CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028946	Serratia marcescens strain AR_0124 chromosome, complete genome	0 crisprs	cas3,DEDDh,cas14j,DinG,csa3,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

216931 : 252542

Salmonella_phage(28.21%)

tail,terminase,integrase

attL 210283:210299|attR 257461:257477

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
210283:210299	attL	NA	NA	NA	NA
AWC73606.1\|216931_220321_-	hypothetical protein	A0A1E1GEP2	Vibrio_phage	2.0e-183	36.5
AWC73607.1\|220320_223077_-	hypothetical protein	Q858G0	Salmonella_phage	7.2e-107	36.1
AWC73608.1\|223086_223659_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	7.8e-32	49.4
AWC73609.1\|223651_224125_-	hypothetical protein	Q858G2	Salmonella_phage	8.6e-53	66.0
AWC73610.1\|224124_226626_-	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	4.0e-306	61.2
AWC73611.1\|226625_227234_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	7.7e-62	61.4
AWC73612.1\|227233_227557_-	hypothetical protein	T1SBJ0	Salmonella_phage	2.7e-21	54.9
AWC77941.1\|227596_227881_-	hypothetical protein	NA	NA	NA	NA
AWC73613.1\|227901_228348_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	7.9e-32	57.4
AWC73614.1\|228401_229385_-	hypothetical protein	G9L6C5	Escherichia_phage	1.1e-139	74.0
AWC73615.1\|229391_230111_-	peptidase	G9L6C4	Escherichia_phage	7.7e-45	58.9
AWC73616.1\|230121_230385_-	hypothetical protein	V5KSC6	Escherichia_phage	1.2e-11	65.7
AWC77942.1\|230350_230647_-	hypothetical protein	Q2A090	Sodalis_phage	7.1e-29	72.9
AWC73617.1\|230646_232332_-\|tail	phage tail protein	T1S9Z7	Salmonella_phage	5.1e-188	58.8
AWC73618.1\|232334_232538_-	hypothetical protein	NA	NA	NA	NA
AWC73619.1\|233363_234836_-\|terminase	terminase	G9L6B8	Escherichia_phage	2.6e-233	77.8
AWC73620.1\|234832_235384_-\|terminase	terminase small subunit	Q858H4	Salmonella_phage	3.7e-55	59.7
AWC73621.1\|235489_235747_-	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.6e-16	52.9
AWC73622.1\|235819_236206_-	hypothetical protein	H9C172	Pectobacterium_phage	2.7e-12	35.1
AWC73623.1\|236198_236582_-	DUF551 domain-containing protein	I6R0M4	Salmonella_phage	2.3e-27	60.2
AWC73624.1\|236591_236846_-	hypothetical protein	A0A2H4EW60	Aeromonas_phage	3.6e-13	45.7
AWC77943.1\|236847_237360_-	hypothetical protein	Q716F4	Shigella_phage	2.3e-11	52.3
AWC73625.1\|237385_237661_-	hypothetical protein	S4TW48	Salmonella_phage	2.1e-19	61.4
AWC73626.1\|237841_238489_-	hypothetical protein	R9VWB9	Serratia_phage	1.0e-67	61.7
AWC73627.1\|238485_238851_-	hypothetical protein	R9W085	Serratia_phage	1.5e-20	61.5
AWC73628.1\|238861_239074_-	conjugal transfer protein TraR	Q9ZXI6	Pseudomonas_virus	3.1e-10	50.8
AWC77944.1\|239076_239376_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	7.1e-37	72.7
AWC73629.1\|239639_240206_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.2e-22	37.8
AWC73630.1\|240111_241062_-	hypothetical protein	A0A193GZ86	Enterobacter_phage	9.2e-78	59.7
AWC73631.1\|241061_241361_-	hypothetical protein	NA	NA	NA	NA
AWC73632.1\|241353_241554_-	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.3e-13	55.0
AWC73633.1\|241698_241917_-	hypothetical protein	Q858D6	Salmonella_phage	1.5e-15	58.0
AWC73634.1\|242065_242662_+	XRE family transcriptional regulator	G9L6A6	Escherichia_phage	7.3e-49	51.8
AWC73635.1\|242925_243111_+	hypothetical protein	A0A2H4YDC5	Klebsiella_virus	2.7e-10	50.0
AWC73636.1\|243187_243340_+	DUF2985 domain-containing protein	T1SA20	Salmonella_phage	1.6e-05	50.0
AWC73637.1\|243336_244383_+	hypothetical protein	M9P0E1	Enterobacteria_phage	1.3e-37	60.1
AWC73638.1\|244390_244696_+	hypothetical protein	NA	NA	NA	NA
AWC73639.1\|244695_245517_+	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.6e-126	78.7
AWC73640.1\|245513_246398_+	recombinase RecT	E5AGD9	Erwinia_phage	8.8e-99	65.4
AWC73641.1\|246438_246690_+	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	9.3e-14	48.8
AWC73642.1\|246807_247038_+	hypothetical protein	NA	NA	NA	NA
AWC73643.1\|247034_247673_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	1.5e-76	67.7
AWC73644.1\|247683_247968_+	hypothetical protein	NA	NA	NA	NA
AWC73645.1\|247971_249174_-\|integrase	site-specific integrase	T1S9J3	Salmonella_phage	7.3e-157	69.8
AWC73646.1\|249398_250976_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
AWC73647.1\|251078_252542_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.5
257461:257477	attR	NA	NA	NA	NA

DBSCAN-SWA_2

863099 : 901206

Erwinia_phage(46.15%)

tail,plate,portal,integrase,capsid,lysis,head,tRNA

attL 869279:869330|attR 901278:901329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC74156.1\|863099_864113_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.3e-110	59.5
AWC74157.1\|864438_864654_+	30S ribosomal protein S21	NA	NA	NA	NA
AWC74158.1\|864790_866539_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-74	38.8
AWC74159.1\|866696_868538_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
AWC74160.1\|868613_869102_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
869279:869330	attL	NA	NA	NA	NA
AWC74161.1\|869482_869713_-	transcriptional regulator	Q37973	Salmonella_virus	3.2e-21	64.5
AWC74162.1\|869803_870952_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	1.9e-125	63.4
AWC74163.1\|870948_871434_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.5e-47	65.7
AWC74164.1\|871438_874285_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	2.7e-109	50.7
AWC74165.1\|874277_874400_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	1.5e-09	72.5
AWC74166.1\|874432_874714_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.3e-26	69.0
AWC74167.1\|874768_875278_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
AWC74168.1\|875293_876463_-\|tail	phage tail protein	F1BUU3	Erwinia_phage	3.1e-184	81.7
AWC74169.1\|876739_877285_-\|tail	tail fiber assembly protein	A0A222YWC2	Escherichia_phage	2.0e-37	46.4
AWC74170.1\|877286_879908_-	hypothetical protein	Q858V4	Yersinia_virus	3.7e-60	54.1
AWC74171.1\|879914_880448_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	5.7e-77	76.0
AWC74172.1\|880440_881349_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	8.1e-108	68.2
AWC74173.1\|881353_881704_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.2e-37	67.2
AWC74174.1\|881851_882481_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	6.3e-75	72.8
AWC74175.1\|882553_883000_-	phage virion morphogenesis protein	O80313	Escherichia_phage	4.6e-40	58.4
AWC74176.1\|882986_883460_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.4e-49	61.8
AWC74177.1\|883555_883984_-\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	5.5e-14	36.6
AWC74178.1\|883980_884493_-	lysozyme	A0A218M4K3	Erwinia_phage	5.7e-58	66.5
AWC74179.1\|884476_884686_-	hypothetical protein	A0A218M4L5	Erwinia_phage	2.0e-09	43.5
AWC74180.1\|884690_884894_-\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	2.4e-20	68.7
AWC74181.1\|884893_885382_-\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	1.1e-39	54.3
AWC74182.1\|885475_886135_-	hypothetical protein	F1BUQ7	Erwinia_phage	5.2e-80	69.4
AWC74183.1\|886137_887349_-\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	7.9e-159	78.5
AWC74184.1\|887391_888207_-\|capsid	phage capsid protein	S4TP53	Salmonella_phage	2.7e-70	53.1
AWC74185.1\|888349_890122_+	oxidoreductase	F1BUR2	Erwinia_phage	4.4e-291	82.0
AWC74186.1\|890121_891156_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	3.2e-161	79.5
AWC77981.1\|891200_891542_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
AWC74187.1\|891541_891796_-	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	5.9e-16	47.6
AWC74188.1\|892320_892893_-	flavin reductase	NA	NA	NA	NA
AWC77982.1\|893021_893921_+	LysR family transcriptional regulator	NA	NA	NA	NA
AWC74189.1\|894017_894248_-	hypothetical protein	NA	NA	NA	NA
AWC77983.1\|894262_894493_-	hypothetical protein	NA	NA	NA	NA
AWC74190.1\|894533_896747_-	replication endonuclease	S4TTC1	Salmonella_phage	4.7e-242	58.9
AWC74191.1\|896743_897169_-	hypothetical protein	NA	NA	NA	NA
AWC74192.1\|897158_897440_-	hypothetical protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
AWC74193.1\|897562_897787_-	hypothetical protein	Q6K1F5	Salmonella_virus	3.7e-14	56.9
AWC74194.1\|897786_898080_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	6.4e-06	54.4
AWC74195.1\|898144_898447_-	hypothetical protein	NA	NA	NA	NA
AWC77984.1\|898458_898638_-	hypothetical protein	F1BUS5	Erwinia_phage	1.1e-05	51.0
AWC74196.1\|898648_899158_-	hypothetical protein	A0A1S6L008	Salmonella_phage	5.5e-45	53.6
AWC74197.1\|899189_899453_-	hypothetical protein	A0A218M4I5	Erwinia_phage	4.8e-37	85.1
AWC74198.1\|899584_900163_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	9.9e-59	55.3
AWC74199.1\|900162_901206_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.0e-178	87.0
901278:901329	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1647018 : 1658458

Enterobacteria_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC74831.1\|1647018_1648206_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	8.5e-198	87.1
AWC74832.1\|1648192_1650913_+	hypothetical protein	NA	NA	NA	NA
AWC74833.1\|1650860_1651043_-	hypothetical protein	NA	NA	NA	NA
AWC74834.1\|1651173_1651425_-	transcriptional regulator	F1BUT0	Erwinia_phage	2.9e-15	67.3
AWC74835.1\|1651421_1652138_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	2.9e-15	27.2
AWC74836.1\|1652648_1652906_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.3e-18	59.3
AWC74837.1\|1652902_1653151_+	hypothetical protein	NA	NA	NA	NA
AWC74838.1\|1653164_1653692_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	8.2e-28	66.1
AWC74839.1\|1653688_1653955_+	hypothetical protein	NA	NA	NA	NA
AWC74840.1\|1653941_1654283_+	hypothetical protein	NA	NA	NA	NA
AWC74841.1\|1654297_1656613_+	DNA primase	Q7M2A8	Enterobacteria_phage	1.9e-257	59.8
AWC74842.1\|1656934_1658458_+	hypothetical protein	Q38324	Lactococcus_phage	1.0e-14	27.3

DBSCAN-SWA_4

2488653 : 2497309

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC75531.1\|2488653_2489757_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.6e-60	43.4
AWC75532.1\|2489760_2491020_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.6e-98	48.6
AWC75533.1\|2491438_2492629_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	2.8e-140	61.1
AWC75534.1\|2493364_2493628_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.5e-17	55.0
AWC75535.1\|2493624_2493840_+	hypothetical protein	NA	NA	NA	NA
AWC75536.1\|2493826_2494372_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	5.5e-27	60.7
AWC75537.1\|2494368_2494632_+	hypothetical protein	NA	NA	NA	NA
AWC75538.1\|2494628_2494964_+	hypothetical protein	NA	NA	NA	NA
AWC75539.1\|2494975_2497309_+	DNA primase	Q7M2A8	Enterobacteria_phage	3.3e-262	60.2

DBSCAN-SWA_5

3473659 : 3512397

Enterobacterial_phage(27.03%)

tail,portal,terminase,integrase,lysis

attL 3467872:3467886|attR 3519893:3519907

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3467872:3467886	attL	NA	NA	NA	NA
AWC76415.1\|3473659_3474670_-\|integrase	integrase	K7PLZ2	Enterobacterial_phage	4.6e-128	66.7
AWC76416.1\|3474669_3474903_-	DUF4224 domain-containing protein	NA	NA	NA	NA
AWC78093.1\|3475210_3476056_-	hypothetical protein	M4MB35	Vibrio_phage	6.3e-46	38.4
AWC76417.1\|3476060_3476717_-	hypothetical protein	R9VWB9	Serratia_phage	3.2e-45	46.3
AWC76418.1\|3476713_3477124_-	hypothetical protein	NA	NA	NA	NA
AWC76419.1\|3477120_3477906_-	hypothetical protein	C7BGF1	Burkholderia_phage	1.8e-63	52.5
AWC76420.1\|3478891_3479710_-	DUF3037 domain-containing protein	NA	NA	NA	NA
AWC76421.1\|3479706_3480447_-	hypothetical protein	NA	NA	NA	NA
AWC76422.1\|3480659_3481310_-	helix-turn-helix transcriptional regulator	G9L676	Escherichia_phage	2.8e-62	56.0
AWC76423.1\|3481409_3481607_+	hypothetical protein	K7PHB1	Enterobacterial_phage	2.6e-19	72.3
AWC76424.1\|3481634_3482168_+	DNA-binding protein	A0A0P0ZE62	Stx2-converting_phage	3.6e-15	30.1
AWC76425.1\|3482366_3483281_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.7e-52	52.5
AWC76426.1\|3483277_3483997_+	DNA replication protein	I6PBN0	Cronobacter_phage	2.9e-44	42.8
AWC76427.1\|3483993_3484377_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.1e-37	62.5
AWC76428.1\|3484361_3485357_+	DUF968 domain-containing protein	A0A0P0ZD76	Stx2-converting_phage	4.7e-85	46.7
AWC76429.1\|3485407_3486076_+	hypothetical protein	Q8HA89	Salmonella_phage	1.7e-46	45.2
AWC76430.1\|3486271_3486508_+	hypothetical protein	NA	NA	NA	NA
AWC76431.1\|3486476_3486806_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AWC76432.1\|3486984_3488007_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	3.6e-120	62.4
AWC76433.1\|3488163_3488409_+\|lysis	lysis protein	A0A127KNH9	Pseudomonas_phage	1.2e-05	36.2
AWC78094.1\|3488417_3488894_+	lysozyme	A0A1R3Y5W5	Salmonella_virus	1.6e-51	62.2
AWC76434.1\|3488893_3489421_+	hypothetical protein	K7P6W1	Enterobacteria_phage	1.6e-31	53.3
AWC76435.1\|3490176_3490431_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.0e-24	65.5
AWC76436.1\|3490708_3491218_+	DUF1441 domain-containing protein	A5LH26	Enterobacteria_phage	8.2e-41	53.2
AWC76437.1\|3491207_3493319_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	9.2e-304	71.0
AWC76438.1\|3493315_3493531_+	hypothetical protein	K7PMB5	Enterobacterial_phage	4.4e-20	71.4
AWC76439.1\|3493527_3495039_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	9.1e-205	70.7
AWC76440.1\|3494980_3497005_+	peptidase S14	K7PKX4	Enterobacterial_phage	9.5e-274	72.9
AWC76441.1\|3497090_3497414_+	DUF2190 domain-containing protein	K7PJY3	Enterobacterial_phage	8.0e-26	58.9
AWC76442.1\|3497406_3497682_+	ATP-binding protein	K7PH55	Enterobacterial_phage	2.2e-16	51.2
AWC78095.1\|3497692_3498256_+\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.6e-50	57.8
AWC76443.1\|3498252_3498654_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.3e-44	59.4
AWC76444.1\|3498665_3499403_+\|tail	phage tail protein	K7P6G8	Enterobacteria_phage	1.2e-88	67.3
AWC78096.1\|3499447_3499858_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	1.5e-21	41.8
AWC76445.1\|3499878_3500178_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	2.6e-23	55.6
AWC76446.1\|3500170_3503296_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	1.7e-112	30.4
AWC76447.1\|3503295_3503649_+\|tail	phage tail protein	A0A1W6JP11	Morganella_phage	9.4e-20	41.2
AWC76448.1\|3503657_3504407_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	2.2e-87	61.0
AWC76449.1\|3504409_3505111_+	peptidase P60	A0A1W6JP31	Morganella_phage	1.6e-74	56.5
AWC76450.1\|3505171_3505732_+	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	7.4e-27	38.9
AWC76451.1\|3505784_3506399_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	5.2e-58	60.9
AWC76452.1\|3506460_3509808_+	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	4.1e-298	58.9
AWC78097.1\|3509853_3512397_+	hypothetical protein	A0A2D1GNM3	Pseudomonas_phage	3.2e-29	30.7
3519893:3519907	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage