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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020487 Enterococcus faecium strain CFSAN059070 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 0 0
CP020484 Enterococcus faecium strain CFSAN059070 chromosome, complete genome 1 crisprs DEDDh,cas2,RT,DinG,cas3,cas14j,csa3 0 0 11 0
CP020485 Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence 0 crisprs cas14j,RT,DEDDh 0 0 3 0
CP020486 Enterococcus faecium strain CFSAN059070 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 3 0

Results visualization

1. CP020484
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020484_1 2401986-2402095 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 516753 : 583716 58 Streptococcus_phage(15.38%) transposase,integrase,protease,tRNA attL 512306:512325|attR 590565:590584
DBSCAN-SWA_2 726195 : 734667 9 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_3 787676 : 885190 112 uncultured_Caudovirales_phage(13.95%) portal,terminase,holin,protease,transposase,head,tRNA,tail,plate,integrase,capsid attL 780948:780963|attR 821749:821764
DBSCAN-SWA_4 1160537 : 1170080 10 unidentified_phage(16.67%) NA NA
DBSCAN-SWA_5 1331421 : 1399215 59 Streptococcus_phage(33.33%) tail,transposase,integrase attL 1368760:1368776|attR 1393792:1393808
DBSCAN-SWA_6 1445886 : 1488571 51 Streptococcus_phage(23.08%) transposase,protease NA
DBSCAN-SWA_7 1496421 : 1543259 43 Streptococcus_phage(44.44%) transposase,integrase attL 1491611:1491626|attR 1501332:1501347
DBSCAN-SWA_8 1647454 : 1769657 110 Streptococcus_phage(35.14%) transposase,tRNA,protease,integrase attL 1660015:1660032|attR 1683501:1683518
DBSCAN-SWA_9 1775360 : 1946375 184 Streptococcus_phage(21.13%) portal,transposase,holin,protease,terminase,head,tRNA,tail,integrase,capsid attL 1768280:1768339|attR 1930903:1932416
DBSCAN-SWA_10 2521649 : 2643009 112 Enterococcus_phage(22.86%) portal,transposase,holin,terminase,protease,tRNA,head,tail,plate,integrase attL 2572730:2572745|attR 2611679:2611694
DBSCAN-SWA_11 2750102 : 2766998 18 Streptococcus_phage(92.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP020485
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2691 : 55756 50 Bacillus_phage(28.57%) integrase,transposase attL 13431:13448|attR 56559:56576
DBSCAN-SWA_2 69251 : 110507 35 Streptococcus_phage(45.45%) protease,transposase NA
DBSCAN-SWA_3 146867 : 181964 35 Streptococcus_phage(36.36%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP020486
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2672 4 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_2 6819 : 14865 8 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_3 20235 : 47988 30 Streptococcus_phage(70.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage