CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	0 crisprs	DEDDh,WYL,cas3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	8
CP027680	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-3, complete sequence	0 crisprs	NA	0
CP027678	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-1, complete sequence	0 crisprs	csa3,PD-DExK	2
CP027679	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-2, complete sequence	0 crisprs	DEDDh	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34853 : 39105

Salmonella_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWD06820.1\|34853_35711_-	DNA adenine methylase	E5G6L8	Salmonella_phage	8.1e-158	95.1
AWD06821.1\|35707_35935_-	hypothetical protein	E5G6L7	Salmonella_phage	2.3e-35	97.3
AWD06822.1\|35934_36168_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	1.2e-31	96.1
AWD06823.1\|36235_36577_-	hypothetical protein	E5G6L5	Salmonella_phage	1.3e-55	98.2
AWD06824.1\|36658_36907_+	hypothetical protein	NA	NA	NA	NA
AWD06825.1\|36992_37289_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
AWD06826.1\|37838_38060_-	regulator	NA	NA	NA	NA
AWD06827.1\|38166_39105_+	Repressor protein CI	A0A1S6KZZ7	Salmonella_phage	6.1e-34	39.6

DBSCAN-SWA_2

358472 : 408368

Salmonella_phage(58.9%)

head,lysis,tail,protease,integrase,terminase

attL 357387:357433|attR 408382:408428

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
357387:357433	attL	NA	NA	NA	NA
AWD11276.1\|358472_358580_+	hypothetical protein	S4TND2	Salmonella_phage	2.2e-09	85.3
AWD07101.1\|358753_359935_-	hypothetical protein	S4TSP4	Salmonella_phage	8.5e-57	69.9
AWD07102.1\|359944_360904_-	hypothetical protein	H6WRW5	Salmonella_phage	2.3e-177	96.2
AWD07103.1\|360912_364089_-	hypothetical protein	I6R9B3	Salmonella_phage	0.0e+00	93.8
AWD07104.1\|364098_364626_-\|tail	tail assembly protein	I6RSM0	Salmonella_phage	4.2e-64	93.8
AWD07105.1\|364568_365288_-\|tail	phage tail protein	I6S1R8	Salmonella_phage	1.2e-143	97.5
AWD11277.1\|365287_365992_-\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	2.7e-135	97.9
AWD07106.1\|366160_366418_+	hypothetical protein	K7P7V5	Enterobacteria_phage	9.5e-30	87.7
AWD07107.1\|366629_366977_-\|tail	phage tail protein	A0A1V0E5N3	Salmonella_phage	1.1e-60	95.7
AWD07108.1\|367069_367468_+	hypothetical protein	A0A1V0E5N6	Salmonella_phage	2.2e-70	100.0
AWD07109.1\|367468_370663_-	hypothetical protein	Q5G8W8	Enterobacteria_phage	4.7e-251	55.0
AWD07110.1\|370838_371036_+	hypothetical protein	H6WRV6	Salmonella_phage	5.6e-30	100.0
AWD07111.1\|371019_371232_-	hypothetical protein	H6WRV5	Salmonella_phage	5.4e-31	95.7
AWD07112.1\|371306_371594_-	hypothetical protein	A0A1V0E5N1	Salmonella_phage	1.8e-45	100.0
AWD07113.1\|371695_372049_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	4.2e-60	100.0
AWD07114.1\|372181_372910_-	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	4.7e-74	64.6
AWD07115.1\|373840_374008_-	Arc family DNA binding domain-containing protein	G9L6D7	Escherichia_phage	2.7e-17	76.4
AWD07116.1\|374133_374589_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	3.5e-27	54.5
AWD07117.1\|374610_375339_-	DNA-binding protein	I6S1R0	Salmonella_phage	2.0e-141	99.2
AWD07118.1\|375560_376214_-	hypothetical protein	H6WRU2	Salmonella_phage	1.3e-120	99.5
AWD07119.1\|376258_376996_-	hypothetical protein	Q5G8X3	Enterobacteria_phage	2.7e-130	98.8
AWD07120.1\|377011_377398_-	hypothetical protein	Q5G8X4	Enterobacteria_phage	3.8e-67	97.7
AWD07121.1\|377394_377790_-	hypothetical protein	Q5G8X5	Enterobacteria_phage	7.2e-69	100.0
AWD07122.1\|377797_378160_-	hypothetical protein	I6S1Q5	Salmonella_phage	1.3e-64	95.8
AWD07123.1\|378143_378332_-	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-30	100.0
AWD07124.1\|378331_378733_-	hypothetical protein	I6S619	Salmonella_phage	7.8e-71	97.7
AWD07125.1\|378784_378964_-	glycoprotein	I6R9A3	Salmonella_phage	6.8e-27	100.0
AWD07126.1\|378973_380050_-	hypothetical protein	A0A1V0E5P6	Salmonella_phage	1.4e-204	98.6
AWD07127.1\|380067_380517_-	hypothetical protein	H6WRT3	Salmonella_phage	1.6e-77	100.0
AWD07128.1\|380529_381792_-	hypothetical protein	H6WRT2	Salmonella_phage	1.5e-237	99.5
AWD07129.1\|381807_382767_-\|head	phage head morphogenesis protein	H6WRT1	Salmonella_phage	4.6e-178	99.7
AWD07130.1\|382720_384073_-	DUF1073 domain-containing protein	H6WRT0	Salmonella_phage	1.5e-259	99.8
AWD07131.1\|384205_385525_-\|terminase	PBSX family phage terminase large subunit	H6WRS9	Salmonella_phage	3.5e-261	99.3
AWD07132.1\|385508_385940_-\|terminase	terminase small subunit	A0A1V0E5Q4	Salmonella_phage	7.6e-72	100.0
AWD07133.1\|386341_386821_-	DUF2829 domain-containing protein	A0A1Y0T2L3	Pseudomonas_phage	5.5e-55	59.7
AWD07134.1\|386902_387055_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.6e-21	98.0
AWD07135.1\|387042_387510_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	1.4e-74	96.1
AWD11278.1\|387506_388004_-	lysozyme	A0A192Y6U3	Salmonella_phage	3.2e-90	98.8
AWD07136.1\|387981_388185_-	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
AWD07137.1\|388434_388656_+	hypothetical protein	NA	NA	NA	NA
AWD07138.1\|389290_389914_-	antitermination protein	K7PM87	Enterobacteria_phage	3.0e-114	100.0
AWD07139.1\|389910_390576_-	serine/threonine protein phosphatase	K7P721	Enterobacteria_phage	1.9e-130	99.1
AWD07140.1\|390553_390760_-	protein ninH	Q716C0	Shigella_phage	7.3e-33	100.0
AWD07141.1\|390756_391359_-	recombination protein NinG	A0A1U9AJF8	Stx1_converting_phage	9.8e-94	96.1
AWD07142.1\|391333_391900_-	endonuclease	A0A1U9AJK5	Stx1_converting_phage	6.6e-108	99.5
AWD07143.1\|391892_392069_-	protein ninF	Q76H71	Enterobacteria_phage	2.5e-26	96.6
AWD07144.1\|392061_392403_-	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	1.0e-63	99.1
AWD07145.1\|392405_392582_-	NinE family protein	Q716C5	Shigella_phage	1.0e-27	100.0
AWD07146.1\|392578_393106_-	phage N-6-adenine-methyltransferase	K7PJZ4	Enterobacterial_phage	2.3e-99	99.4
AWD11279.1\|393102_393525_-	hypothetical protein	A0A2H4FNF5	Salmonella_phage	4.8e-63	80.7
AWD07147.1\|393517_393745_-	hypothetical protein	A0A1I9LJP7	Stx_converting_phage	6.7e-11	52.9
AWD07148.1\|393833_395270_-	helicase DnaB	E7C9R5	Salmonella_phage	1.3e-272	99.0
AWD07149.1\|395259_396150_-	DNA replication protein	Q716D3	Shigella_phage	6.7e-147	92.6
AWD07150.1\|396330_396627_-	hypothetical protein	A4KWW1	Enterobacteria_phage	1.5e-47	99.0
AWD07151.1\|396736_396952_-	XRE family transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
AWD11280.1\|397027_397723_+	LexA family transcriptional repressor	A0A0N7BTS4	Escherichia_phage	2.0e-130	97.0
AWD07152.1\|398416_398779_+	antitermination N domain protein	K7PHE0	Enterobacteria_phage	2.0e-57	98.3
AWD07153.1\|399156_399627_+	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	4.5e-86	98.1
AWD07154.1\|399786_400101_+	superinfection exclusion protein	E7C9Q4	Salmonella_phage	2.7e-55	98.1
AWD11281.1\|400170_400332_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	E7C9Q3	Salmonella_phage	4.9e-24	100.0
AWD07155.1\|400324_400438_+	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	7.8e-13	100.0
AWD07156.1\|400434_400623_+	hypothetical protein	C6ZR38	Salmonella_phage	1.3e-28	100.0
AWD07157.1\|400631_401339_+	recombinase	E7C9Q0	Salmonella_phage	4.3e-133	95.3
AWD07158.1\|401339_401798_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	2.6e-70	89.0
AWD07159.1\|401806_402286_+	hypothetical protein	Q716E9	Shigella_phage	4.2e-87	91.8
AWD07160.1\|402294_402843_+	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	8.6e-105	98.9
AWD07161.1\|402858_403152_+	RecBCD nuclease inhibitor	A0A1V0E5L7	Salmonella_phage	1.8e-48	96.9
AWD07162.1\|403162_403333_+	DUF2737 domain-containing protein	I6S642	Salmonella_phage	1.8e-24	98.2
AWD07163.1\|403329_403947_+	Eae-like protein	Q5G8U6	Enterobacteria_phage	1.2e-65	64.4
AWD07164.1\|404056_404572_+	DUF262 domain-containing protein	Q8HAA5	Salmonella_phage	2.1e-97	99.4
AWD07165.1\|404568_405096_+	hypothetical protein	Q8HAA6	Salmonella_phage	9.0e-43	73.8
AWD07166.1\|405097_405316_+	sugar acetyltransferase inhibitor	C6ZR28	Salmonella_phage	2.0e-33	95.8
AWD07167.1\|405319_405931_+	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	1.6e-54	84.7
AWD07168.1\|407204_408368_+\|integrase	site-specific integrase	B9UDL9	Salmonella_phage	1.6e-225	99.0
408382:408428	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1436864 : 1483828

Burkholderia_phage(40.91%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWD08082.1\|1436864_1437863_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AWD08083.1\|1437950_1439261_-	conjugal transfer protein	NA	NA	NA	NA
AWD08084.1\|1439507_1440023_+	transcriptional regulator Zur	NA	NA	NA	NA
AWD08085.1\|1440122_1440332_-	CsbD family protein	NA	NA	NA	NA
AWD11323.1\|1440353_1440467_-	hypothetical protein	NA	NA	NA	NA
AWD08086.1\|1440463_1441789_-	MATE family efflux transporter	NA	NA	NA	NA
AWD08087.1\|1441967_1442576_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AWD08088.1\|1442684_1443053_-	diacylglycerol kinase	NA	NA	NA	NA
AWD08089.1\|1443223_1445644_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AWD08090.1\|1445742_1446615_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AWD08091.1\|1446628_1447126_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AWD08092.1\|1447306_1448224_-	maltose operon protein MalM	NA	NA	NA	NA
AWD08093.1\|1448387_1449746_-	maltoporin	NA	NA	NA	NA
AWD08094.1\|1449834_1450944_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AWD08095.1\|1451305_1452496_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
AWD08096.1\|1452627_1454172_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AWD08097.1\|1454186_1455077_+	maltose ABC transporter permease	NA	NA	NA	NA
AWD08098.1\|1455242_1455653_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AWD08099.1\|1455795_1457892_-	YjbH domain-containing protein	NA	NA	NA	NA
AWD08100.1\|1457891_1458629_-	hypothetical protein	NA	NA	NA	NA
AWD08101.1\|1458625_1459264_-	YjbF family lipoprotein	NA	NA	NA	NA
AWD08102.1\|1459327_1459570_-	outer membrane protein	NA	NA	NA	NA
AWD08103.1\|1460013_1461663_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AWD08104.1\|1462007_1463357_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AWD08105.1\|1463487_1463835_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AWD08106.1\|1464410_1464698_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
AWD08107.1\|1464700_1465306_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	1.2e-59	59.9
AWD08108.1\|1465318_1465633_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AWD08109.1\|1466243_1466441_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AWD08110.1\|1466430_1467858_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	71.2
AWD08111.1\|1467857_1468382_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AWD08112.1\|1468433_1468751_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AWD08113.1\|1468710_1468839_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AWD08114.1\|1468935_1471290_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	6.2e-67	30.9
AWD08115.1\|1471289_1472243_+	chemotaxis protein	A4JWL1	Burkholderia_virus	1.8e-36	50.8
AWD08116.1\|1472242_1472452_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AWD08117.1\|1472439_1473483_+	phage protein D	Q6QIA2	Burkholderia_phage	1.9e-76	45.3
AWD08118.1\|1473492_1474215_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	5.1e-12	41.0
AWD08119.1\|1474223_1474466_+	hypothetical protein	NA	NA	NA	NA
AWD08120.1\|1474541_1474904_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
AWD08121.1\|1474900_1475830_+	glycosyltransferase	S5FKN0	Shigella_phage	6.1e-151	84.4
AWD08122.1\|1475829_1477377_+	hypothetical protein	B9UDL6	Salmonella_phage	2.5e-48	29.9
AWD08123.1\|1477540_1477900_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	4.7e-35	64.2
AWD08124.1\|1477890_1479006_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	3.4e-100	51.7
AWD08125.1\|1478998_1479631_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
AWD08126.1\|1479633_1481292_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.0e-52	52.7
AWD08127.1\|1481298_1481913_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AWD08128.1\|1481909_1482365_+	hypothetical protein	NA	NA	NA	NA
AWD08129.1\|1483099_1483828_+	hypothetical protein	A0A292GAQ8	Xanthomonas_phage	3.5e-13	28.2

DBSCAN-SWA_4

1622612 : 1659922

Escherichia_phage(44.44%)

head,plate,lysis,terminase,integrase,portal,holin,tail,capsid

attL 1622459:1622501|attR 1654980:1655022

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1622459:1622501	attL	NA	NA	NA	NA
AWD08242.1\|1622612_1622894_-	transcriptional regulator	M1SNR2	Escherichia_phage	1.3e-48	96.8
AWD08243.1\|1622912_1624076_-	hypothetical protein	A0A0F7LDZ2	Escherichia_phage	9.1e-205	99.0
AWD08244.1\|1624075_1624555_-\|tail	phage tail protein	O64315	Escherichia_phage	5.1e-85	100.0
AWD08245.1\|1624569_1627017_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	99.4
AWD11327.1\|1627009_1627129_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
AWD08246.1\|1627161_1627437_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
AWD08247.1\|1627492_1628011_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
AWD08248.1\|1628023_1629214_-\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.6e-225	100.0
AWD08249.1\|1629273_1629867_-	DNA-invertase	A0A0F7LA37	Escherichia_phage	6.1e-104	97.5
AWD08250.1\|1629894_1631178_+\|tail	phage tail protein	A0A1B0VFW4	Salmonella_phage	3.9e-241	99.5
AWD08251.1\|1631147_1631765_+\|tail	tail assembly chaperone	A0A1B0VCD0	Salmonella_phage	5.7e-113	100.0
AWD08252.1\|1631768_1632176_-\|tail	tail assembly chaperone	A0A1B0V844	Salmonella_phage	4.9e-73	100.0
AWD08253.1\|1633983_1634595_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.7e-117	100.0
AWD08254.1\|1634587_1635496_-\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	2.6e-162	99.7
AWD08255.1\|1635500_1635848_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
AWD08256.1\|1635844_1636480_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.6e-110	98.1
AWD08257.1\|1636546_1636999_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	8.2e-77	100.0
AWD08258.1\|1636991_1637459_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	3.3e-81	98.1
AWD08259.1\|1637421_1637595_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
AWD08260.1\|1637566_1637992_-	protein lysB	U5N3W5	Enterobacteria_phage	5.2e-65	95.0
AWD08261.1\|1637979_1638405_-	protein lysA	A0A0F7LBP4	Escherichia_phage	6.8e-57	91.5
AWD08262.1\|1638419_1638917_-	lysozyme	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
AWD08263.1\|1638916_1639198_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
AWD08264.1\|1639201_1639405_-\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
AWD08265.1\|1639404_1639914_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	2.5e-90	99.4
AWD08266.1\|1640013_1640757_-\|terminase	terminase	A0A0F7LBP7	Escherichia_phage	6.0e-125	98.8
AWD08267.1\|1640760_1641834_-\|capsid	phage major capsid protein, P2 family	Q94MC7	Enterobacteria_phage	5.7e-201	99.2
AWD08268.1\|1641892_1642747_-\|capsid	capsid scaffolding protein	Q94MF5	Enterobacteria_phage	2.2e-139	99.6
AWD08269.1\|1642920_1644693_+	oxidoreductase	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
AWD08270.1\|1644692_1645727_+\|portal	phage portal protein	Q858W8	Yersinia_virus	4.2e-201	99.4
AWD08271.1\|1646100_1647243_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	1.6e-73	42.9
AWD08272.1\|1647244_1647925_+	hypothetical protein	A0A0R6PER3	Moraxella_phage	9.9e-18	31.7
AWD11328.1\|1647954_1648977_-	DNA (cytosine-5-)-methyltransferase	A0A0R6PG08	Moraxella_phage	5.5e-113	59.0
AWD08273.1\|1649063_1651361_-	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.5
AWD08274.1\|1651350_1651626_-	hypothetical protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
AWD08275.1\|1651622_1651847_-	hypothetical protein	S4TRY6	Salmonella_phage	2.9e-35	100.0
AWD08276.1\|1651849_1652149_-	hypothetical protein	S4TUD1	Salmonella_phage	3.2e-45	99.0
AWD08277.1\|1652148_1652373_-	DUF2732 domain-containing protein	S4TP68	Salmonella_phage	4.7e-33	100.0
AWD08278.1\|1652436_1652937_-	replication protein B	M1SV55	Escherichia_phage	2.6e-92	100.0
AWD08279.1\|1653106_1653379_-	hypothetical protein	Q1JS36	Enterobacteria_phage	1.4e-47	100.0
AWD08280.1\|1653515_1653809_+	transcriptional regulator	Q1JS37	Enterobacteria_phage	2.7e-49	100.0
AWD08281.1\|1653878_1654859_+\|integrase	integrase	S4TP66	Salmonella_phage	4.7e-186	100.0
AWD08282.1\|1655044_1655545_-	stress adaptor protein CpxP	NA	NA	NA	NA
1654980:1655022	attR	NA	NA	NA	NA
AWD08283.1\|1655695_1656394_+	DNA-binding response regulator	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
AWD08284.1\|1656390_1657764_+	two-component system sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
AWD08285.1\|1657811_1658015_-	hypothetical protein	NA	NA	NA	NA
AWD08286.1\|1658135_1658531_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
AWD08287.1\|1658542_1659295_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
AWD08288.1\|1659301_1659922_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

DBSCAN-SWA_5

2532763 : 2578441

Cronobacter_phage(65.0%)

head,tail,tRNA,integrase,portal,holin,terminase,capsid

attL 2526829:2526849|attR 2577156:2577176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2526829:2526849	attL	NA	NA	NA	NA
AWD09065.1\|2532763_2534332_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-12	33.5
AWD09066.1\|2534328_2534976_-	PadR family transcriptional regulator	NA	NA	NA	NA
AWD09067.1\|2535207_2535975_+	siderophore-interacting protein	NA	NA	NA	NA
AWD09068.1\|2536232_2538014_-	ATP-binding protein	X2KLG0	Campylobacter_phage	6.4e-08	23.2
AWD09069.1\|2538003_2539041_-\|integrase	integrase	F1BUS9	Erwinia_phage	1.5e-121	63.9
AWD09070.1\|2539044_2539611_-	hypothetical protein	Q4ZA70	Staphylococcus_virus	1.3e-18	32.8
AWD09071.1\|2539627_2540209_-	phage repressor protein	A0A218M4J1	Erwinia_phage	1.2e-27	37.2
AWD09072.1\|2540352_2540574_+	regulator	NA	NA	NA	NA
AWD09073.1\|2540604_2541108_+	hypothetical protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
AWD09074.1\|2541117_2541345_+	hypothetical protein	NA	NA	NA	NA
AWD09075.1\|2541334_2541760_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
AWD09076.1\|2541759_2542161_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
AWD09077.1\|2542228_2542462_+	DUF2732 domain-containing protein	NA	NA	NA	NA
AWD09078.1\|2542452_2543313_+	DNA adenine methylase	F1BUN1	Cronobacter_phage	1.1e-130	82.0
AWD09079.1\|2543309_2545331_+	replication endonuclease	F1BUM9	Cronobacter_phage	7.9e-297	74.5
AWD09080.1\|2545450_2545657_+	hypothetical protein	NA	NA	NA	NA
AWD09081.1\|2545630_2545954_-	transcriptional regulator	F1BUM8	Cronobacter_phage	8.0e-50	92.3
AWD09082.1\|2545950_2547012_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.7e-162	76.8
AWD09083.1\|2547008_2548784_-\|terminase	terminase	F1BUM5	Cronobacter_phage	9.8e-291	83.1
AWD09084.1\|2548944_2549748_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.0e-78	56.0
AWD09085.1\|2549809_2550832_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.9e-159	81.5
AWD09086.1\|2550835_2551537_+\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
AWD09087.1\|2551582_2552086_+\|head	head completion protein	F1BUL8	Cronobacter_phage	1.8e-64	82.7
AWD09088.1\|2552082_2552589_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.2e-63	69.1
AWD09089.1\|2552585_2553293_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.3e-100	76.1
AWD09090.1\|2553289_2554417_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
AWD09091.1\|2554413_2554869_+	DUF2597 domain-containing protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
AWD09092.1\|2554878_2555172_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
AWD09093.1\|2555168_2555510_+	hypothetical protein	F1BUL3	Cronobacter_phage	2.2e-50	91.1
AWD09094.1\|2555509_2555842_+	hypothetical protein	F1BUL2	Cronobacter_phage	1.5e-35	70.9
AWD09095.1\|2555813_2556002_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.5e-21	77.4
AWD09096.1\|2555988_2556246_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
AWD09097.1\|2556433_2558404_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	3.2e-274	70.8
AWD09098.1\|2558400_2558730_+	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
AWD09099.1\|2558726_2559911_+	hypothetical protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
AWD09100.1\|2559897_2560491_+	hypothetical protein	F1BUK5	Cronobacter_phage	5.0e-90	82.6
AWD09101.1\|2560500_2562735_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	7.2e-182	73.7
AWD09102.1\|2562747_2563302_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	2.7e-90	89.0
AWD09103.1\|2563291_2564017_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.7e-63	53.5
AWD09104.1\|2563988_2564534_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
AWD09105.1\|2564533_2566237_+	hypothetical protein	F1BUJ7	Cronobacter_phage	9.9e-224	81.4
AWD09106.1\|2566988_2567174_+	hypothetical protein	NA	NA	NA	NA
AWD09107.1\|2567281_2567908_+	reverse transcriptase	NA	NA	NA	NA
AWD09108.1\|2568231_2568738_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
AWD09109.1\|2568794_2569358_-	DUF1768 domain-containing protein	A8E2M1	Enterococcus_phage	1.1e-33	44.7
AWD09110.1\|2569417_2571400_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
AWD09111.1\|2571414_2573157_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.1e-72	37.5
AWD09112.1\|2573392_2573608_-	30S ribosomal protein S21	NA	NA	NA	NA
AWD09113.1\|2573835_2574849_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
AWD09114.1\|2574752_2575091_-	hypothetical protein	NA	NA	NA	NA
AWD09115.1\|2575098_2575710_-	acyl-phosphate--glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA
AWD09116.1\|2575816_2576176_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
AWD09117.1\|2576273_2577095_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
AWD09118.1\|2577199_2578441_-\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	6.5e-92	47.9
2577156:2577176	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3595265 : 3604436

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWD10027.1\|3595265_3596213_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AWD10028.1\|3596196_3596928_+	ABC transporter permease	NA	NA	NA	NA
AWD10029.1\|3596908_3597016_-	hypothetical protein	NA	NA	NA	NA
AWD10030.1\|3597075_3597807_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AWD10031.1\|3598029_3599715_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AWD10032.1\|3599711_3600431_+	DNA-binding response regulator	NA	NA	NA	NA
AWD10033.1\|3600477_3600945_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	1.1e-73	89.7
AWD10034.1\|3601001_3601532_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AWD10035.1\|3601703_3602162_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AWD10036.1\|3602402_3604436_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_7

3684257 : 3694764

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWD10101.1\|3684257_3685661_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	26.5
AWD10102.1\|3685838_3686732_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AWD10103.1\|3687108_3688194_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AWD10104.1\|3688193_3689093_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AWD11410.1\|3689140_3690019_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
AWD10105.1\|3690019_3690571_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
AWD10106.1\|3690576_3691551_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AWD10107.1\|3691566_3692340_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AWD10108.1\|3692344_3693424_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
AWD10109.1\|3693450_3694764_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1

DBSCAN-SWA_8

4878013 : 4885325

Ralstonia_phage(16.67%)

integrase,protease

attL 4872801:4872815|attR 4884061:4884075

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4872801:4872815	attL	NA	NA	NA	NA
AWD11248.1\|4878013_4878391_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
AWD11249.1\|4878552_4878750_+	hypothetical protein	NA	NA	NA	NA
AWD11250.1\|4878961_4881238_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AWD11251.1\|4881268_4881589_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AWD11252.1\|4881912_4882134_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AWD11253.1\|4882088_4882283_-	hypothetical protein	NA	NA	NA	NA
AWD11254.1\|4882263_4884210_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	3.1e-40	42.6
4884061:4884075	attR	NA	NA	NA	NA
AWD11255.1\|4884206_4885325_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP027678

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17052 : 75069

Escherichia_phage(55.56%)

transposase,integrase

attL 10281:10295|attR 39073:39087

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
10281:10295	attL	NA	NA	NA	NA
AWD11485.1\|17052_19986_-\|integrase	site-specific integrase	NA	NA	NA	NA
AWD11486.1\|19982_21320_-	site-specific recombinase	NA	NA	NA	NA
AWD11487.1\|22278_23088_-	DsbA family protein	NA	NA	NA	NA
AWD11488.1\|23194_23806_+	hypothetical protein	NA	NA	NA	NA
AWD11735.1\|23865_24126_-	hypothetical protein	NA	NA	NA	NA
AWD11489.1\|24321_24714_-	hypothetical protein	NA	NA	NA	NA
AWD11490.1\|24738_25488_-	thiol:disulfide interchange protein	NA	NA	NA	NA
AWD11491.1\|25635_26175_+	lytic transglycosylase	NA	NA	NA	NA
AWD11492.1\|26257_26815_+	hypothetical protein	NA	NA	NA	NA
AWD11493.1\|26938_28000_+	HNH endonuclease	NA	NA	NA	NA
AWD11494.1\|28009_28516_+	hypothetical protein	NA	NA	NA	NA
AWD11495.1\|28638_32589_-	conjugal transfer protein TraG	NA	NA	NA	NA
AWD11496.1\|32597_34013_-	conjugal transfer protein	NA	NA	NA	NA
AWD11497.1\|34002_35049_-	thioredoxin family protein	NA	NA	NA	NA
AWD11498.1\|35640_36153_-	hypothetical protein	NA	NA	NA	NA
AWD11499.1\|36154_36955_-	trhR	NA	NA	NA	NA
AWD11500.1\|37714_38200_+	plasmid transfer protein	NA	NA	NA	NA
AWD11501.1\|38196_38934_+	hypothetical protein	NA	NA	NA	NA
AWD11502.1\|38943_42090_+	helicase	NA	NA	NA	NA
39073:39087	attR	NA	NA	NA	NA
AWD11503.1\|42089_44174_+	hypothetical protein	NA	NA	NA	NA
AWD11504.1\|44173_45283_+	hypothetical protein	NA	NA	NA	NA
AWD11505.1\|45269_45932_+	DUF4400 domain-containing protein	NA	NA	NA	NA
AWD11506.1\|45942_47124_+	S49 family peptidase	B8QTU8	Erwinia_phage	7.5e-13	29.2
AWD11507.1\|47125_47857_+	NERD domain-containing protein	NA	NA	NA	NA
AWD11508.1\|48143_48497_-	hypothetical protein	NA	NA	NA	NA
AWD11509.1\|48562_48847_-	hypothetical protein	NA	NA	NA	NA
AWD11510.1\|49203_49503_-	hypothetical protein	NA	NA	NA	NA
AWD11511.1\|49935_50304_-	hypothetical protein	NA	NA	NA	NA
AWD11512.1\|50529_51066_-	hypothetical protein	NA	NA	NA	NA
AWD11513.1\|51133_51571_-	hypothetical protein	NA	NA	NA	NA
AWD11514.1\|51615_51912_-	hypothetical protein	NA	NA	NA	NA
AWD11515.1\|52046_52748_-	hypothetical protein	NA	NA	NA	NA
AWD11516.1\|53062_53344_-	hypothetical protein	NA	NA	NA	NA
AWD11517.1\|53409_54594_-	DNA-binding protein	NA	NA	NA	NA
AWD11518.1\|55010_55205_-	hypothetical protein	NA	NA	NA	NA
AWD11519.1\|55697_56642_+	hypothetical protein	NA	NA	NA	NA
AWD11520.1\|56737_57340_+	hypothetical protein	A0A1V0E5L6	Salmonella_phage	1.7e-08	42.6
AWD11521.1\|57399_57750_+	hypothetical protein	NA	NA	NA	NA
AWD11522.1\|57796_58000_+	hypothetical protein	NA	NA	NA	NA
AWD11523.1\|58281_58602_+	hypothetical protein	NA	NA	NA	NA
AWD11524.1\|59210_59369_-	Hok/Gef family protein	NA	NA	NA	NA
AWD11525.1\|59764_60004_-	antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
AWD11526.1\|60028_60223_+	hypothetical protein	NA	NA	NA	NA
AWD11527.1\|60266_61190_-	cation transporter	NA	NA	NA	NA
AWD11736.1\|61389_61962_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
AWD11528.1\|62999_63704_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWD11529.1\|63798_64056_+	hypothetical protein	NA	NA	NA	NA
AWD11530.1\|64285_65077_+	hypothetical protein	NA	NA	NA	NA
AWD11531.1\|65127_65328_+	hypothetical protein	NA	NA	NA	NA
AWD11737.1\|65374_66298_+\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	3.8e-177	99.7
AWD11532.1\|66414_66744_+	hypothetical protein	NA	NA	NA	NA
AWD11533.1\|68559_68799_+	hypothetical protein	NA	NA	NA	NA
AWD11534.1\|68861_69173_+	hypothetical protein	NA	NA	NA	NA
AWD11535.1\|69169_69364_+	hypothetical protein	NA	NA	NA	NA
AWD11536.1\|69879_70584_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWD11738.1\|70743_72252_+\|transposase	IS21-like element ISCfr8 family transposase	A0A2L1IVA1	Escherichia_phage	9.9e-26	32.7
AWD11537.1\|72238_72979_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.4e-43	41.7
AWD11538.1\|73206_73761_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA
AWD11539.1\|74364_75069_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

207068 : 264625

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWD11658.1\|207068_208073_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
AWD11659.1\|208151_211118_-\|transposase	Tn3-like element ISPa38 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2
AWD11660.1\|211276_211567_+	nucleotidyltransferase	NA	NA	NA	NA
AWD11661.1\|211563_211965_+	DUF86 domain-containing protein	NA	NA	NA	NA
AWD11662.1\|211954_212311_+	cupin domain-containing protein	NA	NA	NA	NA
AWD11663.1\|212565_212892_+	hypothetical protein	NA	NA	NA	NA
AWD11664.1\|212888_213389_+\|transposase	transposase	NA	NA	NA	NA
AWD11665.1\|213385_213757_+	hypothetical protein	NA	NA	NA	NA
AWD11666.1\|213956_214661_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWD11667.1\|215171_215876_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWD11668.1\|215965_216730_-	resolvase	I3WFA4	Macacine_betaherpesvirus	1.9e-25	52.4
AWD11669.1\|216728_216920_+	hypothetical protein	NA	NA	NA	NA
AWD11670.1\|217194_217872_+	hypothetical protein	NA	NA	NA	NA
AWD11671.1\|217902_218526_-	RES domain-containing protein	NA	NA	NA	NA
AWD11672.1\|219056_219752_+	hypothetical protein	NA	NA	NA	NA
AWD11745.1\|219927_220185_-	hypothetical protein	NA	NA	NA	NA
AWD11673.1\|220211_221039_-	ParA family protein	J9QE36	Clostridium_phage	2.0e-12	27.4
AWD11674.1\|221217_222153_+	hypothetical protein	NA	NA	NA	NA
AWD11675.1\|223047_223377_+	hypothetical protein	NA	NA	NA	NA
AWD11676.1\|223898_225728_+	hypothetical protein	NA	NA	NA	NA
AWD11677.1\|225897_228585_-	hypothetical protein	NA	NA	NA	NA
AWD11678.1\|228736_229567_-	hypothetical protein	NA	NA	NA	NA
AWD11746.1\|229682_229871_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AWD11679.1\|230951_231665_+	N-acetyltransferase	NA	NA	NA	NA
AWD11680.1\|231713_231980_+	transcriptional regulator	NA	NA	NA	NA
AWD11681.1\|232281_234258_-	excinuclease ABC subunit UvrB	A7WKH8	Acidianus_filamentous_virus	7.1e-08	39.0
AWD11682.1\|234544_234820_+	regulator	NA	NA	NA	NA
AWD11683.1\|234878_235988_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.8e-32	30.3
AWD11684.1\|236038_236437_+	VOC family protein	NA	NA	NA	NA
AWD11685.1\|236594_237929_+	DUF3422 domain-containing protein	NA	NA	NA	NA
AWD11686.1\|237976_238807_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AWD11687.1\|238824_240135_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
AWD11688.1\|240338_242990_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.1e-156	33.8
AWD11689.1\|243181_243613_+	DUF488 domain-containing protein	NA	NA	NA	NA
AWD11690.1\|243977_244253_+	regulator protein FrmR	NA	NA	NA	NA
AWD11691.1\|244938_246090_+	L-threonine dehydrogenase	NA	NA	NA	NA
AWD11692.1\|246250_246397_-	DUF2474 domain-containing protein	NA	NA	NA	NA
AWD11693.1\|246422_247433_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
AWD11694.1\|247432_248842_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
AWD11695.1\|249820_250201_+	hypothetical protein	NA	NA	NA	NA
AWD11696.1\|250539_250743_+	hypothetical protein	NA	NA	NA	NA
AWD11697.1\|250732_251023_-	korC	NA	NA	NA	NA
AWD11698.1\|251019_252057_-	hypothetical protein	NA	NA	NA	NA
AWD11699.1\|252332_252596_+	hypothetical protein	NA	NA	NA	NA
AWD11700.1\|252592_253159_+	hypothetical protein	NA	NA	NA	NA
AWD11701.1\|254264_254747_-	hypothetical protein	NA	NA	NA	NA
AWD11702.1\|254757_255510_-	winged helix family transcriptional regulator	NA	NA	NA	NA
AWD11703.1\|255786_256392_+	hypothetical protein	NA	NA	NA	NA
AWD11704.1\|256519_256849_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AWD11705.1\|256983_257427_-	DUF4440 domain-containing protein	NA	NA	NA	NA
AWD11706.1\|257662_258409_-	hypothetical protein	NA	NA	NA	NA
AWD11707.1\|258426_259038_-	type 1 fimbrial protein	NA	NA	NA	NA
AWD11708.1\|259004_259805_-	hypothetical protein	NA	NA	NA	NA
AWD11709.1\|259883_260711_-	hypothetical protein	NA	NA	NA	NA
AWD11710.1\|261751_262120_-	hypothetical protein	NA	NA	NA	NA
AWD11711.1\|262803_263862_-	two-component sensor histidine kinase	NA	NA	NA	NA
AWD11712.1\|263920_264625_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP027679

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36708 : 81208

Streptococcus_phage(18.75%)

transposase,integrase

attL 34052:34067|attR 73133:73146

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
34052:34067	attL	NA	NA	NA	NA
AWD11796.1\|36708_37719_-\|integrase	integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
34052:34067	attL	NA	NA	NA	NA
AWD11797.1\|37721_38258_-	hypothetical protein	NA	NA	NA	NA
AWD11798.1\|38250_38538_-	hypothetical protein	NA	NA	NA	NA
AWD11799.1\|38556_38877_-	hypothetical protein	NA	NA	NA	NA
AWD11800.1\|39099_39702_+	hypothetical protein	NA	NA	NA	NA
38962:38977	attR	NA	NA	NA	NA
AWD11801.1\|39717_40170_-	hypothetical protein	NA	NA	NA	NA
38962:38977	attR	NA	NA	NA	NA
AWD11802.1\|40340_40781_-	hypothetical protein	NA	NA	NA	NA
AWD11803.1\|40752_45006_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.1e-18	47.6
AWD11949.1\|44960_45164_+	hypothetical protein	NA	NA	NA	NA
AWD11804.1\|45138_45864_-	hypothetical protein	NA	NA	NA	NA
AWD11805.1\|45977_46379_-	hypothetical protein	NA	NA	NA	NA
AWD11806.1\|46994_47999_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AWD11807.1\|48584_48935_+	mercuric transporter	NA	NA	NA	NA
AWD11808.1\|48948_49224_+	mercuric transporter periplasmic component	NA	NA	NA	NA
AWD11950.1\|49259_49682_+	mercury transport protein MerC	NA	NA	NA	NA
AWD11809.1\|49733_51428_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	2.0e-38	27.6
AWD11810.1\|51445_51808_+	transcriptional regulator	NA	NA	NA	NA
AWD11811.1\|51804_52041_+	mercury resistance protein	NA	NA	NA	NA
AWD11812.1\|52037_52745_+	EAL domain-containing protein	NA	NA	NA	NA
AWD11813.1\|52783_54499_+\|transposase	transposase	NA	NA	NA	NA
AWD11814.1\|54501_55494_+\|transposase	transposase	NA	NA	NA	NA
AWD11815.1\|55462_55963_-	N-acetyltransferase	NA	NA	NA	NA
AWD11816.1\|55981_56161_+	hypothetical protein	NA	NA	NA	NA
AWD11817.1\|56090_56930_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AWD11818.1\|56923_57226_-	hypothetical protein	NA	NA	NA	NA
AWD11819.1\|57229_58042_-	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
AWD11820.1\|58142_59168_-\|transposase	IS30-like element ISAba125 family transposase	W5R8L2	Staphylococcus_phage	1.2e-51	38.1
AWD11821.1\|59319_60099_-	APH(3')-VI family aminoglycoside O-phosphotransferase	E4ZFP6	Streptococcus_phage	6.9e-31	34.7
AWD11822.1\|60589_62131_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AWD11823.1\|62535_63375_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AWD11824.1\|63368_63716_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AWD11951.1\|63884_64439_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA
AWD11825.1\|64599_65559_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.3e-47	40.5
AWD11826.1\|65449_66154_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWD11827.1\|67032_68058_-\|transposase	IS30-like element ISAba125 family transposase	W5R8L2	Staphylococcus_phage	1.2e-51	38.1
AWD11828.1\|68137_68917_-	APH(3')-VI family aminoglycoside O-phosphotransferase	E4ZFP6	Streptococcus_phage	1.2e-30	35.1
AWD11829.1\|69940_70645_-\|transposase	IS6 family transposase IS15DII	A0A077SL39	Escherichia_phage	6.9e-139	100.0
AWD11830.1\|71529_72072_+	DNA-binding protein	NA	NA	NA	NA
AWD11831.1\|72430_73315_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
AWD11832.1\|73370_74846_-	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
AWD11833.1\|75295_76000_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWD11952.1\|76231_76555_+\|transposase	transposase	NA	NA	NA	NA
AWD11834.1\|76592_77150_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
AWD11835.1\|77152_80125_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
AWD11836.1\|80203_81208_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

129219 : 174577

Escherichia_phage(23.08%)

tail,transposase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWD11886.1\|129219_130482_-\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AWD11887.1\|130766_131159_-	conjugal transfer protein TraA	NA	NA	NA	NA
AWD11888.1\|131162_131741_-	type IV conjugative transfer system protein TraV	NA	NA	NA	NA
AWD11889.1\|131737_133054_-	conjugal transfer protein TraB	NA	NA	NA	NA
AWD11890.1\|133050_133968_-	conjugal transfer protein TraK	NA	NA	NA	NA
AWD11891.1\|133951_134578_-	pilus assembly protein	NA	NA	NA	NA
AWD11892.1\|134574_134856_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
AWD11893.1\|135000_135378_-	hypothetical protein	NA	NA	NA	NA
AWD11894.1\|135701_136364_-	hypothetical protein	NA	NA	NA	NA
AWD11895.1\|136363_136741_-	hypothetical protein	NA	NA	NA	NA
AWD11896.1\|136750_137197_-	hypothetical protein	NA	NA	NA	NA
AWD11897.1\|137206_137836_-	DUF4400 domain-containing protein	NA	NA	NA	NA
AWD11898.1\|137792_138377_-	hypothetical protein	NA	NA	NA	NA
AWD11899.1\|138387_140253_-	DUF87 domain-containing protein	NA	NA	NA	NA
AWD11900.1\|140249_143222_-	conjugal transfer protein TraI	NA	NA	NA	NA
AWD11901.1\|143389_144007_+	hypothetical protein	NA	NA	NA	NA
AWD11902.1\|143988_144222_+	hypothetical protein	NA	NA	NA	NA
AWD11903.1\|144221_146414_+	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	9.9e-43	29.4
AWD11904.1\|146428_146917_+	hypothetical protein	NA	NA	NA	NA
AWD11905.1\|147007_147307_-	RNA-binding protein	A0A0K1LLW2	Caulobacter_phage	3.6e-20	55.4
AWD11906.1\|147311_147518_-	hypothetical protein	NA	NA	NA	NA
AWD11907.1\|147518_148136_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AWD11908.1\|148191_148848_-	hypothetical protein	NA	NA	NA	NA
AWD11909.1\|148847_150275_-	DNA cytosine methyltransferase	NA	NA	NA	NA
AWD11910.1\|150278_150779_-	hypothetical protein	I3UMJ0	Colwellia_phage	9.5e-18	38.4
AWD11911.1\|150787_151120_-	hypothetical protein	NA	NA	NA	NA
AWD11955.1\|151104_151536_-	hypothetical protein	NA	NA	NA	NA
AWD11912.1\|151603_152278_-	thymidylate kinase	NA	NA	NA	NA
AWD11913.1\|152252_152534_-	hypothetical protein	NA	NA	NA	NA
AWD11914.1\|152526_152904_-	hypothetical protein	A0A2H4P7P5	Pseudomonas_phage	1.7e-22	49.6
AWD11915.1\|153465_154101_+	restriction endonuclease subunit M	NA	NA	NA	NA
AWD11916.1\|154153_154426_-	hypothetical protein	NA	NA	NA	NA
AWD11917.1\|154474_155656_-	chromosome partitioning protein ParB	I3NLC2	Bifidobacterium_phage	2.4e-11	28.7
AWD11918.1\|155659_156445_-	ParA family protein	A0A1X9IGI7	Lactococcus_phage	6.1e-11	26.4
AWD11919.1\|156618_156930_-	hypothetical protein	NA	NA	NA	NA
AWD11920.1\|157236_158052_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AWD11921.1\|158112_158916_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AWD11922.1\|158915_159752_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AWD11923.1\|160057_160300_+	relaxase	NA	NA	NA	NA
AWD11924.1\|160331_161009_-	TetR family transcriptional regulator	NA	NA	NA	NA
AWD11925.1\|161087_162287_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AWD11926.1\|162553_162859_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWD11927.1\|162886_164101_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	4.2e-19	28.7
AWD11928.1\|164317_165202_-	DUF3363 domain-containing protein	NA	NA	NA	NA
AWD11929.1\|165232_166726_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AWD11930.1\|166936_167161_-	hypothetical protein	NA	NA	NA	NA
AWD11931.1\|167157_167895_-	resolvase	NA	NA	NA	NA
AWD11932.1\|168001_168493_+	hypothetical protein	NA	NA	NA	NA
AWD11933.1\|168526_169231_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWD11934.1\|169616_170033_+	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
AWD11935.1\|170037_170556_-	hypothetical protein	NA	NA	NA	NA
AWD11936.1\|170555_171344_-	winged helix family transcriptional regulator	NA	NA	NA	NA
AWD11937.1\|171843_172548_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWD11938.1\|172524_172722_+	hypothetical protein	A0A077SL39	Escherichia_phage	1.4e-12	94.7
AWD11939.1\|173044_174577_-\|transposase	IS91 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027677

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP027678

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP027679

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection