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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP028909 Campylobacter jejuni strain 12567 chromosome, complete genome 1 crisprs DEDDh,WYL,cas2,cas1,cas9 0 4 2 0

Results visualization

1. CP028909
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028909_2 1494041-1494276 orTypeII NA
3 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP028909_2 2.1|1494078|29|CP028909|CRT 1494078-1494106 29 MN530981 Campylobacter phage DA10, complete genome 5260-5288 0 1.0
CP028909_2 2.4|1494079|30|CP028909|PILER-CR 1494079-1494108 30 MN530981 Campylobacter phage DA10, complete genome 5259-5288 0 1.0
CP028909_2 2.3|1494210|30|CP028909|CRT 1494210-1494239 30 MN530981 Campylobacter phage DA10, complete genome 17957-17986 1 0.967
CP028909_2 2.6|1494211|31|CP028909|PILER-CR 1494211-1494241 31 MN530981 Campylobacter phage DA10, complete genome 17956-17986 1 0.968
CP028909_2 2.3|1494210|30|CP028909|CRT 1494210-1494239 30 NZ_LR214939 Mycoplasma salivarium strain NCTC10113 plasmid 2 615549-615578 6 0.8
CP028909_2 2.1|1494078|29|CP028909|CRT 1494078-1494106 29 MG676225 Aeromonas phage AhSzw-1, complete genome 109812-109840 7 0.759
CP028909_2 2.3|1494210|30|CP028909|CRT 1494210-1494239 30 HQ632825 Prochlorococcus phage P-SSM5 genomic sequence 60253-60282 7 0.767
CP028909_2 2.3|1494210|30|CP028909|CRT 1494210-1494239 30 AY939844 Prochlorococcus phage P-SSM2, complete genome 26700-26729 7 0.767
CP028909_2 2.6|1494211|31|CP028909|PILER-CR 1494211-1494241 31 NZ_LR214939 Mycoplasma salivarium strain NCTC10113 plasmid 2 615548-615578 7 0.774
CP028909_2 2.4|1494079|30|CP028909|PILER-CR 1494079-1494108 30 MG676225 Aeromonas phage AhSzw-1, complete genome 109812-109841 8 0.733
CP028909_2 2.3|1494210|30|CP028909|CRT 1494210-1494239 30 MN694568 Marine virus AFVG_250M879, complete genome 48298-48327 9 0.7

1. spacer 2.1|1494078|29|CP028909|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatggcagtttttaaaagagcttggcggt	CRISPR spacer
tatggcagtttttaaaagagcttggcggt	Protospacer
*****************************

2. spacer 2.4|1494079|30|CP028909|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
tatggcagtttttaaaagagcttggcggtt	Protospacer
******************************

3. spacer 2.3|1494210|30|CP028909|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

taagtgatatgttattaagatttaaaagtg	CRISPR spacer
taagcgatatgttattaagatttaaaagtg	Protospacer
****.*************************

4. spacer 2.6|1494211|31|CP028909|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

taagtgatatgttattaagatttaaaagtga	CRISPR spacer
taagcgatatgttattaagatttaaaagtga	Protospacer
****.**************************

5. spacer 2.3|1494210|30|CP028909|CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 6, identity: 0.8

taagtgatatgttattaagatttaaaagtg	CRISPR spacer
tatatgatatgttattaacatataaaagct	Protospacer
** .************** ** ******. 

6. spacer 2.1|1494078|29|CP028909|CRT matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 7, identity: 0.759

tatggcagtttttaaaagagcttggcggt	CRISPR spacer
gctgccagtttttaaaagagctttacaat	Protospacer
  ** ****************** .*..*

7. spacer 2.3|1494210|30|CP028909|CRT matches to HQ632825 (Prochlorococcus phage P-SSM5 genomic sequence) position: , mismatch: 7, identity: 0.767

taagtgatatgttattaagatttaaaagtg-----	CRISPR spacer
taagagatatgttattaagatc-----gtgactgt	Protospacer
**** ****************.     ***     

8. spacer 2.3|1494210|30|CP028909|CRT matches to AY939844 (Prochlorococcus phage P-SSM2, complete genome) position: , mismatch: 7, identity: 0.767

taagtgatatgttattaagatttaaaagtg-----	CRISPR spacer
taagagatatgttattaagatc-----gtgactgt	Protospacer
**** ****************.     ***     

9. spacer 2.6|1494211|31|CP028909|PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 7, identity: 0.774

taagtgatatgttattaagatttaaaagtga	CRISPR spacer
tatatgatatgttattaacatataaaagctt	Protospacer
** .************** ** ******.  

10. spacer 2.4|1494079|30|CP028909|PILER-CR matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 8, identity: 0.733

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
gctgccagtttttaaaagagctttacaatg	Protospacer
  ** ****************** .*..* 

11. spacer 2.3|1494210|30|CP028909|CRT matches to MN694568 (Marine virus AFVG_250M879, complete genome) position: , mismatch: 9, identity: 0.7

taagtgatatgttattaagatttaaaagtg	CRISPR spacer
aagaacatatgtcattaagatttaaaaaaa	Protospacer
 *..  ******.**************. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1217023 : 1253786 53 Campylobacter_phage(100.0%) portal,terminase,integrase,capsid attL 1214687:1214704|attR 1230862:1230879
DBSCAN-SWA_2 1396973 : 1403609 8 Tupanvirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage