CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028826	Pseudomonas fluorescens strain MS82 chromosome, complete genome	0 crisprs	csa3,DinG,cas3,DEDDh,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1270852 : 1380724

109

Pseudomonas_phage(46.3%)

tail,tRNA,plate,holin,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA38111.1\|1270852_1271671_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	3.0e-08	33.9
AWA38112.1\|1271825_1272233_-	Fe-S metabolism protein SufE	NA	NA	NA	NA
AWA38113.1\|1272229_1273435_-	cysteine desulfurase CsdA	Q2XUY6	environmental_halophage	4.9e-68	35.6
AWA38114.1\|1273560_1274595_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
AWA38115.1\|1274626_1274989_-	ArsC family reductase	NA	NA	NA	NA
AWA38116.1\|1275170_1276802_+	Na+/H+ antiporter	NA	NA	NA	NA
AWA38117.1\|1276826_1277498_-	hypothetical protein	NA	NA	NA	NA
AWA38118.1\|1277680_1278415_-	peptidase M12	NA	NA	NA	NA
AWA38119.1\|1278580_1279780_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
AWA38120.1\|1279823_1282526_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
AWA38121.1\|1282566_1283349_-	type I methionyl aminopeptidase	NA	NA	NA	NA
AWA38122.1\|1283723_1284461_+	30S ribosomal protein S2	NA	NA	NA	NA
AWA38123.1\|1284651_1285515_+	elongation factor Ts	NA	NA	NA	NA
AWA38124.1\|1285726_1286470_+	UMP kinase	NA	NA	NA	NA
AWA38125.1\|1286466_1287024_+	ribosome-recycling factor	NA	NA	NA	NA
AWA38126.1\|1287038_1287794_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.1e-17	38.1
AWA38127.1\|1287793_1288600_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AWA42396.1\|1288596_1289787_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
AWA38128.1\|1291266_1293642_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
AWA38129.1\|1293687_1294191_+	OmpH family outer membrane protein	NA	NA	NA	NA
AWA38130.1\|1294194_1295250_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
AWA38131.1\|1295356_1295797_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AWA38132.1\|1295793_1296570_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AWA38133.1\|1296572_1297703_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
AWA38134.1\|1297714_1298341_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.3e-27	38.9
AWA38135.1\|1298417_1301939_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	4.1e-200	37.0
AWA38136.1\|1302078_1303026_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
AWA38137.1\|1303173_1304502_+\|tRNA	tRNA lysidine(34) synthetase TilS	A7IXR9	Paramecium_bursaria_Chlorella_virus	3.8e-05	24.6
AWA38138.1\|1304776_1306408_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.4e-158	53.5
AWA38139.1\|1306413_1307259_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	4.7e-49	42.4
AWA38140.1\|1307415_1308705_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	6.9e-137	59.2
AWA38141.1\|1308876_1309155_+	cell division protein FtsB	NA	NA	NA	NA
AWA38142.1\|1309151_1309859_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AWA38143.1\|1309855_1310752_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWA38144.1\|1310868_1311981_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.1e-32	29.5
AWA38145.1\|1312036_1312882_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AWA38146.1\|1312925_1313399_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AWA38147.1\|1313395_1314454_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AWA38148.1\|1314441_1315191_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.0e-68	53.0
AWA38149.1\|1315190_1315868_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.1e-43	50.2
AWA38150.1\|1316080_1316962_+	peptigoglycan-binding protein LysM	A0A0S2SXL7	Bacillus_phage	6.6e-06	33.3
AWA38151.1\|1317068_1318076_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AWA38152.1\|1318564_1318888_-	ferredoxin family protein	NA	NA	NA	NA
AWA38153.1\|1319051_1321634_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.6e-28	22.8
AWA38154.1\|1321844_1322579_+	XRE family transcriptional regulator	B5TK58	Pseudomonas_phage	5.0e-132	95.1
AWA38155.1\|1323106_1323526_+	hypothetical protein	NA	NA	NA	NA
AWA42397.1\|1323656_1324076_+\|tail	tail assembly chaperone	NA	NA	NA	NA
AWA38156.1\|1324219_1324411_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	7.3e-11	84.2
AWA38157.1\|1324415_1324994_+	DUF642 domain-containing protein	NA	NA	NA	NA
AWA38158.1\|1325104_1325443_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	3.2e-49	87.3
AWA38159.1\|1325517_1326039_+	hypothetical protein	NA	NA	NA	NA
AWA38160.1\|1326042_1326651_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	2.5e-36	56.7
AWA38161.1\|1326665_1326998_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	3.6e-37	70.0
AWA38162.1\|1326994_1327990_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	3.0e-111	62.9
AWA38163.1\|1327986_1328622_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	6.8e-45	52.5
AWA38164.1\|1331574_1332120_+	DUF4376 domain-containing protein	A0A1S5R1J2	Pseudomonas_phage	4.8e-23	50.0
AWA38165.1\|1332221_1332407_+	hypothetical protein	NA	NA	NA	NA
AWA38166.1\|1332409_1333576_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	4.7e-124	56.7
AWA38167.1\|1333575_1334082_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	9.0e-24	35.1
AWA38168.1\|1334181_1334763_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	7.2e-25	35.7
AWA38169.1\|1334891_1337090_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
AWA38170.1\|1337086_1337470_+	hypothetical protein	A0A2H4JAC8	uncultured_Caudovirales_phage	5.0e-35	52.0
AWA38171.1\|1337462_1337675_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	1.8e-18	64.3
AWA38172.1\|1337684_1338713_+\|tail	phage tail protein	B0ZSH3	Halomonas_phage	8.1e-96	51.3
AWA38173.1\|1338774_1339359_+	hypothetical protein	B5TK65	Pseudomonas_phage	1.9e-81	76.8
AWA38174.1\|1339355_1339535_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	5.2e-19	80.0
AWA38175.1\|1339534_1341031_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	7.5e-260	91.8
AWA38176.1\|1341098_1341446_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	3.8e-58	93.9
AWA38177.1\|1341442_1341739_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	2.8e-41	90.8
AWA38178.1\|1341869_1343888_+\|tail	phage tail protein	B5TK70	Pseudomonas_phage	1.7e-60	53.6
AWA38179.1\|1343874_1345110_+	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	1.2e-170	72.1
AWA38180.1\|1345113_1346157_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	2.2e-157	79.4
AWA38181.1\|1346315_1346825_+\|plate	phage baseplate assembly protein V	B5TK73	Pseudomonas_phage	6.4e-78	86.4
AWA38182.1\|1346824_1347223_+	hypothetical protein	B5TK74	Pseudomonas_phage	4.7e-68	93.9
AWA38183.1\|1347212_1348256_+\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	3.2e-156	80.9
AWA38184.1\|1348243_1348843_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	3.6e-104	90.5
AWA38185.1\|1348854_1349949_+\|tail	phage tail protein	B5TK79	Pseudomonas_phage	1.5e-161	75.8
AWA38186.1\|1349956_1350523_+\|tail	phage tail protein	B5TK80	Pseudomonas_phage	6.2e-74	68.7
AWA38187.1\|1350545_1351472_+	hypothetical protein	B5TK77	Pseudomonas_phage	3.8e-20	72.7
AWA38188.1\|1351471_1351939_+	hypothetical protein	NA	NA	NA	NA
AWA38189.1\|1351980_1352877_+\|tail	phage tail protein	B5TK81	Pseudomonas_phage	2.5e-61	48.6
AWA38190.1\|1352877_1353324_+	hypothetical protein	B5TK82	Pseudomonas_phage	8.8e-23	39.2
AWA38191.1\|1353342_1354503_+	hypothetical protein	B5TK77	Pseudomonas_phage	1.3e-17	57.0
AWA38192.1\|1354502_1354757_+	hypothetical protein	NA	NA	NA	NA
AWA38193.1\|1354790_1355354_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	3.2e-86	81.2
AWA38194.1\|1355335_1355866_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	3.7e-60	75.3
AWA38195.1\|1355934_1356435_+	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	5.0e-75	88.0
AWA38196.1\|1356518_1357577_+	DNA recombination/repair protein RecA	A0A0S2MVG1	Bacillus_phage	4.5e-110	58.9
AWA38197.1\|1357585_1358056_+	recombination regulator RecX	NA	NA	NA	NA
AWA38198.1\|1358124_1359243_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
AWA38199.1\|1359595_1359790_+	hypothetical protein	NA	NA	NA	NA
AWA38200.1\|1359790_1360216_-	hypothetical protein	NA	NA	NA	NA
AWA38201.1\|1360405_1361149_+	DTW domain-containing protein	NA	NA	NA	NA
AWA38202.1\|1361374_1362025_+	DNA-binding response regulator	NA	NA	NA	NA
AWA38203.1\|1362100_1362463_+	diacylglycerol kinase	NA	NA	NA	NA
AWA38204.1\|1362459_1363386_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWA38205.1\|1363530_1364310_+	ferredoxin--NADP reductase	NA	NA	NA	NA
AWA38206.1\|1364420_1365128_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AWA38207.1\|1365317_1366088_-	KR domain-containing protein	NA	NA	NA	NA
AWA38208.1\|1366244_1366712_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	1.2e-38	52.6
AWA38209.1\|1366786_1367497_-	RNA-binding protein	NA	NA	NA	NA
AWA38210.1\|1367701_1368175_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWA38211.1\|1368286_1369624_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AWA38212.1\|1369911_1371813_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	7.4e-79	34.6
AWA38213.1\|1372077_1373373_-	virulence factor family protein	NA	NA	NA	NA
AWA38214.1\|1373372_1376012_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
AWA38215.1\|1376927_1377989_+	DNA polymerase IV	NA	NA	NA	NA
AWA38216.1\|1378037_1378991_-	hypothetical protein	NA	NA	NA	NA
AWA38217.1\|1379008_1380724_-\|tRNA	proline--tRNA ligase	A0A2K9L0T2	Tupanvirus	6.9e-07	25.4

DBSCAN-SWA_2

3834626 : 3840814

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA42484.1\|3834626_3835019_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.3e-51	76.7
AWA40271.1\|3835020_3835377_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.7e-37	65.8
AWA40272.1\|3835376_3835670_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.6e-31	68.7
AWA40273.1\|3835666_3836002_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.6e-45	82.0
AWA40274.1\|3835998_3837000_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.3e-163	85.4
AWA40275.1\|3837091_3838093_+	glutathione-dependent reductase	NA	NA	NA	NA
AWA40276.1\|3838138_3839533_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AWA40277.1\|3839533_3840814_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	53.9

DBSCAN-SWA_3

5647740 : 5702502

Tupanvirus(33.33%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA41855.1\|5647740_5648244_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
AWA41856.1\|5648509_5649397_+	acyltransferase	NA	NA	NA	NA
AWA41857.1\|5649398_5649956_-	hypothetical protein	NA	NA	NA	NA
AWA41858.1\|5650219_5650618_+	hypothetical protein	NA	NA	NA	NA
AWA41859.1\|5650698_5651898_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.5e-11	28.9
AWA41860.1\|5652099_5652957_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AWA41861.1\|5652970_5653603_-	sarcosine oxidase subunit gamma	NA	NA	NA	NA
AWA41862.1\|5653735_5656753_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
AWA41863.1\|5656749_5657079_-	sarcosine oxidase subunit delta family protein	NA	NA	NA	NA
AWA41864.1\|5657093_5658344_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
AWA41865.1\|5658364_5659618_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.7e-100	53.0
AWA41866.1\|5659900_5660611_-	conjugal transfer protein TraX	NA	NA	NA	NA
AWA41867.1\|5660738_5661779_+	low specificity L-threonine aldolase	NA	NA	NA	NA
AWA41868.1\|5662108_5662642_+\|transposase	transposase	NA	NA	NA	NA
AWA41869.1\|5662890_5663715_+	short chain dehydrogenase	NA	NA	NA	NA
AWA41870.1\|5663805_5664291_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AWA42516.1\|5664287_5665736_+	hypothetical protein	A0A2H4JEI9	uncultured_Caudovirales_phage	5.1e-72	49.8
AWA41871.1\|5665732_5666119_+	hypothetical protein	NA	NA	NA	NA
AWA41872.1\|5666186_5667287_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
AWA42517.1\|5667328_5667523_+	protein GbcA	NA	NA	NA	NA
AWA41873.1\|5667568_5668861_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
AWA41874.1\|5669003_5670248_-	metallophosphoesterase	NA	NA	NA	NA
AWA41875.1\|5670273_5672142_-	hypothetical protein	NA	NA	NA	NA
AWA41876.1\|5672290_5675743_-\|holin	choline dehydrogenase	NA	NA	NA	NA
AWA41877.1\|5676737_5677508_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AWA41878.1\|5677517_5678738_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
AWA41879.1\|5678737_5680687_-	DUF3483 domain-containing protein	NA	NA	NA	NA
AWA41880.1\|5680853_5682914_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
AWA41881.1\|5682929_5683460_-	hydrocarbon binding protein	NA	NA	NA	NA
AWA41882.1\|5683540_5684515_-	peptidase M19	NA	NA	NA	NA
AWA42518.1\|5684749_5685151_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AWA41883.1\|5685196_5686162_-	tyrosinase	NA	NA	NA	NA
AWA41884.1\|5686423_5686840_+	DUF3010 domain-containing protein	NA	NA	NA	NA
AWA41885.1\|5686840_5688013_-	hypothetical protein	NA	NA	NA	NA
AWA41886.1\|5688081_5689026_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AWA41887.1\|5689219_5690164_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AWA41888.1\|5690239_5691127_+	NADPH:quinone reductase	NA	NA	NA	NA
AWA41889.1\|5691267_5692233_+	L-carnitine dehydrogenase	NA	NA	NA	NA
AWA41890.1\|5692288_5692765_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
AWA41891.1\|5692789_5693953_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
AWA41892.1\|5694904_5696188_-	hypothetical protein	NA	NA	NA	NA
AWA41893.1\|5696657_5696921_+	hypothetical protein	NA	NA	NA	NA
AWA41894.1\|5697046_5698150_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AWA41895.1\|5698817_5700194_-	L-serine ammonia-lyase	NA	NA	NA	NA
AWA41896.1\|5700628_5701579_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AWA41897.1\|5701656_5702502_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage