CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028911	Campylobacter jejuni strain NCTC 12661 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas2,cas1,cas9,csa3	1	7	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028911_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028911_1

1430857-1431289

TypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
AACCTTGAAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	PILER-CR

6 spacers

cas2,cas1,cas9

The CRISPR arrays of CP028911_1

>merge|CP028911|1|1430857-1431289|CRISPRCasFinder,CRT,PILER-CR
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCCTTCAAGTCGTGCAATTTTAATACACTGGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGTATCAGCTATAGATCTATCAGAATTTACAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCCTTCAAGTCGTGCAATTTTAATACACTGGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAATTTTAATACACTGGGGAAACGTTGATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCTTGGTGGTATTATGGCAAATTCTGTTAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATTTATAAATTTGGATATGAAGCTTTAAGTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>CP028911|1|1|1430857-1431288|CRISPRCasFinder
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCTTCAAGTCGTGCAATTTTAATACACTGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTATCAGCTATAGATCTATCAGAATTTACA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCTTCAAGTCGTGCAATTTTAATACACTGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATTTTAATACACTGGGGAAACGTTGATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTTGGTGGTATTATGGCAAATTCTGTTAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATTTATAAATTTGGATATGAAGCTTTAAGT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>CP028911|1|1|1430857-1431288|CRT
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCTTCAAGTCGTGCAATTTTAATACACTGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GTATCAGCTATAGATCTATCAGAATTTACA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCTTCAAGTCGTGCAATTTTAATACACTGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AATTTTAATACACTGGGGAAACGTTGATAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTTGGTGGTATTATGGCAAATTCTGTTAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATTTATAAATTTGGATATGAAGCTTTAAGT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>CP028911|1|1|1431110-1431289|PILER-CR
AACGTTGATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATC	TTGGTGGTATTATGGCAAATTCTGTT
AATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATTTATAAA	TTTGGATATGAAGCTTTA
AGTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
CP028911.1\|AWB37801.1\|1421434_1422076_-\|formate-dehydrogenase-N,-beta-subunit,-iron-sulfur-cluster-subunit	unknown	unknown	gnl\|CDD\|319893
CP028911.1\|AWB37813.1\|1435903_1437358_+\|anaerobic-C4-dicarboxylate-transporter,-DcuC-family	unknown	unknown	gnl\|CDD\|225611
CP028911.1\|AWB37818.1\|1440482_1441520_-\|ATPase,-AAA-family-(DUF4143-domain)	unknown	unknown	gnl\|CDD\|224292
CP028911.1\|AWB37800.1\|1420505_1421438_-\|formate-dehydrogenase-N,-cytochrome-b-556-subunit	unknown	unknown	gnl\|CDD\|130645
CP028911.1\|AWB37809.1\|1429548_1430739_+\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|223380
CP028911.1\|AWB37819.1\|1441584_1442034_-\|DNA-binding-ferritin-like-protein	unknown	unknown	gnl\|CDD\|223854
CP028911.1\|AWB37811.1\|1431856_1432747_-\|CRISPR/Cas-system-associated-endonuclease-Cas1,-type-II-C	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP028911.1\|AWB37806.1\|1427333_1428875_+\|copper-oxidase	unknown	unknown	gnl\|CDD\|225043
CP028911.1\|AWB37804.1\|1425042_1425744_-\|formate-dehydrogenase-associated-chaperone	unknown	unknown	gnl\|CDD\|225916
CP028911.1\|AWB37805.1\|1426059_1427208_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
CP028911.1\|AWB37816.1\|1439030_1439780_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
CP028911.1\|AWB37803.1\|1424876_1425068_-\|putative-formate-dehydrogenase-associated-protein	unknown	unknown	gnl\|CDD\|239247
CP028911.1\|AWB37810.1\|1431432_1431864_-\|CRISPR/Cas-system-associated-endoribonuclease-Cas2,-type-II-C	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP028911.1\|AWB37815.1\|1438428_1439034_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP028911.1\|AWB37802.1\|1422072_1424877_-\|formate-dehydrogenase-N,-alpha-subunit,-selenocysteine-containing	unknown	unknown	gnl\|CDD\|239153
CP028911.1\|AWB37812.1\|1432733_1435697_-\|CRISPR/Cas-system-associated-RNA-guided-endonuclease-Cas9,-type-II-C	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
CP028911.1\|AWB37814.1\|1437378_1438368_-\|phosphoribosylformylglycinamide-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
CP028911.1\|AWB37807.1\|1428876_1429098_+\|molybdopterin-synthase,-small-subunit	unknown	unknown	gnl\|CDD\|224888
CP028911.1\|AWB37808.1\|1429098_1429545_+\|molybdopterin-synthase,-large-subunit	unknown	unknown	gnl\|CDD\|223391
CP028911.1\|AWB37817.1\|1439754_1440486_+\|putative-FlgJ-related-protein-(Bax-domain)	unknown	unknown	gnl\|CDD\|225539

Protein	Function_ID	Function_description	E-value
CP028911.1\|AWB37801.1\|1421434_1422076_-\|formate-dehydrogenase-N,-beta-subunit,-iron-sulfur-cluster-subunit	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
CP028911.1\|AWB37813.1\|1435903_1437358_+\|anaerobic-C4-dicarboxylate-transporter,-DcuC-family	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	7.97176e-72
CP028911.1\|AWB37818.1\|1440482_1441520_-\|ATPase,-AAA-family-(DUF4143-domain)	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.59631e-33
CP028911.1\|AWB37800.1\|1420505_1421438_-\|formate-dehydrogenase-N,-cytochrome-b-556-subunit	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.50857e-86
CP028911.1\|AWB37809.1\|1429548_1430739_+\|molybdopterin-molybdenumtransferase	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.65341e-143
CP028911.1\|AWB37819.1\|1441584_1442034_-\|DNA-binding-ferritin-like-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.17285e-51
CP028911.1\|AWB37811.1\|1431856_1432747_-\|CRISPR/Cas-system-associated-endonuclease-Cas1,-type-II-C	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	5.24164e-120
CP028911.1\|AWB37806.1\|1427333_1428875_+\|copper-oxidase	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.16915e-120
CP028911.1\|AWB37804.1\|1425042_1425744_-\|formate-dehydrogenase-associated-chaperone	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000549526
CP028911.1\|AWB37805.1\|1426059_1427208_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
CP028911.1\|AWB37816.1\|1439030_1439780_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.86247e-92
CP028911.1\|AWB37803.1\|1424876_1425068_-\|putative-formate-dehydrogenase-associated-protein	gnl\|CDD\|239247	cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.	0.0054266
CP028911.1\|AWB37810.1\|1431432_1431864_-\|CRISPR/Cas-system-associated-endoribonuclease-Cas2,-type-II-C	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.38481e-58
CP028911.1\|AWB37815.1\|1438428_1439034_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	4.17691e-71
CP028911.1\|AWB37802.1\|1422072_1424877_-\|formate-dehydrogenase-N,-alpha-subunit,-selenocysteine-containing	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
CP028911.1\|AWB37812.1\|1432733_1435697_-\|CRISPR/Cas-system-associated-RNA-guided-endonuclease-Cas9,-type-II-C	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
CP028911.1\|AWB37814.1\|1437378_1438368_-\|phosphoribosylformylglycinamide-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP028911.1\|AWB37807.1\|1428876_1429098_+\|molybdopterin-synthase,-small-subunit	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
CP028911.1\|AWB37808.1\|1429098_1429545_+\|molybdopterin-synthase,-large-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	3.65018e-42
CP028911.1\|AWB37817.1\|1439754_1440486_+\|putative-FlgJ-related-protein-(Bax-domain)	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	5.68699e-101

>CP028911.1|AWB37809.1|1429548_1430739_+|molybdopterin-molybdenumtransferase
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPHFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>CP028911.1|AWB37808.1|1429098_1429545_+|molybdopterin-synthase,-large-subunit
MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNKFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>CP028911.1|AWB37807.1|1428876_1429098_+|molybdopterin-synthase,-small-subunit
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>CP028911.1|AWB37806.1|1427333_1428875_+|copper-oxidase
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFKLESSYYDRDKMMVKEEPNTLFLANINLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINDKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>CP028911.1|AWB37805.1|1426059_1427208_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASIGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIIFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN
>CP028911.1|AWB37804.1|1425042_1425744_-|formate-dehydrogenase-associated-chaperone
MDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>CP028911.1|AWB37803.1|1424876_1425068_-|putative-formate-dehydrogenase-associated-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDKERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>CP028911.1|AWB37802.1|1422072_1424877_-|formate-dehydrogenase-N,-alpha-subunit,-selenocysteine-containing
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAYYVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>CP028911.1|AWB37801.1|1421434_1422076_-|formate-dehydrogenase-N,-beta-subunit,-iron-sulfur-cluster-subunit
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>CP028911.1|AWB37800.1|1420505_1421438_-|formate-dehydrogenase-N,-cytochrome-b-556-subunit
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVEI
>CP028911.1|AWB37810.1|1431432_1431864_-|CRISPR/Cas-system-associated-endoribonuclease-Cas2,-type-II-C
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGRIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>CP028911.1|AWB37811.1|1431856_1432747_-|CRISPR/Cas-system-associated-endonuclease-Cas1,-type-II-C
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVVAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNAFALCDDLIEVFRASVDDCVLKLKGESEFLNKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>CP028911.1|AWB37812.1|1432733_1435697_-|CRISPR/Cas-system-associated-RNA-guided-endonuclease-Cas9,-type-II-C
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLNKQDFARVILHIAKRRGYDDIKNSDDEEKGKILKAIKQNEEKLVNYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCIAQSFLKDELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALDEHSLSQDDLNEIAKDITLIKDETKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKILNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMPEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLTKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKNELR
>CP028911.1|AWB37813.1|1435903_1437358_+|anaerobic-C4-dicarboxylate-transporter,-DcuC-family
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIELKIQK
>CP028911.1|AWB37814.1|1437378_1438368_-|phosphoribosylformylglycinamide-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>CP028911.1|AWB37815.1|1438428_1439034_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLTKENKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>CP028911.1|AWB37816.1|1439030_1439780_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQDKVEASLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFS
>CP028911.1|AWB37817.1|1439754_1440486_+|putative-FlgJ-related-protein-(Bax-domain)
MKPIIIFLSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRISNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>CP028911.1|AWB37818.1|1440482_1441520_-|ATPase,-AAA-family-(DUF4143-domain)
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>CP028911.1|AWB37819.1|1441584_1442034_-|DNA-binding-ferritin-like-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGTCKM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP028911_1	1.8\|1431232\|18\|CP028911\|PILER-CR	1431232-1431249	18	CP028911.1	1414100-1414117	2	0.889

1. spacer 1.8|1431232|18|CP028911|PILER-CR matches to position: 1414100-1414117, mismatch: 2, identity: 0.889

tttataaatttggatatg	CRISPR spacer
tttatcaatctggatatg	Protospacer
***** ***.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028911_1	1.1\|1430893\|30\|CP028911\|CRISPRCasFinder,CRT	1430893-1430922	30	KF751797	Campylobacter phage CJIE4-5, complete genome	13919-13948	0	1.0
CP028911_1	1.1\|1430893\|30\|CP028911\|CRISPRCasFinder,CRT	1430893-1430922	30	KF751793	Campylobacter phage CJIE4-1, complete genome	14946-14975	0	1.0
CP028911_1	1.2\|1430959\|30\|CP028911\|CRISPRCasFinder,CRT	1430959-1430988	30	NZ_CP038864	Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence	1328-1357	0	1.0
CP028911_1	1.3\|1431025\|30\|CP028911\|CRISPRCasFinder,CRT	1431025-1431054	30	KF751797	Campylobacter phage CJIE4-5, complete genome	13919-13948	0	1.0
CP028911_1	1.3\|1431025\|30\|CP028911\|CRISPRCasFinder,CRT	1431025-1431054	30	KF751793	Campylobacter phage CJIE4-1, complete genome	14946-14975	0	1.0
CP028911_1	1.1\|1430893\|30\|CP028911\|CRISPRCasFinder,CRT	1430893-1430922	30	MN530981	Campylobacter phage DA10, complete genome	33579-33608	1	0.967
CP028911_1	1.1\|1430893\|30\|CP028911\|CRISPRCasFinder,CRT	1430893-1430922	30	KF751794	Campylobacter phage CJIE4-2, complete genome	13669-13698	1	0.967
CP028911_1	1.1\|1430893\|30\|CP028911\|CRISPRCasFinder,CRT	1430893-1430922	30	KF751795	Campylobacter phage CJIE4-3, complete genome	11997-12026	1	0.967
CP028911_1	1.1\|1430893\|30\|CP028911\|CRISPRCasFinder,CRT	1430893-1430922	30	KF751796	Campylobacter phage CJIE4-4, complete genome	12035-12064	1	0.967
CP028911_1	1.3\|1431025\|30\|CP028911\|CRISPRCasFinder,CRT	1431025-1431054	30	MN530981	Campylobacter phage DA10, complete genome	33579-33608	1	0.967
CP028911_1	1.3\|1431025\|30\|CP028911\|CRISPRCasFinder,CRT	1431025-1431054	30	KF751794	Campylobacter phage CJIE4-2, complete genome	13669-13698	1	0.967
CP028911_1	1.3\|1431025\|30\|CP028911\|CRISPRCasFinder,CRT	1431025-1431054	30	KF751795	Campylobacter phage CJIE4-3, complete genome	11997-12026	1	0.967
CP028911_1	1.3\|1431025\|30\|CP028911\|CRISPRCasFinder,CRT	1431025-1431054	30	KF751796	Campylobacter phage CJIE4-4, complete genome	12035-12064	1	0.967
CP028911_1	1.4\|1431091\|30\|CP028911\|CRISPRCasFinder,CRT	1431091-1431120	30	KF751794	Campylobacter phage CJIE4-2, complete genome	13655-13684	2	0.933
CP028911_1	1.4\|1431091\|30\|CP028911\|CRISPRCasFinder,CRT	1431091-1431120	30	KF751795	Campylobacter phage CJIE4-3, complete genome	11983-12012	2	0.933
CP028911_1	1.4\|1431091\|30\|CP028911\|CRISPRCasFinder,CRT	1431091-1431120	30	KF751796	Campylobacter phage CJIE4-4, complete genome	12021-12050	2	0.933
CP028911_1	1.5\|1431157\|30\|CP028911\|CRISPRCasFinder,CRT	1431157-1431186	30	MN530981	Campylobacter phage DA10, complete genome	34843-34872	2	0.933
CP028911_1	1.6\|1431223\|30\|CP028911\|CRISPRCasFinder,CRT	1431223-1431252	30	MN530981	Campylobacter phage DA10, complete genome	14249-14278	2	0.933
CP028911_1	1.7\|1431158\|26\|CP028911\|PILER-CR	1431158-1431183	26	MN530981	Campylobacter phage DA10, complete genome	34846-34871	2	0.923
CP028911_1	1.5\|1431157\|30\|CP028911\|CRISPRCasFinder,CRT	1431157-1431186	30	NZ_CP022484	Enterococcus faecalis ARO1/DG plasmid pARO1.1, complete sequence	32051-32080	7	0.767
CP028911_1	1.5\|1431157\|30\|CP028911\|CRISPRCasFinder,CRT	1431157-1431186	30	NZ_CP036248	Enterococcus faecalis R712 plasmid pR712_02, complete sequence	52289-52318	7	0.767
CP028911_1	1.5\|1431157\|30\|CP028911\|CRISPRCasFinder,CRT	1431157-1431186	30	NZ_CP028721	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-1, complete sequence	46107-46136	7	0.767
CP028911_1	1.5\|1431157\|30\|CP028911\|CRISPRCasFinder,CRT	1431157-1431186	30	NZ_CP028286	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence	24317-24346	7	0.767
CP028911_1	1.5\|1431157\|30\|CP028911\|CRISPRCasFinder,CRT	1431157-1431186	30	NZ_CP028286	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence	96873-96902	7	0.767
CP028911_1	1.5\|1431157\|30\|CP028911\|CRISPRCasFinder,CRT	1431157-1431186	30	NZ_CP042217	Enterococcus faecalis strain L8 plasmid pL8, complete sequence	45343-45372	7	0.767
CP028911_1	1.5\|1431157\|30\|CP028911\|CRISPRCasFinder,CRT	1431157-1431186	30	NZ_MK140641	Enterococcus faecalis strain E035 plasmid pE035, complete sequence	56665-56694	7	0.767
CP028911_1	1.6\|1431223\|30\|CP028911\|CRISPRCasFinder,CRT	1431223-1431252	30	MH572526	Microviridae sp. isolate SD_HF_66, complete genome	3109-3138	8	0.733
CP028911_1	1.6\|1431223\|30\|CP028911\|CRISPRCasFinder,CRT	1431223-1431252	30	NZ_LN890332	Leuconostoc gelidum subsp. gasicomitatum KG16-1 isolate LEKG1 plasmid II, complete sequence	5684-5713	8	0.733
CP028911_1	1.1\|1430893\|30\|CP028911\|CRISPRCasFinder,CRT	1430893-1430922	30	MN693024	Marine virus AFVG_117M49, complete genome	7901-7930	9	0.7
CP028911_1	1.3\|1431025\|30\|CP028911\|CRISPRCasFinder,CRT	1431025-1431054	30	MN693024	Marine virus AFVG_117M49, complete genome	7901-7930	9	0.7

1. spacer 1.1|1430893|30|CP028911|CRISPRCasFinder,CRT matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 0, identity: 1.0

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
******************************

2. spacer 1.1|1430893|30|CP028911|CRISPRCasFinder,CRT matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 0, identity: 1.0

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
******************************

3. spacer 1.2|1430959|30|CP028911|CRISPRCasFinder,CRT matches to NZ_CP038864 (Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

gtatcagctatagatctatcagaatttaca	CRISPR spacer
gtatcagctatagatctatcagaatttaca	Protospacer
******************************

4. spacer 1.3|1431025|30|CP028911|CRISPRCasFinder,CRT matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 0, identity: 1.0

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
******************************

5. spacer 1.3|1431025|30|CP028911|CRISPRCasFinder,CRT matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 0, identity: 1.0

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgtgcaattttaatacactgg	Protospacer
******************************

6. spacer 1.1|1430893|30|CP028911|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

7. spacer 1.1|1430893|30|CP028911|CRISPRCasFinder,CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

8. spacer 1.1|1430893|30|CP028911|CRISPRCasFinder,CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

9. spacer 1.1|1430893|30|CP028911|CRISPRCasFinder,CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

10. spacer 1.3|1431025|30|CP028911|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

11. spacer 1.3|1431025|30|CP028911|CRISPRCasFinder,CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

12. spacer 1.3|1431025|30|CP028911|CRISPRCasFinder,CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

13. spacer 1.3|1431025|30|CP028911|CRISPRCasFinder,CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 1, identity: 0.967

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccatcaagtcgtgcaattttaatacactgg	Protospacer
** ***************************

14. spacer 1.4|1431091|30|CP028911|CRISPRCasFinder,CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 2, identity: 0.933

aattttaatacactggggaaacgttgataa	CRISPR spacer
aattttaatacactggggaaacactgataa	Protospacer
**********************..******

15. spacer 1.4|1431091|30|CP028911|CRISPRCasFinder,CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 2, identity: 0.933

aattttaatacactggggaaacgttgataa	CRISPR spacer
aattttaatacactggggaaacactgataa	Protospacer
**********************..******

16. spacer 1.4|1431091|30|CP028911|CRISPRCasFinder,CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 2, identity: 0.933

aattttaatacactggggaaacgttgataa	CRISPR spacer
aattttaatacactggggaaacactgataa	Protospacer
**********************..******

17. spacer 1.5|1431157|30|CP028911|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

cttggtggtattatggcaaattctgttaat	CRISPR spacer
cttggcggaattatggcaaattctgttaat	Protospacer
*****.** *********************

18. spacer 1.6|1431223|30|CP028911|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

atttataaatttggatatgaagctttaagt	CRISPR spacer
atttataaatttggttatgaagctttaagc	Protospacer
************** **************.

19. spacer 1.7|1431158|26|CP028911|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.923

ttggtggtattatggcaaattctgtt	CRISPR spacer
ttggcggaattatggcaaattctgtt	Protospacer
****.** ******************

20. spacer 1.5|1431157|30|CP028911|CRISPRCasFinder,CRT matches to NZ_CP022484 (Enterococcus faecalis ARO1/DG plasmid pARO1.1, complete sequence) position: , mismatch: 7, identity: 0.767

cttggtggtattatggcaaattctgttaat	CRISPR spacer
attttttctattatggaaaattctgttaaa	Protospacer
 **  *  ******** ************

21. spacer 1.5|1431157|30|CP028911|CRISPRCasFinder,CRT matches to NZ_CP036248 (Enterococcus faecalis R712 plasmid pR712_02, complete sequence) position: , mismatch: 7, identity: 0.767

cttggtggtattatggcaaattctgttaat	CRISPR spacer
attttttctattatggaaaattctgttaaa	Protospacer
 **  *  ******** ************

22. spacer 1.5|1431157|30|CP028911|CRISPRCasFinder,CRT matches to NZ_CP028721 (Enterococcus faecalis strain CVM N48037F plasmid pN48037F-1, complete sequence) position: , mismatch: 7, identity: 0.767

cttggtggtattatggcaaattctgttaat	CRISPR spacer
attttttctattatggaaaattctgttaaa	Protospacer
 **  *  ******** ************

23. spacer 1.5|1431157|30|CP028911|CRISPRCasFinder,CRT matches to NZ_CP028286 (Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cttggtggtattatggcaaattctgttaat	CRISPR spacer
attttttctattatggaaaattctgttaaa	Protospacer
 **  *  ******** ************

24. spacer 1.5|1431157|30|CP028911|CRISPRCasFinder,CRT matches to NZ_CP028286 (Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cttggtggtattatggcaaattctgttaat	CRISPR spacer
attttttctattatggaaaattctgttaaa	Protospacer
 **  *  ******** ************

25. spacer 1.5|1431157|30|CP028911|CRISPRCasFinder,CRT matches to NZ_CP042217 (Enterococcus faecalis strain L8 plasmid pL8, complete sequence) position: , mismatch: 7, identity: 0.767

cttggtggtattatggcaaattctgttaat	CRISPR spacer
attttttctattatggaaaattctgttaaa	Protospacer
 **  *  ******** ************

26. spacer 1.5|1431157|30|CP028911|CRISPRCasFinder,CRT matches to NZ_MK140641 (Enterococcus faecalis strain E035 plasmid pE035, complete sequence) position: , mismatch: 7, identity: 0.767

cttggtggtattatggcaaattctgttaat	CRISPR spacer
attttttctattatggaaaattctgttaaa	Protospacer
 **  *  ******** ************

27. spacer 1.6|1431223|30|CP028911|CRISPRCasFinder,CRT matches to MH572526 (Microviridae sp. isolate SD_HF_66, complete genome) position: , mismatch: 8, identity: 0.733

atttataaatttggatatgaagctttaagt	CRISPR spacer
attgataaaattggatatgaagcgaaagaa	Protospacer
*** ***** *************   *..

28. spacer 1.6|1431223|30|CP028911|CRISPRCasFinder,CRT matches to NZ_LN890332 (Leuconostoc gelidum subsp. gasicomitatum KG16-1 isolate LEKG1 plasmid II, complete sequence) position: , mismatch: 8, identity: 0.733

atttataaatttggatatgaagctttaagt	CRISPR spacer
aaagataaagttggatatgaagcttcattc	Protospacer
*   ***** ***************.*  .

29. spacer 1.1|1430893|30|CP028911|CRISPRCasFinder,CRT matches to MN693024 (Marine virus AFVG_117M49, complete genome) position: , mismatch: 9, identity: 0.7

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgagcaattttaactttgcct	Protospacer
*********** **********. .  .

30. spacer 1.3|1431025|30|CP028911|CRISPRCasFinder,CRT matches to MN693024 (Marine virus AFVG_117M49, complete genome) position: , mismatch: 9, identity: 0.7

ccttcaagtcgtgcaattttaatacactgg	CRISPR spacer
ccttcaagtcgagcaattttaactttgcct	Protospacer
*********** **********. .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1342272 : 1348342

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB37726.1\|1342272_1342947_-	sugar-phosphate nucleotidyltransferase	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	1.3e-06	25.9
AWB37727.1\|1342934_1343540_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	3.7e-16	35.0
AWB37728.1\|1343527_1344547_-	sugar kinase	A0A222YW25	Synechococcus_phage	3.5e-59	40.5
AWB37729.1\|1344543_1345575_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.7e-147	73.9
AWB37730.1\|1345571_1346735_-	aminotransferase, DegT/DnrJ/EryC1/StrS family	A0A218MN59	uncultured_virus	3.3e-45	29.9
AWB37731.1\|1346735_1347782_-	GDP-fucose synthetase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.9e-68	41.9
AWB37732.1\|1347781_1348342_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	5.0e-15	31.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage