CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	9 crisprs	NA	8	4	0	0

Cas Category Instructions

Results visualization

1. CP029030

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CRISPR-Cas detection and classification

Crispr_ID: CP029030_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_1

433556-433656

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029030_1

>merge|CP029030|1|433556-433656|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP029030|1|1|433556-433656|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

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Crispr_ID: CP029030_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_2

672074-672166

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029030_2

>merge|CP029030|2|672074-672166|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>CP029030|2|2|672074-672166|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

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Crispr_ID: CP029030_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_3

834527-834612

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029030_3

>merge|CP029030|3|834527-834612|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>CP029030|3|3|834527-834612|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Crispr_ID: CP029030_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_4

877738-877819

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029030_4

>merge|CP029030|4|877738-877819|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>CP029030|4|4|877738-877819|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

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Crispr_ID: CP029030_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_5

940549-940831

Orphan

Consensus_repeat	Method
AAAGNCAGCTNNNNANANNNTGCAAGTTGG	CRT

4 spacers

The CRISPR arrays of CP029030_5

>merge|CP029030|5|940549-940831|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGGCGGGGCCCCAACACAGAGGCTGGCGGAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGAGCCCCGACACAGAGAAATTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGG

>CP029030|5|1|940549-940831|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	CGGGGCCCCAACACAGAGGCTGGCGG
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGAGCCCCGACACAGAGAAATTAGC
TCCTCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGCGA
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA
AAAGACAGCAGTAGGATAATTTCAATTTGG

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Crispr_ID: CP029030_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_6

1074222-1074309

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029030_6

>merge|CP029030|6|1074222-1074309|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>CP029030|6|5|1074222-1074309|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

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Crispr_ID: CP029030_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_7

2029506-2029584

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACCTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029030_7

>merge|CP029030|7|2029506-2029584|CRISPRCasFinder
TGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCA

>CP029030|7|6|2029506-2029584|CRISPRCasFinder
TGTTGGGGCCCCGCCAACCTGCA	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG
TGTTGGGGCCCCGCCAACCTGCA

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Crispr_ID: CP029030_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_8

2221735-2221885

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP029030_8

>merge|CP029030|8|2221735-2221885|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>CP029030|8|7|2221735-2221885|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

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Crispr_ID: CP029030_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029030_9

2345897-2346090

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of CP029030_9

>merge|CP029030|9|2345897-2346090|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>CP029030|9|2|2345897-2346090|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029030_4	4.1\|877762\|34\|CP029030\|CRISPRCasFinder	877762-877795	34	CP029030.1	1366723-1366756	0	1.0
CP029030_4	4.1\|877762\|34\|CP029030\|CRISPRCasFinder	877762-877795	34	CP029030.1	1455915-1455948	0	1.0
CP029030_9	9.2\|2345976\|36\|CP029030\|CRT	2345976-2346011	36	CP029030.1	1158497-1158532	0	1.0
CP029030_3	3.1\|834557\|26\|CP029030\|CRISPRCasFinder	834557-834582	26	CP029030.1	797494-797519	1	0.962
CP029030_3	3.1\|834557\|26\|CP029030\|CRISPRCasFinder	834557-834582	26	CP029030.1	2787209-2787234	1	0.962
CP029030_3	3.1\|834557\|26\|CP029030\|CRISPRCasFinder	834557-834582	26	CP029030.1	2787265-2787290	1	0.962
CP029030_5	5.1\|940579\|26\|CP029030\|CRT	940579-940604	26	CP029030.1	940523-940548	1	0.962
CP029030_5	5.3\|940693\|26\|CP029030\|CRT	940693-940718	26	CP029030.1	834613-834638	1	0.962
CP029030_7	7.1\|2029529\|33\|CP029030\|CRISPRCasFinder	2029529-2029561	33	CP029030.1	834593-834625	1	0.97
CP029030_7	7.1\|2029529\|33\|CP029030\|CRISPRCasFinder	2029529-2029561	33	CP029030.1	1158553-1158585	1	0.97
CP029030_7	7.1\|2029529\|33\|CP029030\|CRISPRCasFinder	2029529-2029561	33	CP029030.1	1366678-1366710	1	0.97
CP029030_7	7.1\|2029529\|33\|CP029030\|CRISPRCasFinder	2029529-2029561	33	CP029030.1	1694551-1694583	1	0.97
CP029030_7	7.1\|2029529\|33\|CP029030\|CRISPRCasFinder	2029529-2029561	33	CP029030.1	2621859-2621891	1	0.97
CP029030_9	9.2\|2345976\|36\|CP029030\|CRT	2345976-2346011	36	CP029030.1	1872844-1872879	1	0.972
CP029030_3	3.1\|834557\|26\|CP029030\|CRISPRCasFinder	834557-834582	26	CP029030.1	797550-797575	2	0.923
CP029030_3	3.1\|834557\|26\|CP029030\|CRISPRCasFinder	834557-834582	26	CP029030.1	940523-940548	2	0.923
CP029030_5	5.1\|940579\|26\|CP029030\|CRT	940579-940604	26	CP029030.1	797494-797519	2	0.923
CP029030_5	5.1\|940579\|26\|CP029030\|CRT	940579-940604	26	CP029030.1	2787209-2787234	2	0.923
CP029030_5	5.1\|940579\|26\|CP029030\|CRT	940579-940604	26	CP029030.1	2787265-2787290	2	0.923
CP029030_5	5.3\|940693\|26\|CP029030\|CRT	940693-940718	26	CP029030.1	394889-394914	2	0.923
CP029030_7	7.1\|2029529\|33\|CP029030\|CRISPRCasFinder	2029529-2029561	33	CP029030.1	1455961-1455993	2	0.939
CP029030_9	9.1\|2345920\|33\|CP029030\|CRT	2345920-2345952	33	CP029030.1	834593-834625	2	0.939
CP029030_9	9.1\|2345920\|33\|CP029030\|CRT	2345920-2345952	33	CP029030.1	1158553-1158585	2	0.939
CP029030_9	9.1\|2345920\|33\|CP029030\|CRT	2345920-2345952	33	CP029030.1	1366678-1366710	2	0.939
CP029030_9	9.1\|2345920\|33\|CP029030\|CRT	2345920-2345952	33	CP029030.1	1455961-1455993	2	0.939
CP029030_9	9.1\|2345920\|33\|CP029030\|CRT	2345920-2345952	33	CP029030.1	2621859-2621891	2	0.939
CP029030_9	9.2\|2345976\|36\|CP029030\|CRT	2345976-2346011	36	CP029030.1	1694490-1694525	2	0.944
CP029030_9	9.2\|2345976\|36\|CP029030\|CRT	2345976-2346011	36	CP029030.1	2040391-2040426	2	0.944
CP029030_9	9.3\|2346035\|33\|CP029030\|CRT	2346035-2346067	33	CP029030.1	834593-834625	2	0.939
CP029030_9	9.3\|2346035\|33\|CP029030\|CRT	2346035-2346067	33	CP029030.1	1158553-1158585	2	0.939
CP029030_9	9.3\|2346035\|33\|CP029030\|CRT	2346035-2346067	33	CP029030.1	1366678-1366710	2	0.939
CP029030_9	9.3\|2346035\|33\|CP029030\|CRT	2346035-2346067	33	CP029030.1	2621859-2621891	2	0.939

1. spacer 4.1|877762|34|CP029030|CRISPRCasFinder matches to position: 1366723-1366756, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 4.1|877762|34|CP029030|CRISPRCasFinder matches to position: 1455915-1455948, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 9.2|2345976|36|CP029030|CRT matches to position: 1158497-1158532, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 3.1|834557|26|CP029030|CRISPRCasFinder matches to position: 797494-797519, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

5. spacer 3.1|834557|26|CP029030|CRISPRCasFinder matches to position: 2787209-2787234, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

6. spacer 3.1|834557|26|CP029030|CRISPRCasFinder matches to position: 2787265-2787290, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

7. spacer 5.1|940579|26|CP029030|CRT matches to position: 940523-940548, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 5.3|940693|26|CP029030|CRT matches to position: 834613-834638, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 7.1|2029529|33|CP029030|CRISPRCasFinder matches to position: 834593-834625, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

10. spacer 7.1|2029529|33|CP029030|CRISPRCasFinder matches to position: 1158553-1158585, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

11. spacer 7.1|2029529|33|CP029030|CRISPRCasFinder matches to position: 1366678-1366710, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

12. spacer 7.1|2029529|33|CP029030|CRISPRCasFinder matches to position: 1694551-1694583, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

13. spacer 7.1|2029529|33|CP029030|CRISPRCasFinder matches to position: 2621859-2621891, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

14. spacer 9.2|2345976|36|CP029030|CRT matches to position: 1872844-1872879, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

15. spacer 3.1|834557|26|CP029030|CRISPRCasFinder matches to position: 797550-797575, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

16. spacer 3.1|834557|26|CP029030|CRISPRCasFinder matches to position: 940523-940548, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

17. spacer 5.1|940579|26|CP029030|CRT matches to position: 797494-797519, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

18. spacer 5.1|940579|26|CP029030|CRT matches to position: 2787209-2787234, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

19. spacer 5.1|940579|26|CP029030|CRT matches to position: 2787265-2787290, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

20. spacer 5.3|940693|26|CP029030|CRT matches to position: 394889-394914, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

21. spacer 7.1|2029529|33|CP029030|CRISPRCasFinder matches to position: 1455961-1455993, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

22. spacer 9.1|2345920|33|CP029030|CRT matches to position: 834593-834625, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

23. spacer 9.1|2345920|33|CP029030|CRT matches to position: 1158553-1158585, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

24. spacer 9.1|2345920|33|CP029030|CRT matches to position: 1366678-1366710, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

25. spacer 9.1|2345920|33|CP029030|CRT matches to position: 1455961-1455993, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

26. spacer 9.1|2345920|33|CP029030|CRT matches to position: 2621859-2621891, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 9.2|2345976|36|CP029030|CRT matches to position: 1694490-1694525, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

28. spacer 9.2|2345976|36|CP029030|CRT matches to position: 2040391-2040426, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

29. spacer 9.3|2346035|33|CP029030|CRT matches to position: 834593-834625, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 9.3|2346035|33|CP029030|CRT matches to position: 1158553-1158585, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

31. spacer 9.3|2346035|33|CP029030|CRT matches to position: 1366678-1366710, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

32. spacer 9.3|2346035|33|CP029030|CRT matches to position: 2621859-2621891, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029030_5	5.4\|940749\|53\|CP029030\|CRT	940749-940801	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
CP029030_3	3.1\|834557\|26\|CP029030\|CRISPRCasFinder	834557-834582	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP029030_3	3.1\|834557\|26\|CP029030\|CRISPRCasFinder	834557-834582	26	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3359-3384	5	0.808
CP029030_3	3.1\|834557\|26\|CP029030\|CRISPRCasFinder	834557-834582	26	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715511-715536	5	0.808
CP029030_5	5.3\|940693\|26\|CP029030\|CRT	940693-940718	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP029030_7	7.1\|2029529\|33\|CP029030\|CRISPRCasFinder	2029529-2029561	33	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159745-159777	10	0.697

1. spacer 5.4|940749|53|CP029030|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************

2. spacer 3.1|834557|26|CP029030|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 3.1|834557|26|CP029030|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.

4. spacer 3.1|834557|26|CP029030|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

5. spacer 5.3|940693|26|CP029030|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.*****************

6. spacer 7.1|2029529|33|CP029030|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage