQSKKGRKAREIKPAGGQKISAFTDLKIGDYVVHVNHGIGVYEGVEQLSVGGITRDYLVVSYAGADRLYIPTEQISLLQKYIGTDGQKPRISKLGGQEWQKAKAKARSAVKEMAEELIKLYAAREALKGFAFSPDTVWQQEFEQAFPYEETPDQLQAIAEIKADMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDNKQVAILVPTTILAQQHYNTCLERFQGFPVSIDLLSRFRSAREQKATLKKLASGQVDIIIGTHRLLQDDVKFRDLGLLIVDEEQRFGVAHKEKLKQLKQTVDVLTLSATPIPRTLHMALAGVRDMSLLETPPEERYPVQTFVVEFNPLMIRDAILRELARGGQVYFVHNRIEDMDRIFTFLTQLVPEARIAIGHGQMREDELEKVMLDFLNQEYDVLLCTTIIETGLDIPNVNTIIIDNADTMGLAQLYQLRGRVGRSNRMAYAYLTYRKDKVLTEIAEKRLQTLREFTELGSGFKIAMRDLEIRGAGNLLGPEQHGHIMAIGFDLYTQMLEEAIRELKGEIKEEPLETTVEIAIDAYLPADYIEDGAVKMEIYRKIMLCRTEEQLLDLSDELVDRFGDPPLPVVNLLTIARIKILGQEAGITYIGKQQEHLIIKLAPDAPLEPVKILRLPGKIRGLNIVGGAEPVIRVPWSKRDPGLNWVEKIIREIKYCGIGSENLV
>CP028514.1|AVX29700.1|74491_75583_+|peptidyl-prolyl-cis-trans-isomerase-C
MYKLKKLVASVLTAAMLALVAGCGSNAVATVNGEDITKEQFERRLEKMKAVYKQNGANFDTEQGKAMLKAIQKQVLDGMIEETILLQEAKKQGVLPSDADVQKRVEETIKKFESKEKFLEALKNYNMDEKEFAEWTKQNLALDALYNKVTANIKVTDEEIKKYYEENKEQFKQPEQVRARHILIKFDTQQEKVGRTEEQAKKMAQDLIKELEKGADFAKLAKEKSEDPGSKDNGGEYTFSRGQMVQEFEDAAFSLKPGSFTKEPVKTQYGYHIIKVEERIPAKERTFEEVKGELALQLPMQKKQEAFAKYTAELKSKAKIEIKDKELAASPAPAPSNGSQLPPGHPSTSGGSSSAPQPAKPAQ
>CP028514.1|AVX29701.1|75853_76417_+|AbrB-family-transcriptional-regulator,-stage-V-sporulation-protein-T
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPIGELGDFAREYAESLHEAVGHICCITDRDNVIAVAGGSKKEFMNKPIGPAVEKAMEERKAVIINNPGEHPHCLGCPVDDEDDTCKFTAEVIAPIIAEGDQIGAVLILSKDPNVRMGELELKLAETAAGFLAKQMEQ
>CP028514.1|AVX29702.1|76482_77976_+|tetrapyrrole-methylase-family-protein-/-MazG-family-protein
MAEIYIVGLGPGDEQTFPLGNWQLLKGFTGPIIFRTYRHPIVDWLKQQGITGASCDHFYEEAEDFAAVYEKIVQELVGQATQKGQLAYCVPGHPLVAETSVQWLLKRCESEGITVRILPAMSFLDAIYAALKIDPAQGGLQIIDALALAQTRINPRNGLLLLQVYNQLVASETKLTLMEFYPDEYPVTVIRGAGLADEKKVVIPLYELDRLPWIDHLTSIYLAPNPEGKPEFGHYALEPLATVMEKLRSEQGCPWDREQTHQSLKPFLIEEAYEVLEAIDNQDMEALCEELGDVLLQVVFHTQIAREHEYFDLNDVIMVITEKMIRRHPHVFADTQVADSREVIRNWEQIKAQEKKEQGKEEKSLLAGVPRSLPALLQAYKLQAKAAKVGFDWDNWRGAWDKVQEELRELGQVLDDRQKRQEELGDLLFALVNLARFFDIDPEEALKGTCSKFRRRFAFIEQTVRERGQKLEELALAELDKIWELAKNHENISKKNG
>CP028514.1|AVX29703.1|78058_78331_+|bacterial-nucleoid-protein-Hbs
MNKTDLVNSVAEKAELTKKDAEKAVNAVFASIEEALKKGEKVQLVGFGTFEVRSRGERKGRNPQTGEEITIAAAKVPAFKAGKALKEAVM
>CP028514.1|AVX29704.1|78401_78671_+|Ribosomal-50S-subunit-recycling-heat-shock-protein,-contains-S4-domain
MRLDKFLKVSRIIKRRTLAKEVCDGGRIQINGRPAKASSEVKAGDILELDFGQRRLRVRVVEIKENVPAALAGQLYEILEEIKVRETTF
>CP028514.1|AVX29705.1|78735_79698_+|stage-II-sporulation-protein-D
MFRWGWQKILLSLLVVMTLIGGGCALRKPLPPGQPPGPAGREFTEEPTISLYDNKTKQTKKIKLEEYVAGVVAAEMDTSWPVNALGAQAILARTFTLENIKAGRVKKLYGADISTDIEESQAYAPEKINDNVRKAVQLTRGQVIRWQGKYVKAWFHACCGGKTASAKEGLAYEKEPTPYLSTVADGCMAITTPENKHWEVKLSGEELARAVKQATGQDPGQVTSVQIIKRGPSGRVESLKVGNVAISGPALRLAVGSEKMRSMMLEDIQNAGGTFIFKGRGFGHGVGLCQWGAKKMAAEGKQPWSIVKFYYKGVKIEKLW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

144075 : 156952

Synechococcus_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX29769.1\|144075_147849_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.1e-32	25.2
AVX29770.1\|148269_149640_+	putative MFS transporter, AGZA family, xanthine/uracil permease	A0A0R6PHV4	Moraxella_phage	8.3e-56	33.9
AVX29771.1\|149666_150191_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-25	45.8
AVX29772.1\|150307_151600_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.3e-23	33.4
AVX29773.1\|151625_152333_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	1.9e-40	42.8
AVX29774.1\|152351_153761_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.8e-64	37.0
AVX29775.1\|153757_154786_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.4e-68	45.6
AVX29776.1\|154787_155414_+	formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-29	42.5
AVX29777.1\|155413_156952_+	IMP cyclohydrolase phosphoribosylaminoimidazolecarboxamide formyltransferase	Q58MG4	Prochlorococcus_phage	1.7e-81	53.7

DBSCAN-SWA_2

331720 : 339515

Pseudomonas_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX29949.1\|331720_332788_+	bacterial peptide chain release factor 1 (bRF-1)	W8EDB3	Pseudomonas_phage	7.8e-09	45.2
AVX29950.1\|332799_333669_+	[protein release factor]-glutamine N5-methyltransferase	NA	NA	NA	NA
AVX29951.1\|333673_334702_+	translation factor SUA5	A0A291ATS8	Pandoravirus	5.3e-55	43.1
AVX29952.1\|334703_335156_+	protein-tyrosine phosphatase	A0A2H4PQT9	Staphylococcus_phage	1.2e-06	33.6
AVX29953.1\|335180_335630_+	ribose-5-phosphate isomerase	NA	NA	NA	NA
AVX29954.1\|335655_336903_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.6e-100	54.8
AVX29955.1\|336924_337554_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
AVX29956.1\|337566_338025_+	dCMP deaminase	A0A1D8ESY8	Mycobacterium_phage	4.8e-24	48.0
AVX29957.1\|338021_338351_+	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA	NA	NA	NA
AVX29958.1\|338411_339515_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing)	A0A1V0SAG5	Catovirus	7.5e-23	29.3

DBSCAN-SWA_3

1154473 : 1165601

Staphylococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX30748.1\|1154473_1156348_+	serine/threonine protein kinase	W5S4J6	Pithovirus	1.7e-19	33.2
AVX30749.1\|1156358_1157225_+	ribosome biogenesis GTPase	NA	NA	NA	NA
AVX30750.1\|1157227_1157881_+	ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA
AVX30751.1\|1157882_1158908_+	Acetoin utilization deacetylase AcuC	A0A2K9L473	Tupanvirus	2.4e-39	38.6
AVX30752.1\|1159165_1160329_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase	A0A1V0SE20	Indivirus	1.0e-46	34.8
AVX30753.1\|1160331_1160988_+	riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	5.4e-37	41.7
AVX30754.1\|1161000_1162212_+	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.0e-105	49.9
AVX30755.1\|1162236_1162710_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-41	59.3
AVX30756.1\|1162855_1164355_+	hypothetical protein	NA	NA	NA	NA
AVX30757.1\|1164428_1165601_+	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6)	B6DZZ7	Stx2-converting_phage	5.0e-33	31.9

DBSCAN-SWA_4

1361432 : 1370377

Halovirus(14.29%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVX30964.1\|1361432_1362167_+	Organic radical activating enzyme	R4TAH8	Halovirus	4.1e-09	29.9
AVX30965.1\|1362180_1362741_+	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	1.4e-49	57.1
AVX30966.1\|1362762_1362942_+	Protein of unknown function (DUF4264)	NA	NA	NA	NA
AVX30967.1\|1362956_1364234_+	putative tyrosine transporter P-protein	NA	NA	NA	NA
AVX30968.1\|1364245_1365013_+	5'-nucleotidase /3'-nucleotidase /exopolyphosphatase	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.7e-47	40.4
AVX30969.1\|1365124_1365586_+	hypothetical protein	NA	NA	NA	NA
AVX30970.1\|1365609_1367091_+\|protease	ATP-dependent metalloprotease FtsH	E5ESM9	Bathycoccus_sp._RCC1105_virus	1.7e-75	41.5
AVX30971.1\|1367162_1367669_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.1e-21	41.5
AVX30972.1\|1367672_1369277_+	ATP-dependent RNA helicase DeaD	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.7e-68	39.8
AVX30973.1\|1369351_1370377_+	recombination protein RecA	A0A0S2MVG1	Bacillus_phage	1.0e-122	66.9

DBSCAN-SWA_5

2193001 : 2240846

Clostridium_phage(17.65%)

tail,integrase,transposase,terminase,capsid,tRNA,portal

attL 2191348:2191361|attR 2197085:2197098

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2191348:2191361	attL	NA	NA	NA	NA
AVX31757.1\|2193001_2194429_-\|transposase	Putative transposase DNA-binding domain-containing protein	F9VHY8	Thermus_phage	4.2e-18	27.4
AVX31758.1\|2194382_2195042_-\|integrase	putative site-specific integrase-resolvase	Q331V0	Clostridium_botulinum_C_phage	1.1e-45	45.0
AVX31759.1\|2195104_2195332_-	hypothetical protein	NA	NA	NA	NA
AVX31760.1\|2195470_2198695_+	Superfamily II DNA or RNA helicase, SNF2 family	A0A2L0WU59	Oxyplax_ochracea_nucleopolyhedrovirus	5.2e-40	28.1
2197085:2197098	attR	NA	NA	NA	NA
AVX31761.1\|2198752_2199547_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
AVX31762.1\|2199587_2200148_-	putative nucleic acid-binding protein, contains PIN domain	NA	NA	NA	NA
AVX31763.1\|2200137_2200872_-	Zn-dependent peptidase ImmA, M78 family	NA	NA	NA	NA
AVX31764.1\|2200874_2201222_-	Transcriptional regulator, contains XRE-family HTH domain	NA	NA	NA	NA
AVX31765.1\|2201485_2202058_-	hypothetical protein	NA	NA	NA	NA
AVX31766.1\|2202281_2203526_-\|transposase	IS4 transposase	NA	NA	NA	NA
AVX31767.1\|2203866_2204070_-	Protein of unknown function, DUF488	NA	NA	NA	NA
AVX31768.1\|2204666_2205152_-\|tRNA	tRNA(adenine34) deaminase	NA	NA	NA	NA
AVX31769.1\|2205565_2206771_-	MFS transporter, YNFM family, putative membrane transport protein	NA	NA	NA	NA
AVX31770.1\|2206837_2208109_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.5e-95	51.4
AVX31771.1\|2208256_2208901_-	alpha-ribazole phosphatase/probable phosphoglycerate mutase	NA	NA	NA	NA
AVX31772.1\|2208930_2210508_-	D-3-phosphoglycerate dehydrogenase	A0A1M7XU89	Cedratvirus	1.0e-49	35.5
AVX31773.1\|2210554_2211700_-	L-aspartate aminotransferase apoenzyme /phosphoserine aminotransferase apoenzyme	NA	NA	NA	NA
AVX31774.1\|2212376_2212946_-	pyridoxal phosphate synthase yaaE subunit	NA	NA	NA	NA
AVX31775.1\|2212947_2213829_-	pyridoxal phosphate synthase yaaD subunit	NA	NA	NA	NA
AVX31776.1\|2213977_2214520_-	Cytochrome c7	NA	NA	NA	NA
AVX31777.1\|2214535_2214649_-	hypothetical protein	NA	NA	NA	NA
AVX31778.1\|2214612_2215380_-	Cytochrome b subunit of formate dehydrogenase	NA	NA	NA	NA
AVX31779.1\|2215391_2216282_-	Doubled CXXCH motif	NA	NA	NA	NA
AVX31780.1\|2216309_2216501_-	hypothetical protein	NA	NA	NA	NA
AVX31781.1\|2216514_2216709_-	hypothetical protein	NA	NA	NA	NA
AVX31782.1\|2216796_2216988_-	hypothetical protein	NA	NA	NA	NA
AVX31783.1\|2217087_2217411_-	hypothetical protein	NA	NA	NA	NA
AVX31784.1\|2218995_2219418_-	hypothetical protein	NA	NA	NA	NA
AVX31785.1\|2219442_2219976_-	hypothetical protein	NA	NA	NA	NA
AVX31786.1\|2220120_2220423_-	hypothetical protein	NA	NA	NA	NA
AVX31787.1\|2220423_2222007_-	hypothetical protein	NA	NA	NA	NA
AVX31788.1\|2222020_2222446_-	hypothetical protein	A0A159B6I9	Gordonia_phage	4.4e-32	57.8
AVX31789.1\|2222429_2222693_-	hypothetical protein	NA	NA	NA	NA
AVX31790.1\|2222696_2223347_-	N-acetylmuramoyl-L-alanine amidase	A0A0A7RTQ5	Clostridium_phage	4.4e-15	36.1
AVX31791.1\|2223348_2223591_-	hypothetical protein	NA	NA	NA	NA
AVX31792.1\|2223649_2224552_-	hypothetical protein	A0A1L2K2Q1	Aeribacillus_phage	1.5e-05	31.7
AVX31793.1\|2224559_2224751_-	hypothetical protein	NA	NA	NA	NA
AVX31794.1\|2224755_2225904_-	hypothetical protein	NA	NA	NA	NA
AVX31795.1\|2225905_2227798_-	hypothetical protein	NA	NA	NA	NA
AVX31796.1\|2227797_2228154_-	hypothetical protein	NA	NA	NA	NA
AVX31797.1\|2228158_2230840_-	tape measure domain-containing protein	M1HMP3	Bacillus_virus	9.3e-27	39.8
AVX31798.1\|2230841_2230988_-	hypothetical protein	NA	NA	NA	NA
AVX31799.1\|2231055_2231412_-	hypothetical protein	NA	NA	NA	NA
AVX31800.1\|2231434_2231839_-\|tail	Phage tail tube protein	A0A1B0XTL5	Freshwater_phage	9.4e-32	55.6
AVX31801.1\|2231853_2232573_-	hypothetical protein	A0A1B0XTM3	Freshwater_phage	3.6e-34	39.9
AVX31802.1\|2232572_2232734_-	hypothetical protein	NA	NA	NA	NA
AVX31803.1\|2232730_2233123_-	hypothetical protein	NA	NA	NA	NA
AVX31804.1\|2233135_2233489_-\|tail	Bacteriophage HK97-gp10, putative tail-component	A0A1J0MCP5	Streptomyces_phage	6.5e-05	30.7
AVX31805.1\|2233499_2233796_-	hypothetical protein	NA	NA	NA	NA
AVX31806.1\|2233789_2234257_-	hypothetical protein	NA	NA	NA	NA
AVX31807.1\|2234272_2234404_-	hypothetical protein	NA	NA	NA	NA
AVX31808.1\|2234450_2235404_-\|capsid	phage major capsid protein, HK97 family	D2J006	Enterococcus_phage	2.7e-98	59.4
AVX31809.1\|2235425_2236010_-	protein of unknown function (DUF4355)	NA	NA	NA	NA
AVX31810.1\|2236108_2236285_-	hypothetical protein	NA	NA	NA	NA
AVX31811.1\|2236290_2237712_-	Phage Mu protein F like protein	B5LPR2	Bacillus_virus	7.7e-12	21.0
AVX31812.1\|2237711_2239151_-\|portal	Phage portal protein, SPP1 Gp6-like	A0A0N7GFE4	Paenibacillus_phage	9.1e-45	35.3
AVX31813.1\|2239150_2240410_-\|terminase	phage terminase, large subunit, PBSX family	B6CXD2	Clostridium_phage	4.6e-117	50.7
AVX31814.1\|2240399_2240846_-\|terminase	phage terminase small subunit	A0A0A8WDX8	Clostridium_phage	2.6e-35	60.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage