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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP028922 Paenibacillus sp. CAA11 chromosome, complete genome 5 crisprs RT,csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cmr6gr7,DinG 0 8 5 0

Results visualization

1. CP028922
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028922_1 492449-493739 TypeI I-C
19 spacers
cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028922_2 502300-504343 TypeI I-C:NA
30 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028922_3 1014906-1015032 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028922_4 2000500-2002468 TypeIII-C?,TypeIII-B I-C
29 spacers
cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028922_5 2792752-2792839 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP028922_4 4.14|2001400|33|CP028922|PILER-CR,CRISPRCasFinder,CRT 2001400-2001432 33 MF063068 Pseudomonas phage Noxifer, complete genome 16493-16525 7 0.788
CP028922_1 1.2|492547|33|CP028922|CRISPRCasFinder,CRT 492547-492579 33 MG770379 Klebsiella virus vB_KpnM_KpS110, complete genome 132714-132746 8 0.758
CP028922_1 1.2|492547|33|CP028922|CRISPRCasFinder,CRT 492547-492579 33 MG428991 Klebsiella phage May, complete genome 76596-76628 8 0.758
CP028922_1 1.17|493543|34|CP028922|CRISPRCasFinder,CRT,PILER-CR 493543-493576 34 NZ_CP048772 Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence 304-337 8 0.765
CP028922_4 4.6|2000865|36|CP028922|PILER-CR,CRISPRCasFinder,CRT 2000865-2000900 36 NZ_CP015356 Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence 8374-8409 8 0.778
CP028922_1 1.15|493411|33|CP028922|CRISPRCasFinder,CRT,PILER-CR 493411-493443 33 NC_003276 Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence 26148-26180 9 0.727
CP028922_1 1.17|493543|34|CP028922|CRISPRCasFinder,CRT,PILER-CR 493543-493576 34 MH622943 Myoviridae sp. isolate ctbc_4, complete genome 170392-170425 9 0.735
CP028922_2 2.16|503347|34|CP028922|CRISPRCasFinder,CRT 503347-503380 34 NZ_CP038636 Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence 175502-175535 9 0.735
CP028922_2 2.16|503347|34|CP028922|CRISPRCasFinder,CRT 503347-503380 34 NZ_CP038636 Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence 356706-356739 9 0.735
CP028922_1 1.17|493543|34|CP028922|CRISPRCasFinder,CRT,PILER-CR 493543-493576 34 NZ_CP020744 Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence 280204-280237 10 0.706
CP028922_2 2.7|502739|33|CP028922|CRISPRCasFinder,CRT 502739-502771 33 MN856012 Myoviridae sp. isolate 96, complete genome 623-655 10 0.697
CP028922_4 4.12|2001265|33|CP028922|PILER-CR,CRISPRCasFinder,CRT 2001265-2001297 33 NZ_CP045294 Paenibacillus guangzhouensis strain KCTC 33171 plasmid unnamed1, complete sequence 2765-2797 10 0.697

1. spacer 4.14|2001400|33|CP028922|PILER-CR,CRISPRCasFinder,CRT matches to MF063068 (Pseudomonas phage Noxifer, complete genome) position: , mismatch: 7, identity: 0.788

gtcaaacgcgcccaactcgaagcacttaccgca	CRISPR spacer
atcaaacgcgcccaaatcgaagcacctctccct	Protospacer
.************** *********.* .* * 

2. spacer 1.2|492547|33|CP028922|CRISPRCasFinder,CRT matches to MG770379 (Klebsiella virus vB_KpnM_KpS110, complete genome) position: , mismatch: 8, identity: 0.758

aacaactgataagttaaaagataaccaaaatca	CRISPR spacer
gtcgtcttttaagttaaaatataaccaaattca	Protospacer
. *. **  ********** ********* ***

3. spacer 1.2|492547|33|CP028922|CRISPRCasFinder,CRT matches to MG428991 (Klebsiella phage May, complete genome) position: , mismatch: 8, identity: 0.758

aacaactgataagttaaaagataaccaaaatca	CRISPR spacer
gtcgtcttttaagttaaaatataaccaaattca	Protospacer
. *. **  ********** ********* ***

4. spacer 1.17|493543|34|CP028922|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 8, identity: 0.765

tgtgaaagtatattatgaggatattttagttggt	CRISPR spacer
tttaaaaggatattatgacgatattttaatctat	Protospacer
* *.**** ********* *********.*. .*

5. spacer 4.6|2000865|36|CP028922|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015356 (Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence) position: , mismatch: 8, identity: 0.778

cgtacatgcgcttatcttccaactgtccaagatcct	CRISPR spacer
cgtatcgtttcttatcttccaattgtccaaaatcct	Protospacer
****.   . ************.*******.*****

6. spacer 1.15|493411|33|CP028922|CRISPRCasFinder,CRT,PILER-CR matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 9, identity: 0.727

ggtactacaaagcgattgtcggtaaccttacca	CRISPR spacer
tctactccaaagcgattgtctgtaactcttcac	Protospacer
  **** ************* *****..* *  

7. spacer 1.17|493543|34|CP028922|CRISPRCasFinder,CRT,PILER-CR matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 9, identity: 0.735

tgtgaaagtatattatgaggatattttagttggt	CRISPR spacer
tatttttccatattattaggatattttatttggt	Protospacer
*.*     .******* *********** *****

8. spacer 2.16|503347|34|CP028922|CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

attga-aaggttctccagcagccgcccgatccaat	CRISPR spacer
-tcgatcaggttctccagcacccgctcgatcatgc	Protospacer
 *.**  ************* ****.*****  ..

9. spacer 2.16|503347|34|CP028922|CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

attga-aaggttctccagcagccgcccgatccaat	CRISPR spacer
-tcgatcaggttctccagcacccgctcgatcatgc	Protospacer
 *.**  ************* ****.*****  ..

10. spacer 1.17|493543|34|CP028922|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

tgtgaaagtatattatgaggatattttagttggt	CRISPR spacer
aaataaaatatattatgaagatattttactgtat	Protospacer
 .  ***.**********.********* *  .*

11. spacer 2.7|502739|33|CP028922|CRISPRCasFinder,CRT matches to MN856012 (Myoviridae sp. isolate 96, complete genome) position: , mismatch: 10, identity: 0.697

atataatccgccagaattcataatgaaatacag	CRISPR spacer
gtctaatgcgccagaattcataattaacactct	Protospacer
.* **** **************** **   .  

12. spacer 4.12|2001265|33|CP028922|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045294 (Paenibacillus guangzhouensis strain KCTC 33171 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

ttgccacggtctcagccagctggcgccaggaaa	CRISPR spacer
tgcagacggtcacagccagctggcggcagctgt	Protospacer
*    ****** ************* ***  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 804091 : 814590 9 Mollivirus(25.0%) NA NA
DBSCAN-SWA_2 1349569 : 1357060 10 Clostridioides_phage(16.67%) NA NA
DBSCAN-SWA_3 1599942 : 1608122 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_4 2801579 : 2806585 6 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_5 3039727 : 3131824 103 uncultured_Caudovirales_phage(21.28%) integrase,tRNA,tail,capsid,plate,terminase,portal attL 3074865:3074882|attR 3109718:3109735
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage