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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020488 Enterococcus faecium strain CFSAN059071 chromosome, complete genome 1 crisprs DEDDh,cas2,RT,DinG,cas3,cas14j,csa3 0 0 12 0
CP020489 Enterococcus faecium strain CFSAN059071 plasmid unnamed1, complete sequence 0 crisprs cas14j,RT,DEDDh 0 0 3 0
CP020491 Enterococcus faecium strain CFSAN059071 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 0 0
CP020490 Enterococcus faecium strain CFSAN059071 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 3 0

Results visualization

1. CP020488
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020488_1 2405034-2405143 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 518277 : 585240 58 Streptococcus_phage(15.38%) transposase,protease,tRNA,integrase attL 513830:513849|attR 592089:592108
DBSCAN-SWA_2 727719 : 736191 9 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_3 789200 : 886714 112 uncultured_Caudovirales_phage(13.95%) capsid,portal,head,tRNA,terminase,integrase,transposase,protease,tail,plate,holin attL 782472:782487|attR 823273:823288
DBSCAN-SWA_4 1162062 : 1171605 10 unidentified_phage(16.67%) NA NA
DBSCAN-SWA_5 1332946 : 1400740 59 Streptococcus_phage(33.33%) tail,transposase,integrase attL 1370285:1370301|attR 1395317:1395333
DBSCAN-SWA_6 1447410 : 1490095 51 Streptococcus_phage(23.08%) protease,transposase NA
DBSCAN-SWA_7 1497945 : 1544784 43 Streptococcus_phage(44.44%) transposase,integrase attL 1493135:1493150|attR 1502856:1502871
DBSCAN-SWA_8 1648979 : 1771182 110 Streptococcus_phage(35.14%) tRNA,protease,transposase,integrase attL 1661540:1661557|attR 1685026:1685043
DBSCAN-SWA_9 1776885 : 1947900 184 Streptococcus_phage(21.13%) capsid,portal,head,transposase,integrase,terminase,tRNA,protease,tail,holin attL 1769805:1769864|attR 1932428:1933941
DBSCAN-SWA_10 1984043 : 2047655 60 Bacillus_phage(28.57%) holin,transposase,tRNA NA
DBSCAN-SWA_11 2524698 : 2646058 112 Enterococcus_phage(22.86%) portal,head,tRNA,transposase,terminase,integrase,protease,tail,plate,holin attL 2575779:2575794|attR 2614728:2614743
DBSCAN-SWA_12 2753151 : 2770047 18 Streptococcus_phage(92.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP020489
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2691 : 55756 50 Bacillus_phage(28.57%) transposase,integrase attL 13431:13448|attR 56559:56576
DBSCAN-SWA_2 69251 : 110507 35 Streptococcus_phage(45.45%) transposase,protease NA
DBSCAN-SWA_3 146867 : 181964 35 Streptococcus_phage(36.36%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP020490
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2672 4 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_2 6819 : 14865 8 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_3 20235 : 47988 30 Streptococcus_phage(70.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage